Query 030933
Match_columns 169
No_of_seqs 141 out of 1143
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 06:45:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030933.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030933hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0037 Ca2+-binding protein, 100.0 3.2E-28 7E-33 166.5 19.5 162 5-166 57-220 (221)
2 COG5126 FRQ1 Ca2+-binding prot 100.0 8.3E-27 1.8E-31 155.0 15.5 131 2-133 17-155 (160)
3 KOG0027 Calmodulin and related 99.9 2.3E-25 5E-30 150.1 15.8 132 2-133 5-148 (151)
4 PTZ00184 calmodulin; Provision 99.9 7.5E-22 1.6E-26 132.4 16.3 132 2-133 8-147 (149)
5 KOG0028 Ca2+-binding protein ( 99.9 4.4E-22 9.4E-27 130.0 14.3 132 2-133 30-169 (172)
6 PTZ00183 centrin; Provisional 99.9 1.4E-21 3.1E-26 132.4 15.8 133 2-134 14-154 (158)
7 KOG0030 Myosin essential light 99.8 6.6E-20 1.4E-24 117.1 13.2 132 1-133 7-150 (152)
8 KOG0031 Myosin regulatory ligh 99.8 1E-18 2.2E-23 113.5 15.2 127 3-133 30-164 (171)
9 KOG0036 Predicted mitochondria 99.8 5.8E-18 1.3E-22 125.8 14.4 133 3-135 12-147 (463)
10 KOG0034 Ca2+/calmodulin-depend 99.7 7.5E-17 1.6E-21 110.9 13.8 134 3-140 31-181 (187)
11 KOG0044 Ca2+ sensor (EF-Hand s 99.7 3.3E-16 7.2E-21 107.8 14.9 143 3-145 24-186 (193)
12 PTZ00183 centrin; Provisional 99.6 9.7E-14 2.1E-18 93.9 15.2 124 41-166 17-154 (158)
13 KOG0027 Calmodulin and related 99.6 2.2E-13 4.7E-18 91.8 14.5 125 40-166 7-149 (151)
14 PTZ00184 calmodulin; Provision 99.6 3.5E-13 7.6E-18 90.1 14.5 123 41-165 11-147 (149)
15 COG5126 FRQ1 Ca2+-binding prot 99.5 8.8E-13 1.9E-17 88.1 14.8 124 41-166 20-156 (160)
16 KOG4223 Reticulocalbin, calume 99.5 1.2E-13 2.5E-18 100.4 10.4 157 3-161 75-264 (325)
17 KOG0044 Ca2+ sensor (EF-Hand s 99.5 5.5E-12 1.2E-16 87.0 15.3 142 20-165 7-174 (193)
18 PLN02964 phosphatidylserine de 99.4 4.4E-12 9.6E-17 101.6 12.7 108 2-113 140-272 (644)
19 KOG0037 Ca2+-binding protein, 99.4 5.2E-12 1.1E-16 87.2 10.4 85 4-88 123-208 (221)
20 cd05022 S-100A13 S-100A13: S-1 99.4 4.2E-12 9E-17 77.5 8.7 68 69-136 6-77 (89)
21 PF13499 EF-hand_7: EF-hand do 99.4 4.2E-12 9.2E-17 73.5 7.6 61 72-132 1-66 (66)
22 PF13499 EF-hand_7: EF-hand do 99.4 5.4E-12 1.2E-16 73.0 7.3 62 6-67 1-66 (66)
23 cd05022 S-100A13 S-100A13: S-1 99.3 8E-12 1.7E-16 76.2 7.6 67 4-70 7-76 (89)
24 KOG0377 Protein serine/threoni 99.3 4.7E-11 1E-15 90.3 12.6 130 4-135 463-616 (631)
25 cd05029 S-100A6 S-100A6: S-100 99.3 8.3E-11 1.8E-15 71.8 10.3 70 68-137 7-82 (88)
26 KOG0034 Ca2+/calmodulin-depend 99.3 4.1E-10 8.9E-15 77.7 14.3 128 38-167 27-176 (187)
27 cd05027 S-100B S-100B: S-100B 99.3 4.4E-11 9.6E-16 73.0 8.5 67 4-70 7-80 (88)
28 KOG2643 Ca2+ binding protein, 99.3 1.4E-10 3E-15 87.6 12.4 158 5-165 233-452 (489)
29 cd05027 S-100B S-100B: S-100B 99.2 1.3E-10 2.9E-15 70.9 9.5 68 69-136 6-81 (88)
30 KOG0028 Ca2+-binding protein ( 99.2 1.3E-09 2.8E-14 71.9 13.9 123 41-165 33-169 (172)
31 KOG4223 Reticulocalbin, calume 99.2 8.2E-11 1.8E-15 85.7 9.0 126 6-131 164-302 (325)
32 PF13833 EF-hand_8: EF-hand do 99.2 9.7E-11 2.1E-15 65.0 7.4 52 83-134 1-53 (54)
33 KOG0038 Ca2+-binding kinase in 99.2 1.8E-10 4E-15 74.7 8.6 100 44-143 74-186 (189)
34 smart00027 EH Eps15 homology d 99.2 2E-10 4.3E-15 71.5 7.8 71 2-74 7-77 (96)
35 cd05029 S-100A6 S-100A6: S-100 99.2 3.1E-10 6.7E-15 69.3 8.3 67 4-70 9-80 (88)
36 cd05025 S-100A1 S-100A1: S-100 99.2 6.8E-10 1.5E-14 68.5 9.6 67 4-70 8-81 (92)
37 cd05031 S-100A10_like S-100A10 99.2 5.6E-10 1.2E-14 69.1 9.2 68 4-71 7-81 (94)
38 cd05026 S-100Z S-100Z: S-100Z 99.2 7E-10 1.5E-14 68.5 9.5 70 69-138 8-85 (93)
39 cd05026 S-100Z S-100Z: S-100Z 99.1 4.4E-10 9.6E-15 69.4 8.4 67 4-70 9-82 (93)
40 cd00213 S-100 S-100: S-100 dom 99.1 5.2E-10 1.1E-14 68.5 8.0 69 2-70 5-80 (88)
41 cd05025 S-100A1 S-100A1: S-100 99.1 1.4E-09 3E-14 67.1 9.8 69 70-138 8-84 (92)
42 cd05031 S-100A10_like S-100A10 99.1 2.3E-09 4.9E-14 66.4 10.5 70 69-138 6-83 (94)
43 cd00052 EH Eps15 homology doma 99.1 4.9E-10 1.1E-14 64.8 7.1 60 8-69 2-61 (67)
44 cd00052 EH Eps15 homology doma 99.1 1E-09 2.2E-14 63.5 7.9 61 74-136 2-63 (67)
45 PF13833 EF-hand_8: EF-hand do 99.1 9.9E-10 2.1E-14 60.9 6.8 52 18-69 1-53 (54)
46 smart00027 EH Eps15 homology d 99.1 2.3E-09 4.9E-14 66.7 9.1 68 70-139 9-77 (96)
47 cd05023 S-100A11 S-100A11: S-1 99.1 2.8E-09 6E-14 65.2 9.1 68 69-136 7-82 (89)
48 cd00051 EFh EF-hand, calcium b 99.1 1.2E-09 2.6E-14 61.6 7.1 61 7-67 2-62 (63)
49 KOG0040 Ca2+-binding actin-bun 99.0 4E-09 8.7E-14 89.5 12.4 124 2-132 2250-2396(2399)
50 KOG2643 Ca2+ binding protein, 99.0 3E-09 6.5E-14 80.5 10.2 130 5-135 318-454 (489)
51 KOG0031 Myosin regulatory ligh 99.0 1.1E-08 2.3E-13 67.2 11.0 88 62-153 22-118 (171)
52 cd00213 S-100 S-100: S-100 dom 99.0 6.9E-09 1.5E-13 63.4 8.9 68 69-136 6-81 (88)
53 cd00051 EFh EF-hand, calcium b 99.0 4E-09 8.6E-14 59.5 7.3 60 73-132 2-62 (63)
54 cd05023 S-100A11 S-100A11: S-1 99.0 6.6E-09 1.4E-13 63.5 8.2 67 4-70 8-81 (89)
55 PLN02964 phosphatidylserine de 98.9 1E-08 2.2E-13 82.6 10.8 88 71-164 143-241 (644)
56 cd05030 calgranulins Calgranul 98.9 6.1E-09 1.3E-13 63.6 7.2 66 70-135 7-80 (88)
57 KOG0751 Mitochondrial aspartat 98.9 8.1E-08 1.8E-12 74.0 13.3 164 3-167 31-211 (694)
58 PF14658 EF-hand_9: EF-hand do 98.9 1.1E-08 2.5E-13 58.0 6.3 60 10-69 3-64 (66)
59 KOG0030 Myosin essential light 98.9 5E-08 1.1E-12 63.0 9.9 95 41-135 11-117 (152)
60 cd00252 SPARC_EC SPARC_EC; ext 98.8 1.6E-08 3.6E-13 64.6 7.1 61 69-133 46-107 (116)
61 KOG0036 Predicted mitochondria 98.8 2.2E-07 4.9E-12 70.1 13.6 119 40-165 13-145 (463)
62 cd00252 SPARC_EC SPARC_EC; ext 98.8 3.2E-08 7E-13 63.3 7.8 60 4-67 47-106 (116)
63 cd05030 calgranulins Calgranul 98.8 2.9E-08 6.3E-13 60.6 7.3 66 4-69 7-79 (88)
64 KOG0041 Predicted Ca2+-binding 98.7 9.9E-08 2.2E-12 65.4 8.5 100 60-161 87-198 (244)
65 PF14658 EF-hand_9: EF-hand do 98.7 1E-07 2.3E-12 54.1 7.0 60 75-134 2-64 (66)
66 KOG4251 Calcium binding protei 98.7 5.6E-08 1.2E-12 68.7 6.4 156 4-161 100-304 (362)
67 cd05024 S-100A10 S-100A10: A s 98.7 4.3E-07 9.3E-12 55.2 9.4 70 70-139 7-81 (91)
68 KOG2562 Protein phosphatase 2 98.7 3.6E-07 7.9E-12 69.9 10.6 122 7-131 280-421 (493)
69 PF00036 EF-hand_1: EF hand; 98.5 1.6E-07 3.4E-12 44.9 3.6 28 6-33 1-28 (29)
70 KOG0169 Phosphoinositide-speci 98.5 2.3E-06 5E-11 69.2 11.6 131 3-133 134-273 (746)
71 cd05024 S-100A10 S-100A10: A s 98.5 1.7E-06 3.8E-11 52.6 8.4 66 4-70 7-77 (91)
72 KOG0041 Predicted Ca2+-binding 98.5 8.4E-07 1.8E-11 60.9 7.0 67 3-69 97-163 (244)
73 PF14788 EF-hand_10: EF hand; 98.4 1.8E-06 4E-11 46.3 6.0 50 21-70 1-50 (51)
74 KOG0751 Mitochondrial aspartat 98.4 1.8E-05 3.8E-10 61.5 13.6 154 7-165 110-277 (694)
75 KOG0377 Protein serine/threoni 98.4 8E-06 1.7E-10 62.6 11.3 93 71-165 464-614 (631)
76 KOG2562 Protein phosphatase 2 98.4 6.9E-06 1.5E-10 63.1 10.9 147 5-154 174-369 (493)
77 PF12763 EF-hand_4: Cytoskelet 98.4 3.9E-06 8.4E-11 52.7 7.7 65 2-69 7-71 (104)
78 PF13405 EF-hand_6: EF-hand do 98.4 8E-07 1.7E-11 43.2 3.6 30 6-35 1-31 (31)
79 PF00036 EF-hand_1: EF hand; 98.3 1.5E-06 3.2E-11 41.5 4.0 24 74-97 3-27 (29)
80 PF12763 EF-hand_4: Cytoskelet 98.3 1.8E-05 4E-10 49.6 8.9 65 71-137 10-74 (104)
81 PF13405 EF-hand_6: EF-hand do 98.3 2.7E-06 5.8E-11 41.3 4.1 29 72-100 1-31 (31)
82 PF14788 EF-hand_10: EF hand; 98.2 8.5E-06 1.8E-10 43.7 6.2 50 86-135 1-50 (51)
83 KOG4666 Predicted phosphate ac 98.0 5.6E-06 1.2E-10 61.0 4.0 102 41-144 259-369 (412)
84 PF13202 EF-hand_5: EF hand; P 98.0 8.6E-06 1.9E-10 37.4 3.2 25 7-31 1-25 (25)
85 KOG0040 Ca2+-binding actin-bun 97.9 7.3E-05 1.6E-09 64.8 8.2 87 71-160 2253-2355(2399)
86 KOG1029 Endocytic adaptor prot 97.8 0.00059 1.3E-08 55.9 12.0 125 5-134 16-257 (1118)
87 PRK12309 transaldolase/EF-hand 97.8 7.9E-05 1.7E-09 57.5 7.0 57 35-98 328-385 (391)
88 PF09279 EF-hand_like: Phospho 97.8 8.7E-05 1.9E-09 44.6 5.2 62 72-133 1-68 (83)
89 PF10591 SPARC_Ca_bdg: Secrete 97.7 1.8E-05 3.8E-10 50.5 2.1 59 5-65 54-112 (113)
90 PF13202 EF-hand_5: EF hand; P 97.7 7E-05 1.5E-09 34.3 3.5 19 76-94 4-23 (25)
91 PRK12309 transaldolase/EF-hand 97.7 0.00017 3.7E-09 55.7 7.5 97 21-135 281-386 (391)
92 PF10591 SPARC_Ca_bdg: Secrete 97.6 3E-05 6.4E-10 49.5 1.9 60 70-131 53-113 (113)
93 KOG0038 Ca2+-binding kinase in 97.6 0.00051 1.1E-08 45.2 7.2 89 11-99 77-178 (189)
94 KOG0046 Ca2+-binding actin-bun 97.6 0.00054 1.2E-08 53.9 8.1 66 71-136 19-87 (627)
95 KOG1707 Predicted Ras related/ 97.5 0.0013 2.8E-08 52.6 9.3 126 4-133 194-376 (625)
96 KOG4251 Calcium binding protei 97.4 0.001 2.2E-08 47.6 7.1 112 21-132 215-343 (362)
97 KOG0046 Ca2+-binding actin-bun 97.4 0.00069 1.5E-08 53.3 6.5 65 3-68 17-84 (627)
98 PF09279 EF-hand_like: Phospho 97.3 0.0012 2.5E-08 39.7 5.7 62 6-68 1-68 (83)
99 KOG4666 Predicted phosphate ac 97.2 0.0016 3.5E-08 48.4 7.0 96 5-100 259-361 (412)
100 smart00054 EFh EF-hand, calciu 97.2 0.00058 1.2E-08 31.4 3.1 27 7-33 2-28 (29)
101 PF05042 Caleosin: Caleosin re 96.9 0.013 2.7E-07 39.9 8.4 127 5-132 7-164 (174)
102 KOG4065 Uncharacterized conser 96.9 0.005 1.1E-07 38.9 6.0 64 3-66 65-142 (144)
103 PF05517 p25-alpha: p25-alpha 96.9 0.012 2.6E-07 39.7 8.2 64 73-136 1-71 (154)
104 PLN02952 phosphoinositide phos 96.8 0.012 2.6E-07 47.9 9.3 80 54-133 13-109 (599)
105 KOG4065 Uncharacterized conser 96.7 0.0049 1.1E-07 38.9 4.9 57 75-131 71-142 (144)
106 smart00054 EFh EF-hand, calciu 96.6 0.0037 8.1E-08 28.4 3.0 12 84-95 14-25 (29)
107 KOG1029 Endocytic adaptor prot 96.3 0.0073 1.6E-07 49.9 5.0 64 3-68 193-256 (1118)
108 KOG0035 Ca2+-binding actin-bun 96.2 0.073 1.6E-06 45.1 10.2 91 4-94 746-848 (890)
109 KOG1955 Ral-GTPase effector RA 95.5 0.042 9.2E-07 43.4 5.6 65 2-68 228-292 (737)
110 KOG1265 Phospholipase C [Lipid 95.3 0.68 1.5E-05 39.5 12.0 115 16-133 159-298 (1189)
111 PF05517 p25-alpha: p25-alpha 94.6 0.39 8.4E-06 32.4 7.9 62 8-69 2-69 (154)
112 KOG0998 Synaptic vesicle prote 94.4 0.1 2.2E-06 44.7 5.7 128 5-136 11-192 (847)
113 PF08726 EFhand_Ca_insen: Ca2+ 94.4 0.041 9E-07 31.7 2.3 53 71-130 6-65 (69)
114 KOG3555 Ca2+-binding proteogly 94.3 0.14 3.1E-06 38.7 5.6 95 6-100 212-312 (434)
115 PF09069 EF-hand_3: EF-hand; 94.3 0.59 1.3E-05 28.5 7.3 61 71-133 3-74 (90)
116 KOG2243 Ca2+ release channel ( 93.7 0.12 2.5E-06 46.1 4.6 58 9-67 4061-4118(5019)
117 PF05042 Caleosin: Caleosin re 93.6 0.47 1E-05 32.4 6.5 31 104-134 94-124 (174)
118 KOG0998 Synaptic vesicle prote 93.5 0.11 2.4E-06 44.5 4.2 62 3-67 127-188 (847)
119 KOG2243 Ca2+ release channel ( 93.4 0.31 6.7E-06 43.6 6.6 58 74-132 4060-4118(5019)
120 KOG4578 Uncharacterized conser 92.5 0.074 1.6E-06 39.9 1.6 22 75-96 374-396 (421)
121 KOG0169 Phosphoinositide-speci 92.4 0.28 6.2E-06 40.8 4.9 89 41-133 136-231 (746)
122 KOG4578 Uncharacterized conser 92.4 0.11 2.3E-06 39.1 2.3 61 73-133 335-397 (421)
123 KOG3555 Ca2+-binding proteogly 91.8 0.37 8E-06 36.6 4.5 59 5-67 250-308 (434)
124 KOG0042 Glycerol-3-phosphate d 91.4 0.49 1.1E-05 38.4 5.0 67 3-69 591-657 (680)
125 KOG1955 Ral-GTPase effector RA 90.9 0.5 1.1E-05 37.7 4.6 57 75-133 235-292 (737)
126 KOG0042 Glycerol-3-phosphate d 89.8 0.76 1.6E-05 37.3 4.9 65 72-136 594-659 (680)
127 PLN02222 phosphoinositide phos 89.5 1.7 3.7E-05 35.8 6.7 61 72-133 26-89 (581)
128 KOG3866 DNA-binding protein of 89.1 1 2.2E-05 33.8 4.8 92 72-165 206-323 (442)
129 KOG4347 GTPase-activating prot 88.6 1.2 2.5E-05 36.8 5.2 51 41-92 555-612 (671)
130 PLN02952 phosphoinositide phos 88.0 6.5 0.00014 32.6 9.1 80 18-98 13-110 (599)
131 PF09069 EF-hand_3: EF-hand; 88.0 4.4 9.4E-05 24.7 7.6 62 4-68 2-74 (90)
132 PLN02230 phosphoinositide phos 87.4 3.4 7.4E-05 34.2 7.2 64 71-134 29-102 (598)
133 PLN02228 Phosphoinositide phos 87.2 3.7 7.9E-05 33.8 7.3 61 72-133 25-91 (567)
134 KOG3866 DNA-binding protein of 87.1 4.4 9.6E-05 30.6 7.0 60 74-133 247-323 (442)
135 PF08976 DUF1880: Domain of un 86.9 0.65 1.4E-05 29.5 2.3 31 103-133 4-34 (118)
136 PF07308 DUF1456: Protein of u 86.3 4.6 9.9E-05 23.2 5.9 49 87-135 14-62 (68)
137 KOG4347 GTPase-activating prot 86.0 0.92 2E-05 37.3 3.3 56 7-63 557-612 (671)
138 PF11116 DUF2624: Protein of u 85.1 6.2 0.00014 23.7 7.6 52 85-136 13-64 (85)
139 KOG1264 Phospholipase C [Lipid 85.1 6.4 0.00014 33.8 7.7 129 6-135 145-294 (1267)
140 KOG1707 Predicted Ras related/ 85.0 6.8 0.00015 32.3 7.6 62 71-132 195-263 (625)
141 KOG0035 Ca2+-binding actin-bun 84.2 4.2 9.1E-05 35.1 6.4 65 71-135 747-817 (890)
142 PLN02223 phosphoinositide phos 83.8 5.1 0.00011 32.7 6.5 64 71-134 16-92 (537)
143 PF08976 DUF1880: Domain of un 83.2 1.3 2.9E-05 28.2 2.5 33 37-69 3-35 (118)
144 PLN02228 Phosphoinositide phos 82.9 7.9 0.00017 31.9 7.3 64 2-67 21-90 (567)
145 PLN02222 phosphoinositide phos 81.0 8.4 0.00018 31.9 6.9 64 3-68 23-89 (581)
146 PF08726 EFhand_Ca_insen: Ca2+ 80.9 2.3 4.9E-05 24.6 2.7 55 3-65 4-65 (69)
147 PF11116 DUF2624: Protein of u 78.3 12 0.00027 22.5 7.8 49 20-68 13-61 (85)
148 KOG2871 Uncharacterized conser 77.3 2.2 4.7E-05 32.9 2.4 63 3-65 307-370 (449)
149 PF08461 HTH_12: Ribonuclease 76.8 5.3 0.00011 22.7 3.4 43 77-119 4-46 (66)
150 PLN02230 phosphoinositide phos 76.7 14 0.00031 30.7 7.0 65 3-68 27-101 (598)
151 cd07313 terB_like_2 tellurium 76.6 15 0.00032 22.5 6.2 50 19-68 13-64 (104)
152 PF01023 S_100: S-100/ICaBP ty 76.3 8.9 0.00019 19.9 4.9 28 71-98 6-36 (44)
153 PF08414 NADPH_Ox: Respiratory 75.5 12 0.00026 23.3 4.8 57 41-99 30-93 (100)
154 KOG3449 60S acidic ribosomal p 73.0 16 0.00035 23.0 5.0 42 75-116 5-47 (112)
155 PF12174 RST: RCD1-SRO-TAF4 (R 72.6 4.2 9.1E-05 23.5 2.3 27 72-98 26-53 (70)
156 PLN02223 phosphoinositide phos 70.0 26 0.00056 28.8 6.9 66 2-68 13-91 (537)
157 TIGR01639 P_fal_TIGR01639 Plas 69.3 18 0.00038 20.2 5.4 47 85-136 8-54 (61)
158 PF00404 Dockerin_1: Dockerin 69.0 6.7 0.00014 16.9 2.0 16 15-30 1-16 (21)
159 PF07879 PHB_acc_N: PHB/PHA ac 68.7 12 0.00027 21.1 3.5 38 78-115 10-58 (64)
160 KOG3077 Uncharacterized conser 68.0 47 0.001 24.6 11.5 65 4-68 63-128 (260)
161 KOG1265 Phospholipase C [Lipid 66.9 33 0.00071 30.1 7.0 65 4-68 220-298 (1189)
162 PF03672 UPF0154: Uncharacteri 64.3 22 0.00048 20.1 4.0 33 19-51 29-61 (64)
163 PF04157 EAP30: EAP30/Vps36 fa 62.0 56 0.0012 23.4 8.8 61 59-121 87-151 (223)
164 PTZ00373 60S Acidic ribosomal 61.2 40 0.00087 21.5 6.6 50 76-130 8-58 (112)
165 TIGR03798 ocin_TIGR03798 bacte 60.8 28 0.0006 19.5 5.4 46 60-111 4-49 (64)
166 cd08315 Death_TRAILR_DR4_DR5 D 60.0 38 0.00083 20.8 9.3 89 3-113 2-91 (96)
167 KOG4004 Matricellular protein 60.0 5.9 0.00013 27.9 1.5 25 108-132 224-248 (259)
168 KOG4403 Cell surface glycoprot 59.9 14 0.0003 29.3 3.5 80 17-99 40-130 (575)
169 PRK09430 djlA Dna-J like membr 59.4 71 0.0015 23.7 9.1 96 18-115 68-175 (267)
170 PRK00523 hypothetical protein; 59.2 31 0.00067 20.1 4.1 32 19-50 37-68 (72)
171 COG3763 Uncharacterized protei 57.7 30 0.00065 20.0 3.8 33 19-51 36-68 (71)
172 KOG2871 Uncharacterized conser 57.2 12 0.00026 29.1 2.8 61 71-131 309-371 (449)
173 cd04411 Ribosomal_P1_P2_L12p R 56.6 47 0.001 20.9 6.8 39 87-130 17-55 (105)
174 TIGR01848 PHA_reg_PhaR polyhyd 56.5 48 0.001 20.9 5.0 15 83-97 16-30 (107)
175 PF03979 Sigma70_r1_1: Sigma-7 55.8 20 0.00044 21.2 3.2 46 4-53 6-51 (82)
176 PF07862 Nif11: Nitrogen fixat 55.7 29 0.00063 18.1 4.4 21 88-108 28-48 (49)
177 PF07308 DUF1456: Protein of u 55.3 38 0.00083 19.4 5.0 32 22-53 14-45 (68)
178 PF09336 Vps4_C: Vps4 C termin 55.2 20 0.00043 20.1 2.9 26 86-111 29-54 (62)
179 KOG4004 Matricellular protein 55.0 6.2 0.00013 27.8 0.9 23 43-65 224-246 (259)
180 TIGR03573 WbuX N-acetyl sugar 54.9 34 0.00075 26.3 5.0 42 84-131 300-341 (343)
181 PF09415 CENP-X: CENP-S associ 53.9 42 0.00092 19.5 4.9 58 41-98 3-67 (72)
182 PHA02335 hypothetical protein 53.5 31 0.00067 21.7 3.7 30 122-151 24-53 (118)
183 KOG1954 Endocytosis/signaling 51.6 38 0.00082 26.7 4.6 56 7-65 446-501 (532)
184 KOG4286 Dystrophin-like protei 51.4 63 0.0014 27.9 6.1 44 11-54 476-519 (966)
185 PRK01844 hypothetical protein; 50.6 46 0.001 19.3 3.9 32 19-50 36-67 (72)
186 PHA02105 hypothetical protein 49.4 30 0.00066 19.1 2.8 51 86-136 4-59 (68)
187 KOG3449 60S acidic ribosomal p 48.5 69 0.0015 20.3 5.0 54 7-65 3-56 (112)
188 PF09068 EF-hand_2: EF hand; 47.6 77 0.0017 20.6 8.6 24 74-97 100-124 (127)
189 KOG2301 Voltage-gated Ca2+ cha 46.9 21 0.00045 33.4 3.1 66 2-68 1414-1483(1592)
190 PF14513 DAG_kinase_N: Diacylg 46.9 84 0.0018 20.9 6.9 32 85-116 47-79 (138)
191 PRK06402 rpl12p 50S ribosomal 46.9 72 0.0016 20.1 6.7 37 79-116 10-46 (106)
192 smart00513 SAP Putative DNA-bi 46.8 29 0.00063 16.7 2.4 19 86-104 3-21 (35)
193 PF06648 DUF1160: Protein of u 46.0 53 0.0011 21.3 4.1 46 71-118 37-83 (122)
194 cd05833 Ribosomal_P2 Ribosomal 45.9 76 0.0017 20.1 6.6 50 76-130 6-56 (109)
195 PF13623 SurA_N_2: SurA N-term 45.3 91 0.002 20.8 7.0 40 92-131 95-144 (145)
196 PTZ00373 60S Acidic ribosomal 45.0 81 0.0018 20.1 5.1 55 6-65 4-58 (112)
197 PF12995 DUF3879: Domain of un 44.9 81 0.0018 21.6 4.9 55 87-149 2-56 (186)
198 PF01885 PTS_2-RNA: RNA 2'-pho 43.3 62 0.0013 22.6 4.4 35 82-116 28-62 (186)
199 PF02337 Gag_p10: Retroviral G 43.1 77 0.0017 19.3 4.6 46 90-135 12-62 (90)
200 PF02037 SAP: SAP domain; Int 41.7 28 0.00061 16.9 1.9 19 86-104 3-21 (35)
201 TIGR02675 tape_meas_nterm tape 41.3 54 0.0012 19.1 3.3 16 83-98 27-42 (75)
202 PF09373 PMBR: Pseudomurein-bi 41.1 44 0.00095 16.0 3.1 21 120-140 2-22 (33)
203 PF12486 DUF3702: ImpA domain 40.7 98 0.0021 20.8 4.9 42 58-99 56-98 (148)
204 KOG2525 Folylpolyglutamate syn 40.6 47 0.001 27.0 3.8 45 58-102 19-66 (496)
205 PRK00819 RNA 2'-phosphotransfe 39.2 89 0.0019 21.7 4.6 32 83-114 30-61 (179)
206 PLN00138 large subunit ribosom 38.8 1E+02 0.0023 19.6 5.7 35 82-116 13-47 (113)
207 cd08316 Death_FAS_TNFRSF6 Deat 38.6 96 0.0021 19.2 7.2 78 20-114 16-94 (97)
208 cd05833 Ribosomal_P2 Ribosomal 38.2 1E+02 0.0023 19.5 5.1 53 8-65 4-56 (109)
209 KOG0039 Ferric reductase, NADH 38.0 74 0.0016 27.0 4.8 28 106-133 61-88 (646)
210 cd07894 Adenylation_RNA_ligase 37.6 58 0.0013 25.2 3.9 43 11-53 131-183 (342)
211 COG5069 SAC6 Ca2+-binding acti 37.3 86 0.0019 25.6 4.7 72 8-81 488-564 (612)
212 KOG4403 Cell surface glycoprot 37.2 1.1E+02 0.0025 24.5 5.3 46 53-98 40-96 (575)
213 PF12486 DUF3702: ImpA domain 36.9 1.3E+02 0.0028 20.2 7.6 40 3-42 67-110 (148)
214 TIGR03685 L21P_arch 50S riboso 36.3 1.1E+02 0.0024 19.2 5.6 37 79-116 10-46 (105)
215 KOG0506 Glutaminase (contains 36.1 2.3E+02 0.005 23.3 6.9 60 74-133 89-157 (622)
216 KOG0506 Glutaminase (contains 35.9 1.7E+02 0.0037 24.0 6.1 58 10-67 91-156 (622)
217 PF05099 TerB: Tellurite resis 35.7 44 0.00095 21.6 2.7 81 83-165 36-125 (140)
218 PRK13654 magnesium-protoporphy 35.2 71 0.0015 24.6 3.9 84 15-103 57-145 (355)
219 COG1460 Uncharacterized protei 34.6 75 0.0016 20.3 3.4 29 87-115 80-108 (114)
220 PRK14981 DNA-directed RNA poly 34.0 86 0.0019 19.9 3.7 27 88-114 80-106 (112)
221 PF12631 GTPase_Cys_C: Catalyt 33.9 96 0.0021 17.8 5.7 48 68-115 20-72 (73)
222 PF01475 FUR: Ferric uptake re 33.8 1.1E+02 0.0024 19.2 4.2 40 75-114 12-51 (120)
223 PF11848 DUF3368: Domain of un 33.4 77 0.0017 16.5 3.8 33 83-115 14-47 (48)
224 KOG0039 Ferric reductase, NADH 33.0 2E+02 0.0042 24.5 6.5 71 22-98 4-89 (646)
225 TIGR00135 gatC glutamyl-tRNA(G 33.0 95 0.0021 18.7 3.7 29 87-115 1-29 (93)
226 PRK03968 DNA primase large sub 32.7 1.3E+02 0.0029 23.6 5.0 46 17-68 117-162 (399)
227 COG2818 Tag 3-methyladenine DN 32.1 81 0.0017 22.1 3.5 45 66-110 50-95 (188)
228 PF01885 PTS_2-RNA: RNA 2'-pho 31.9 96 0.0021 21.6 3.9 36 16-51 27-62 (186)
229 PF06384 ICAT: Beta-catenin-in 31.8 71 0.0015 18.9 2.7 22 91-112 21-42 (78)
230 KOG1954 Endocytosis/signaling 31.7 1.3E+02 0.0028 24.0 4.8 58 72-131 445-502 (532)
231 cd07176 terB tellurite resista 31.6 1.2E+02 0.0027 18.4 4.5 16 19-34 16-31 (111)
232 COG2058 RPP1A Ribosomal protei 31.4 1.4E+02 0.003 18.9 5.7 48 78-130 8-55 (109)
233 TIGR01529 argR_whole arginine 31.4 1.6E+02 0.0035 19.6 4.8 36 82-117 12-47 (146)
234 cd05831 Ribosomal_P1 Ribosomal 30.5 1.4E+02 0.0031 18.6 5.1 34 83-116 14-47 (103)
235 cd05832 Ribosomal_L12p Ribosom 30.1 1.5E+02 0.0032 18.8 5.5 37 79-116 10-46 (106)
236 PF04876 Tenui_NCP: Tenuivirus 29.6 1.8E+02 0.0039 19.6 7.9 42 54-98 96-139 (175)
237 PF08671 SinI: Anti-repressor 28.7 53 0.0012 15.5 1.6 12 86-97 16-27 (30)
238 PRK00034 gatC aspartyl/glutamy 28.7 1.3E+02 0.0027 18.2 3.7 30 86-115 2-31 (95)
239 PF04558 tRNA_synt_1c_R1: Glut 28.6 68 0.0015 21.9 2.7 45 71-116 85-130 (164)
240 cd00076 H4 Histone H4, one of 28.4 1.4E+02 0.003 18.0 7.9 70 30-102 6-81 (85)
241 COG0735 Fur Fe2+/Zn2+ uptake r 28.4 1.8E+02 0.0039 19.2 4.7 16 25-40 6-21 (145)
242 PF00690 Cation_ATPase_N: Cati 28.1 82 0.0018 17.6 2.6 15 87-101 21-35 (69)
243 CHL00185 ycf59 magnesium-proto 28.0 88 0.0019 24.1 3.3 84 15-103 53-141 (351)
244 TIGR03573 WbuX N-acetyl sugar 27.5 1.6E+02 0.0034 22.7 4.8 53 33-96 284-342 (343)
245 cd07311 terB_like_1 tellurium 26.9 2E+02 0.0044 19.3 8.6 90 19-114 37-133 (150)
246 PF09107 SelB-wing_3: Elongati 26.4 1.1E+02 0.0025 16.2 3.2 30 19-53 8-37 (50)
247 cd01047 ACSF Aerobic Cyclase S 26.4 1.2E+02 0.0027 23.0 3.8 84 15-103 37-125 (323)
248 PF12419 DUF3670: SNF2 Helicas 26.3 1.9E+02 0.0042 19.0 4.5 49 83-131 80-138 (141)
249 COG0721 GatC Asp-tRNAAsn/Glu-t 26.2 1.4E+02 0.0031 18.3 3.6 30 86-115 2-31 (96)
250 PF10982 DUF2789: Protein of u 26.1 91 0.002 18.3 2.5 40 90-129 6-45 (74)
251 cd07153 Fur_like Ferric uptake 25.8 1.7E+02 0.0037 18.1 4.7 32 83-114 13-44 (116)
252 PRK00819 RNA 2'-phosphotransfe 25.8 1.7E+02 0.0036 20.4 4.2 33 17-49 29-61 (179)
253 PF01498 HTH_Tnp_Tc3_2: Transp 25.7 1E+02 0.0022 17.3 2.8 33 84-116 11-43 (72)
254 KOG4070 Putative signal transd 25.4 1.1E+02 0.0024 20.7 3.1 49 87-135 34-86 (180)
255 KOG1785 Tyrosine kinase negati 25.3 3.6E+02 0.0078 21.6 7.7 80 83-162 187-270 (563)
256 PF07499 RuvA_C: RuvA, C-termi 25.1 1.1E+02 0.0024 15.8 4.3 37 25-65 4-40 (47)
257 TIGR01446 DnaD_dom DnaD and ph 25.0 94 0.002 17.5 2.6 41 77-117 2-44 (73)
258 PF09454 Vps23_core: Vps23 cor 24.8 1.4E+02 0.0031 16.8 3.4 10 84-93 37-46 (65)
259 COG4359 Uncharacterized conser 24.6 2.6E+02 0.0057 19.8 5.8 13 19-31 11-23 (220)
260 PF13331 DUF4093: Domain of un 24.3 1.3E+02 0.0029 18.1 3.1 49 57-112 30-86 (87)
261 PF09682 Holin_LLH: Phage holi 24.2 1.8E+02 0.0039 18.2 3.9 25 91-115 76-100 (108)
262 cd07316 terB_like_DjlA N-termi 24.1 1.7E+02 0.0038 17.6 7.7 50 19-68 13-63 (106)
263 PF08044 DUF1707: Domain of un 24.0 1.3E+02 0.0027 16.3 2.7 30 83-112 20-49 (53)
264 PF10281 Ish1: Putative stress 23.9 1.1E+02 0.0023 15.0 2.5 16 88-103 5-20 (38)
265 PF09068 EF-hand_2: EF hand; 23.9 2.1E+02 0.0046 18.5 9.3 44 56-99 13-72 (127)
266 PF07128 DUF1380: Protein of u 23.8 1.4E+02 0.0031 19.8 3.4 31 87-117 27-57 (139)
267 PRK10391 oriC-binding nucleoid 23.2 1.4E+02 0.0029 17.3 2.8 26 90-115 17-43 (71)
268 PF08100 Dimerisation: Dimeris 23.1 53 0.0011 17.6 1.1 38 10-49 11-49 (51)
269 cd07357 HN_L-whirlin_R2_like S 22.9 1.2E+02 0.0027 18.0 2.7 31 103-133 16-46 (81)
270 TIGR01321 TrpR trp operon repr 22.5 2E+02 0.0043 17.7 3.6 30 103-132 33-65 (94)
271 KOG2301 Voltage-gated Ca2+ cha 22.5 84 0.0018 29.7 2.8 63 71-134 1417-1484(1592)
272 PLN02508 magnesium-protoporphy 22.4 1.3E+02 0.0029 23.2 3.4 84 15-103 53-141 (357)
273 PRK00441 argR arginine repress 22.3 2E+02 0.0044 19.2 4.0 34 83-116 15-48 (149)
274 PTZ00015 histone H4; Provision 21.4 2.2E+02 0.0048 17.8 8.4 77 26-102 19-98 (102)
275 KOG4286 Dystrophin-like protei 21.4 5.7E+02 0.012 22.5 11.3 136 24-164 402-578 (966)
276 PF01316 Arg_repressor: Argini 21.4 1.8E+02 0.0039 16.7 3.7 32 85-116 18-49 (70)
277 PRK11639 zinc uptake transcrip 21.3 1.9E+02 0.0041 19.7 3.8 15 26-40 12-26 (169)
278 PF13592 HTH_33: Winged helix- 21.3 1.6E+02 0.0034 16.1 3.6 31 86-116 4-35 (60)
279 PF11300 DUF3102: Protein of u 21.3 2.5E+02 0.0055 18.4 5.7 25 22-47 39-63 (130)
280 TIGR00624 tag DNA-3-methyladen 20.2 1.7E+02 0.0038 20.3 3.4 48 66-113 48-96 (179)
281 PF05819 NolX: NolX protein; 20.1 5.1E+02 0.011 21.5 9.4 121 9-132 303-480 (624)
No 1
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.97 E-value=3.2e-28 Score=166.48 Aligned_cols=162 Identities=31% Similarity=0.610 Sum_probs=154.6
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHcCCC-CCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHhhhh-C
Q 030933 5 AVLREWFDRVDSEKTGSIAAAQLKHAFAVGNL-DFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLE-R 82 (169)
Q Consensus 5 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~~~~~F~~~D-~ 82 (169)
..+..+|...|.+++|.|+.+|+..+|...+. +.+.+.|+.++.++|.+.+|+|.++||..+|+.++.++.+|+.|| +
T Consensus 57 ~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~Wr~vF~~~D~D 136 (221)
T KOG0037|consen 57 PQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYINQWRNVFRTYDRD 136 (221)
T ss_pred HHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHHHHHHhcccC
Confidence 46788999999999999999999999995443 788999999999999999999999999999999999999999999 7
Q ss_pred CCCeeeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHhhhCCCCceeEEeehhHHHH
Q 030933 83 GRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQSARNLFNSFDTAKQGRITLDLNQFIF 162 (169)
Q Consensus 83 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l~~~~~~~~~f~~~d~~~~g~i~~~~~~~~~ 162 (169)
++|.|+..||+++|..+|+.++++..+.++++++..+.|.|.+++|+.++..++.+.++|..+|.+..|.|+++.++|+.
T Consensus 137 ~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~~lt~~Fr~~D~~q~G~i~~~y~dfl~ 216 (221)
T KOG0037|consen 137 RSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQRLTEAFRRRDTAQQGSITISYDDFLQ 216 (221)
T ss_pred CCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHHHHHHHHHHhccccceeEEEeHHHHHH
Confidence 99999999999999999999999999999999997779999999999999999999999999999999999999999999
Q ss_pred Hhhh
Q 030933 163 CTAN 166 (169)
Q Consensus 163 ~~~~ 166 (169)
.+++
T Consensus 217 ~t~~ 220 (221)
T KOG0037|consen 217 MTMS 220 (221)
T ss_pred Hhhc
Confidence 8875
No 2
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.95 E-value=8.3e-27 Score=154.97 Aligned_cols=131 Identities=20% Similarity=0.338 Sum_probs=125.0
Q ss_pred ccHHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-------HHHHH
Q 030933 2 ENTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF-------LLKVQ 74 (169)
Q Consensus 2 ~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~-------~~~~~ 74 (169)
+++++++++|..+|++++|.|+..+|..+++.+|.+++..++.+++..++. +++.|+|.+|+.++.. .+++.
T Consensus 17 ~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~ 95 (160)
T COG5126 17 EQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELR 95 (160)
T ss_pred HHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHH
Confidence 578999999999999999999999999999999999999999999999998 8899999999998863 47999
Q ss_pred HHHhhhh-CCCCeeeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 030933 75 HAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCI 133 (169)
Q Consensus 75 ~~F~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l~ 133 (169)
.+|+.|| +++|+|+..+++.+++.+|..+++++++.+++.++.+++|.|+|++|...+.
T Consensus 96 ~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~ 155 (160)
T COG5126 96 EAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIK 155 (160)
T ss_pred HHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHh
Confidence 9999999 7999999999999999999999999999999999999999999999999764
No 3
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.94 E-value=2.3e-25 Score=150.08 Aligned_cols=132 Identities=22% Similarity=0.439 Sum_probs=125.4
Q ss_pred ccHHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH-----------
Q 030933 2 ENTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL----------- 70 (169)
Q Consensus 2 ~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~----------- 70 (169)
++..+++.+|..+|.+++|+|+..++..+++.+|..+++.++..++..+|.+++|.|++.+|+.++...
T Consensus 5 ~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~ 84 (151)
T KOG0027|consen 5 EQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASS 84 (151)
T ss_pred HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccH
Confidence 457889999999999999999999999999999999999999999999999999999999999988643
Q ss_pred HHHHHHHhhhh-CCCCeeeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 030933 71 LKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCI 133 (169)
Q Consensus 71 ~~~~~~F~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l~ 133 (169)
+.++.+|+.|| +++|+||.+||+++|..+|.+.+.+++..+++.++.+++|.|+|++|++++.
T Consensus 85 ~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~ 148 (151)
T KOG0027|consen 85 EELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMS 148 (151)
T ss_pred HHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHh
Confidence 38999999999 7999999999999999999999999999999999999999999999999875
No 4
>PTZ00184 calmodulin; Provisional
Probab=99.90 E-value=7.5e-22 Score=132.39 Aligned_cols=132 Identities=22% Similarity=0.402 Sum_probs=122.0
Q ss_pred ccHHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-------HHHHH
Q 030933 2 ENTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF-------LLKVQ 74 (169)
Q Consensus 2 ~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~-------~~~~~ 74 (169)
++.+.+...|..+|.+++|.|+..+|..++..++..++...+..++..++.+++|.|+|++|+..+.. .+.+.
T Consensus 8 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~ 87 (149)
T PTZ00184 8 EQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIK 87 (149)
T ss_pred HHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHH
Confidence 35678899999999999999999999999998888888899999999999999999999999998753 25789
Q ss_pred HHHhhhh-CCCCeeeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 030933 75 HAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCI 133 (169)
Q Consensus 75 ~~F~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l~ 133 (169)
.+|+.+| +++|.|+.+++..++..+|.+++.+++..+++.++.+++|.|+|+||+.++.
T Consensus 88 ~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 88 EAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 9999999 7999999999999999999999999999999999999999999999998875
No 5
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=4.4e-22 Score=129.99 Aligned_cols=132 Identities=19% Similarity=0.348 Sum_probs=124.8
Q ss_pred ccHHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-------HHHHH
Q 030933 2 ENTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF-------LLKVQ 74 (169)
Q Consensus 2 ~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~-------~~~~~ 74 (169)
++.++++..|..+|++++|+|+..||+.+++++|..+...++.+++..+|.++.|.|+|++|...+.. .+++.
T Consensus 30 ~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~ 109 (172)
T KOG0028|consen 30 EQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIK 109 (172)
T ss_pred HHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999998642 47899
Q ss_pred HHHhhhh-CCCCeeeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 030933 75 HAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCI 133 (169)
Q Consensus 75 ~~F~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l~ 133 (169)
.+|+.+| +++|.||..+|+.+.+.+|.+++++++.+++..++.+++|.|+.+||..++.
T Consensus 110 ~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk 169 (172)
T KOG0028|consen 110 KAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMK 169 (172)
T ss_pred HHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHh
Confidence 9999999 7999999999999999999999999999999999999999999999998865
No 6
>PTZ00183 centrin; Provisional
Probab=99.89 E-value=1.4e-21 Score=132.40 Aligned_cols=133 Identities=22% Similarity=0.357 Sum_probs=123.2
Q ss_pred ccHHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-------HHHHH
Q 030933 2 ENTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF-------LLKVQ 74 (169)
Q Consensus 2 ~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~-------~~~~~ 74 (169)
++.+++..+|..+|.+++|.|+..||..++..++..++...+..++..+|.+++|.|+|.+|+..+.. .+.+.
T Consensus 14 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~ 93 (158)
T PTZ00183 14 DQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEIL 93 (158)
T ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHH
Confidence 36788999999999999999999999999999888888999999999999999999999999997653 35789
Q ss_pred HHHhhhh-CCCCeeeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 030933 75 HAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIF 134 (169)
Q Consensus 75 ~~F~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l~~ 134 (169)
.+|+.+| +++|.|+.+||..++..+|.+++.+++..++..++.+++|.|+|++|..++..
T Consensus 94 ~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 94 KAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 9999999 79999999999999999999999999999999999999999999999998754
No 7
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.85 E-value=6.6e-20 Score=117.12 Aligned_cols=132 Identities=14% Similarity=0.241 Sum_probs=120.7
Q ss_pred CccHHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHHhcCC--CCCcccHHHHHHHHHHH--------
Q 030933 1 MENTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFD--RNGTMSFEEFVELNKFL-------- 70 (169)
Q Consensus 1 ~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~--~~~~i~~~eF~~~~~~~-------- 70 (169)
+++..+++.+|..+|..++|+|+..+...+|+.+|.+++..++.+....+..+ +-.+++|++|+.++...
T Consensus 7 ~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t 86 (152)
T KOG0030|consen 7 PDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGT 86 (152)
T ss_pred cchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCc
Confidence 46778999999999999999999999999999999999999999999988776 44789999999998654
Q ss_pred -HHHHHHHhhhh-CCCCeeeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 030933 71 -LKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCI 133 (169)
Q Consensus 71 -~~~~~~F~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l~ 133 (169)
+.+.+.++.+| .++|.|...||+++|..+|..+++++++.++.... |++|.|.|+.|++.+.
T Consensus 87 ~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~e-D~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 87 YEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQE-DSNGCINYEAFVKHIM 150 (152)
T ss_pred HHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHcccc-ccCCcCcHHHHHHHHh
Confidence 67889999999 69999999999999999999999999999999876 8889999999998754
No 8
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.83 E-value=1e-18 Score=113.51 Aligned_cols=127 Identities=18% Similarity=0.277 Sum_probs=118.8
Q ss_pred cHHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHH-------HHHHHHH
Q 030933 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNK-------FLLKVQH 75 (169)
Q Consensus 3 ~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~-------~~~~~~~ 75 (169)
++++++++|..+|+|++|.|..++++..+.++|...+++++..++. ...|.|+|.-|+.++. +.+.+..
T Consensus 30 QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~----Ea~gPINft~FLTmfGekL~gtdpe~~I~~ 105 (171)
T KOG0031|consen 30 QIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMK----EAPGPINFTVFLTMFGEKLNGTDPEEVILN 105 (171)
T ss_pred HHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHH----hCCCCeeHHHHHHHHHHHhcCCCHHHHHHH
Confidence 6889999999999999999999999999999999999999999988 4568999999999875 3478999
Q ss_pred HHhhhh-CCCCeeeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 030933 76 AFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCI 133 (169)
Q Consensus 76 ~F~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l~ 133 (169)
+|+.|| .+.|.|..+.|+.+|...|..+++++++.+++.+..+..|.++|.+|+..+.
T Consensus 106 AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 106 AFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 999999 5999999999999999999999999999999999999999999999998875
No 9
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.79 E-value=5.8e-18 Score=125.81 Aligned_cols=133 Identities=17% Similarity=0.346 Sum_probs=123.8
Q ss_pred cHHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCC-CCHHHHHHHHHHhcCCCCCcccHHHHHHHHH-HHHHHHHHHhhh
Q 030933 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLD-FSLSVVQQMIRMYDFDRNGTMSFEEFVELNK-FLLKVQHAFSDL 80 (169)
Q Consensus 3 ~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~-~~~~~~~~F~~~ 80 (169)
...+++.+|..+|.+++|.++..++.+.+..+..+ ++.+.++.++..+|.+.+|.|+|.||.+++. ++.++..+|+..
T Consensus 12 r~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~l~~~F~~i 91 (463)
T KOG0036|consen 12 RDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKELELYRIFQSI 91 (463)
T ss_pred HHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhHHHHHHHHhhh
Confidence 45678899999999999999999999999998887 7778889999999999999999999999886 567899999999
Q ss_pred h-CCCCeeeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 030933 81 E-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFL 135 (169)
Q Consensus 81 D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l~~~ 135 (169)
| +++|.|...|+.+.|+.+|.+++++..+.+++.+|+++.+.|+++||..++...
T Consensus 92 D~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~ 147 (463)
T KOG0036|consen 92 DLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLY 147 (463)
T ss_pred ccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcC
Confidence 9 799999999999999999999999999999999999999999999999998644
No 10
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.75 E-value=7.5e-17 Score=110.88 Aligned_cols=134 Identities=22% Similarity=0.383 Sum_probs=110.9
Q ss_pred cHHHHHHHHHhhCCC-CCCcccHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCCc-ccHHHHHHHHHH-------HHHH
Q 030933 3 NTAVLREWFDRVDSE-KTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGT-MSFEEFVELNKF-------LLKV 73 (169)
Q Consensus 3 ~~~~l~~~F~~~D~~-~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~-i~~~eF~~~~~~-------~~~~ 73 (169)
++..+...|..+|.+ +.|.++.+||..+... ..+ ....+++..++.+++|. |+|++|+..+.. .+++
T Consensus 31 EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~-~~N---p~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl 106 (187)
T KOG0034|consen 31 EIERLYERFKKLDRNNGDGYLTKEEFLSIPEL-ALN---PLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKL 106 (187)
T ss_pred HHHHHHHHHHHhccccccCccCHHHHHHHHHH-hcC---cHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHH
Confidence 567788899999999 9999999999999843 222 34578899999888887 999999998753 3589
Q ss_pred HHHHhhhh-CCCCeeeHHHHHHHHHHc-CCCCC--HH----HHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHH
Q 030933 74 QHAFSDLE-RGRGYLVPDNVYEALVKI-GFSLD--SP----AFYTVCESFDQNKNGRLRLDDFISLCIFLQSARN 140 (169)
Q Consensus 74 ~~~F~~~D-~~~g~i~~~el~~~l~~~-~~~~~--~~----~~~~~~~~~d~~~~~~i~~~eF~~~l~~~~~~~~ 140 (169)
+-+|+.|| +++|+|+.+|+.+++..+ |...+ ++ .++.++..+|.++||.|+++||.+++...|.+.+
T Consensus 107 ~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~P~~~~ 181 (187)
T KOG0034|consen 107 RFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQPDLLE 181 (187)
T ss_pred HHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCccHHH
Confidence 99999999 899999999999999986 44444 33 3677788999999999999999999877655544
No 11
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.73 E-value=3.3e-16 Score=107.81 Aligned_cols=143 Identities=20% Similarity=0.387 Sum_probs=119.3
Q ss_pred cHHHHHHHHHhhCCC-CCCcccHHHHHHHHHcCCC-CCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHH------HHHHH
Q 030933 3 NTAVLREWFDRVDSE-KTGSIAAAQLKHAFAVGNL-DFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF------LLKVQ 74 (169)
Q Consensus 3 ~~~~l~~~F~~~D~~-~~g~i~~~e~~~~l~~~~~-~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~------~~~~~ 74 (169)
+.+++..+++.+-.+ .+|.++..+|+.++..+.. +-+...+..+|+.+|.+++|.|+|.||+..++. .+.+.
T Consensus 24 ~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~ 103 (193)
T KOG0044|consen 24 SKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLK 103 (193)
T ss_pred CHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhh
Confidence 457788888888665 4899999999999998765 455677899999999999999999999998764 36788
Q ss_pred HHHhhhh-CCCCeeeHHHHHHHHHHc----CC-------CCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHH
Q 030933 75 HAFSDLE-RGRGYLVPDNVYEALVKI----GF-------SLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQSARNLF 142 (169)
Q Consensus 75 ~~F~~~D-~~~g~i~~~el~~~l~~~----~~-------~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l~~~~~~~~~f 142 (169)
.+|+.|| +++|+|+.+|+..++..+ |. ....+.++.+|+.+|.|.||.||++||......-+.+...+
T Consensus 104 w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d~~i~~~l 183 (193)
T KOG0044|consen 104 WAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKADPSILRAL 183 (193)
T ss_pred hhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhhCHHHHHHh
Confidence 8899999 899999999999999874 32 12356689999999999999999999999988777766665
Q ss_pred hhh
Q 030933 143 NSF 145 (169)
Q Consensus 143 ~~~ 145 (169)
..+
T Consensus 184 ~~~ 186 (193)
T KOG0044|consen 184 EQD 186 (193)
T ss_pred hhc
Confidence 543
No 12
>PTZ00183 centrin; Provisional
Probab=99.61 E-value=9.7e-14 Score=93.89 Aligned_cols=124 Identities=17% Similarity=0.323 Sum_probs=106.6
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHH------HHHHHHHhhhh-CCCCeeeHHHHHHHHHHc-CCCCCHHHHHHHH
Q 030933 41 SVVQQMIRMYDFDRNGTMSFEEFVELNKFL------LKVQHAFSDLE-RGRGYLVPDNVYEALVKI-GFSLDSPAFYTVC 112 (169)
Q Consensus 41 ~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~------~~~~~~F~~~D-~~~g~i~~~el~~~l~~~-~~~~~~~~~~~~~ 112 (169)
.++..+|..+|.+++|.|++.+|..++... ..+..+|..+| +++|.|+.++|..++... ......+.+..+|
T Consensus 17 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F 96 (158)
T PTZ00183 17 KEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAF 96 (158)
T ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 567788999999999999999999987643 56889999999 699999999999988764 3345677899999
Q ss_pred HhcCCCCCCcccHHHHHHHHHHH------HHHHHHHhhhCCCCceeEEeehhHHHHHhhh
Q 030933 113 ESFDQNKNGRLRLDDFISLCIFL------QSARNLFNSFDTAKQGRITLDLNQFIFCTAN 166 (169)
Q Consensus 113 ~~~d~~~~~~i~~~eF~~~l~~~------~~~~~~f~~~d~~~~g~i~~~~~~~~~~~~~ 166 (169)
+.+|.+++|.|+.++|..++... ..+..+|..+|.+++|.| ++.+|+..+..
T Consensus 97 ~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i--~~~ef~~~~~~ 154 (158)
T PTZ00183 97 RLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEI--SEEEFYRIMKK 154 (158)
T ss_pred HHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcC--cHHHHHHHHhc
Confidence 99999999999999999998753 347789999999999988 99999988754
No 13
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.58 E-value=2.2e-13 Score=91.75 Aligned_cols=125 Identities=15% Similarity=0.368 Sum_probs=108.7
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHH------HHHHHHHhhhh-CCCCeeeHHHHHHHHHHcCCCC-----CHHH
Q 030933 40 LSVVQQMIRMYDFDRNGTMSFEEFVELNKFL------LKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSL-----DSPA 107 (169)
Q Consensus 40 ~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~------~~~~~~F~~~D-~~~g~i~~~el~~~l~~~~~~~-----~~~~ 107 (169)
..++..+|..+|.+++|.|+-.++..+++.+ ..+..++..+| +++|.|+.++|..++...+... +.++
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~e 86 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEE 86 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHH
Confidence 4668899999999999999999999988753 78999999999 7999999999999999875432 3458
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHHH------HHHHHHHhhhCCCCceeEEeehhHHHHHhhh
Q 030933 108 FYTVCESFDQNKNGRLRLDDFISLCIFL------QSARNLFNSFDTAKQGRITLDLNQFIFCTAN 166 (169)
Q Consensus 108 ~~~~~~~~d~~~~~~i~~~eF~~~l~~~------~~~~~~f~~~d~~~~g~i~~~~~~~~~~~~~ 166 (169)
+...|+.+|.+++|.||+.|+..+|..+ ......+...|.+++|.| ++.+|+.....
T Consensus 87 l~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i--~f~ef~~~m~~ 149 (151)
T KOG0027|consen 87 LKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKV--NFEEFVKMMSG 149 (151)
T ss_pred HHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeE--eHHHHHHHHhc
Confidence 9999999999999999999999999865 456788999999999999 88999887653
No 14
>PTZ00184 calmodulin; Provisional
Probab=99.56 E-value=3.5e-13 Score=90.13 Aligned_cols=123 Identities=15% Similarity=0.287 Sum_probs=104.3
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHH------HHHHHHHhhhh-CCCCeeeHHHHHHHHHHc-CCCCCHHHHHHHH
Q 030933 41 SVVQQMIRMYDFDRNGTMSFEEFVELNKFL------LKVQHAFSDLE-RGRGYLVPDNVYEALVKI-GFSLDSPAFYTVC 112 (169)
Q Consensus 41 ~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~------~~~~~~F~~~D-~~~g~i~~~el~~~l~~~-~~~~~~~~~~~~~ 112 (169)
+.+...|..+|.+++|.|++.+|..++... +.+..+|..+| +++|.|+.++|..++... ......+.+..+|
T Consensus 11 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F 90 (149)
T PTZ00184 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAF 90 (149)
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 456788899999999999999999887542 57899999999 689999999999998864 3334567788999
Q ss_pred HhcCCCCCCcccHHHHHHHHHHH------HHHHHHHhhhCCCCceeEEeehhHHHHHhh
Q 030933 113 ESFDQNKNGRLRLDDFISLCIFL------QSARNLFNSFDTAKQGRITLDLNQFIFCTA 165 (169)
Q Consensus 113 ~~~d~~~~~~i~~~eF~~~l~~~------~~~~~~f~~~d~~~~g~i~~~~~~~~~~~~ 165 (169)
+.+|.+++|.|+.++|..++... ..+..++..+|.+++|.| ++.+|+..+.
T Consensus 91 ~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i--~~~ef~~~~~ 147 (149)
T PTZ00184 91 KVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQI--NYEEFVKMMM 147 (149)
T ss_pred HhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcC--cHHHHHHHHh
Confidence 99999999999999999988654 346778999999999988 9999998765
No 15
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.54 E-value=8.8e-13 Score=88.11 Aligned_cols=124 Identities=13% Similarity=0.278 Sum_probs=108.1
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHH------HHHHHHHHhhhhCCCCeeeHHHHHHHHHHc-CCCCCHHHHHHHHH
Q 030933 41 SVVQQMIRMYDFDRNGTMSFEEFVELNKF------LLKVQHAFSDLERGRGYLVPDNVYEALVKI-GFSLDSPAFYTVCE 113 (169)
Q Consensus 41 ~~~~~l~~~~d~~~~~~i~~~eF~~~~~~------~~~~~~~F~~~D~~~g~i~~~el~~~l~~~-~~~~~~~~~~~~~~ 113 (169)
++++..|..+|.+++|.|++.++..+++. ...+..+|..+|.++|.|+..+|..++... +..-+.+++...|+
T Consensus 20 ~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~ 99 (160)
T COG5126 20 QELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDAGNETVDFPEFLTVMSVKLKRGDKEEELREAFK 99 (160)
T ss_pred HHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccCCCCccCHHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 45677888899999999999999999864 367888999888888999999999999875 34566899999999
Q ss_pred hcCCCCCCcccHHHHHHHHHHH------HHHHHHHhhhCCCCceeEEeehhHHHHHhhh
Q 030933 114 SFDQNKNGRLRLDDFISLCIFL------QSARNLFNSFDTAKQGRITLDLNQFIFCTAN 166 (169)
Q Consensus 114 ~~d~~~~~~i~~~eF~~~l~~~------~~~~~~f~~~d~~~~g~i~~~~~~~~~~~~~ 166 (169)
.+|.|++|.|+..+++..+..+ +.+.+++..+|++++|.| ++++|+...+.
T Consensus 100 ~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i--~~~eF~~~~~~ 156 (160)
T COG5126 100 LFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEI--DYEEFKKLIKD 156 (160)
T ss_pred HhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceE--eHHHHHHHHhc
Confidence 9999999999999999999865 457889999999999999 99999986653
No 16
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=1.2e-13 Score=100.38 Aligned_cols=157 Identities=18% Similarity=0.335 Sum_probs=128.0
Q ss_pred cHHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-------------
Q 030933 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF------------- 69 (169)
Q Consensus 3 ~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~------------- 69 (169)
...++..++..+|.+++|.|+..|+..++..........+..+-+..+|.+.+|.|+|+++...+-.
T Consensus 75 ~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~ 154 (325)
T KOG4223|consen 75 SQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEED 154 (325)
T ss_pred hHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchh
Confidence 4677889999999999999999999999987655666677888889999999999999999986431
Q ss_pred -------HHHHHHHHhhhh-CCCCeeeHHHHHHHHHHcCCC-CCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH----
Q 030933 70 -------LLKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFS-LDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQ---- 136 (169)
Q Consensus 70 -------~~~~~~~F~~~D-~~~g~i~~~el~~~l~~~~~~-~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l~~~~---- 136 (169)
...-+.-|+..| +++|.++.+||..+|..-..+ +.+=.+.+.+...|+|+||.|+++||+.-+....
T Consensus 155 ~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~ 234 (325)
T KOG4223|consen 155 NEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEE 234 (325)
T ss_pred cHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCC
Confidence 135678899999 799999999999999876433 6666788889999999999999999999876432
Q ss_pred ------H-HHHHHhhhCCCCceeEEeehhHHH
Q 030933 137 ------S-ARNLFNSFDTAKQGRITLDLNQFI 161 (169)
Q Consensus 137 ------~-~~~~f~~~d~~~~g~i~~~~~~~~ 161 (169)
. -...+..+|+|++|++ +..|-.
T Consensus 235 epeWv~~Ere~F~~~~DknkDG~L--~~dEl~ 264 (325)
T KOG4223|consen 235 EPEWVLTEREQFFEFRDKNKDGKL--DGDELL 264 (325)
T ss_pred CcccccccHHHHHHHhhcCCCCcc--CHHHHh
Confidence 1 2345677899999988 554443
No 17
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.48 E-value=5.5e-12 Score=87.04 Aligned_cols=142 Identities=17% Similarity=0.267 Sum_probs=115.4
Q ss_pred CcccHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCC-CCcccHHHHHHHHHH-------HHHHHHHHhhhh-CCCCeeeHH
Q 030933 20 GSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDR-NGTMSFEEFVELNKF-------LLKVQHAFSDLE-RGRGYLVPD 90 (169)
Q Consensus 20 g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~-~~~i~~~eF~~~~~~-------~~~~~~~F~~~D-~~~g~i~~~ 90 (169)
..++.+.+..+.+ ....+..+++..++.+-.+. +|.++-++|..++.. ..-...+|+.+| +++|.|+..
T Consensus 7 ~~~~~~~~e~l~~--~t~f~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~ 84 (193)
T KOG0044|consen 7 SKLQPESLEQLVQ--QTKFSKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFL 84 (193)
T ss_pred ccCCcHHHHHHHH--hcCCCHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHH
Confidence 4455555555554 34578899999999987765 899999999998864 356889999999 799999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH-----------------HHHHHHHhhhCCCCceeE
Q 030933 91 NVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFL-----------------QSARNLFNSFDTAKQGRI 153 (169)
Q Consensus 91 el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l~~~-----------------~~~~~~f~~~d~~~~g~i 153 (169)
||..+|+.+--....+-+.=.|+.+|.|++|.|+++|++.++..+ .....+|+.+|.|++|.+
T Consensus 85 Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~l 164 (193)
T KOG0044|consen 85 EFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKL 164 (193)
T ss_pred HHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcc
Confidence 999999887555566667778999999999999999999987643 235678999999999999
Q ss_pred EeehhHHHHHhh
Q 030933 154 TLDLNQFIFCTA 165 (169)
Q Consensus 154 ~~~~~~~~~~~~ 165 (169)
|.++|+....
T Consensus 165 --T~eef~~~~~ 174 (193)
T KOG0044|consen 165 --TLEEFIEGCK 174 (193)
T ss_pred --cHHHHHHHhh
Confidence 9999998654
No 18
>PLN02964 phosphatidylserine decarboxylase
Probab=99.41 E-value=4.4e-12 Score=101.61 Aligned_cols=108 Identities=21% Similarity=0.338 Sum_probs=91.6
Q ss_pred ccHHHHHHHHHhhCCCCCCcccHHHHHHHHHcCC-CCCCHHH---HHHHHHHhcCCCCCcccHHHHHHHHHH------HH
Q 030933 2 ENTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGN-LDFSLSV---VQQMIRMYDFDRNGTMSFEEFVELNKF------LL 71 (169)
Q Consensus 2 ~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~---~~~l~~~~d~~~~~~i~~~eF~~~~~~------~~ 71 (169)
.+.+++.+.|..+|++++|.+ +..+++.++ ..+++.+ +..++..+|.+++|.|+++||+.++.. .+
T Consensus 140 kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seE 215 (644)
T PLN02964 140 QEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAAN 215 (644)
T ss_pred HHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHH
Confidence 356789999999999999997 888999999 4788776 899999999999999999999998864 35
Q ss_pred HHHHHHhhhh-CCCCeeeHHHHHHHHHH-------------cCCCCCH-HHHHHHHH
Q 030933 72 KVQHAFSDLE-RGRGYLVPDNVYEALVK-------------IGFSLDS-PAFYTVCE 113 (169)
Q Consensus 72 ~~~~~F~~~D-~~~g~i~~~el~~~l~~-------------~~~~~~~-~~~~~~~~ 113 (169)
++..+|+.+| +++|+|+.+||.+++.. +|.+++. +++..+++
T Consensus 216 EL~eaFk~fDkDgdG~Is~dEL~~vL~~~~~~~~~~~~cp~cg~~l~~~~~~~~iiH 272 (644)
T PLN02964 216 KKEELFKAADLNGDGVVTIDELAALLALQQEQEPIINNCPVCGEALGVSDKLNAMIH 272 (644)
T ss_pred HHHHHHHHhCCCCCCcCCHHHHHHHHHhcccCcchhhhchhhcCcccchhhHHHHHH
Confidence 7999999999 79999999999999998 4555555 55566653
No 19
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.40 E-value=5.2e-12 Score=87.22 Aligned_cols=85 Identities=21% Similarity=0.416 Sum_probs=72.7
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHhhhh-C
Q 030933 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLE-R 82 (169)
Q Consensus 4 ~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~~~~~F~~~D-~ 82 (169)
++.++.+|+.+|.|++|.|+..||+.+|..+|..++++-...++++++...+|.|.|++|+...-.+..+.++|+.+| +
T Consensus 123 i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~~lt~~Fr~~D~~ 202 (221)
T KOG0037|consen 123 INQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQRLTEAFRRRDTA 202 (221)
T ss_pred HHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHHHHHHHHHHhccc
Confidence 566788888899999999999999999999999999988889999998777888999999998888888889999988 5
Q ss_pred CCCeee
Q 030933 83 GRGYLV 88 (169)
Q Consensus 83 ~~g~i~ 88 (169)
..|.|+
T Consensus 203 q~G~i~ 208 (221)
T KOG0037|consen 203 QQGSIT 208 (221)
T ss_pred cceeEE
Confidence 666654
No 20
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.39 E-value=4.2e-12 Score=77.45 Aligned_cols=68 Identities=18% Similarity=0.266 Sum_probs=61.6
Q ss_pred HHHHHHHHHhhhhC--CCCeeeHHHHHHHHHH-cCCCCCH-HHHHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 030933 69 FLLKVQHAFSDLER--GRGYLVPDNVYEALVK-IGFSLDS-PAFYTVCESFDQNKNGRLRLDDFISLCIFLQ 136 (169)
Q Consensus 69 ~~~~~~~~F~~~D~--~~g~i~~~el~~~l~~-~~~~~~~-~~~~~~~~~~d~~~~~~i~~~eF~~~l~~~~ 136 (169)
....+..+|+.||. ++|+|+.+||+.++.. +|..++. ++++.+++..|.|+||.|+|+||+.++..+.
T Consensus 6 ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 6 AIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 34578999999996 8999999999999999 8877888 9999999999999999999999999987663
No 21
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.37 E-value=4.2e-12 Score=73.49 Aligned_cols=61 Identities=23% Similarity=0.619 Sum_probs=53.1
Q ss_pred HHHHHHhhhh-CCCCeeeHHHHHHHHHHcCCCCCHHH----HHHHHHhcCCCCCCcccHHHHHHHH
Q 030933 72 KVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPA----FYTVCESFDQNKNGRLRLDDFISLC 132 (169)
Q Consensus 72 ~~~~~F~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~----~~~~~~~~d~~~~~~i~~~eF~~~l 132 (169)
+++.+|+.+| +++|+|+.+||..++..++...+.+. ++.+++.+|.+++|.|+++||..++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 4688999999 79999999999999999987665544 5555999999999999999999874
No 22
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.35 E-value=5.4e-12 Score=73.04 Aligned_cols=62 Identities=31% Similarity=0.550 Sum_probs=53.9
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCCCH----HHHHHHHHHhcCCCCCcccHHHHHHHH
Q 030933 6 VLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSL----SVVQQMIRMYDFDRNGTMSFEEFVELN 67 (169)
Q Consensus 6 ~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~----~~~~~l~~~~d~~~~~~i~~~eF~~~~ 67 (169)
+|+.+|..+|.+++|+|+..||..++..++...+. ..+..+++.+|.+++|.|+|+||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 47899999999999999999999999998876655 445556999999999999999998763
No 23
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.34 E-value=8e-12 Score=76.20 Aligned_cols=67 Identities=19% Similarity=0.245 Sum_probs=61.4
Q ss_pred HHHHHHHHHhhCC-CCCCcccHHHHHHHHHc-CCCCCCH-HHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 030933 4 TAVLREWFDRVDS-EKTGSIAAAQLKHAFAV-GNLDFSL-SVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (169)
Q Consensus 4 ~~~l~~~F~~~D~-~~~g~i~~~e~~~~l~~-~~~~~~~-~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~ 70 (169)
+..+..+|+.+|+ +++|+|+..||+.++.. ++..++. .++..+++.+|.+++|.|+|+||+.++..+
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 5678899999999 99999999999999998 8876777 899999999999999999999999988654
No 24
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.33 E-value=4.7e-11 Score=90.25 Aligned_cols=130 Identities=14% Similarity=0.302 Sum_probs=104.9
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHcC-CCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-------------
Q 030933 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVG-NLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF------------- 69 (169)
Q Consensus 4 ~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~------------- 69 (169)
..++.+.|+.+|+..+|+|+..++..++... +++++...+.. +....+.+|.|.|.+-...+..
T Consensus 463 ~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~--kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slve 540 (631)
T KOG0377|consen 463 RSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRP--KLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVE 540 (631)
T ss_pred hhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhh--hccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHH
Confidence 4577889999999999999999999999863 55666544433 2233456778988887775431
Q ss_pred -----HHHHHHHHhhhh-CCCCeeeHHHHHHHHHHc----CCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 030933 70 -----LLKVQHAFSDLE-RGRGYLVPDNVYEALVKI----GFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFL 135 (169)
Q Consensus 70 -----~~~~~~~F~~~D-~~~g~i~~~el~~~l~~~----~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l~~~ 135 (169)
...+..+|..+| +++|.||.+||+.+++-+ ..+++++++.++.+.+|.|+||.|+++||+..+...
T Consensus 541 tLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 541 TLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred HHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 246889999999 899999999999999875 456899999999999999999999999999987644
No 25
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.29 E-value=8.3e-11 Score=71.78 Aligned_cols=70 Identities=20% Similarity=0.343 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhhhh-C-C-CCeeeHHHHHHHHHH---cCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHH
Q 030933 68 KFLLKVQHAFSDLE-R-G-RGYLVPDNVYEALVK---IGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQS 137 (169)
Q Consensus 68 ~~~~~~~~~F~~~D-~-~-~g~i~~~el~~~l~~---~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l~~~~~ 137 (169)
+....+..+|..|| + + +|+|+.+||++++.. +|.+++.++++.+++..|.+++|.|+|+||+.++..+..
T Consensus 7 ~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~~ 82 (88)
T cd05029 7 QAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALAL 82 (88)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHH
Confidence 34457889999999 4 5 789999999999974 688899999999999999999999999999999876654
No 26
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.28 E-value=4.1e-10 Score=77.72 Aligned_cols=128 Identities=14% Similarity=0.262 Sum_probs=103.4
Q ss_pred CCHHHHHH---HHHHhcCC-CCCcccHHHHHHHHHHH--HHHHHHHhhhh-CCCCe-eeHHHHHHHHHHcCCCCCHH-HH
Q 030933 38 FSLSVVQQ---MIRMYDFD-RNGTMSFEEFVELNKFL--LKVQHAFSDLE-RGRGY-LVPDNVYEALVKIGFSLDSP-AF 108 (169)
Q Consensus 38 ~~~~~~~~---l~~~~d~~-~~~~i~~~eF~~~~~~~--~~~~~~F~~~D-~~~g~-i~~~el~~~l~~~~~~~~~~-~~ 108 (169)
.+..++.. .|..++.. ++|.++.+||..+.... .-..+++..++ +++|. |+.++|.++|..+..+.+.+ .+
T Consensus 27 fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl 106 (187)
T KOG0034|consen 27 FSANEIERLYERFKKLDRNNGDGYLTKEEFLSIPELALNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKL 106 (187)
T ss_pred cCHHHHHHHHHHHHHhccccccCccCHHHHHHHHHHhcCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHH
Confidence 55556554 45666777 89999999999987432 45778899999 67777 99999999999887665555 78
Q ss_pred HHHHHhcCCCCCCcccHHHHHHHHHHHH-------------HHHHHHhhhCCCCceeEEeehhHHHHHhhhc
Q 030933 109 YTVCESFDQNKNGRLRLDDFISLCIFLQ-------------SARNLFNSFDTAKQGRITLDLNQFIFCTANC 167 (169)
Q Consensus 109 ~~~~~~~d~~~~~~i~~~eF~~~l~~~~-------------~~~~~f~~~d~~~~g~i~~~~~~~~~~~~~~ 167 (169)
.-.|+.||.+++|.|+.+|+..++..+- ....++..+|.+++|+| +++||...+...
T Consensus 107 ~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~I--sfeEf~~~v~~~ 176 (187)
T KOG0034|consen 107 RFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKI--SFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcC--cHHHHHHHHHcC
Confidence 8899999999999999999999886442 24567999999999999 999999887654
No 27
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.28 E-value=4.4e-11 Score=72.97 Aligned_cols=67 Identities=19% Similarity=0.284 Sum_probs=61.1
Q ss_pred HHHHHHHHHhhC-CCCCC-cccHHHHHHHHHc-----CCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 030933 4 TAVLREWFDRVD-SEKTG-SIAAAQLKHAFAV-----GNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (169)
Q Consensus 4 ~~~l~~~F~~~D-~~~~g-~i~~~e~~~~l~~-----~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~ 70 (169)
+..+.++|+.+| ++++| .|+..||+.+|+. ++..+++.++..+++.+|.+++|.|+|.+|+.++...
T Consensus 7 ~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 7 MVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 467899999998 79999 5999999999998 8888999999999999999999999999999987643
No 28
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=99.27 E-value=1.4e-10 Score=87.57 Aligned_cols=158 Identities=19% Similarity=0.363 Sum_probs=113.1
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHc------CCC----------CCCHHHHHHH-HHHhcCCCCCcccHHHHHHHH
Q 030933 5 AVLREWFDRVDSEKTGSIAAAQLKHAFAV------GNL----------DFSLSVVQQM-IRMYDFDRNGTMSFEEFVELN 67 (169)
Q Consensus 5 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~------~~~----------~~~~~~~~~l-~~~~d~~~~~~i~~~eF~~~~ 67 (169)
..+.-+|+.+|.|+||.|+.+||..+.+- .+. .........+ ..-|..++++++++++|++++
T Consensus 233 ~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~ 312 (489)
T KOG2643|consen 233 RNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQ 312 (489)
T ss_pred ccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHH
Confidence 34455799999999999999999998752 111 1111112222 334677899999999999999
Q ss_pred HHH--HHHHHHHhhhhC-CCCeeeHHHHHHHHHHc-CCCCCHH--HHHHHHHhcCCCCCCcccHHHHHHHHHHHHH----
Q 030933 68 KFL--LKVQHAFSDLER-GRGYLVPDNVYEALVKI-GFSLDSP--AFYTVCESFDQNKNGRLRLDDFISLCIFLQS---- 137 (169)
Q Consensus 68 ~~~--~~~~~~F~~~D~-~~g~i~~~el~~~l~~~-~~~~~~~--~~~~~~~~~d~~~~~~i~~~eF~~~l~~~~~---- 137 (169)
..+ +.++.-|..+|. .+|.|+..+|...+-.+ +.+.... .+..+-+.+... +..||++||..+...+.+
T Consensus 313 e~Lq~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl~~l~df 391 (489)
T KOG2643|consen 313 ENLQEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRFLNNLNDF 391 (489)
T ss_pred HHHHHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHHHhhhhHH
Confidence 866 457778999995 56999999999999876 3442222 344555566644 567999999988754421
Q ss_pred -----------------------------------HHHHHhhhCCCCceeEEeehhHHHHHhh
Q 030933 138 -----------------------------------ARNLFNSFDTAKQGRITLDLNQFIFCTA 165 (169)
Q Consensus 138 -----------------------------------~~~~f~~~d~~~~g~i~~~~~~~~~~~~ 165 (169)
+.-+|..+|.|++|.+ +.+||+....
T Consensus 392 d~Al~fy~~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~L--S~~EFl~Vmk 452 (489)
T KOG2643|consen 392 DIALRFYHMAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTL--SHKEFLAVMK 452 (489)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcc--cHHHHHHHHH
Confidence 1345778899999977 9999998764
No 29
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.25 E-value=1.3e-10 Score=70.85 Aligned_cols=68 Identities=15% Similarity=0.308 Sum_probs=60.6
Q ss_pred HHHHHHHHHhhhh-C-CCC-eeeHHHHHHHHHH-----cCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 030933 69 FLLKVQHAFSDLE-R-GRG-YLVPDNVYEALVK-----IGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQ 136 (169)
Q Consensus 69 ~~~~~~~~F~~~D-~-~~g-~i~~~el~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l~~~~ 136 (169)
....+..+|+.|| + ++| .|+.+||+.+|+. +|...++++++.+++.+|.|++|.|+|++|+.++..+.
T Consensus 6 ~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~ 81 (88)
T cd05027 6 AMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVT 81 (88)
T ss_pred HHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 3457899999998 4 899 6999999999999 88888999999999999999999999999998876543
No 30
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.23 E-value=1.3e-09 Score=71.91 Aligned_cols=123 Identities=15% Similarity=0.280 Sum_probs=104.8
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHH------HHHHHHHHHhhhh-CCCCeeeHHHHHHHHHH-cCCCCCHHHHHHHH
Q 030933 41 SVVQQMIRMYDFDRNGTMSFEEFVELNK------FLLKVQHAFSDLE-RGRGYLVPDNVYEALVK-IGFSLDSPAFYTVC 112 (169)
Q Consensus 41 ~~~~~l~~~~d~~~~~~i~~~eF~~~~~------~~~~~~~~F~~~D-~~~g~i~~~el~~~l~~-~~~~~~~~~~~~~~ 112 (169)
.+++..|..++++++|.|+++|+-..+. ..+++..+...+| .+.|.|+.++|+.++.. +|..-+.+++...|
T Consensus 33 q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~af 112 (172)
T KOG0028|consen 33 QEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAF 112 (172)
T ss_pred hhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHH
Confidence 6678899999999999999999944433 3467888889999 59999999999999765 56666999999999
Q ss_pred HhcCCCCCCcccHHHHHHHHHHHH------HHHHHHhhhCCCCceeEEeehhHHHHHhh
Q 030933 113 ESFDQNKNGRLRLDDFISLCIFLQ------SARNLFNSFDTAKQGRITLDLNQFIFCTA 165 (169)
Q Consensus 113 ~~~d~~~~~~i~~~eF~~~l~~~~------~~~~~f~~~d~~~~g~i~~~~~~~~~~~~ 165 (169)
+.+|.+.+|.||..+|......+. .+.+.....|.+++|-| +.++|+...+
T Consensus 113 rl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgev--neeEF~~imk 169 (172)
T KOG0028|consen 113 RLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEV--NEEEFIRIMK 169 (172)
T ss_pred HcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccc--cHHHHHHHHh
Confidence 999999999999999999887763 46777788999999977 9999987654
No 31
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=8.2e-11 Score=85.73 Aligned_cols=126 Identities=17% Similarity=0.225 Sum_probs=103.6
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHcCCC-CCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-----------HHHH
Q 030933 6 VLREWFDRVDSEKTGSIAAAQLKHAFAVGNL-DFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF-----------LLKV 73 (169)
Q Consensus 6 ~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~-----------~~~~ 73 (169)
+-...|+.+|.|++|.++..||..+|..--. .+..--++..+.-.|.|++|.|+++||+.-+-. +.+-
T Consensus 164 rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Er 243 (325)
T KOG4223|consen 164 RDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTER 243 (325)
T ss_pred HHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccccH
Confidence 3356799999999999999999999986544 344555677888899999999999999995421 1345
Q ss_pred HHHHhhhh-CCCCeeeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 030933 74 QHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISL 131 (169)
Q Consensus 74 ~~~F~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~ 131 (169)
.+.+..+| +++|+++.+|+++-+..-+......+..-++...|.|+||++|++|-+.-
T Consensus 244 e~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~~ 302 (325)
T KOG4223|consen 244 EQFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEILEH 302 (325)
T ss_pred HHHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHhhC
Confidence 57778889 69999999999977766667777888999999999999999999997763
No 32
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.22 E-value=9.7e-11 Score=65.00 Aligned_cols=52 Identities=25% Similarity=0.457 Sum_probs=49.0
Q ss_pred CCCeeeHHHHHHHHHHcCCC-CCHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 030933 83 GRGYLVPDNVYEALVKIGFS-LDSPAFYTVCESFDQNKNGRLRLDDFISLCIF 134 (169)
Q Consensus 83 ~~g~i~~~el~~~l~~~~~~-~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l~~ 134 (169)
.+|.|+.++|+.++..+|.+ +++++++.++..+|.+++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 37999999999999888999 99999999999999999999999999999864
No 33
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.20 E-value=1.8e-10 Score=74.74 Aligned_cols=100 Identities=20% Similarity=0.400 Sum_probs=84.0
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHH-------HHHHHHHhhhh-CCCCeeeHHHHHHHHHHcC-CCCCHHHH----HH
Q 030933 44 QQMIRMYDFDRNGTMSFEEFVELNKFL-------LKVQHAFSDLE-RGRGYLVPDNVYEALVKIG-FSLDSPAF----YT 110 (169)
Q Consensus 44 ~~l~~~~d~~~~~~i~~~eF~~~~~~~-------~~~~~~F~~~D-~~~g~i~~~el~~~l~~~~-~~~~~~~~----~~ 110 (169)
+++...+..++.|.++|++|+..+.-. -++..+|+.|| ++++.|-.+++.+.+..+- -.++++++ +.
T Consensus 74 ~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ek 153 (189)
T KOG0038|consen 74 RRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEK 153 (189)
T ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 577788889999999999999986532 35778999999 9999999999999999973 45888775 55
Q ss_pred HHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHh
Q 030933 111 VCESFDQNKNGRLRLDDFISLCIFLQSARNLFN 143 (169)
Q Consensus 111 ~~~~~d~~~~~~i~~~eF~~~l~~~~~~~~~f~ 143 (169)
++..+|.++||.+++.+|..++.+-+.+-..|+
T Consensus 154 vieEAD~DgDgkl~~~eFe~~i~raPDFlsTFH 186 (189)
T KOG0038|consen 154 VIEEADLDGDGKLSFAEFEHVILRAPDFLSTFH 186 (189)
T ss_pred HHHHhcCCCCCcccHHHHHHHHHhCcchHhhhe
Confidence 677899999999999999999887776665554
No 34
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.17 E-value=2e-10 Score=71.45 Aligned_cols=71 Identities=18% Similarity=0.377 Sum_probs=62.7
Q ss_pred ccHHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHH
Q 030933 2 ENTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFLLKVQ 74 (169)
Q Consensus 2 ~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~~~ 74 (169)
++...+..+|..+|.+++|.|+..+++.+++..+ ++..++..++..++.+++|.|+|+||+.++.......
T Consensus 7 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~ 77 (96)
T smart00027 7 EDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKL 77 (96)
T ss_pred HHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHH
Confidence 4677899999999999999999999999999855 6888999999999999999999999999887654433
No 35
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.17 E-value=3.1e-10 Score=69.25 Aligned_cols=67 Identities=15% Similarity=0.287 Sum_probs=59.5
Q ss_pred HHHHHHHHHhhCC-CC-CCcccHHHHHHHHH---cCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 030933 4 TAVLREWFDRVDS-EK-TGSIAAAQLKHAFA---VGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (169)
Q Consensus 4 ~~~l~~~F~~~D~-~~-~g~i~~~e~~~~l~---~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~ 70 (169)
+..|..+|+.||. ++ +|+|+..||+.+++ .+|..++++++..+++.+|.+++|.|+|+||+.++..+
T Consensus 9 ~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 9 IGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 4567889999997 66 89999999999996 36888999999999999999999999999999887654
No 36
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.16 E-value=6.8e-10 Score=68.50 Aligned_cols=67 Identities=21% Similarity=0.301 Sum_probs=58.8
Q ss_pred HHHHHHHHHhhC-CCCCC-cccHHHHHHHHHc-CC----CCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 030933 4 TAVLREWFDRVD-SEKTG-SIAAAQLKHAFAV-GN----LDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (169)
Q Consensus 4 ~~~l~~~F~~~D-~~~~g-~i~~~e~~~~l~~-~~----~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~ 70 (169)
+..++++|+.+| .+++| .|+..|++.+|+. ++ ..++.+++..++..+|.+++|.|+|.+|+.++..+
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 467899999997 99999 4999999999985 43 35688999999999999999999999999987654
No 37
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.15 E-value=5.6e-10 Score=69.13 Aligned_cols=68 Identities=24% Similarity=0.302 Sum_probs=59.9
Q ss_pred HHHHHHHHHhhCC-CC-CCcccHHHHHHHHHc-----CCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHH
Q 030933 4 TAVLREWFDRVDS-EK-TGSIAAAQLKHAFAV-----GNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFLL 71 (169)
Q Consensus 4 ~~~l~~~F~~~D~-~~-~g~i~~~e~~~~l~~-----~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~ 71 (169)
...+..+|..+|. ++ +|.|+..|++.+++. ++..++.+++..++..+|.+++|.|+|++|+.++....
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 4578899999997 87 699999999999986 46678899999999999999999999999999887543
No 38
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.15 E-value=7e-10 Score=68.50 Aligned_cols=70 Identities=19% Similarity=0.305 Sum_probs=58.7
Q ss_pred HHHHHHHHHhhhh-C-CCC-eeeHHHHHHHHHH-c----CCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHH
Q 030933 69 FLLKVQHAFSDLE-R-GRG-YLVPDNVYEALVK-I----GFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQSA 138 (169)
Q Consensus 69 ~~~~~~~~F~~~D-~-~~g-~i~~~el~~~l~~-~----~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l~~~~~~ 138 (169)
....+..+|+.|| . ++| +|+.+||+.++.. + +...++.+++.+++.+|.|++|.|+|+||+.++..+...
T Consensus 8 a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~~~ 85 (93)
T cd05026 8 AMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALTVA 85 (93)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHH
Confidence 3457889999999 4 787 6999999999977 3 334577899999999999999999999999998776543
No 39
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.15 E-value=4.4e-10 Score=69.39 Aligned_cols=67 Identities=19% Similarity=0.266 Sum_probs=57.3
Q ss_pred HHHHHHHHHhhC-CCCCC-cccHHHHHHHHHc-C----CCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 030933 4 TAVLREWFDRVD-SEKTG-SIAAAQLKHAFAV-G----NLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (169)
Q Consensus 4 ~~~l~~~F~~~D-~~~~g-~i~~~e~~~~l~~-~----~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~ 70 (169)
+..+..+|+.+| .+++| +|+..||+.++.. + +...++.++..++..+|.+++|.|+|+||+.++..+
T Consensus 9 ~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 9 MDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 456778899999 78998 5999999999976 2 334577899999999999999999999999988765
No 40
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.13 E-value=5.2e-10 Score=68.45 Aligned_cols=69 Identities=16% Similarity=0.286 Sum_probs=60.3
Q ss_pred ccHHHHHHHHHhhCC--CCCCcccHHHHHHHHHc-CCCC----CCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 030933 2 ENTAVLREWFDRVDS--EKTGSIAAAQLKHAFAV-GNLD----FSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (169)
Q Consensus 2 ~~~~~l~~~F~~~D~--~~~g~i~~~e~~~~l~~-~~~~----~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~ 70 (169)
++++.++.+|..+|. +++|.|+..++..+++. ++.. ++.+++..++..++.+++|.|+|++|+.++...
T Consensus 5 ~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 467889999999999 89999999999999975 4543 358999999999999999999999999987654
No 41
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.12 E-value=1.4e-09 Score=67.11 Aligned_cols=69 Identities=19% Similarity=0.328 Sum_probs=58.9
Q ss_pred HHHHHHHHhhhh-C-CCC-eeeHHHHHHHHHH-cCC----CCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHH
Q 030933 70 LLKVQHAFSDLE-R-GRG-YLVPDNVYEALVK-IGF----SLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQSA 138 (169)
Q Consensus 70 ~~~~~~~F~~~D-~-~~g-~i~~~el~~~l~~-~~~----~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l~~~~~~ 138 (169)
.+.++++|+.|| . ++| .|+..|++.+|+. +|. ..+.++++.+++.+|.+++|.|+|++|+.++..+...
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~~~ 84 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTVA 84 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHH
Confidence 467899999996 5 899 5999999999986 543 4588999999999999999999999999987765544
No 42
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.11 E-value=2.3e-09 Score=66.43 Aligned_cols=70 Identities=21% Similarity=0.345 Sum_probs=60.2
Q ss_pred HHHHHHHHHhhhhC--C-CCeeeHHHHHHHHHH-----cCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHH
Q 030933 69 FLLKVQHAFSDLER--G-RGYLVPDNVYEALVK-----IGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQSA 138 (169)
Q Consensus 69 ~~~~~~~~F~~~D~--~-~g~i~~~el~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l~~~~~~ 138 (169)
....+..+|..+|+ + +|.|+.+||+.++.. +|...+.++++.+++.+|.+++|.|+|++|+.++..+..+
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~~ 83 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSIA 83 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence 34578999999983 4 599999999999986 4667899999999999999999999999999988765443
No 43
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.11 E-value=4.9e-10 Score=64.79 Aligned_cols=60 Identities=22% Similarity=0.371 Sum_probs=54.6
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 030933 8 REWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF 69 (169)
Q Consensus 8 ~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~ 69 (169)
+.+|..+|++++|.|+..|+..++..++ .+..++..++..++.+++|.|+|++|+.++..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 5789999999999999999999999876 48889999999999999999999999987653
No 44
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.09 E-value=1e-09 Score=63.48 Aligned_cols=61 Identities=21% Similarity=0.400 Sum_probs=54.9
Q ss_pred HHHHhhhh-CCCCeeeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 030933 74 QHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQ 136 (169)
Q Consensus 74 ~~~F~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l~~~~ 136 (169)
+.+|..+| +++|.|+.+|+..++..+|. +.+++..+++.++.+++|.|++++|+.++..+.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHH
Confidence 56899999 69999999999999999874 788999999999999999999999999876544
No 45
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.07 E-value=9.9e-10 Score=60.88 Aligned_cols=52 Identities=27% Similarity=0.523 Sum_probs=48.7
Q ss_pred CCCcccHHHHHHHHHcCCCC-CCHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 030933 18 KTGSIAAAQLKHAFAVGNLD-FSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF 69 (169)
Q Consensus 18 ~~g~i~~~e~~~~l~~~~~~-~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~ 69 (169)
++|.|+.++|+.++..+|.. +++.++..++..+|.+++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 37999999999999988998 99999999999999999999999999998754
No 46
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.06 E-value=2.3e-09 Score=66.69 Aligned_cols=68 Identities=19% Similarity=0.270 Sum_probs=60.3
Q ss_pred HHHHHHHHhhhh-CCCCeeeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHH
Q 030933 70 LLKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQSAR 139 (169)
Q Consensus 70 ~~~~~~~F~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l~~~~~~~ 139 (169)
...+..+|..+| +++|.|+.++++.++...| ++.+++..++..++.+++|.|++++|+.++..+....
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~ 77 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKL 77 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHH
Confidence 457889999999 6999999999999999875 6789999999999999999999999999987665543
No 47
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.06 E-value=2.8e-09 Score=65.18 Aligned_cols=68 Identities=16% Similarity=0.237 Sum_probs=57.0
Q ss_pred HHHHHHHHHhhhh-C-CCC-eeeHHHHHHHHHHc-----CCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 030933 69 FLLKVQHAFSDLE-R-GRG-YLVPDNVYEALVKI-----GFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQ 136 (169)
Q Consensus 69 ~~~~~~~~F~~~D-~-~~g-~i~~~el~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l~~~~ 136 (169)
....+..+|+.|. + ++| +|+.+||+.++... +...++.+++.+++.+|.|+||.|+|+||+.++..+.
T Consensus 7 ~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 7 CIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 4467889999955 4 654 99999999999985 3356788999999999999999999999999877654
No 48
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.06 E-value=1.2e-09 Score=61.63 Aligned_cols=61 Identities=39% Similarity=0.548 Sum_probs=56.9
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 030933 7 LREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELN 67 (169)
Q Consensus 7 l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~ 67 (169)
+..+|..+|.+++|.|+..++..++..++...+.+.+..++..++.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999999999999999999999999999999999998754
No 49
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=99.05 E-value=4e-09 Score=89.52 Aligned_cols=124 Identities=18% Similarity=0.346 Sum_probs=100.3
Q ss_pred ccHHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCCC-------HHHHHHHHHHhcCCCCCcccHHHHHHHHHHH----
Q 030933 2 ENTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFS-------LSVVQQMIRMYDFDRNGTMSFEEFVELNKFL---- 70 (169)
Q Consensus 2 ~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~-------~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~---- 70 (169)
++.+++.-+|+.||++.+|.++..+|+.+|+++|.++| +++++.++...||+.+|.|+..+|+.++-..
T Consensus 2250 e~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeN 2329 (2399)
T KOG0040|consen 2250 EQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETEN 2329 (2399)
T ss_pred HHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhccccc
Confidence 35678888999999999999999999999999998663 3589999999999999999999999987432
Q ss_pred ----HHHHHHHhhhhCCCCeeeHHHHHHHHHHcCCCCCHHHHHHHHHh----cCCC----CCCcccHHHHHHHH
Q 030933 71 ----LKVQHAFSDLERGRGYLVPDNVYEALVKIGFSLDSPAFYTVCES----FDQN----KNGRLRLDDFISLC 132 (169)
Q Consensus 71 ----~~~~~~F~~~D~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~----~d~~----~~~~i~~~eF~~~l 132 (169)
..+..+|+.+|.+..+|+.+++++. +|++..+-.+.. +++. ..+.+.|.+|+.-+
T Consensus 2330 I~s~~eIE~AfraL~a~~~yvtke~~~~~-------ltreqaefc~s~m~~~~e~~~~~s~q~~l~y~dfv~sl 2396 (2399)
T KOG0040|consen 2330 ILSSEEIEDAFRALDAGKPYVTKEELYQN-------LTREQAEFCMSKMKPYAETSSGRSDQVALDYKDFVNSL 2396 (2399)
T ss_pred ccchHHHHHHHHHhhcCCccccHHHHHhc-------CCHHHHHHHHHHhhhhcccccCCCccccccHHHHHHHH
Confidence 5899999999998999999998754 456655554444 3332 23468888888764
No 50
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=99.03 E-value=3e-09 Score=80.46 Aligned_cols=130 Identities=18% Similarity=0.217 Sum_probs=104.8
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCCCH---HHHHHHHHHhcCCCCCcccHHHHHHHH---HHHHHHHHHHh
Q 030933 5 AVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSL---SVVQQMIRMYDFDRNGTMSFEEFVELN---KFLLKVQHAFS 78 (169)
Q Consensus 5 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~---~~~~~l~~~~d~~~~~~i~~~eF~~~~---~~~~~~~~~F~ 78 (169)
+-+.--|..+|+..+|.|+..+|..++-......+. ..++++-+.++.. +..|+++||..+. ..+..+..|..
T Consensus 318 Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl~~l~dfd~Al~ 396 (489)
T KOG2643|consen 318 EILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRFLNNLNDFDIALR 396 (489)
T ss_pred HHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHHHhhhhHHHHHHH
Confidence 445567999999988999999999988865432222 3456677777655 4569988888764 56677888888
Q ss_pred hhhCCCCeeeHHHHHHHHHHc-CCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 030933 79 DLERGRGYLVPDNVYEALVKI-GFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFL 135 (169)
Q Consensus 79 ~~D~~~g~i~~~el~~~l~~~-~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l~~~ 135 (169)
.|-.-++.|+..+|+++-+.. |.++++..++.+|..+|.|+||.++++||+..+.+.
T Consensus 397 fy~~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~R 454 (489)
T KOG2643|consen 397 FYHMAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKRR 454 (489)
T ss_pred HHHHcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHHH
Confidence 888667899999999999885 899999999999999999999999999999998643
No 51
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.02 E-value=1.1e-08 Score=67.19 Aligned_cols=88 Identities=16% Similarity=0.339 Sum_probs=75.7
Q ss_pred HHHHHH-HHHHHHHHHHhhhh-CCCCeeeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH----
Q 030933 62 EFVELN-KFLLKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFL---- 135 (169)
Q Consensus 62 eF~~~~-~~~~~~~~~F~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l~~~---- 135 (169)
.|..+- ...++++++|...| +.+|.|.+++|+.++.++|-..++++++.+++... |.|+|.-|+.++-..
T Consensus 22 vFamf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea~----gPINft~FLTmfGekL~gt 97 (171)
T KOG0031|consen 22 VFAMFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEAP----GPINFTVFLTMFGEKLNGT 97 (171)
T ss_pred HHHHhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhCC----CCeeHHHHHHHHHHHhcCC
Confidence 354443 34578999999999 68999999999999999999999999999999875 789999999887533
Q ss_pred ---HHHHHHHhhhCCCCceeE
Q 030933 136 ---QSARNLFNSFDTAKQGRI 153 (169)
Q Consensus 136 ---~~~~~~f~~~d~~~~g~i 153 (169)
..+...|+.+|.+++|.|
T Consensus 98 dpe~~I~~AF~~FD~~~~G~I 118 (171)
T KOG0031|consen 98 DPEEVILNAFKTFDDEGSGKI 118 (171)
T ss_pred CHHHHHHHHHHhcCccCCCcc
Confidence 458899999999999999
No 52
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.99 E-value=6.9e-09 Score=63.43 Aligned_cols=68 Identities=19% Similarity=0.272 Sum_probs=58.3
Q ss_pred HHHHHHHHHhhhhC---CCCeeeHHHHHHHHHH-cCCC----CCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 030933 69 FLLKVQHAFSDLER---GRGYLVPDNVYEALVK-IGFS----LDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQ 136 (169)
Q Consensus 69 ~~~~~~~~F~~~D~---~~g~i~~~el~~~l~~-~~~~----~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l~~~~ 136 (169)
..+.++.+|..+|. ++|.|+.+++..++.. +|.+ .+.+++..++..++.+++|.|+|++|+.++....
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLA 81 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHH
Confidence 34568899999995 7999999999999986 5543 4589999999999999999999999999887653
No 53
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.98 E-value=4e-09 Score=59.46 Aligned_cols=60 Identities=22% Similarity=0.488 Sum_probs=55.6
Q ss_pred HHHHHhhhh-CCCCeeeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 030933 73 VQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLC 132 (169)
Q Consensus 73 ~~~~F~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l 132 (169)
+..+|..+| +++|.|+.+++..++..++.+.+.+.+..++..++.+++|.|++++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 567899999 689999999999999999999999999999999999999999999998764
No 54
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.97 E-value=6.6e-09 Score=63.49 Aligned_cols=67 Identities=16% Similarity=0.328 Sum_probs=57.3
Q ss_pred HHHHHHHHHh-hCCCCCC-cccHHHHHHHHHcC-----CCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 030933 4 TAVLREWFDR-VDSEKTG-SIAAAQLKHAFAVG-----NLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (169)
Q Consensus 4 ~~~l~~~F~~-~D~~~~g-~i~~~e~~~~l~~~-----~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~ 70 (169)
+..+..+|+. +|.+++| .|+..||+.++... +...++.++..+++.+|.+++|.|+|+||+.++..+
T Consensus 8 i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 8 IESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 5678889999 6787865 99999999999874 335667899999999999999999999999987654
No 55
>PLN02964 phosphatidylserine decarboxylase
Probab=98.95 E-value=1e-08 Score=82.60 Aligned_cols=88 Identities=15% Similarity=0.205 Sum_probs=42.5
Q ss_pred HHHHHHHhhhh-CCCCeeeHHHHHHHHHHcC-CCCCHHH---HHHHHHhcCCCCCCcccHHHHHHHHHHHH------HHH
Q 030933 71 LKVQHAFSDLE-RGRGYLVPDNVYEALVKIG-FSLDSPA---FYTVCESFDQNKNGRLRLDDFISLCIFLQ------SAR 139 (169)
Q Consensus 71 ~~~~~~F~~~D-~~~g~i~~~el~~~l~~~~-~~~~~~~---~~~~~~~~d~~~~~~i~~~eF~~~l~~~~------~~~ 139 (169)
+++.++|..+| +++|.+ +..+++.+| ...+.++ ++.+++.+|.+++|.|+++||..++..+. .+.
T Consensus 143 ~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~ 218 (644)
T PLN02964 143 ESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKE 218 (644)
T ss_pred HHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHH
Confidence 34455555555 345543 444455555 2334433 44555555555555555555555544321 244
Q ss_pred HHHhhhCCCCceeEEeehhHHHHHh
Q 030933 140 NLFNSFDTAKQGRITLDLNQFIFCT 164 (169)
Q Consensus 140 ~~f~~~d~~~~g~i~~~~~~~~~~~ 164 (169)
.+|..+|++++|.| +.+|+...+
T Consensus 219 eaFk~fDkDgdG~I--s~dEL~~vL 241 (644)
T PLN02964 219 ELFKAADLNGDGVV--TIDELAALL 241 (644)
T ss_pred HHHHHhCCCCCCcC--CHHHHHHHH
Confidence 45555555555544 455554443
No 56
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.94 E-value=6.1e-09 Score=63.63 Aligned_cols=66 Identities=20% Similarity=0.353 Sum_probs=56.9
Q ss_pred HHHHHHHHhhhh-C--CCCeeeHHHHHHHHH-HcCCCCC----HHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 030933 70 LLKVQHAFSDLE-R--GRGYLVPDNVYEALV-KIGFSLD----SPAFYTVCESFDQNKNGRLRLDDFISLCIFL 135 (169)
Q Consensus 70 ~~~~~~~F~~~D-~--~~g~i~~~el~~~l~-~~~~~~~----~~~~~~~~~~~d~~~~~~i~~~eF~~~l~~~ 135 (169)
...+...|..|+ + .+|.|+.+||+.++. .+|..++ +++++.+++.+|.+++|.|+|++|+.++..+
T Consensus 7 i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 7 IETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 356788999999 5 379999999999997 4566566 8999999999999999999999999987654
No 57
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.89 E-value=8.1e-08 Score=74.01 Aligned_cols=164 Identities=18% Similarity=0.256 Sum_probs=117.5
Q ss_pred cHHHHHHHHHhh---CCCCCCcccHHHHHHHHHcC-CCC-CCHHHHHHHHHHhcCCCCCcccHHHHHHHHH----HHHHH
Q 030933 3 NTAVLREWFDRV---DSEKTGSIAAAQLKHAFAVG-NLD-FSLSVVQQMIRMYDFDRNGTMSFEEFVELNK----FLLKV 73 (169)
Q Consensus 3 ~~~~l~~~F~~~---D~~~~g~i~~~e~~~~l~~~-~~~-~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~----~~~~~ 73 (169)
+.++++.+|..+ +.++...++.++|....-.+ +.. ..++.++.+-...|..+||-|+|+||..+-. +....
T Consensus 31 ~~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~pDal~ 110 (694)
T KOG0751|consen 31 DPKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLCAPDALF 110 (694)
T ss_pred ChHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhccCchHHH
Confidence 456666666554 56778889999988765433 333 3444444455566778899999999998643 34567
Q ss_pred HHHHhhhh-CCCCeeeHHHHHHHHHHcCCC----CCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH--HHHHHHHhhhC
Q 030933 74 QHAFSDLE-RGRGYLVPDNVYEALVKIGFS----LDSPAFYTVCESFDQNKNGRLRLDDFISLCIFL--QSARNLFNSFD 146 (169)
Q Consensus 74 ~~~F~~~D-~~~g~i~~~el~~~l~~~~~~----~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l~~~--~~~~~~f~~~d 146 (169)
+.+|+.+| .++|.+|.+++..++.....+ ++.+ .+.+-..+..+....++|.+|.+++-.. ++..+.|...|
T Consensus 111 ~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d-~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~~E~~~qafr~~d 189 (694)
T KOG0751|consen 111 EVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWD-SEFIKLHFGDIRKRHLNYAEFTQFLHEFQLEHAEQAFREKD 189 (694)
T ss_pred HHHHHHhcccCCCceehHHHHHHHhccccccCCCccCC-cchHHHHhhhHHHHhccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88999999 599999999999999986432 2111 1222334555666789999999998644 55678899999
Q ss_pred CCCceeEE-eehhHHHHHhhhc
Q 030933 147 TAKQGRIT-LDLNQFIFCTANC 167 (169)
Q Consensus 147 ~~~~g~i~-~~~~~~~~~~~~~ 167 (169)
+.+.|.|+ +++++-+..+..|
T Consensus 190 ~~~ng~is~Ldfq~imvt~~~h 211 (694)
T KOG0751|consen 190 KAKNGFISVLDFQDIMVTIRIH 211 (694)
T ss_pred ccCCCeeeeechHhhhhhhhhh
Confidence 99999994 8888877666554
No 58
>PF14658 EF-hand_9: EF-hand domain
Probab=98.88 E-value=1.1e-08 Score=57.99 Aligned_cols=60 Identities=23% Similarity=0.348 Sum_probs=56.3
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHcCCC-CCCHHHHHHHHHHhcCCCC-CcccHHHHHHHHHH
Q 030933 10 WFDRVDSEKTGSIAAAQLKHAFAVGNL-DFSLSVVQQMIRMYDFDRN-GTMSFEEFVELNKF 69 (169)
Q Consensus 10 ~F~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~l~~~~d~~~~-~~i~~~eF~~~~~~ 69 (169)
+|..+|.++.|.|...++..+|++.+. .+++.+++.+...+|+++. |.|+++.|+..++.
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 689999999999999999999999988 8999999999999999987 99999999998763
No 59
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.87 E-value=5e-08 Score=63.05 Aligned_cols=95 Identities=14% Similarity=0.148 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHH------HHHHHHHhhhh-C--CCCeeeHHHHHHHHHHcC---CCCCHHHH
Q 030933 41 SVVQQMIRMYDFDRNGTMSFEEFVELNKFL------LKVQHAFSDLE-R--GRGYLVPDNVYEALVKIG---FSLDSPAF 108 (169)
Q Consensus 41 ~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~------~~~~~~F~~~D-~--~~g~i~~~el~~~l~~~~---~~~~~~~~ 108 (169)
.+++.+|..||..+++.|++.+--..++.+ ..+.++...++ + +.-.|+.++|.-++..++ ...+-+++
T Consensus 11 ~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~edf 90 (152)
T KOG0030|consen 11 EEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTYEDF 90 (152)
T ss_pred HHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcHHHH
Confidence 444555555555555555555554444322 33444444444 2 224455555444444432 22344444
Q ss_pred HHHHHhcCCCCCCcccHHHHHHHHHHH
Q 030933 109 YTVCESFDQNKNGRLRLDDFISLCIFL 135 (169)
Q Consensus 109 ~~~~~~~d~~~~~~i~~~eF~~~l~~~ 135 (169)
-+-++.+|+.+.|.|.+.|+...|..+
T Consensus 91 vegLrvFDkeg~G~i~~aeLRhvLttl 117 (152)
T KOG0030|consen 91 VEGLRVFDKEGNGTIMGAELRHVLTTL 117 (152)
T ss_pred HHHHHhhcccCCcceeHHHHHHHHHHH
Confidence 444555555555555555555555444
No 60
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.85 E-value=1.6e-08 Score=64.63 Aligned_cols=61 Identities=21% Similarity=0.261 Sum_probs=52.8
Q ss_pred HHHHHHHHHhhhh-CCCCeeeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 030933 69 FLLKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCI 133 (169)
Q Consensus 69 ~~~~~~~~F~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l~ 133 (169)
....+..+|..+| +++|.|+.+|+..+. .......+..++..+|.|+||.||++||..++.
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 4467899999999 799999999999876 233467788999999999999999999999983
No 61
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.83 E-value=2.2e-07 Score=70.14 Aligned_cols=119 Identities=15% Similarity=0.231 Sum_probs=96.2
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHH-------HHHHHHHhhhh-CCCCeeeHHHHHHHHHHcCCCCCHHHHHHH
Q 030933 40 LSVVQQMIRMYDFDRNGTMSFEEFVELNKFL-------LKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTV 111 (169)
Q Consensus 40 ~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~-------~~~~~~F~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~ 111 (169)
+..++.+|+.+|.+++|.|+..+....+..+ +....+|+..| +.+|.++.+||++.+..- +..+..+
T Consensus 13 ~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~-----E~~l~~~ 87 (463)
T KOG0036|consen 13 DIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNK-----ELELYRI 87 (463)
T ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHh-----HHHHHHH
Confidence 3557889999999999999999988766543 45777888899 789999999999988753 5667888
Q ss_pred HHhcCCCCCCcccHHHHHHHHHHH------HHHHHHHhhhCCCCceeEEeehhHHHHHhh
Q 030933 112 CESFDQNKNGRLRLDDFISLCIFL------QSARNLFNSFDTAKQGRITLDLNQFIFCTA 165 (169)
Q Consensus 112 ~~~~d~~~~~~i~~~eF~~~l~~~------~~~~~~f~~~d~~~~g~i~~~~~~~~~~~~ 165 (169)
|...|.+.||.|.-+|....+..+ +...++|...|+++.+.| ++++|.....
T Consensus 88 F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I--~~~e~rd~~l 145 (463)
T KOG0036|consen 88 FQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATI--DLEEWRDHLL 145 (463)
T ss_pred HhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeee--ccHHHHhhhh
Confidence 999999999999999888887643 456778888999998887 8888876544
No 62
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.82 E-value=3.2e-08 Score=63.28 Aligned_cols=60 Identities=18% Similarity=0.341 Sum_probs=42.9
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 030933 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELN 67 (169)
Q Consensus 4 ~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~ 67 (169)
..++.-+|..+|.|++|.|+.+|+..+. .......+..++..+|.+++|.|+++||...+
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 3456667777888888888888877665 23445666777777777777777777777765
No 63
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.82 E-value=2.9e-08 Score=60.64 Aligned_cols=66 Identities=15% Similarity=0.228 Sum_probs=56.5
Q ss_pred HHHHHHHHHhhCCC--CCCcccHHHHHHHHH-cCCCCCC----HHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 030933 4 TAVLREWFDRVDSE--KTGSIAAAQLKHAFA-VGNLDFS----LSVVQQMIRMYDFDRNGTMSFEEFVELNKF 69 (169)
Q Consensus 4 ~~~l~~~F~~~D~~--~~g~i~~~e~~~~l~-~~~~~~~----~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~ 69 (169)
+..+...|+.++.. ++|.|+..||+.++. .++..++ ..++..++..+|.+++|.|+|++|+.++..
T Consensus 7 i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 7 IETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 45678899999965 479999999999997 4555565 899999999999999999999999998764
No 64
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.74 E-value=9.9e-08 Score=65.40 Aligned_cols=100 Identities=16% Similarity=0.348 Sum_probs=78.5
Q ss_pred HHHHHHHHH-HHHHHHHHHhhhh-CCCCeeeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHH
Q 030933 60 FEEFVELNK-FLLKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQS 137 (169)
Q Consensus 60 ~~eF~~~~~-~~~~~~~~F~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l~~~~~ 137 (169)
|.+|..+.+ ..+....+|+.|| +.+|+|+.-||+.++.++|.+-|.--+..+++..|.|.||+||+.+|+-++.....
T Consensus 87 yteF~eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaa 166 (244)
T KOG0041|consen 87 YTEFSEFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAA 166 (244)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhc
Confidence 777776654 3578899999999 79999999999999999999988888999999999999999999999988764322
Q ss_pred --------HHHH--HhhhCCCCceeEEeehhHHH
Q 030933 138 --------ARNL--FNSFDTAKQGRITLDLNQFI 161 (169)
Q Consensus 138 --------~~~~--f~~~d~~~~g~i~~~~~~~~ 161 (169)
+..+ .+.+|....|+. .-.+|-
T Consensus 167 gEL~~ds~~~~LAr~~eVDVskeGV~--GAknFF 198 (244)
T KOG0041|consen 167 GELQEDSGLLRLARLSEVDVSKEGVS--GAKNFF 198 (244)
T ss_pred cccccchHHHHHHHhcccchhhhhhh--hHHHHH
Confidence 1111 233666677755 444443
No 65
>PF14658 EF-hand_9: EF-hand domain
Probab=98.73 E-value=1e-07 Score=54.10 Aligned_cols=60 Identities=15% Similarity=0.280 Sum_probs=55.0
Q ss_pred HHHhhhh-CCCCeeeHHHHHHHHHHcCC-CCCHHHHHHHHHhcCCCCC-CcccHHHHHHHHHH
Q 030933 75 HAFSDLE-RGRGYLVPDNVYEALVKIGF-SLDSPAFYTVCESFDQNKN-GRLRLDDFISLCIF 134 (169)
Q Consensus 75 ~~F~~~D-~~~g~i~~~el~~~l~~~~~-~~~~~~~~~~~~~~d~~~~-~~i~~~eF~~~l~~ 134 (169)
.+|..+| ++.|.|...++..+|+.++. ..++.+++.+.+.+|+++. |.|+++.|...|..
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 3689999 79999999999999999987 7889999999999999987 99999999998753
No 66
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.69 E-value=5.6e-08 Score=68.75 Aligned_cols=156 Identities=15% Similarity=0.189 Sum_probs=106.8
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHcCC---CCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH----------
Q 030933 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVGN---LDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL---------- 70 (169)
Q Consensus 4 ~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~---~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~---------- 70 (169)
.+.|..+|...|.+.+|.|+..|++..+..-. +.-+.++.+..|+..|++++|.|+|+||..-+...
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghsekevad 179 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEVAD 179 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHHHH
Confidence 46788899999999999999999999887421 12223556678889999999999999998744210
Q ss_pred ------------------HHHHHHHhhhh-C-CCCeeeHHHHHHHHHHc-CCCCCHHHHHHHHHhcCCCCCCcccHHHHH
Q 030933 71 ------------------LKVQHAFSDLE-R-GRGYLVPDNVYEALVKI-GFSLDSPAFYTVCESFDQNKNGRLRLDDFI 129 (169)
Q Consensus 71 ------------------~~~~~~F~~~D-~-~~g~i~~~el~~~l~~~-~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~ 129 (169)
+.+..-+-..| + .+-.++.+||..+|..- ....-...+..+...+|.|+|..+|..+|+
T Consensus 180 airlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFi 259 (362)
T KOG4251|consen 180 AIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFI 259 (362)
T ss_pred HhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhh
Confidence 11222223334 2 34456668888777642 122334567788889999999999999999
Q ss_pred HHHHH---------------HHHHHHHHhhhCCCCceeEEeehhHHH
Q 030933 130 SLCIF---------------LQSARNLFNSFDTAKQGRITLDLNQFI 161 (169)
Q Consensus 130 ~~l~~---------------~~~~~~~f~~~d~~~~g~i~~~~~~~~ 161 (169)
....- -...++.=..+|+|++|.+ |.++..
T Consensus 260 slpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGiv--TaeELe 304 (362)
T KOG4251|consen 260 SLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIV--TAEELE 304 (362)
T ss_pred cCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccce--eHHHHH
Confidence 86421 0123344455799999988 666543
No 67
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.69 E-value=4.3e-07 Score=55.20 Aligned_cols=70 Identities=21% Similarity=0.295 Sum_probs=57.8
Q ss_pred HHHHHHHHhhhhCCCCeeeHHHHHHHHHHc-----CCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHH
Q 030933 70 LLKVQHAFSDLERGRGYLVPDNVYEALVKI-----GFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQSAR 139 (169)
Q Consensus 70 ~~~~~~~F~~~D~~~g~i~~~el~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l~~~~~~~ 139 (169)
...+..+|..|..+.+.++..||+.++..- +-..++..++.+++..|.|+||.|+|+||+.++..+....
T Consensus 7 i~~lI~~FhkYaG~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~~ac 81 (91)
T cd05024 7 MEKMMLTFHKFAGEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLLIAC 81 (91)
T ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHH
Confidence 346778899998556799999999999762 3345788999999999999999999999999987765543
No 68
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.67 E-value=3.6e-07 Score=69.91 Aligned_cols=122 Identities=17% Similarity=0.285 Sum_probs=95.7
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHH----hcCCCCCcccHHHHHHHHHHH------HHHHHH
Q 030933 7 LREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRM----YDFDRNGTMSFEEFVELNKFL------LKVQHA 76 (169)
Q Consensus 7 l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~----~d~~~~~~i~~~eF~~~~~~~------~~~~~~ 76 (169)
+...|-.+|.|++|.|+.+++...- ...++..-+.++|.+ .-...+|+++|++|+-++-.+ ..++..
T Consensus 280 iy~kFweLD~Dhd~lidk~~L~ry~---d~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYw 356 (493)
T KOG2562|consen 280 IYCKFWELDTDHDGLIDKEDLKRYG---DHTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYW 356 (493)
T ss_pred HHHHHhhhccccccccCHHHHHHHh---ccchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhh
Confidence 3445788999999999999998664 335678888999983 334568999999999987654 468999
Q ss_pred Hhhhh-CCCCeeeHHHHHHHHHHc-------C-CCCC-HHHHHHHHHhcCCCCCCcccHHHHHHH
Q 030933 77 FSDLE-RGRGYLVPDNVYEALVKI-------G-FSLD-SPAFYTVCESFDQNKNGRLRLDDFISL 131 (169)
Q Consensus 77 F~~~D-~~~g~i~~~el~~~l~~~-------~-~~~~-~~~~~~~~~~~d~~~~~~i~~~eF~~~ 131 (169)
|+.+| +++|.|+..|++-+.... | .+++ ++.+.+++....+...++||.++|...
T Consensus 357 FrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~s 421 (493)
T KOG2562|consen 357 FRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKGS 421 (493)
T ss_pred eeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhhc
Confidence 99999 999999999988777652 2 2233 455677888888788899999999873
No 69
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.54 E-value=1.6e-07 Score=44.89 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=22.3
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHc
Q 030933 6 VLREWFDRVDSEKTGSIAAAQLKHAFAV 33 (169)
Q Consensus 6 ~l~~~F~~~D~~~~g~i~~~e~~~~l~~ 33 (169)
+++.+|+.+|+|++|+|+..||..+++.
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 4677888888888888888888887764
No 70
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.51 E-value=2.3e-06 Score=69.23 Aligned_cols=131 Identities=21% Similarity=0.329 Sum_probs=113.6
Q ss_pred cHHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH---HHHHHHHhh
Q 030933 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL---LKVQHAFSD 79 (169)
Q Consensus 3 ~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~---~~~~~~F~~ 79 (169)
....+..+|..+|.+.+|.++..+...++..++..+....+..+++..+..+++.+...+|..+...+ .++...|..
T Consensus 134 ~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rpev~~~f~~ 213 (746)
T KOG0169|consen 134 REHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRPEVYFLFVQ 213 (746)
T ss_pred HHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCchHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999986543 378888888
Q ss_pred hhCCCCeeeHHHHHHHHHHcC--CCCCHHHHHHHHHhcCCC----CCCcccHHHHHHHHH
Q 030933 80 LERGRGYLVPDNVYEALVKIG--FSLDSPAFYTVCESFDQN----KNGRLRLDDFISLCI 133 (169)
Q Consensus 80 ~D~~~g~i~~~el~~~l~~~~--~~~~~~~~~~~~~~~d~~----~~~~i~~~eF~~~l~ 133 (169)
+-.+.++++.+++..+|...+ .+.+.+..+.+++.+... ..+.++.+.|..+|.
T Consensus 214 ~s~~~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~ 273 (746)
T KOG0169|consen 214 YSHGKEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLF 273 (746)
T ss_pred HhCCCCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhc
Confidence 886699999999999999874 347888899999887654 345699999999985
No 71
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.51 E-value=1.7e-06 Score=52.55 Aligned_cols=66 Identities=17% Similarity=0.200 Sum_probs=55.0
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHc-----CCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 030933 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAV-----GNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (169)
Q Consensus 4 ~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~-----~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~ 70 (169)
+..|..+|..|..+ .+.++..||+.++.. +.....+..+..+++.+|.+++|.|+|.||+.++..+
T Consensus 7 i~~lI~~FhkYaG~-~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 7 MEKMMLTFHKFAGE-KNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHHcCC-CCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 45677889999854 579999999999974 2334567889999999999999999999999988765
No 72
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.47 E-value=8.4e-07 Score=60.93 Aligned_cols=67 Identities=22% Similarity=0.288 Sum_probs=61.0
Q ss_pred cHHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 030933 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF 69 (169)
Q Consensus 3 ~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~ 69 (169)
+++.+..+|+.+|.+.+|+|+..|++.+|..+|-+-+---++.+++..|.+.+|+|+|-+|+-++..
T Consensus 97 qIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrk 163 (244)
T KOG0041|consen 97 QIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRK 163 (244)
T ss_pred HHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 5677888999999999999999999999999998777777899999999999999999999988764
No 73
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.41 E-value=1.8e-06 Score=46.28 Aligned_cols=50 Identities=22% Similarity=0.331 Sum_probs=41.4
Q ss_pred cccHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 030933 21 SIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (169)
Q Consensus 21 ~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~ 70 (169)
++++.|++.+|+.++..+.+..+..+|..+|.+++|++.-+||..+++.+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 47899999999999999999999999999999999999999999987653
No 74
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.41 E-value=1.8e-05 Score=61.52 Aligned_cols=154 Identities=16% Similarity=0.299 Sum_probs=95.2
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHcCCC------CCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHH--HHHHHHHHh
Q 030933 7 LREWFDRVDSEKTGSIAAAQLKHAFAVGNL------DFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF--LLKVQHAFS 78 (169)
Q Consensus 7 l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~------~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~--~~~~~~~F~ 78 (169)
...+|..+|+.++|.++.+++..++.+... .+..+-++.. +.......++|.+|..++.. .+.-+++|+
T Consensus 110 ~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~---Fg~~~~r~~ny~~f~Q~lh~~~~E~~~qafr 186 (694)
T KOG0751|consen 110 FEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLH---FGDIRKRHLNYAEFTQFLHEFQLEHAEQAFR 186 (694)
T ss_pred HHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHH---hhhHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666664322 2222333332 22233344666666666553 367899999
Q ss_pred hhh-CCCCeeeHHHHHHHHHHcCCCCCHHHHHH-HHHhcCCCCCCcccHHHHHHH---HHHHHHHHHHHhhhC-CCCcee
Q 030933 79 DLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYT-VCESFDQNKNGRLRLDDFISL---CIFLQSARNLFNSFD-TAKQGR 152 (169)
Q Consensus 79 ~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~-~~~~~d~~~~~~i~~~eF~~~---l~~~~~~~~~f~~~d-~~~~g~ 152 (169)
..| .++|.||.=+++.++.....++...-++. +......+....+|+..|..+ |..++.+++++..+. ..++
T Consensus 187 ~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~~~H~vSf~yf~afnslL~~melirk~y~s~~~~~~d-- 264 (694)
T KOG0751|consen 187 EKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGNDSHQVSFSYFNAFNSLLNNMELIRKIYSSLAGTRKD-- 264 (694)
T ss_pred HhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcCCCCccccchHHHHHHHHHHhhHHHHHHHHHHhcccccc--
Confidence 999 59999999999999998876655444544 444454555566877766654 445555666666553 2333
Q ss_pred EEeehhHHHHHhh
Q 030933 153 ITLDLNQFIFCTA 165 (169)
Q Consensus 153 i~~~~~~~~~~~~ 165 (169)
+.++++++...+.
T Consensus 265 ~~~~kdq~~~~a~ 277 (694)
T KOG0751|consen 265 VEVTKDQFSLAAQ 277 (694)
T ss_pred hhhhHHHHHHHHH
Confidence 3448888876653
No 75
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.39 E-value=8e-06 Score=62.57 Aligned_cols=93 Identities=25% Similarity=0.435 Sum_probs=74.1
Q ss_pred HHHHHHHhhhh-CCCCeeeHHHHHHHHHHc-CCCCC--------------------------------------------
Q 030933 71 LKVQHAFSDLE-RGRGYLVPDNVYEALVKI-GFSLD-------------------------------------------- 104 (169)
Q Consensus 71 ~~~~~~F~~~D-~~~g~i~~~el~~~l~~~-~~~~~-------------------------------------------- 104 (169)
.++...|+.+| +..|.|+..++...+..+ |.+++
T Consensus 464 sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLY 543 (631)
T KOG0377|consen 464 SDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETLY 543 (631)
T ss_pred hHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHHH
Confidence 57888999999 689999999988888764 33331
Q ss_pred --HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH----------HHHHHHhhhCCCCceeEEeehhHHHHHhh
Q 030933 105 --SPAFYTVCESFDQNKNGRLRLDDFISLCIFLQ----------SARNLFNSFDTAKQGRITLDLNQFIFCTA 165 (169)
Q Consensus 105 --~~~~~~~~~~~d~~~~~~i~~~eF~~~l~~~~----------~~~~~f~~~d~~~~g~i~~~~~~~~~~~~ 165 (169)
...++.+|+..|.|..|.||.+||......+. .+.++...+|-|++|.| ++.||+++..
T Consensus 544 r~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~I--DlNEfLeAFr 614 (631)
T KOG0377|consen 544 RNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKI--DLNEFLEAFR 614 (631)
T ss_pred hchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcc--cHHHHHHHHh
Confidence 22467789999999999999999999876553 35677888999999999 9999998754
No 76
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.39 E-value=6.9e-06 Score=63.11 Aligned_cols=147 Identities=16% Similarity=0.230 Sum_probs=102.6
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCCC---------------HHHHHHHHHHhcCCCCCcccHHHHHHHH--
Q 030933 5 AVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFS---------------LSVVQQMIRMYDFDRNGTMSFEEFVELN-- 67 (169)
Q Consensus 5 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~---------------~~~~~~l~~~~d~~~~~~i~~~eF~~~~-- 67 (169)
..+.+.++.++..+-|++...+|+..|+.+-.+.+ .-.+.++|=.++..+.|+|+..+...-.
T Consensus 174 t~~~~~v~~l~~~~~~yl~q~df~~~Lqeli~Thpl~~l~~~pEf~~~Y~~tvi~rIFy~~nrs~tG~iti~el~~snll 253 (493)
T KOG2562|consen 174 TRLEQFVNLLIQAGCSYLRQDDFKPYLQELIATHPLEFLDEEPEFQERYAETVIQRIFYYLNRSRTGRITIQELLRSNLL 253 (493)
T ss_pred HHHHHHHHHHhccCccceeccccHHHHHHHHhcCCchhhccChhHHHHHHHHHhhhhheeeCCccCCceeHHHHHHhHHH
Confidence 34556777778777888888888877775311111 1224566666788888999888877621
Q ss_pred ---HHH---------------HHHHHH---Hhhhh-CCCCeeeHHHHHHHHHHcCCCCCHHHHHHHHHh----cCCCCCC
Q 030933 68 ---KFL---------------LKVQHA---FSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCES----FDQNKNG 121 (169)
Q Consensus 68 ---~~~---------------~~~~~~---F~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~----~d~~~~~ 121 (169)
..+ +....+ |..+| +++|.|+++++...-... ++..-++.+|.. .....+|
T Consensus 254 ~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d~t---lt~~ivdRIFs~v~r~~~~~~eG 330 (493)
T KOG2562|consen 254 DALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGDHT---LTERIVDRIFSQVPRGFTVKVEG 330 (493)
T ss_pred HHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhccc---hhhHHHHHHHhhccccceeeecC
Confidence 111 234444 77889 799999999998665433 456677888883 3335789
Q ss_pred cccHHHHHHHHHHHH------HHHHHHhhhCCCCceeEE
Q 030933 122 RLRLDDFISLCIFLQ------SARNLFNSFDTAKQGRIT 154 (169)
Q Consensus 122 ~i~~~eF~~~l~~~~------~~~~~f~~~d~~~~g~i~ 154 (169)
+|+|++|+-++.-+. .+.=.|.-+|.+++|.++
T Consensus 331 rmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt 369 (493)
T KOG2562|consen 331 RMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILT 369 (493)
T ss_pred cccHHHHHHHHHHhccCCCccchhhheeeeeccCCCccc
Confidence 999999999987664 355578889999999994
No 77
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.36 E-value=3.9e-06 Score=52.67 Aligned_cols=65 Identities=25% Similarity=0.456 Sum_probs=56.7
Q ss_pred ccHHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 030933 2 ENTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF 69 (169)
Q Consensus 2 ~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~ 69 (169)
++...+..+|..+|+ ++|.|+..+.+.++...+ ++...+..+|...|.+++|.++++||+-.+.-
T Consensus 7 ~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 7 EEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp CHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 567889999999986 579999999999998654 78899999999999999999999999987654
No 78
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.35 E-value=8e-07 Score=43.19 Aligned_cols=30 Identities=27% Similarity=0.306 Sum_probs=25.7
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHH-cCC
Q 030933 6 VLREWFDRVDSEKTGSIAAAQLKHAFA-VGN 35 (169)
Q Consensus 6 ~l~~~F~~~D~~~~g~i~~~e~~~~l~-~~~ 35 (169)
+++.+|+.+|.+++|.|+..||..+++ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 478899999999999999999999998 554
No 79
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.32 E-value=1.5e-06 Score=41.49 Aligned_cols=24 Identities=21% Similarity=0.427 Sum_probs=11.1
Q ss_pred HHHHhhhh-CCCCeeeHHHHHHHHH
Q 030933 74 QHAFSDLE-RGRGYLVPDNVYEALV 97 (169)
Q Consensus 74 ~~~F~~~D-~~~g~i~~~el~~~l~ 97 (169)
..+|+.+| +++|+|+.+||..+++
T Consensus 3 ~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 3 KEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 34444444 3444444444444443
No 80
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.25 E-value=1.8e-05 Score=49.61 Aligned_cols=65 Identities=20% Similarity=0.360 Sum_probs=55.6
Q ss_pred HHHHHHHhhhhCCCCeeeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHH
Q 030933 71 LKVQHAFSDLERGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQS 137 (169)
Q Consensus 71 ~~~~~~F~~~D~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l~~~~~ 137 (169)
+....+|...+.++|.|+.++.+.+|...| ++.+.+..|+..+|.+.+|.++.+||+-.+-.+..
T Consensus 10 ~~y~~~F~~l~~~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~~ 74 (104)
T PF12763_consen 10 QKYDQIFQSLDPQDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLINR 74 (104)
T ss_dssp HHHHHHHHCTSSSTTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHHH
Confidence 456788988887789999999999999876 56899999999999999999999999998765543
No 81
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.25 E-value=2.7e-06 Score=41.31 Aligned_cols=29 Identities=21% Similarity=0.526 Sum_probs=23.4
Q ss_pred HHHHHHhhhh-CCCCeeeHHHHHHHHH-HcC
Q 030933 72 KVQHAFSDLE-RGRGYLVPDNVYEALV-KIG 100 (169)
Q Consensus 72 ~~~~~F~~~D-~~~g~i~~~el~~~l~-~~~ 100 (169)
++..+|+.+| +++|+|+.+||.++|+ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 3678899999 6899999999999998 565
No 82
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.24 E-value=8.5e-06 Score=43.75 Aligned_cols=50 Identities=18% Similarity=0.254 Sum_probs=41.1
Q ss_pred eeeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 030933 86 YLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFL 135 (169)
Q Consensus 86 ~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l~~~ 135 (169)
.++..|++++|+.+.+.++++-...+|+.+|.+++|.+.-+||..+...+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 37889999999999999999999999999999999999999999987654
No 83
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.04 E-value=5.6e-06 Score=61.01 Aligned_cols=102 Identities=13% Similarity=0.100 Sum_probs=83.8
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHH-------HHHHHHHHHhhhh-CCCCeeeHHHHHHHHHHc-CCCCCHHHHHHH
Q 030933 41 SVVQQMIRMYDFDRNGTMSFEEFVELNK-------FLLKVQHAFSDLE-RGRGYLVPDNVYEALVKI-GFSLDSPAFYTV 111 (169)
Q Consensus 41 ~~~~~l~~~~d~~~~~~i~~~eF~~~~~-------~~~~~~~~F~~~D-~~~g~i~~~el~~~l~~~-~~~~~~~~~~~~ 111 (169)
..+..+|..||.+++|.++|.|.+..+. ....+..+|+.|+ +.+|.+...+|..+|+.. |.. .-.+--+
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~--~l~v~~l 336 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVE--VLRVPVL 336 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCcc--eeecccc
Confidence 5568899999999999999999988653 3478999999999 799999999999999864 433 3345567
Q ss_pred HHhcCCCCCCcccHHHHHHHHHHHHHHHHHHhh
Q 030933 112 CESFDQNKNGRLRLDDFISLCIFLQSARNLFNS 144 (169)
Q Consensus 112 ~~~~d~~~~~~i~~~eF~~~l~~~~~~~~~f~~ 144 (169)
|...+...+++|+|++|.+++..-+++..++..
T Consensus 337 f~~i~q~d~~ki~~~~f~~fa~~~p~~a~~~~~ 369 (412)
T KOG4666|consen 337 FPSIEQKDDPKIYASNFRKFAATEPNLALSELG 369 (412)
T ss_pred chhhhcccCcceeHHHHHHHHHhCchhhhhhhc
Confidence 888888889999999999999888887766544
No 84
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.03 E-value=8.6e-06 Score=37.41 Aligned_cols=25 Identities=20% Similarity=0.498 Sum_probs=19.1
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHH
Q 030933 7 LREWFDRVDSEKTGSIAAAQLKHAF 31 (169)
Q Consensus 7 l~~~F~~~D~~~~g~i~~~e~~~~l 31 (169)
|+++|..+|.|++|.|+..|+..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4567888888888888888887653
No 85
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.88 E-value=7.3e-05 Score=64.83 Aligned_cols=87 Identities=18% Similarity=0.416 Sum_probs=70.9
Q ss_pred HHHHHHHhhhh-CCCCeeeHHHHHHHHHHcCCCCC-------HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH------
Q 030933 71 LKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLD-------SPAFYTVCESFDQNKNGRLRLDDFISLCIFLQ------ 136 (169)
Q Consensus 71 ~~~~~~F~~~D-~~~g~i~~~el~~~l~~~~~~~~-------~~~~~~~~~~~d~~~~~~i~~~eF~~~l~~~~------ 136 (169)
.++..+|+.|| ..+|.++-.+|+..|+.+|++++ +.+++.++...|++.+|+|+..+|+.+|....
T Consensus 2253 ~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s 2332 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILS 2332 (2399)
T ss_pred HHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccc
Confidence 57889999999 68999999999999999998762 33799999999999999999999999997542
Q ss_pred --HHHHHHhhhCCCCceeEEeehhHH
Q 030933 137 --SARNLFNSFDTAKQGRITLDLNQF 160 (169)
Q Consensus 137 --~~~~~f~~~d~~~~g~i~~~~~~~ 160 (169)
.+...|..++. +..++ ++++-
T Consensus 2333 ~~eIE~AfraL~a-~~~yv--tke~~ 2355 (2399)
T KOG0040|consen 2333 SEEIEDAFRALDA-GKPYV--TKEEL 2355 (2399)
T ss_pred hHHHHHHHHHhhc-CCccc--cHHHH
Confidence 35667877777 44444 55554
No 86
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.82 E-value=0.00059 Score=55.94 Aligned_cols=125 Identities=25% Similarity=0.404 Sum_probs=102.1
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH--------------
Q 030933 5 AVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL-------------- 70 (169)
Q Consensus 5 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~-------------- 70 (169)
.+....|..+-+ +.|+|+-.+-+.++...+ ++...+..++..-|.+.||+++..||.-.++..
T Consensus 16 ~K~~~qF~~Lkp-~~gfitg~qArnfflqS~--LP~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkLqG~~lP~~LP 92 (1118)
T KOG1029|consen 16 QKHDAQFGQLKP-GQGFITGDQARNFFLQSG--LPTPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLKLQGIQLPPVLP 92 (1118)
T ss_pred HHHHHHHhccCC-CCCccchHhhhhhHHhcC--CChHHHHHHHHhhhcCccccchHHHHHHHHHHHHHHhcCCcCCCCCC
Confidence 344455666544 579999999999987655 667778999999999999999999998865421
Q ss_pred --------------------------------------------------------------------------------
Q 030933 71 -------------------------------------------------------------------------------- 70 (169)
Q Consensus 71 -------------------------------------------------------------------------------- 70 (169)
T Consensus 93 Psll~~~~~~~p~~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~spl~~~ss~s 172 (1118)
T KOG1029|consen 93 PSLLKQPPRNAPSTWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSNSPLPHDSSVS 172 (1118)
T ss_pred hHHhccCCcCCCCCCCccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCcchh
Confidence
Q ss_pred ----------------------HHHHHHHhhhhC-CCCeeeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHH
Q 030933 71 ----------------------LKVQHAFSDLER-GRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDD 127 (169)
Q Consensus 71 ----------------------~~~~~~F~~~D~-~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~e 127 (169)
-.-+++|..+|+ ..|++|..+-+.+|...+ ++...+..|+...|.|+||.++-+|
T Consensus 173 e~~~~~~s~~q~~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~dE 250 (1118)
T KOG1029|consen 173 EGRPSIESVNQLEEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSADE 250 (1118)
T ss_pred hcCccchhhhhhhhccccchhhhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHHH
Confidence 246789999995 899999999999998755 5577889999999999999999999
Q ss_pred HHHHHHH
Q 030933 128 FISLCIF 134 (169)
Q Consensus 128 F~~~l~~ 134 (169)
|.-.|-.
T Consensus 251 filam~l 257 (1118)
T KOG1029|consen 251 FILAMHL 257 (1118)
T ss_pred HHHHHHH
Confidence 9987653
No 87
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.82 E-value=7.9e-05 Score=57.46 Aligned_cols=57 Identities=23% Similarity=0.445 Sum_probs=48.2
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHhhhh-CCCCeeeHHHHHHHHHH
Q 030933 35 NLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLE-RGRGYLVPDNVYEALVK 98 (169)
Q Consensus 35 ~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~~~~~F~~~D-~~~g~i~~~el~~~l~~ 98 (169)
+.......+..+|+.+|.+++|.|+.+||+. ...+|..+| +++|.|+.+||.++++.
T Consensus 328 ~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~-------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 328 GGEAFTHAAQEIFRLYDLDGDGFITREEWLG-------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred ccChhhHHHHHHHHHhCCCCCCcCcHHHHHH-------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 5667778889999999999999999999864 467799999 78999999999988875
No 88
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.76 E-value=8.7e-05 Score=44.65 Aligned_cols=62 Identities=18% Similarity=0.393 Sum_probs=52.3
Q ss_pred HHHHHHhhhhCCCCeeeHHHHHHHHHHc-CC-CCCHHHHHHHHHhcCCC----CCCcccHHHHHHHHH
Q 030933 72 KVQHAFSDLERGRGYLVPDNVYEALVKI-GF-SLDSPAFYTVCESFDQN----KNGRLRLDDFISLCI 133 (169)
Q Consensus 72 ~~~~~F~~~D~~~g~i~~~el~~~l~~~-~~-~~~~~~~~~~~~~~d~~----~~~~i~~~eF~~~l~ 133 (169)
++..+|..|..+.+.||.++|.++|... +. ..+.+.+..++..+..+ ..+.+|.++|..+|.
T Consensus 1 ei~~if~~ys~~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~ 68 (83)
T PF09279_consen 1 EIEEIFRKYSSDKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLF 68 (83)
T ss_dssp HHHHHHHHHCTTSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHH
T ss_pred CHHHHHHHHhCCCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHC
Confidence 4678899998778999999999999875 44 47899999999998765 478999999999975
No 89
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.75 E-value=1.8e-05 Score=50.55 Aligned_cols=59 Identities=20% Similarity=0.294 Sum_probs=40.2
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHH
Q 030933 5 AVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVE 65 (169)
Q Consensus 5 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~ 65 (169)
..+.-.|..+|.+++|.|+..|+..+...+ ...+.-+..+++.+|.++++.|+..|+..
T Consensus 54 ~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 54 RVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 445556888999999999999988776644 45556677888889988889999888753
No 90
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.74 E-value=7e-05 Score=34.32 Aligned_cols=19 Identities=21% Similarity=0.459 Sum_probs=8.6
Q ss_pred HHhhhh-CCCCeeeHHHHHH
Q 030933 76 AFSDLE-RGRGYLVPDNVYE 94 (169)
Q Consensus 76 ~F~~~D-~~~g~i~~~el~~ 94 (169)
+|+.+| +++|.|+.+||.+
T Consensus 4 ~F~~~D~d~DG~is~~E~~~ 23 (25)
T PF13202_consen 4 AFQQFDTDGDGKISFEEFQR 23 (25)
T ss_dssp HHHHHTTTSSSEEEHHHHHH
T ss_pred HHHHHcCCCCCcCCHHHHHH
Confidence 444444 3444444444443
No 91
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.73 E-value=0.00017 Score=55.68 Aligned_cols=97 Identities=13% Similarity=0.205 Sum_probs=65.0
Q ss_pred cccHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHH--------HHHHHHHHHHhhhh-CCCCeeeHHH
Q 030933 21 SIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELN--------KFLLKVQHAFSDLE-RGRGYLVPDN 91 (169)
Q Consensus 21 ~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~--------~~~~~~~~~F~~~D-~~~g~i~~~e 91 (169)
.++..+|+-.+.. -+...+.+..=++.|..+. ...+.++.-. .....+..+|+.+| +++|.|+.+|
T Consensus 281 ~~~e~~f~~~~~~--~~ma~ekl~egi~~F~~d~---~~L~~~i~~~~~~~~~~~~~~~~l~~aF~~~D~dgdG~Is~~E 355 (391)
T PRK12309 281 HMDRATFDKMHAE--DRMASEKLDEGIKGFSKAL---ETLEKLLAHRLARLEGGEAFTHAAQEIFRLYDLDGDGFITREE 355 (391)
T ss_pred CCCHHHHHHHhcc--CchHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhccChhhHHHHHHHHHhCCCCCCcCcHHH
Confidence 3577777766652 2233344433334433222 3334444311 12357889999999 7999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 030933 92 VYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFL 135 (169)
Q Consensus 92 l~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l~~~ 135 (169)
|.. ++.+|..+|.|+||.|+++||...+...
T Consensus 356 ~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 356 WLG-------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred HHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 952 4678999999999999999999987654
No 92
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.64 E-value=3e-05 Score=49.53 Aligned_cols=60 Identities=20% Similarity=0.246 Sum_probs=43.3
Q ss_pred HHHHHHHHhhhh-CCCCeeeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 030933 70 LLKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISL 131 (169)
Q Consensus 70 ~~~~~~~F~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~ 131 (169)
...+.-.|..+| +++|.|+..|++.+...+ .-.+..+..+++.+|.|+|+.||..||..+
T Consensus 53 ~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 53 KRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp HHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 356777899999 789999999998776544 334556788999999999999999998764
No 93
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=97.60 E-value=0.00051 Score=45.17 Aligned_cols=89 Identities=13% Similarity=0.235 Sum_probs=67.7
Q ss_pred HHhhCCCCCCcccHHHHHHHHHcCCC-CCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH-----------HHHHHHHh
Q 030933 11 FDRVDSEKTGSIAAAQLKHAFAVGNL-DFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL-----------LKVQHAFS 78 (169)
Q Consensus 11 F~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~-----------~~~~~~F~ 78 (169)
...+..+|.|.++.++|..++.-+.- .+..-.+...|+.+|-++++.|.-++....+..+ ..+..+..
T Consensus 77 ~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvie 156 (189)
T KOG0038|consen 77 CEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIE 156 (189)
T ss_pred HHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Confidence 34556789999999999998876543 3334455667889999999999888887766443 24566677
Q ss_pred hhh-CCCCeeeHHHHHHHHHHc
Q 030933 79 DLE-RGRGYLVPDNVYEALVKI 99 (169)
Q Consensus 79 ~~D-~~~g~i~~~el~~~l~~~ 99 (169)
..| +|+|.++..+|.++....
T Consensus 157 EAD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 157 EADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred HhcCCCCCcccHHHHHHHHHhC
Confidence 778 899999999999988764
No 94
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.56 E-value=0.00054 Score=53.85 Aligned_cols=66 Identities=15% Similarity=0.398 Sum_probs=57.4
Q ss_pred HHHHHHHhhhhCCCCeeeHHHHHHHHHHcCCC---CCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 030933 71 LKVQHAFSDLERGRGYLVPDNVYEALVKIGFS---LDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQ 136 (169)
Q Consensus 71 ~~~~~~F~~~D~~~g~i~~~el~~~l~~~~~~---~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l~~~~ 136 (169)
..+...|...|+++|+++..++..++.+.+.+ ...+++++++...+.|.+|+|++++|+..+..+.
T Consensus 19 ~~l~~kF~~~d~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~ 87 (627)
T KOG0046|consen 19 RELKEKFNKLDDQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLK 87 (627)
T ss_pred HHHHHHHHhhcCCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhh
Confidence 45678899999999999999999999998755 3578899999999999999999999999765554
No 95
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.48 E-value=0.0013 Score=52.60 Aligned_cols=126 Identities=21% Similarity=0.280 Sum_probs=88.2
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHH-cCCCCCCHHHHHHHHHHhc---CCC--CCcccHHHHHHHHHHH-------
Q 030933 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFA-VGNLDFSLSVVQQMIRMYD---FDR--NGTMSFEEFVELNKFL------- 70 (169)
Q Consensus 4 ~~~l~~~F~~~D~~~~g~i~~~e~~~~l~-~~~~~~~~~~~~~l~~~~d---~~~--~~~i~~~eF~~~~~~~------- 70 (169)
++.+.++|...|.|.+|.++-.|+..+-. +++.++...++..+-.... +++ +..++..-|+-+....
T Consensus 194 v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lfiergr~E 273 (625)
T KOG1707|consen 194 VKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLFIERGRHE 273 (625)
T ss_pred HHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHHHHhcccc
Confidence 56788999999999999999999987765 4566777766655554443 222 4556677777654211
Q ss_pred -----------------------------------------HHHHHHHhhhh-CCCCeeeHHHHHHHHHHcCCCC--CHH
Q 030933 71 -----------------------------------------LKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSL--DSP 106 (169)
Q Consensus 71 -----------------------------------------~~~~~~F~~~D-~~~g~i~~~el~~~l~~~~~~~--~~~ 106 (169)
+-+..+|..|| +++|.++..|+..+++..+..- +.-
T Consensus 274 ttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~ 353 (625)
T KOG1707|consen 274 TTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSP 353 (625)
T ss_pred chhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCc
Confidence 46889999999 7999999999999999874321 001
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHH
Q 030933 107 AFYTVCESFDQNKNGRLRLDDFISLCI 133 (169)
Q Consensus 107 ~~~~~~~~~d~~~~~~i~~~eF~~~l~ 133 (169)
..+ ....+..|.++|+.|+....
T Consensus 354 ~~~----~t~~~~~G~ltl~g~l~~Ws 376 (625)
T KOG1707|consen 354 YKD----STVKNERGWLTLNGFLSQWS 376 (625)
T ss_pred ccc----cceecccceeehhhHHHHHH
Confidence 111 11123678999999998643
No 96
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.39 E-value=0.001 Score=47.56 Aligned_cols=112 Identities=14% Similarity=0.261 Sum_probs=80.3
Q ss_pred cccHHHHHHHHHcCCC-CCCHHHHHHHHHHhcCCCCCcccHHHHHHHH----H----------HHHHHHHHH-hhhh-CC
Q 030933 21 SIAAAQLKHAFAVGNL-DFSLSVVQQMIRMYDFDRNGTMSFEEFVELN----K----------FLLKVQHAF-SDLE-RG 83 (169)
Q Consensus 21 ~i~~~e~~~~l~~~~~-~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~----~----------~~~~~~~~F-~~~D-~~ 83 (169)
.++..||..+|..-.. ..-...++.+...+|.+++..++..+|+.+- . ..+.-...| ..+| +.
T Consensus 215 llteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNh 294 (362)
T KOG4251|consen 215 LLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNH 294 (362)
T ss_pred hhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCC
Confidence 4455777777653221 2334566788889999999999999999852 1 112333444 5567 68
Q ss_pred CCeeeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 030933 84 RGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLC 132 (169)
Q Consensus 84 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l 132 (169)
+|.+|.+|+..+.....+.++-.++..++...+.+++.+++.++.+..-
T Consensus 295 DGivTaeELe~y~dP~n~~~alne~~~~ma~~d~n~~~~Ls~eell~r~ 343 (362)
T KOG4251|consen 295 DGIVTAEELEDYVDPQNFRLALNEVNDIMALTDANNDEKLSLEELLERD 343 (362)
T ss_pred ccceeHHHHHhhcCchhhhhhHHHHHHHHhhhccCCCcccCHHHHHHHH
Confidence 9999999999887666666667778888888888999999999887653
No 97
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.36 E-value=0.00069 Score=53.27 Aligned_cols=65 Identities=25% Similarity=0.468 Sum_probs=57.0
Q ss_pred cHHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCC---CHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 030933 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDF---SLSVVQQMIRMYDFDRNGTMSFEEFVELNK 68 (169)
Q Consensus 3 ~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~---~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~ 68 (169)
+...+...|...| +++|+++..++..++...+... ..++++.++...+++.+|.|+|++|+.++.
T Consensus 17 El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~ 84 (627)
T KOG0046|consen 17 ELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFL 84 (627)
T ss_pred HHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHH
Confidence 4677889999999 9999999999999999876533 478899999999999999999999999653
No 98
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.28 E-value=0.0012 Score=39.67 Aligned_cols=62 Identities=15% Similarity=0.292 Sum_probs=47.3
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHcCCC--CCCHHHHHHHHHHhcCC----CCCcccHHHHHHHHH
Q 030933 6 VLREWFDRVDSEKTGSIAAAQLKHAFAVGNL--DFSLSVVQQMIRMYDFD----RNGTMSFEEFVELNK 68 (169)
Q Consensus 6 ~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~l~~~~d~~----~~~~i~~~eF~~~~~ 68 (169)
+|..+|..+.. +.+.|+..+|..+|+.-.. ..+..++..++..+.++ ..+.++++.|..++.
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~ 68 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLF 68 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHH
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHC
Confidence 57888999976 7899999999999986543 45788888888887544 356777777776653
No 99
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=97.24 E-value=0.0016 Score=48.38 Aligned_cols=96 Identities=15% Similarity=0.125 Sum_probs=79.7
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHcCCC-CCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH-----HHHHHHHh
Q 030933 5 AVLREWFDRVDSEKTGSIAAAQLKHAFAVGNL-DFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL-----LKVQHAFS 78 (169)
Q Consensus 5 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~-----~~~~~~F~ 78 (169)
..+..+|..+|.+++|.+++.|-...+.-++. ..++..++..|+.|+...||.+.-.+|.-++... -.+.-.|.
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~~l~v~~lf~ 338 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVEVLRVPVLFP 338 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCcceeeccccch
Confidence 45678999999999999999998888877655 5677888999999999999999988887776532 24667899
Q ss_pred hhh-CCCCeeeHHHHHHHHHHcC
Q 030933 79 DLE-RGRGYLVPDNVYEALVKIG 100 (169)
Q Consensus 79 ~~D-~~~g~i~~~el~~~l~~~~ 100 (169)
..+ ..+|.|+.++|+++....+
T Consensus 339 ~i~q~d~~ki~~~~f~~fa~~~p 361 (412)
T KOG4666|consen 339 SIEQKDDPKIYASNFRKFAATEP 361 (412)
T ss_pred hhhcccCcceeHHHHHHHHHhCc
Confidence 999 5899999999999887653
No 100
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.21 E-value=0.00058 Score=31.36 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=20.0
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHc
Q 030933 7 LREWFDRVDSEKTGSIAAAQLKHAFAV 33 (169)
Q Consensus 7 l~~~F~~~D~~~~g~i~~~e~~~~l~~ 33 (169)
++.+|..+|.+++|.|+..+|..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 556777778777788888887777653
No 101
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=96.92 E-value=0.013 Score=39.93 Aligned_cols=127 Identities=17% Similarity=0.139 Sum_probs=82.6
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHHhcCC---CCCcccHHHHHHHHHH------------
Q 030933 5 AVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFD---RNGTMSFEEFVELNKF------------ 69 (169)
Q Consensus 5 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~---~~~~i~~~eF~~~~~~------------ 69 (169)
-.|++-..-+|+|++|.|...|-...++.+|.++--..+..++-..... ..+-+.=.-|--.+..
T Consensus 7 T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~ 86 (174)
T PF05042_consen 7 TVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGA 86 (174)
T ss_pred cHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccc
Confidence 3566667788999999999999999999999877555544444332211 1111111111111110
Q ss_pred --------HHHHHHHHhhhhC-CCCeeeHHHHHHHHHHcCCC-------CCHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 030933 70 --------LLKVQHAFSDLER-GRGYLVPDNVYEALVKIGFS-------LDSPAFYTVCESFDQNKNGRLRLDDFISLC 132 (169)
Q Consensus 70 --------~~~~~~~F~~~D~-~~g~i~~~el~~~l~~~~~~-------~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l 132 (169)
.+.++.+|..|++ +.+.+|..|+.++++.-... .+.-+...++... .+.+|.++.+.-..+.
T Consensus 87 YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 87 YDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGVY 164 (174)
T ss_pred cccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhhc
Confidence 2689999999994 78999999999999974222 1233444444443 5778999998877654
No 102
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.92 E-value=0.005 Score=38.90 Aligned_cols=64 Identities=19% Similarity=0.314 Sum_probs=46.6
Q ss_pred cHHHHHHHHHhhCCCCCCcccHHHHHHHHHcC------CC---C-CCHHHHHHHHHH----hcCCCCCcccHHHHHHH
Q 030933 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVG------NL---D-FSLSVVQQMIRM----YDFDRNGTMSFEEFVEL 66 (169)
Q Consensus 3 ~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~------~~---~-~~~~~~~~l~~~----~d~~~~~~i~~~eF~~~ 66 (169)
+.+.--..|+..|-+++|.++--|+..++... |. + .++.++.+++.. -|.+++|.|+|.||++.
T Consensus 65 peqlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 65 PEQLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred HHHHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 33444568999999999999999999998842 22 2 345666665544 46678999999999763
No 103
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=96.88 E-value=0.012 Score=39.72 Aligned_cols=64 Identities=11% Similarity=0.204 Sum_probs=49.7
Q ss_pred HHHHHhhh----hCCCCeeeHHHHHHHHHHcCC---CCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 030933 73 VQHAFSDL----ERGRGYLVPDNVYEALVKIGF---SLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQ 136 (169)
Q Consensus 73 ~~~~F~~~----D~~~g~i~~~el~~~l~~~~~---~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l~~~~ 136 (169)
++.+|..| ..+...|+...|.++|+..++ .++..+++.+|..+-..+...|+|++|..+|..+.
T Consensus 1 L~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA 71 (154)
T PF05517_consen 1 LEAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELA 71 (154)
T ss_dssp HHHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHH
Confidence 35566666 356788999999999999753 48999999999998767777899999999987553
No 104
>PLN02952 phosphoinositide phospholipase C
Probab=96.85 E-value=0.012 Score=47.93 Aligned_cols=80 Identities=20% Similarity=0.286 Sum_probs=58.4
Q ss_pred CCCcccHHHHHHHHHHH--------HHHHHHHhhhhCCCCeeeHHHHHHHHHHc-CC-CCCHHHHHHHHHhcC-------
Q 030933 54 RNGTMSFEEFVELNKFL--------LKVQHAFSDLERGRGYLVPDNVYEALVKI-GF-SLDSPAFYTVCESFD------- 116 (169)
Q Consensus 54 ~~~~i~~~eF~~~~~~~--------~~~~~~F~~~D~~~g~i~~~el~~~l~~~-~~-~~~~~~~~~~~~~~d------- 116 (169)
+.|.++|++|..+++.. .++..+|..|..+++.|+.++|..+|... +. ..+.+.+..++..+-
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~ 92 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVT 92 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccc
Confidence 34789999998776644 48999999998655789999999999986 33 366666666655431
Q ss_pred CCCCCcccHHHHHHHHH
Q 030933 117 QNKNGRLRLDDFISLCI 133 (169)
Q Consensus 117 ~~~~~~i~~~eF~~~l~ 133 (169)
....+.++.++|..+|.
T Consensus 93 ~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 93 RYTRHGLNLDDFFHFLL 109 (599)
T ss_pred cccccCcCHHHHHHHHc
Confidence 11234689999999986
No 105
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.74 E-value=0.0049 Score=38.94 Aligned_cols=57 Identities=21% Similarity=0.330 Sum_probs=37.8
Q ss_pred HHHhhhh-CCCCeeeHHHHHHHHHHc------C---CCC-CHHH----HHHHHHhcCCCCCCcccHHHHHHH
Q 030933 75 HAFSDLE-RGRGYLVPDNVYEALVKI------G---FSL-DSPA----FYTVCESFDQNKNGRLRLDDFISL 131 (169)
Q Consensus 75 ~~F~~~D-~~~g~i~~~el~~~l~~~------~---~~~-~~~~----~~~~~~~~d~~~~~~i~~~eF~~~ 131 (169)
..|...| +++|.|.--|+.+++... | .++ ++.+ ++.+++.-|.|+||.|+|.||++.
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 4566667 677777777766666542 2 233 3334 445566678899999999999874
No 106
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.59 E-value=0.0037 Score=28.43 Aligned_cols=12 Identities=8% Similarity=0.097 Sum_probs=4.7
Q ss_pred CCeeeHHHHHHH
Q 030933 84 RGYLVPDNVYEA 95 (169)
Q Consensus 84 ~g~i~~~el~~~ 95 (169)
+|.|+..+|..+
T Consensus 14 ~g~i~~~e~~~~ 25 (29)
T smart00054 14 DGKIDFEEFKDL 25 (29)
T ss_pred CCcEeHHHHHHH
Confidence 333443333333
No 107
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.34 E-value=0.0073 Score=49.87 Aligned_cols=64 Identities=20% Similarity=0.410 Sum_probs=57.0
Q ss_pred cHHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 030933 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNK 68 (169)
Q Consensus 3 ~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~ 68 (169)
+..+++++|+.+|+..+|+++-..-+.+|...+ ++...+..++..-|.|+||.++-+||+-.+.
T Consensus 193 ~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 193 NKLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred hhhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHHHHHHHHH
Confidence 456889999999999999999999999997544 7778899999999999999999999988654
No 108
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=96.22 E-value=0.073 Score=45.10 Aligned_cols=91 Identities=15% Similarity=0.168 Sum_probs=72.0
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCCCH-----HHHHHHHHHhcCCCCCcccHHHHHHHHHH-------HH
Q 030933 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSL-----SVVQQMIRMYDFDRNGTMSFEEFVELNKF-------LL 71 (169)
Q Consensus 4 ~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~-----~~~~~l~~~~d~~~~~~i~~~eF~~~~~~-------~~ 71 (169)
..+++..|+.+++...|.++..++..+|..+|....+ .++..+....++..-|.|++.+|...+.+ ..
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l~~~~ 825 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDLDTEL 825 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhhhcHHH
Confidence 4678899999999999999999999999999986653 34455555556666688999999998754 35
Q ss_pred HHHHHHhhhhCCCCeeeHHHHHH
Q 030933 72 KVQHAFSDLERGRGYLVPDNVYE 94 (169)
Q Consensus 72 ~~~~~F~~~D~~~g~i~~~el~~ 94 (169)
.+..+|+.+-+.+-+|..+||..
T Consensus 826 r~i~s~~d~~ktk~~lL~eEL~~ 848 (890)
T KOG0035|consen 826 RAILAFEDWAKTKAYLLLEELVR 848 (890)
T ss_pred HHHHHHHHHHcchhHHHHHHHHh
Confidence 67788888886555888898887
No 109
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.46 E-value=0.042 Score=43.39 Aligned_cols=65 Identities=20% Similarity=0.390 Sum_probs=55.5
Q ss_pred ccHHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 030933 2 ENTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNK 68 (169)
Q Consensus 2 ~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~ 68 (169)
++.+-+..-|+.+-+|-+|.|+-.--++++.+. .++..++..||...|.+.+|.+++.||+..+.
T Consensus 228 EQReYYvnQFrtvQpDp~gfisGsaAknFFtKS--klpi~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 228 EQREYYVNQFRTVQPDPHGFISGSAAKNFFTKS--KLPIEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHHHHHHhhhhcccCCcccccccHHHHhhhhhc--cCchHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 345556677888889999999999999998853 47779999999999999999999999999764
No 110
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.25 E-value=0.68 Score=39.51 Aligned_cols=115 Identities=18% Similarity=0.386 Sum_probs=84.0
Q ss_pred CCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHHhcC--CCCCcc-----cHHHHHHHHHHH---HHHHHHHhhhh-CCC
Q 030933 16 SEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDF--DRNGTM-----SFEEFVELNKFL---LKVQHAFSDLE-RGR 84 (169)
Q Consensus 16 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~--~~~~~i-----~~~eF~~~~~~~---~~~~~~F~~~D-~~~ 84 (169)
.+..|+|....+...+.+ + -++..+......+.. +.+..| +++.|..++.++ .++..+|..+. +..
T Consensus 159 vn~~grip~knI~k~F~~-~--k~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klcpR~eie~iF~ki~~~~k 235 (1189)
T KOG1265|consen 159 VNFEGRIPVKNIIKTFSA-D--KKEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLCPRPEIEEIFRKISGKKK 235 (1189)
T ss_pred ccccccccHHHHHHHhhc-C--CchhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcCCchhHHHHHHHhccCCC
Confidence 456788888888877764 2 222444454544432 233344 466666666554 78999999999 777
Q ss_pred CeeeHHHHHHHHHHc---------CC-CCCHHHHHHHHHhcCCCC----CCcccHHHHHHHHH
Q 030933 85 GYLVPDNVYEALVKI---------GF-SLDSPAFYTVCESFDQNK----NGRLRLDDFISLCI 133 (169)
Q Consensus 85 g~i~~~el~~~l~~~---------~~-~~~~~~~~~~~~~~d~~~----~~~i~~~eF~~~l~ 133 (169)
.++|.++|..+|+.- -+ +.+++.+..++..+..++ +|.|+-+.|+.+++
T Consensus 236 pylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~ 298 (1189)
T KOG1265|consen 236 PYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLM 298 (1189)
T ss_pred ccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhh
Confidence 999999999999863 22 467889999999999885 68999999999986
No 111
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=94.63 E-value=0.39 Score=32.40 Aligned_cols=62 Identities=10% Similarity=0.148 Sum_probs=46.5
Q ss_pred HHHHHhh---CCCCCCcccHHHHHHHHHcCCC---CCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 030933 8 REWFDRV---DSEKTGSIAAAQLKHAFAVGNL---DFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF 69 (169)
Q Consensus 8 ~~~F~~~---D~~~~g~i~~~e~~~~l~~~~~---~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~ 69 (169)
+.+|..| -..+...|+...|..+++.-++ .++...+..+|..+...+...|+|++|+..+..
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~ 69 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAE 69 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHH
Confidence 3455555 4556688999999999997554 578899999999987777778999999887653
No 112
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.45 E-value=0.1 Score=44.65 Aligned_cols=128 Identities=20% Similarity=0.309 Sum_probs=103.6
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH--------------
Q 030933 5 AVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL-------------- 70 (169)
Q Consensus 5 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~-------------- 70 (169)
..+...|+.+|..+.|+|+..+-..++.. ..++...+-.+|...|..+.|.++..+|..-++..
T Consensus 11 ~~~~~~~~~~d~~~~G~i~g~~a~~f~~~--s~L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlva~aq~~~~~~~~~~ 88 (847)
T KOG0998|consen 11 PLFDQYFKSADPQGDGRITGAEAVAFLSK--SGLPDQVLGQIWSLADSSGKGFLNRQGFYAALRLVAQAQSGRELSAKKV 88 (847)
T ss_pred chHHHhhhccCcccCCcccHHHhhhhhhc--cccchhhhhccccccccccCCccccccccccchHhhhhhcccCcCcccc
Confidence 35677899999999999999999998884 44777888889999999888999999988854321
Q ss_pred ----------------------------------------HHHHHHHhhhhCCCCeeeHHHHHHHHHHcCCCCCHHHHHH
Q 030933 71 ----------------------------------------LKVQHAFSDLERGRGYLVPDNVYEALVKIGFSLDSPAFYT 110 (169)
Q Consensus 71 ----------------------------------------~~~~~~F~~~D~~~g~i~~~el~~~l~~~~~~~~~~~~~~ 110 (169)
.....+|+....+.|.++.+..+.+|..-+ +..+.+..
T Consensus 89 ~~~~~~pp~~~~~~~~~~~~~~~~~~s~~~~~p~~~~qe~aky~q~f~s~~p~~g~~sg~~~~pil~~s~--Lp~~~l~~ 166 (847)
T KOG0998|consen 89 LPASAVPPPPKISHDTSPPSRPSSSTSAAPFVPAITPQEQAKYDQIFRSLSPSNGLLSGDKAKPILLNSK--LPSDVLGR 166 (847)
T ss_pred ccccCCCCCCccCccCCCcccCCCCCCCcccCCCCCHHHHHHHHHHHhccCCCCCccccchhhhhhhcCC--CChhhhcc
Confidence 245566777777899999999998887644 55677778
Q ss_pred HHHhcCCCCCCcccHHHHHHHHHHHH
Q 030933 111 VCESFDQNKNGRLRLDDFISLCIFLQ 136 (169)
Q Consensus 111 ~~~~~d~~~~~~i~~~eF~~~l~~~~ 136 (169)
++...|.+.+|.++..||.-.+-...
T Consensus 167 iw~l~d~d~~g~Ld~~ef~~am~l~~ 192 (847)
T KOG0998|consen 167 IWELSDIDKDGNLDRDEFAVAMHLIN 192 (847)
T ss_pred ccccccccccCCCChhhhhhhhhHHH
Confidence 89999999999999999998875443
No 113
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=94.39 E-value=0.041 Score=31.73 Aligned_cols=53 Identities=17% Similarity=0.315 Sum_probs=36.8
Q ss_pred HHHHHHHhhhhCCCCeeeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCC-------CCcccHHHHHH
Q 030933 71 LKVQHAFSDLERGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNK-------NGRLRLDDFIS 130 (169)
Q Consensus 71 ~~~~~~F~~~D~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~-------~~~i~~~eF~~ 130 (169)
+.+..+|+.+..++++||.+||++.|.. +..+.++..+..-. .|..+|..|+.
T Consensus 6 eqv~~aFr~lA~~KpyVT~~dLr~~l~p-------e~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 6 EQVEEAFRALAGGKPYVTEEDLRRSLTP-------EQAEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp HHHHHHHHHHCTSSSCEEHHHHHHHS-C-------CCHHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred HHHHHHHHHHHcCCCcccHHHHHHHcCc-------HHHHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 5688999999878999999999988642 33355555544322 26688888864
No 114
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=94.34 E-value=0.14 Score=38.70 Aligned_cols=95 Identities=13% Similarity=0.151 Sum_probs=58.1
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHcCCC---CCCHHHHHHHHHHhcCCCCCcccHHHHHHHHH--HHHHHHHHHhhh
Q 030933 6 VLREWFDRVDSEKTGSIAAAQLKHAFAVGNL---DFSLSVVQQMIRMYDFDRNGTMSFEEFVELNK--FLLKVQHAFSDL 80 (169)
Q Consensus 6 ~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~---~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~--~~~~~~~~F~~~ 80 (169)
+|++||+.+-.+.++......+...-..+.. ++=..++.-+|..+|.+.++.++..|...+.. ...-++..|...
T Consensus 212 RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ldknE~CikpFfnsC 291 (434)
T KOG3555|consen 212 RLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELDKNEACIKPFFNSC 291 (434)
T ss_pred HHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhccCchhHHHHHHhhh
Confidence 5677777776666665555555444333322 22236667777777777777777777766543 234556666666
Q ss_pred h-CCCCeeeHHHHHHHHHHcC
Q 030933 81 E-RGRGYLVPDNVYEALVKIG 100 (169)
Q Consensus 81 D-~~~g~i~~~el~~~l~~~~ 100 (169)
| -.+|.|+..|+..-+..-+
T Consensus 292 D~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 292 DTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred cccccCccccchhhhhhccCC
Confidence 6 3677777777766665544
No 115
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=94.30 E-value=0.59 Score=28.50 Aligned_cols=61 Identities=13% Similarity=0.187 Sum_probs=39.4
Q ss_pred HHHHHHHhhhhCCCCeeeHHHHHHHHHHc-------CC----CCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 030933 71 LKVQHAFSDLERGRGYLVPDNVYEALVKI-------GF----SLDSPAFYTVCESFDQNKNGRLRLDDFISLCI 133 (169)
Q Consensus 71 ~~~~~~F~~~D~~~g~i~~~el~~~l~~~-------~~----~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l~ 133 (169)
++.+.+|+.+.+.+|.++...|..+|..+ |. .-.+..++..|... .....|+.+.|+..+.
T Consensus 3 dKyRylFslisd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~ 74 (90)
T PF09069_consen 3 DKYRYLFSLISDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLM 74 (90)
T ss_dssp HHHHHHHHHHS-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHH
Confidence 46788898888888999999888888763 21 12566677777776 3456799999998875
No 116
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=93.73 E-value=0.12 Score=46.07 Aligned_cols=58 Identities=19% Similarity=0.377 Sum_probs=50.1
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 030933 9 EWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELN 67 (169)
Q Consensus 9 ~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~ 67 (169)
+.|+.+|+++.|.|+..+|.+++.. ....+..++.-++.-...+.+...+|++|+.-+
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~-~k~ytqse~dfllscae~dend~~~y~dfv~rf 4118 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEG-HKHYTQSEIDFLLSCAEADENDMFDYEDFVDRF 4118 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhc-cccchhHHHHHHHHhhccCccccccHHHHHHHh
Confidence 3578899999999999999999985 446788888888888888888999999999854
No 117
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=93.57 E-value=0.47 Score=32.45 Aligned_cols=31 Identities=10% Similarity=0.133 Sum_probs=25.9
Q ss_pred CHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 030933 104 DSPAFYTVCESFDQNKNGRLRLDDFISLCIF 134 (169)
Q Consensus 104 ~~~~~~~~~~~~d~~~~~~i~~~eF~~~l~~ 134 (169)
-++.++++|..++..+.+.+|+.|...++.-
T Consensus 94 vp~kFe~iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 94 VPQKFEEIFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred CHHHHHHHHHHhCCCCCCCcCHHHHHHHHHh
Confidence 4677899999999888888999999888753
No 118
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.47 E-value=0.11 Score=44.46 Aligned_cols=62 Identities=16% Similarity=0.310 Sum_probs=49.3
Q ss_pred cHHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 030933 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELN 67 (169)
Q Consensus 3 ~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~ 67 (169)
+..++..+|....+. +|.++....+.+|.. -.++...+.+++...|.+.+|.++..||...+
T Consensus 127 e~aky~q~f~s~~p~-~g~~sg~~~~pil~~--s~Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am 188 (847)
T KOG0998|consen 127 EQAKYDQIFRSLSPS-NGLLSGDKAKPILLN--SKLPSDVLGRIWELSDIDKDGNLDRDEFAVAM 188 (847)
T ss_pred HHHHHHHHHhccCCC-CCccccchhhhhhhc--CCCChhhhccccccccccccCCCChhhhhhhh
Confidence 446677778888766 789998888888874 34666777889999999999999999998855
No 119
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=93.44 E-value=0.31 Score=43.63 Aligned_cols=58 Identities=12% Similarity=0.276 Sum_probs=50.1
Q ss_pred HHHHhhhh-CCCCeeeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 030933 74 QHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLC 132 (169)
Q Consensus 74 ~~~F~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l 132 (169)
...|+.|| +|.|.|+..+|.+++... -+.+..+++-++.....+.+...+|++|+.-+
T Consensus 4060 sdtfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rf 4118 (5019)
T KOG2243|consen 4060 SDTFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRF 4118 (5019)
T ss_pred cccchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHh
Confidence 46699999 799999999999999754 34678899999999998999999999999865
No 120
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=92.48 E-value=0.074 Score=39.91 Aligned_cols=22 Identities=14% Similarity=0.061 Sum_probs=10.3
Q ss_pred HHHhhhh-CCCCeeeHHHHHHHH
Q 030933 75 HAFSDLE-RGRGYLVPDNVYEAL 96 (169)
Q Consensus 75 ~~F~~~D-~~~g~i~~~el~~~l 96 (169)
..|+..| +++-.||.+|++.-|
T Consensus 374 k~~~yCDlNkDKkISl~Ew~~CL 396 (421)
T KOG4578|consen 374 KFFKYCDLNKDKKISLDEWRGCL 396 (421)
T ss_pred hcchhcccCCCceecHHHHhhhh
Confidence 3344444 444455555554444
No 121
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=92.41 E-value=0.28 Score=40.80 Aligned_cols=89 Identities=20% Similarity=0.332 Sum_probs=50.3
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHH------HHHHHHHhhhh-CCCCeeeHHHHHHHHHHcCCCCCHHHHHHHHH
Q 030933 41 SVVQQMIRMYDFDRNGTMSFEEFVELNKFL------LKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCE 113 (169)
Q Consensus 41 ~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~------~~~~~~F~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~ 113 (169)
..+..++...|.+++|.+++.+-..+.... ..+...|+..+ .++|.+...++.++...+... + ++..++.
T Consensus 136 ~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~r--p-ev~~~f~ 212 (746)
T KOG0169|consen 136 HWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKR--P-EVYFLFV 212 (746)
T ss_pred HHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccC--c-hHHHHHH
Confidence 445566666666666666666665554322 34555565556 366666666666666554422 2 4555555
Q ss_pred hcCCCCCCcccHHHHHHHHH
Q 030933 114 SFDQNKNGRLRLDDFISLCI 133 (169)
Q Consensus 114 ~~d~~~~~~i~~~eF~~~l~ 133 (169)
.+..+ .+.++-++...++.
T Consensus 213 ~~s~~-~~~ls~~~L~~Fl~ 231 (746)
T KOG0169|consen 213 QYSHG-KEYLSTDDLLRFLE 231 (746)
T ss_pred HHhCC-CCccCHHHHHHHHH
Confidence 55433 55666666666554
No 122
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=92.39 E-value=0.11 Score=39.08 Aligned_cols=61 Identities=15% Similarity=0.071 Sum_probs=38.0
Q ss_pred HHHHHhhhh-CCCCeeeHHHHHHHHHHcC-CCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 030933 73 VQHAFSDLE-RGRGYLVPDNVYEALVKIG-FSLDSPAFYTVCESFDQNKNGRLRLDDFISLCI 133 (169)
Q Consensus 73 ~~~~F~~~D-~~~g~i~~~el~~~l~~~~-~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l~ 133 (169)
+...|..+| +.++.|...|++.+=.-+. -.-...-...+++.+|.|+|..||+.||..+|.
T Consensus 335 v~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~ 397 (421)
T KOG4578|consen 335 VHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLG 397 (421)
T ss_pred eeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhc
Confidence 445577777 5677777777544332221 112244556777778888888888888877764
No 123
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=91.80 E-value=0.37 Score=36.56 Aligned_cols=59 Identities=15% Similarity=0.204 Sum_probs=49.9
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 030933 5 AVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELN 67 (169)
Q Consensus 5 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~ 67 (169)
..+.=||+.+|-+.+|.++..|++.+-. .-.+.-++.+|..+|...+|.|+-.|...-+
T Consensus 250 ds~gWMFnklD~N~Dl~Ld~sEl~~I~l----dknE~CikpFfnsCD~~kDg~iS~~EWC~CF 308 (434)
T KOG3555|consen 250 DSLGWMFNKLDTNYDLLLDQSELRAIEL----DKNEACIKPFFNSCDTYKDGSISTNEWCYCF 308 (434)
T ss_pred hhhhhhhhccccccccccCHHHhhhhhc----cCchhHHHHHHhhhcccccCccccchhhhhh
Confidence 3455689999999999999999987643 4556778999999999999999999998754
No 124
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=91.37 E-value=0.49 Score=38.37 Aligned_cols=67 Identities=18% Similarity=0.249 Sum_probs=55.3
Q ss_pred cHHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 030933 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF 69 (169)
Q Consensus 3 ~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~ 69 (169)
+....+..|..+|.++.|+++..+...+|...+..++...+.++....+...+|.+...+|..++..
T Consensus 591 ~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~ 657 (680)
T KOG0042|consen 591 DFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSA 657 (680)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHH
Confidence 4455667788899988899999999999998887888888888888888887888888888877653
No 125
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.89 E-value=0.5 Score=37.65 Aligned_cols=57 Identities=18% Similarity=0.310 Sum_probs=48.9
Q ss_pred HHHhhhh-CCCCeeeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 030933 75 HAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCI 133 (169)
Q Consensus 75 ~~F~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l~ 133 (169)
.-|+-+. +-.|.|+-.--+.++.+-. +...++.-|+...|.+.||.++..||+..+-
T Consensus 235 nQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 235 NQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred hhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 3467777 6789999999999998754 5578899999999999999999999999874
No 126
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=89.80 E-value=0.76 Score=37.34 Aligned_cols=65 Identities=20% Similarity=0.311 Sum_probs=57.6
Q ss_pred HHHHHHhhhh-CCCCeeeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 030933 72 KVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQ 136 (169)
Q Consensus 72 ~~~~~F~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l~~~~ 136 (169)
..+.-|..+| ++.|+++..+..++|+..+.+.+.+.+..+.+..+.+-.|.+...||.+++..+.
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~ 659 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIK 659 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHh
Confidence 4556788999 5999999999999999998889999999999999988899999999999876554
No 127
>PLN02222 phosphoinositide phospholipase C 2
Probab=89.51 E-value=1.7 Score=35.78 Aligned_cols=61 Identities=15% Similarity=0.260 Sum_probs=34.2
Q ss_pred HHHHHHhhhhCCCCeeeHHHHHHHHHHc-CC-CCCHHHHHHHHHhcCC-CCCCcccHHHHHHHHH
Q 030933 72 KVQHAFSDLERGRGYLVPDNVYEALVKI-GF-SLDSPAFYTVCESFDQ-NKNGRLRLDDFISLCI 133 (169)
Q Consensus 72 ~~~~~F~~~D~~~g~i~~~el~~~l~~~-~~-~~~~~~~~~~~~~~d~-~~~~~i~~~eF~~~l~ 133 (169)
++..+|..|.. ++.++.++|..+|... |. ..+.+.+..++..+.. ...+.++.+.|..+|.
T Consensus 26 ei~~if~~~~~-~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~ 89 (581)
T PLN02222 26 EIKTIFEKYSE-NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLF 89 (581)
T ss_pred HHHHHHHHhcC-CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhc
Confidence 45555555543 3466666666666654 22 2455556666665432 1344577777777764
No 128
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=89.09 E-value=1 Score=33.85 Aligned_cols=92 Identities=17% Similarity=0.143 Sum_probs=61.1
Q ss_pred HHHHHHhhhhC---CCCeeeHHHHHHHHHHc-CCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH------------
Q 030933 72 KVQHAFSDLER---GRGYLVPDNVYEALVKI-GFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFL------------ 135 (169)
Q Consensus 72 ~~~~~F~~~D~---~~g~i~~~el~~~l~~~-~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l~~~------------ 135 (169)
.....-+.+.+ -+-.=|.++++.++... |..-..-+-..+|...|.|+||.++-.|....+..-
T Consensus 206 k~EE~~krH~~HpKvnhPGSkdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeD 285 (442)
T KOG3866|consen 206 KHEESLKRHNDHPKVNHPGSKDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEED 285 (442)
T ss_pred HHHHHHHhhccCccCCCCCcHHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcch
Confidence 34444555542 23444678888888875 333222233467888999999999999888877531
Q ss_pred ---------HHHHH-HHhhhCCCCceeEEeehhHHHHHhh
Q 030933 136 ---------QSARN-LFNSFDTAKQGRITLDLNQFIFCTA 165 (169)
Q Consensus 136 ---------~~~~~-~f~~~d~~~~g~i~~~~~~~~~~~~ 165 (169)
-.+++ +-+.+|.|.+..| |.++|++..-
T Consensus 286 DM~EmeEErlRMREHVMk~vDtNqDRlv--tleEFL~~t~ 323 (442)
T KOG3866|consen 286 DMKEMEEERLRMREHVMKQVDTNQDRLV--TLEEFLNDTD 323 (442)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchhhhh--hHHHHHhhhh
Confidence 12333 5677899999988 8999987653
No 129
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=88.65 E-value=1.2 Score=36.76 Aligned_cols=51 Identities=18% Similarity=0.291 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHH------HHHHHHHHhhhh-CCCCeeeHHHH
Q 030933 41 SVVQQMIRMYDFDRNGTMSFEEFVELNKF------LLKVQHAFSDLE-RGRGYLVPDNV 92 (169)
Q Consensus 41 ~~~~~l~~~~d~~~~~~i~~~eF~~~~~~------~~~~~~~F~~~D-~~~g~i~~~el 92 (169)
.-+.++|...|.+.+|.++|.+++..+.. .+.+...|+.|| ++. ....++.
T Consensus 555 ~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 555 IFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 44566777777777777777777775543 256667777777 555 6666655
No 130
>PLN02952 phosphoinositide phospholipase C
Probab=88.02 E-value=6.5 Score=32.62 Aligned_cols=80 Identities=13% Similarity=0.103 Sum_probs=57.5
Q ss_pred CCCcccHHHHHHHHHcCCC--CCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH--------HHHHHHHhhhh------
Q 030933 18 KTGSIAAAQLKHAFAVGNL--DFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL--------LKVQHAFSDLE------ 81 (169)
Q Consensus 18 ~~g~i~~~e~~~~l~~~~~--~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~--------~~~~~~F~~~D------ 81 (169)
+.|.+++.+|..+.+.+.. ..+..++..+|..+..++ +.++.++|..++... +.+..++..+-
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 4689999999988886643 347899999999996544 689999999998653 23344443321
Q ss_pred --CCCCeeeHHHHHHHHHH
Q 030933 82 --RGRGYLVPDNVYEALVK 98 (169)
Q Consensus 82 --~~~g~i~~~el~~~l~~ 98 (169)
.+.+.++.+.|..+|..
T Consensus 92 ~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred ccccccCcCHHHHHHHHcC
Confidence 13356899999988863
No 131
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=87.99 E-value=4.4 Score=24.73 Aligned_cols=62 Identities=11% Similarity=0.172 Sum_probs=38.6
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHc-------CC----CCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 030933 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAV-------GN----LDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNK 68 (169)
Q Consensus 4 ~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~-------~~----~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~ 68 (169)
.++++.+|+.+ .|++|.++...|..+|+. ++ .+..+..++.-|... .....|+.++|+..+.
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~ 74 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLM 74 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHH
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHH
Confidence 36788899999 577899999999998884 11 122556666666654 2446688888888664
No 132
>PLN02230 phosphoinositide phospholipase C 4
Probab=87.41 E-value=3.4 Score=34.18 Aligned_cols=64 Identities=16% Similarity=0.205 Sum_probs=41.9
Q ss_pred HHHHHHHhhhhCCCCeeeHHHHHHHHHHcC-C--CCCHHHHHHHHHhcCC-------CCCCcccHHHHHHHHHH
Q 030933 71 LKVQHAFSDLERGRGYLVPDNVYEALVKIG-F--SLDSPAFYTVCESFDQ-------NKNGRLRLDDFISLCIF 134 (169)
Q Consensus 71 ~~~~~~F~~~D~~~g~i~~~el~~~l~~~~-~--~~~~~~~~~~~~~~d~-------~~~~~i~~~eF~~~l~~ 134 (169)
.++..+|..|..+++.++.++|.++|.... . ..+.++...++..+.. -..+.++.+.|..+|..
T Consensus 29 ~ei~~lf~~~s~~~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 29 ADVRDLFEKYADGDAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred HHHHHHHHHHhCCCCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 467777777764447888888888888753 2 2455555556554321 12346999999998853
No 133
>PLN02228 Phosphoinositide phospholipase C
Probab=87.24 E-value=3.7 Score=33.79 Aligned_cols=61 Identities=15% Similarity=0.287 Sum_probs=30.0
Q ss_pred HHHHHHhhhhCCCCeeeHHHHHHHHHHc-CCC-CCHHHHHHHHHhcCCC----CCCcccHHHHHHHHH
Q 030933 72 KVQHAFSDLERGRGYLVPDNVYEALVKI-GFS-LDSPAFYTVCESFDQN----KNGRLRLDDFISLCI 133 (169)
Q Consensus 72 ~~~~~F~~~D~~~g~i~~~el~~~l~~~-~~~-~~~~~~~~~~~~~d~~----~~~~i~~~eF~~~l~ 133 (169)
++..+|..+..+ +.|+.++|..+|... |.. .+.+.+..++..+... ..+.++.++|..+|.
T Consensus 25 ei~~if~~~s~~-~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~ 91 (567)
T PLN02228 25 SIKRLFEAYSRN-GKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLF 91 (567)
T ss_pred HHHHHHHHhcCC-CccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhc
Confidence 334444444321 345555555555543 221 3344455556555432 234577777777764
No 134
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=87.09 E-value=4.4 Score=30.56 Aligned_cols=60 Identities=15% Similarity=0.218 Sum_probs=41.5
Q ss_pred HHHHhhhh-CCCCeeeHHHHHHHHHHc-----CCCCCHHHH-----------HHHHHhcCCCCCCcccHHHHHHHHH
Q 030933 74 QHAFSDLE-RGRGYLVPDNVYEALVKI-----GFSLDSPAF-----------YTVCESFDQNKNGRLRLDDFISLCI 133 (169)
Q Consensus 74 ~~~F~~~D-~~~g~i~~~el~~~l~~~-----~~~~~~~~~-----------~~~~~~~d~~~~~~i~~~eF~~~l~ 133 (169)
..-|..+| +++|++.-.|+..++..- .....++++ +-+.+..|.|.|.-||.+||++.-.
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~ 323 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTD 323 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhh
Confidence 34577788 788999888888777642 222222221 3356779999999999999998743
No 135
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=86.87 E-value=0.65 Score=29.54 Aligned_cols=31 Identities=26% Similarity=0.455 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 030933 103 LDSPAFYTVCESFDQNKNGRLRLDDFISLCI 133 (169)
Q Consensus 103 ~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l~ 133 (169)
++++.++.++..+..|..|.+.|.+|+.-+.
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 6899999999999999999999999998765
No 136
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=86.31 E-value=4.6 Score=23.22 Aligned_cols=49 Identities=14% Similarity=0.093 Sum_probs=36.3
Q ss_pred eeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 030933 87 LVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFL 135 (169)
Q Consensus 87 i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l~~~ 135 (169)
++.+++..++...|..+|..++..+++.-+..+-..++-+.+..+|.-+
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL~GL 62 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFLNGL 62 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHHHHH
Confidence 3447888888888999999999999888665555566767676666533
No 137
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=85.96 E-value=0.92 Score=37.29 Aligned_cols=56 Identities=18% Similarity=0.254 Sum_probs=48.8
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCCcccHHHH
Q 030933 7 LREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEF 63 (169)
Q Consensus 7 l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF 63 (169)
+.++|...|..++|.++..++...|..+..+-.-+.+..+++.++++++ ..+.++-
T Consensus 557 ~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 557 LERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 4678999999999999999999999987766666788899999999988 7777776
No 138
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=85.13 E-value=6.2 Score=23.73 Aligned_cols=52 Identities=4% Similarity=-0.003 Sum_probs=41.2
Q ss_pred CeeeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 030933 85 GYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQ 136 (169)
Q Consensus 85 g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l~~~~ 136 (169)
..||.+||.+..+..|++++++..+.++..+..+.=...+-++=..++..+.
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia 64 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIA 64 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999999999988766655566666556655443
No 139
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=85.12 E-value=6.4 Score=33.83 Aligned_cols=129 Identities=22% Similarity=0.245 Sum_probs=79.1
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCCCHHH-HHHHHHHhcCCCCCcccHHHHHHHHHHH-----HHHHHHH--
Q 030933 6 VLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSV-VQQMIRMYDFDRNGTMSFEEFVELNKFL-----LKVQHAF-- 77 (169)
Q Consensus 6 ~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~-~~~l~~~~d~~~~~~i~~~eF~~~~~~~-----~~~~~~F-- 77 (169)
.++..+-..|...-..|+..+++..|...++..+... +..-+.. +..+.+.++|++|..+..++ .....-|
T Consensus 145 wlrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~te-d~~~k~dlsf~~f~~ly~~lmfs~~~a~l~e~~~ 223 (1267)
T KOG1264|consen 145 WLRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTE-DGARKDDLSFEQFHLLYKKLMFSQQKAILLEFKK 223 (1267)
T ss_pred HHHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhH-hhhccccccHHHHHHHHHHHhhccchhhhhcccc
Confidence 3455566677667778999999999987776555432 2222222 23456789999999987654 1111112
Q ss_pred ----hhhh-CCCCeeeHHHHHHHHHHcCCCC---CHHHHHHHHHhcCCC-----CCCcccHHHHHHHHHHH
Q 030933 78 ----SDLE-RGRGYLVPDNVYEALVKIGFSL---DSPAFYTVCESFDQN-----KNGRLRLDDFISLCIFL 135 (169)
Q Consensus 78 ----~~~D-~~~g~i~~~el~~~l~~~~~~~---~~~~~~~~~~~~d~~-----~~~~i~~~eF~~~l~~~ 135 (169)
..-+ .....++..+|.++|....... ....++.+.+.+-.| ....++..||+.+|-..
T Consensus 224 ~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv~fLFSr 294 (1267)
T KOG1264|consen 224 DFILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKFIDDTMRETAEPYLFVDEFVTFLFSR 294 (1267)
T ss_pred hhhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHHHHHhhc
Confidence 1112 1346799999999998643221 122355555544332 34579999999998643
No 140
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=84.96 E-value=6.8 Score=32.25 Aligned_cols=62 Identities=18% Similarity=0.215 Sum_probs=44.5
Q ss_pred HHHHHHHhhhh-CCCCeeeHHHHHHHHHH-cCCCCCHHHHHHHHHhcCC---CC--CCcccHHHHHHHH
Q 030933 71 LKVQHAFSDLE-RGRGYLVPDNVYEALVK-IGFSLDSPAFYTVCESFDQ---NK--NGRLRLDDFISLC 132 (169)
Q Consensus 71 ~~~~~~F~~~D-~~~g~i~~~el~~~l~~-~~~~~~~~~~~~~~~~~d~---~~--~~~i~~~eF~~~l 132 (169)
..+.++|+..| +++|.++-.|+-.+-+. ++.+++..+++.+-..... ++ +..++...|+..-
T Consensus 195 ~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~ 263 (625)
T KOG1707|consen 195 KALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLN 263 (625)
T ss_pred HHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHH
Confidence 57889999999 79999999998877765 5788888777665554332 22 3456666776544
No 141
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=84.23 E-value=4.2 Score=35.06 Aligned_cols=65 Identities=11% Similarity=0.235 Sum_probs=50.8
Q ss_pred HHHHHHHhhhh-CCCCeeeHHHHHHHHHHcCCCCCH-----HHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 030933 71 LKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDS-----PAFYTVCESFDQNKNGRLRLDDFISLCIFL 135 (169)
Q Consensus 71 ~~~~~~F~~~D-~~~g~i~~~el~~~l~~~~~~~~~-----~~~~~~~~~~d~~~~~~i~~~eF~~~l~~~ 135 (169)
.+++..|..++ ...|.++.+++...|..+|.+.-. +++..+...-+.+..|.+++.+|...|.+-
T Consensus 747 ~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~ 817 (890)
T KOG0035|consen 747 DELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLERE 817 (890)
T ss_pred HHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhh
Confidence 57889999999 478899999999999999988664 223334445555666889999999998653
No 142
>PLN02223 phosphoinositide phospholipase C
Probab=83.77 E-value=5.1 Score=32.70 Aligned_cols=64 Identities=11% Similarity=0.016 Sum_probs=40.7
Q ss_pred HHHHHHHhhhhCCCCeeeHHHHHHHH---HHc-C-CCCCHHHHHHHHHhcCCC--------CCCcccHHHHHHHHHH
Q 030933 71 LKVQHAFSDLERGRGYLVPDNVYEAL---VKI-G-FSLDSPAFYTVCESFDQN--------KNGRLRLDDFISLCIF 134 (169)
Q Consensus 71 ~~~~~~F~~~D~~~g~i~~~el~~~l---~~~-~-~~~~~~~~~~~~~~~d~~--------~~~~i~~~eF~~~l~~ 134 (169)
+.+..+|..|..+.|.++.+.+.++| ... | ...+.++.+.++..+-.. ..+.++.+.|..+|..
T Consensus 16 ~~v~~~f~~~~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 16 DLILNFFGNEFHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 45677777776667778888877777 443 3 235555655555543221 2256999999998853
No 143
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=83.15 E-value=1.3 Score=28.18 Aligned_cols=33 Identities=9% Similarity=0.190 Sum_probs=23.5
Q ss_pred CCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 030933 37 DFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF 69 (169)
Q Consensus 37 ~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~ 69 (169)
-++++++++++..+-.+..|+|.|.+|+.-+..
T Consensus 3 iLtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 3 ILTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSS 35 (118)
T ss_dssp ---HHHHHHHHTTS-B-TTS-EEHHHHHHHT--
T ss_pred cccHHHhhhhhhhCcCCccCCEeHHHHHHHccc
Confidence 368899999999999999999999999986653
No 144
>PLN02228 Phosphoinositide phospholipase C
Probab=82.88 E-value=7.9 Score=31.94 Aligned_cols=64 Identities=14% Similarity=0.232 Sum_probs=49.1
Q ss_pred ccHHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCC--CCCHHHHHHHHHHhcCC----CCCcccHHHHHHHH
Q 030933 2 ENTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNL--DFSLSVVQQMIRMYDFD----RNGTMSFEEFVELN 67 (169)
Q Consensus 2 ~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~l~~~~d~~----~~~~i~~~eF~~~~ 67 (169)
+...+|..+|..+..+ +.++.++|..+|..... ..+...+..++..+... ..+.++.+.|..++
T Consensus 21 ~~~~ei~~if~~~s~~--~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl 90 (567)
T PLN02228 21 EPPVSIKRLFEAYSRN--GKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYL 90 (567)
T ss_pred CCcHHHHHHHHHhcCC--CccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHh
Confidence 3567899999998743 68999999999987543 35567788888887653 34679999998876
No 145
>PLN02222 phosphoinositide phospholipase C 2
Probab=80.96 E-value=8.4 Score=31.88 Aligned_cols=64 Identities=9% Similarity=0.126 Sum_probs=49.3
Q ss_pred cHHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCC--CCCHHHHHHHHHHhcC-CCCCcccHHHHHHHHH
Q 030933 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNL--DFSLSVVQQMIRMYDF-DRNGTMSFEEFVELNK 68 (169)
Q Consensus 3 ~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~l~~~~d~-~~~~~i~~~eF~~~~~ 68 (169)
...+|..+|..+.. ++.++.++|..+|..... ..+.+.+..++..+.. ...+.++++.|..++.
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~ 89 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLF 89 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhc
Confidence 34688999999864 479999999999997654 3567888888887643 2356799999999863
No 146
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=80.91 E-value=2.3 Score=24.57 Aligned_cols=55 Identities=13% Similarity=0.203 Sum_probs=36.4
Q ss_pred cHHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHHhcCC-------CCCcccHHHHHH
Q 030933 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFD-------RNGTMSFEEFVE 65 (169)
Q Consensus 3 ~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~-------~~~~i~~~eF~~ 65 (169)
..+++...|+.+ .+++++|+..+|+..|.. +++..+...+..- ..|.++|..|+.
T Consensus 4 s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~p-------e~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGKPYVTEEDLRRSLTP-------EQAEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp TCHHHHHHHHHH-CTSSSCEEHHHHHHHS-C-------CCHHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred CHHHHHHHHHHH-HcCCCcccHHHHHHHcCc-------HHHHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 457889999999 667899999999988653 1223333333221 236688888864
No 147
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=78.32 E-value=12 Score=22.50 Aligned_cols=49 Identities=16% Similarity=0.091 Sum_probs=37.5
Q ss_pred CcccHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 030933 20 GSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNK 68 (169)
Q Consensus 20 g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~ 68 (169)
..||..||...-+..+.+++.+++..+...+-.+.-+..+-++=..++.
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llk 61 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLK 61 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 5689999999999999999999999999988665544444444444443
No 148
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.27 E-value=2.2 Score=32.92 Aligned_cols=63 Identities=22% Similarity=0.227 Sum_probs=45.8
Q ss_pred cHHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCCCHHHH-HHHHHHhcCCCCCcccHHHHHH
Q 030933 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVV-QQMIRMYDFDRNGTMSFEEFVE 65 (169)
Q Consensus 3 ~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~-~~l~~~~d~~~~~~i~~~eF~~ 65 (169)
...++++.|+.+|+.++|.|+.+-+..++..++...++.+. ..+-...++..-|.|-..+|..
T Consensus 307 ~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg 370 (449)
T KOG2871|consen 307 PSEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLG 370 (449)
T ss_pred CCHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccccc
Confidence 34678999999999999999999999999988865555443 3333446666666665555544
No 149
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=76.85 E-value=5.3 Score=22.73 Aligned_cols=43 Identities=16% Similarity=0.101 Sum_probs=33.9
Q ss_pred HhhhhCCCCeeeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCC
Q 030933 77 FSDLERGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNK 119 (169)
Q Consensus 77 F~~~D~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~ 119 (169)
.+.+.+.++.++..++.+.|..-|..++.+.+...++.++.++
T Consensus 4 L~~L~~~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 4 LRILAESDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred HHHHHHcCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 3344445678999999999998899999999988888876554
No 150
>PLN02230 phosphoinositide phospholipase C 4
Probab=76.67 E-value=14 Score=30.69 Aligned_cols=65 Identities=14% Similarity=0.194 Sum_probs=48.0
Q ss_pred cHHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCC---CCCHHHHHHHHHHhcCC-------CCCcccHHHHHHHHH
Q 030933 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNL---DFSLSVVQQMIRMYDFD-------RNGTMSFEEFVELNK 68 (169)
Q Consensus 3 ~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~---~~~~~~~~~l~~~~d~~-------~~~~i~~~eF~~~~~ 68 (169)
...++..+|..+..++ +.++.++|..+|..-.. ..+.+.+..++..+... +.+.++.+.|..++.
T Consensus 27 p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~ 101 (598)
T PLN02230 27 PVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLF 101 (598)
T ss_pred CcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHc
Confidence 4578999999996554 89999999999997653 34667777777654221 234699999999763
No 151
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=76.60 E-value=15 Score=22.55 Aligned_cols=50 Identities=10% Similarity=0.066 Sum_probs=36.3
Q ss_pred CCcccHHHHHHHHHcCC--CCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 030933 19 TGSIAAAQLKHAFAVGN--LDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNK 68 (169)
Q Consensus 19 ~g~i~~~e~~~~l~~~~--~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~ 68 (169)
+|.++..|...+-..+. ..++..+...+...+........++.+|...+.
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 64 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIK 64 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 68889888777665322 256778888888887766666788888888664
No 152
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=76.33 E-value=8.9 Score=19.87 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=22.6
Q ss_pred HHHHHHHhhhh-C--CCCeeeHHHHHHHHHH
Q 030933 71 LKVQHAFSDLE-R--GRGYLVPDNVYEALVK 98 (169)
Q Consensus 71 ~~~~~~F~~~D-~--~~g~i~~~el~~~l~~ 98 (169)
..+..+|..|. + ...+++..||+.++..
T Consensus 6 ~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 6 ETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 45778898888 3 4688999999999876
No 153
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=75.52 E-value=12 Score=23.26 Aligned_cols=57 Identities=18% Similarity=0.131 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHH---HHHHHHHHHhhhh-C---CCCeeeHHHHHHHHHHc
Q 030933 41 SVVQQMIRMYDFDRNGTMSFEEFVELNK---FLLKVQHAFSDLE-R---GRGYLVPDNVYEALVKI 99 (169)
Q Consensus 41 ~~~~~l~~~~d~~~~~~i~~~eF~~~~~---~~~~~~~~F~~~D-~---~~g~i~~~el~~~l~~~ 99 (169)
..++.-|..+.. +|.++...|-.-.. ..+-..++|..+. + ....|+.+||+.++..+
T Consensus 30 ~~VE~RFd~La~--dG~L~rs~Fg~CIGM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 30 KEVEKRFDKLAK--DGLLPRSDFGECIGMKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQI 93 (100)
T ss_dssp HHHHHHHHHH-B--TTBEEGGGHHHHHT--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHH
T ss_pred HHHHHHHHHhCc--CCcccHHHHHHhcCCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHh
Confidence 444444554443 45666666655432 1222334444443 1 24667777777777653
No 154
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=73.03 E-value=16 Score=23.04 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=36.0
Q ss_pred HHHhhhh-CCCCeeeHHHHHHHHHHcCCCCCHHHHHHHHHhcC
Q 030933 75 HAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFD 116 (169)
Q Consensus 75 ~~F~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 116 (169)
.+|-... -++-..+..+++.+|..+|..+..+.++.++....
T Consensus 5 aAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~ 47 (112)
T KOG3449|consen 5 AAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK 47 (112)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc
Confidence 4556666 47778999999999999999999999999999874
No 155
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=72.62 E-value=4.2 Score=23.51 Aligned_cols=27 Identities=11% Similarity=0.124 Sum_probs=12.9
Q ss_pred HHHHHHhhhhC-CCCeeeHHHHHHHHHH
Q 030933 72 KVQHAFSDLER-GRGYLVPDNVYEALVK 98 (169)
Q Consensus 72 ~~~~~F~~~D~-~~g~i~~~el~~~l~~ 98 (169)
....+...|++ ..+.|+.+||.+.++.
T Consensus 26 ~~~~l~~~Y~~~k~~kIsR~~fvr~lR~ 53 (70)
T PF12174_consen 26 KMDLLQKHYEEFKKKKISREEFVRKLRQ 53 (70)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 34444444443 4445555555555544
No 156
>PLN02223 phosphoinositide phospholipase C
Probab=70.02 E-value=26 Score=28.81 Aligned_cols=66 Identities=6% Similarity=0.042 Sum_probs=47.8
Q ss_pred ccHHHHHHHHHhhCCCCCCcccHHHHHHHH---HcCC--CCCCHHHHHHHHHHhcCCC--------CCcccHHHHHHHHH
Q 030933 2 ENTAVLREWFDRVDSEKTGSIAAAQLKHAF---AVGN--LDFSLSVVQQMIRMYDFDR--------NGTMSFEEFVELNK 68 (169)
Q Consensus 2 ~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l---~~~~--~~~~~~~~~~l~~~~d~~~--------~~~i~~~eF~~~~~ 68 (169)
+...+++.+|..+. .++|.++...+..+| .... ...+.++++.++..+-... .+.++.+.|..++.
T Consensus 13 ~~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~ 91 (537)
T PLN02223 13 NQPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLF 91 (537)
T ss_pred CCcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhc
Confidence 35678899999995 567999999999998 3322 2566777777777654332 25699999999764
No 157
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=69.25 E-value=18 Score=20.21 Aligned_cols=47 Identities=11% Similarity=0.162 Sum_probs=34.4
Q ss_pred CeeeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 030933 85 GYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQ 136 (169)
Q Consensus 85 g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l~~~~ 136 (169)
-.+|.+|+..++..++...+..++..++...- .+....|..+...+.
T Consensus 8 ~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v~-----~~er~k~~~M~~~L~ 54 (61)
T TIGR01639 8 KKLSKEELNELINSLDEIPNRNDMLIIWNQVH-----GIERDKFVDMQENLK 54 (61)
T ss_pred HHccHHHHHHHHHhhcCCCCHHHHHHHHHHHH-----HHHHHhHHHHHHHHH
Confidence 45888999999999988888999888888763 344455666644433
No 158
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=69.02 E-value=6.7 Score=16.90 Aligned_cols=16 Identities=25% Similarity=0.335 Sum_probs=10.0
Q ss_pred CCCCCCcccHHHHHHH
Q 030933 15 DSEKTGSIAAAQLKHA 30 (169)
Q Consensus 15 D~~~~g~i~~~e~~~~ 30 (169)
|.+++|.|+.-++..+
T Consensus 1 DvN~DG~vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALL 16 (21)
T ss_dssp -TTSSSSSSHHHHHHH
T ss_pred CCCCCCcCCHHHHHHH
Confidence 4567777777766543
No 159
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=68.70 E-value=12 Score=21.11 Aligned_cols=38 Identities=5% Similarity=0.107 Sum_probs=25.7
Q ss_pred hhhh-CCCCeeeHHHHHHHHHHc----------CCCCCHHHHHHHHHhc
Q 030933 78 SDLE-RGRGYLVPDNVYEALVKI----------GFSLDSPAFYTVCESF 115 (169)
Q Consensus 78 ~~~D-~~~g~i~~~el~~~l~~~----------~~~~~~~~~~~~~~~~ 115 (169)
+.|| ..+.+|+.++++++...- |..++...+..++-..
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~g~~~~V~D~ktgeDiT~~iL~QIi~e~ 58 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVREGEDFKVVDAKTGEDITRSILLQIILEE 58 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHCCCeEEEEECCCCcccHHHHHHHHHHHH
Confidence 4678 578899999999888751 4455666555555443
No 160
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.05 E-value=47 Score=24.59 Aligned_cols=65 Identities=15% Similarity=0.088 Sum_probs=42.1
Q ss_pred HHHHHHHHHhh-CCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 030933 4 TAVLREWFDRV-DSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNK 68 (169)
Q Consensus 4 ~~~l~~~F~~~-D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~ 68 (169)
++.+..+|..+ |++-+..|-.+-+..+...+|..+..-...-+--.+....-+..+.++|+.-+.
T Consensus 63 ~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~ 128 (260)
T KOG3077|consen 63 EKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLKGMT 128 (260)
T ss_pred HHHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHHHHH
Confidence 45566677665 455556788888888888888766554333333334455567788889988653
No 161
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=66.86 E-value=33 Score=30.07 Aligned_cols=65 Identities=20% Similarity=0.262 Sum_probs=44.2
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHcC----------CCCCCHHHHHHHHHHhcCCC----CCcccHHHHHHHHH
Q 030933 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVG----------NLDFSLSVVQQMIRMYDFDR----NGTMSFEEFVELNK 68 (169)
Q Consensus 4 ~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~----------~~~~~~~~~~~l~~~~d~~~----~~~i~~~eF~~~~~ 68 (169)
.-+|..+|..+..+...+++..+|..+|+.- -....+..+..++..+.++. .|.++-+-|+.++.
T Consensus 220 R~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~ 298 (1189)
T KOG1265|consen 220 RPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLM 298 (1189)
T ss_pred chhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhh
Confidence 3466777777777777778888888877742 22445677777777776654 46777777777653
No 162
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=64.34 E-value=22 Score=20.15 Aligned_cols=33 Identities=15% Similarity=0.124 Sum_probs=29.1
Q ss_pred CCcccHHHHHHHHHcCCCCCCHHHHHHHHHHhc
Q 030933 19 TGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYD 51 (169)
Q Consensus 19 ~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d 51 (169)
+--|+.+.++..+.+.|..+++..++++.+...
T Consensus 29 NPpine~mir~M~~QMG~kpSekqi~Q~m~~mk 61 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRKPSEKQIKQMMRSMK 61 (64)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 567999999999999999999999999887653
No 163
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=62.03 E-value=56 Score=23.40 Aligned_cols=61 Identities=8% Similarity=0.136 Sum_probs=39.5
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhh-CCCCeeeHHHHHHHHHHcC--C-CCCHHHHHHHHHhcCCCCCC
Q 030933 59 SFEEFVELNKFLLKVQHAFSDLE-RGRGYLVPDNVYEALVKIG--F-SLDSPAFYTVCESFDQNKNG 121 (169)
Q Consensus 59 ~~~eF~~~~~~~~~~~~~F~~~D-~~~g~i~~~el~~~l~~~~--~-~~~~~~~~~~~~~~d~~~~~ 121 (169)
+..+|..-+.. ++..++...- .+.|.|+..|+...+.+.. . .++++++...++.+..-+.|
T Consensus 87 ~~~~f~~ELa~--qi~e~c~~~~~~~GGii~L~dl~~~~nr~R~g~~lISp~Di~~A~~~l~~lg~g 151 (223)
T PF04157_consen 87 GSGDFYYELAV--QIAEVCLATRSKNGGIISLSDLYCRYNRARGGSELISPEDILRACKLLEVLGLG 151 (223)
T ss_dssp CHHHHHHHHHH--HHHHHHHHHCCTTTSEEEHHHHHHHHHHCTTTSST--HHHHHHHHHHHCCCTSS
T ss_pred cchhHHHHHHH--HHHHHHHHHHhcCCCEEEHHHHHHHHHHhcccCCCcCHHHHHHHHHHHHHcCCC
Confidence 55666554432 2344444444 5778999999999999863 2 48899998888887765543
No 164
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=61.19 E-value=40 Score=21.48 Aligned_cols=50 Identities=12% Similarity=0.161 Sum_probs=38.2
Q ss_pred HHhhhh-CCCCeeeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHH
Q 030933 76 AFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFIS 130 (169)
Q Consensus 76 ~F~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~ 130 (169)
+|-..- -++..+|.+++..+|+..|..+....+..+++.+. ..+.++.+.
T Consensus 8 AYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~-----GKdI~ELIa 58 (112)
T PTZ00373 8 AYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE-----GKTPHELIA 58 (112)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc-----CCCHHHHHH
Confidence 344444 46677999999999999999999999999998885 245555554
No 165
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=60.82 E-value=28 Score=19.49 Aligned_cols=46 Identities=13% Similarity=0.184 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhCCCCeeeHHHHHHHHHHcCCCCCHHHHHHH
Q 030933 60 FEEFVELNKFLLKVQHAFSDLERGRGYLVPDNVYEALVKIGFSLDSPAFYTV 111 (169)
Q Consensus 60 ~~eF~~~~~~~~~~~~~F~~~D~~~g~i~~~el~~~l~~~~~~~~~~~~~~~ 111 (169)
.+.|+..+.....++.-++. ..+.+++..+-+..|+.+|.+++...
T Consensus 4 l~~Fl~~~~~d~~L~~~l~~------~~~~e~~~~lA~~~Gf~ft~~el~~~ 49 (64)
T TIGR03798 4 LKAFLEKVKTDPDLREKLKA------AEDPEDRVAIAKEAGFEFTGEDLKEA 49 (64)
T ss_pred HHHHHHHHHcCHHHHHHHHH------cCCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 45566665555555555544 34578899999999999999998763
No 166
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=60.00 E-value=38 Score=20.82 Aligned_cols=89 Identities=12% Similarity=0.061 Sum_probs=57.7
Q ss_pred cHHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHhhhh-
Q 030933 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLE- 81 (169)
Q Consensus 3 ~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~~~~~F~~~D- 81 (169)
+.+.++..|..+. ..|+..+.+.+.+.+| +++.++..+-...- + +.+ ...+++..+-
T Consensus 2 ~~~~l~~~f~~i~----~~V~~~~Wk~laR~LG--Lse~~I~~i~~~~~----~--~~e----------q~~qmL~~W~~ 59 (96)
T cd08315 2 PQETLRRSFDHFI----KEVPFDSWNRLMRQLG--LSENEIDVAKANER----V--TRE----------QLYQMLLTWVN 59 (96)
T ss_pred cHhHHHHHHHHHH----HHCCHHHHHHHHHHcC--CCHHHHHHHHHHCC----C--CHH----------HHHHHHHHHHH
Confidence 4567788887774 4577889999999777 67777776655421 1 111 2233333444
Q ss_pred CCCCeeeHHHHHHHHHHcCCCCCHHHHHHHHH
Q 030933 82 RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCE 113 (169)
Q Consensus 82 ~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~ 113 (169)
+....=|...|.++|..++.....+.++..+.
T Consensus 60 ~~G~~At~~~L~~aL~~~~~~~~Ae~I~~~l~ 91 (96)
T cd08315 60 KTGRKASVNTLLDALEAIGLRLAKESIQDELI 91 (96)
T ss_pred hhCCCcHHHHHHHHHHHcccccHHHHHHHHHH
Confidence 22224457899999999998888887776554
No 167
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=59.99 E-value=5.9 Score=27.92 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=14.7
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHH
Q 030933 108 FYTVCESFDQNKNGRLRLDDFISLC 132 (169)
Q Consensus 108 ~~~~~~~~d~~~~~~i~~~eF~~~l 132 (169)
+..+|..+|.|.|+.|+..||..++
T Consensus 224 ~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 224 TTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred chhhhhcccCCCCCceeHHHhhccc
Confidence 3445556666666666666666554
No 168
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=59.89 E-value=14 Score=29.31 Aligned_cols=80 Identities=16% Similarity=0.161 Sum_probs=53.5
Q ss_pred CCCCcccHHHHHHHHHcCC----CCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH-------HHHHHHHhhhhCCCC
Q 030933 17 EKTGSIAAAQLKHAFAVGN----LDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL-------LKVQHAFSDLERGRG 85 (169)
Q Consensus 17 ~~~g~i~~~e~~~~l~~~~----~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~-------~~~~~~F~~~D~~~g 85 (169)
.|+...+..||..+....+ -.++-+.++.+-+.+|.+.+|.|+.+|=-.+++.. ..-...|.. .+.
T Consensus 40 agds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH~---dD~ 116 (575)
T KOG4403|consen 40 AGDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKFHG---DDK 116 (575)
T ss_pred cCCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhccC---Ccc
Confidence 3455566667765554322 24566888999999999999999988766666533 122224443 345
Q ss_pred eeeHHHHHHHHHHc
Q 030933 86 YLVPDNVYEALVKI 99 (169)
Q Consensus 86 ~i~~~el~~~l~~~ 99 (169)
.||.+++..++..-
T Consensus 117 ~ItVedLWeaW~~S 130 (575)
T KOG4403|consen 117 HITVEDLWEAWKES 130 (575)
T ss_pred ceeHHHHHHHHHhh
Confidence 79999999988764
No 169
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=59.43 E-value=71 Score=23.72 Aligned_cols=96 Identities=8% Similarity=0.096 Sum_probs=53.8
Q ss_pred CCCcccHHHHHHHHHcC--CCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH-----HHH----HHHHhhhhCCCCe
Q 030933 18 KTGSIAAAQLKHAFAVG--NLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL-----LKV----QHAFSDLERGRGY 86 (169)
Q Consensus 18 ~~g~i~~~e~~~~l~~~--~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~-----~~~----~~~F~~~D~~~g~ 86 (169)
-+|.++..|+. ..+.+ ...++.++-..+...+........++.+|+..+... +.+ ...|.. .--+|.
T Consensus 68 ADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~~~~~r~~l~~~lL~~l~~v-A~ADG~ 145 (267)
T PRK09430 68 AKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFRSVCGGRFDLLRMFLEIQIQA-AFADGS 145 (267)
T ss_pred cCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HHhcCC
Confidence 37999999987 33332 134566663334444444444457889998876531 121 222222 224688
Q ss_pred eeHHHHHHHHHHc-CCCCCHHHHHHHHHhc
Q 030933 87 LVPDNVYEALVKI-GFSLDSPAFYTVCESF 115 (169)
Q Consensus 87 i~~~el~~~l~~~-~~~~~~~~~~~~~~~~ 115 (169)
++..|-.-+..-. ...++..++..+...+
T Consensus 146 l~~~E~~~L~~Ia~~Lgis~~df~~~~~~~ 175 (267)
T PRK09430 146 LHPNERQVLYVIAEELGFSRFQFDQLLRMM 175 (267)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9988843333222 2457788877776653
No 170
>PRK00523 hypothetical protein; Provisional
Probab=59.24 E-value=31 Score=20.05 Aligned_cols=32 Identities=16% Similarity=0.154 Sum_probs=28.8
Q ss_pred CCcccHHHHHHHHHcCCCCCCHHHHHHHHHHh
Q 030933 19 TGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMY 50 (169)
Q Consensus 19 ~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 50 (169)
+-.||.+-++..+.+.|..+++..++++.+..
T Consensus 37 NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 37 NPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred CcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 57899999999999999999999999988876
No 171
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.70 E-value=30 Score=19.96 Aligned_cols=33 Identities=15% Similarity=0.075 Sum_probs=28.8
Q ss_pred CCcccHHHHHHHHHcCCCCCCHHHHHHHHHHhc
Q 030933 19 TGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYD 51 (169)
Q Consensus 19 ~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d 51 (169)
+-.|+.+-++..+.+.|..+++..++++++...
T Consensus 36 NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i~ 68 (71)
T COG3763 36 NPPINEEMIRMMMAQMGQKPSEKKINQVMRSII 68 (71)
T ss_pred CCCCCHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 578999999999999999999999999887653
No 172
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.20 E-value=12 Score=29.06 Aligned_cols=61 Identities=13% Similarity=0.300 Sum_probs=43.5
Q ss_pred HHHHHHHhhhhC-CCCeeeHHHHHHHHHHcCCCCCHHH-HHHHHHhcCCCCCCcccHHHHHHH
Q 030933 71 LKVQHAFSDLER-GRGYLVPDNVYEALVKIGFSLDSPA-FYTVCESFDQNKNGRLRLDDFISL 131 (169)
Q Consensus 71 ~~~~~~F~~~D~-~~g~i~~~el~~~l~~~~~~~~~~~-~~~~~~~~d~~~~~~i~~~eF~~~ 131 (169)
+.++++|+.+|+ ++|+|+.+-++.++..+...+++.+ +..+-+..++..-|.|-.++|..-
T Consensus 309 ~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~ 371 (449)
T KOG2871|consen 309 EQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGE 371 (449)
T ss_pred HHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEecccccc
Confidence 689999999994 8899999999999999875555544 333333455555555655555543
No 173
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=56.62 E-value=47 Score=20.86 Aligned_cols=39 Identities=21% Similarity=0.326 Sum_probs=32.6
Q ss_pred eeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHH
Q 030933 87 LVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFIS 130 (169)
Q Consensus 87 i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~ 130 (169)
+|.+++.++|+..|..++...+..+++.+. ..+.++.+.
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLa-----Gk~V~eli~ 55 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALN-----GKNIDEVIS 55 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHc-----CCCHHHHHH
Confidence 999999999999999999999999998874 245555554
No 174
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=56.48 E-value=48 Score=20.89 Aligned_cols=15 Identities=7% Similarity=0.310 Sum_probs=7.2
Q ss_pred CCCeeeHHHHHHHHH
Q 030933 83 GRGYLVPDNVYEALV 97 (169)
Q Consensus 83 ~~g~i~~~el~~~l~ 97 (169)
.+.+||.++++++..
T Consensus 16 tS~YITLedi~~lV~ 30 (107)
T TIGR01848 16 TSSYVTLEDIRDLVR 30 (107)
T ss_pred ccceeeHHHHHHHHH
Confidence 444455555544444
No 175
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=55.76 E-value=20 Score=21.18 Aligned_cols=46 Identities=9% Similarity=0.249 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHHhcCC
Q 030933 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFD 53 (169)
Q Consensus 4 ~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~ 53 (169)
...++++....- ..|+||+.++..+|.. ..+++..+..++..+...
T Consensus 6 ~~~i~~Li~~gK--~~G~lT~~eI~~~L~~--~~~~~e~id~i~~~L~~~ 51 (82)
T PF03979_consen 6 EEAIKKLIEKGK--KKGYLTYDEINDALPE--DDLDPEQIDEIYDTLEDE 51 (82)
T ss_dssp HHHHHHHHHHHH--HHSS-BHHHHHHH-S---S---HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh--hcCcCCHHHHHHHcCc--cCCCHHHHHHHHHHHHHC
Confidence 344555444432 3689999999999983 447778888888877544
No 176
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=55.69 E-value=29 Score=18.12 Aligned_cols=21 Identities=14% Similarity=0.370 Sum_probs=16.7
Q ss_pred eHHHHHHHHHHcCCCCCHHHH
Q 030933 88 VPDNVYEALVKIGFSLDSPAF 108 (169)
Q Consensus 88 ~~~el~~~l~~~~~~~~~~~~ 108 (169)
+.+++..+-+..|+.+|.+++
T Consensus 28 ~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred CHHHHHHHHHHcCCCCCHHHh
Confidence 568888888888888887765
No 177
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=55.30 E-value=38 Score=19.40 Aligned_cols=32 Identities=16% Similarity=0.259 Sum_probs=21.5
Q ss_pred ccHHHHHHHHHcCCCCCCHHHHHHHHHHhcCC
Q 030933 22 IAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFD 53 (169)
Q Consensus 22 i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~ 53 (169)
++..++..++...+..+++.++..+++.-+..
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~ 45 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEK 45 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCc
Confidence 34557777777777777777777777764433
No 178
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=55.22 E-value=20 Score=20.10 Aligned_cols=26 Identities=19% Similarity=0.157 Sum_probs=20.5
Q ss_pred eeeHHHHHHHHHHcCCCCCHHHHHHH
Q 030933 86 YLVPDNVYEALVKIGFSLDSPAFYTV 111 (169)
Q Consensus 86 ~i~~~el~~~l~~~~~~~~~~~~~~~ 111 (169)
.|+.++|..+|+.....++.+++...
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~y 54 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKY 54 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 58889999999988888888887654
No 179
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=55.04 E-value=6.2 Score=27.83 Aligned_cols=23 Identities=13% Similarity=0.423 Sum_probs=12.1
Q ss_pred HHHHHHHhcCCCCCcccHHHHHH
Q 030933 43 VQQMIRMYDFDRNGTMSFEEFVE 65 (169)
Q Consensus 43 ~~~l~~~~d~~~~~~i~~~eF~~ 65 (169)
+.++|..+|.++++.|+.+|+..
T Consensus 224 ~~~f~e~cd~~nd~~ial~ew~~ 246 (259)
T KOG4004|consen 224 TTRFFETCDLDNDKYIALDEWAG 246 (259)
T ss_pred chhhhhcccCCCCCceeHHHhhc
Confidence 34455555555555555555443
No 180
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=54.86 E-value=34 Score=26.30 Aligned_cols=42 Identities=7% Similarity=0.120 Sum_probs=22.9
Q ss_pred CCeeeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 030933 84 RGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISL 131 (169)
Q Consensus 84 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~ 131 (169)
.|.||++|=...++........+.++.+++.++ ||.+||..+
T Consensus 300 ~G~itReeal~~v~~~d~~~~~~~~~~~~~~lg------~t~~ef~~~ 341 (343)
T TIGR03573 300 SGRITREEAIELVKEYDGEFPKEDLEYFLKYLG------ISEEEFWKT 341 (343)
T ss_pred cCCCCHHHHHHHHHHhcccccHHHHHHHHHHhC------CCHHHHHHH
Confidence 466666665555555433344455555665554 555555544
No 181
>PF09415 CENP-X: CENP-S associating Centromere protein X; InterPro: IPR018552 Centromere protein X (CENP-X) is a component of the CENP-S complex. The CENP-S complex is composed of at least of CENP-S and CENP-X and is essential for the stable assembly of the outer kinetchore []. CENP-X is also a DNA-binding component of the Fanconi anemia (FA) core complex involved in DNA damage repair and genome maintenance. The FA complex is composed of CENPS, FANCA, FANCB, FANCC, FANCE, FANCF, FANCG, FANCL/PHF9, FANCM, FAAP24 and CENPX. Interacts with CENPS, FANCM and FAAP24 [, ].; PDB: 4DRB_L 4DRA_H 3V9R_D.
Probab=53.91 E-value=42 Score=19.47 Aligned_cols=58 Identities=14% Similarity=0.168 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCCCCCccc------HHHHHHHHHHHHHHHHHHhhhhCCC-CeeeHHHHHHHHHH
Q 030933 41 SVVQQMIRMYDFDRNGTMS------FEEFVELNKFLLKVQHAFSDLERGR-GYLVPDNVYEALVK 98 (169)
Q Consensus 41 ~~~~~l~~~~d~~~~~~i~------~~eF~~~~~~~~~~~~~F~~~D~~~-g~i~~~el~~~l~~ 98 (169)
+.+.++++..-.+.+.+|+ ..+|+.++-.....+.+...-+.+. +.|..+++.+++..
T Consensus 3 ~li~rll~~~f~~~~tkIs~dal~l~~eyl~iFV~EAv~Ra~~~a~~e~~~~~le~e~LEki~pq 67 (72)
T PF09415_consen 3 ELIARLLHEHFKDDKTKISKDALKLSAEYLRIFVREAVARAAEQAEAEGDEGFLEVEHLEKILPQ 67 (72)
T ss_dssp HHHHHHHCTTSSSTT-EE-CCCHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSEE-HHHHHHHCHC
T ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 4455666644334444444 5666666665555566655555444 45999999987754
No 182
>PHA02335 hypothetical protein
Probab=53.51 E-value=31 Score=21.67 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=20.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHhhhCCCCce
Q 030933 122 RLRLDDFISLCIFLQSARNLFNSFDTAKQG 151 (169)
Q Consensus 122 ~i~~~eF~~~l~~~~~~~~~f~~~d~~~~g 151 (169)
.||+++|..-+.++.-+..+++.+...++-
T Consensus 24 sVt~ddf~~DlkRi~yIkrllKRy~~~~~~ 53 (118)
T PHA02335 24 SVTYDDFEEDLKRFKYIKRLFKRYLNTGEL 53 (118)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhcCCCCh
Confidence 477777777777776666666666655543
No 183
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.63 E-value=38 Score=26.75 Aligned_cols=56 Identities=21% Similarity=0.385 Sum_probs=40.6
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHH
Q 030933 7 LREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVE 65 (169)
Q Consensus 7 l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~ 65 (169)
+.++|..+.+- +|+|+-..-+..+- ...++...+-++|+..|.+.+|.++=+||.-
T Consensus 446 yde~fy~l~p~-~gk~sg~~ak~~mv--~sklpnsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 446 YDEIFYTLSPV-NGKLSGRNAKKEMV--KSKLPNSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred hHhhhhccccc-CceeccchhHHHHH--hccCchhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 34566666554 58888777776665 3456677788888888888888888888864
No 184
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=51.43 E-value=63 Score=27.86 Aligned_cols=44 Identities=11% Similarity=0.069 Sum_probs=24.8
Q ss_pred HHhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCC
Q 030933 11 FDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDR 54 (169)
Q Consensus 11 F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~ 54 (169)
++.||+.++|.|..-.|+-.+-.++....++....+|+....++
T Consensus 476 lNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~~ 519 (966)
T KOG4286|consen 476 LNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASST 519 (966)
T ss_pred HHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCch
Confidence 45556666666666666655555555555555556666554443
No 185
>PRK01844 hypothetical protein; Provisional
Probab=50.58 E-value=46 Score=19.34 Aligned_cols=32 Identities=19% Similarity=0.102 Sum_probs=28.6
Q ss_pred CCcccHHHHHHHHHcCCCCCCHHHHHHHHHHh
Q 030933 19 TGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMY 50 (169)
Q Consensus 19 ~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 50 (169)
+-.||.+-++..+.+.|..+++..++++.+..
T Consensus 36 NPpine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 36 NPPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 56889999999999999999999999988876
No 186
>PHA02105 hypothetical protein
Probab=49.37 E-value=30 Score=19.07 Aligned_cols=51 Identities=16% Similarity=0.202 Sum_probs=31.9
Q ss_pred eeeHHHHHHHHHHc---CCCCCHHHHHHHHHhcCCCC--CCcccHHHHHHHHHHHH
Q 030933 86 YLVPDNVYEALVKI---GFSLDSPAFYTVCESFDQNK--NGRLRLDDFISLCIFLQ 136 (169)
Q Consensus 86 ~i~~~el~~~l~~~---~~~~~~~~~~~~~~~~d~~~--~~~i~~~eF~~~l~~~~ 136 (169)
.++.+|++.++..- ..++..+.++.+-..+.... --.++|+||-.++..++
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~p~ip 59 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIMPFIP 59 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhcccccccc
Confidence 46778888777653 34566666666655554432 23578888887765444
No 187
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=48.50 E-value=69 Score=20.32 Aligned_cols=54 Identities=11% Similarity=0.120 Sum_probs=43.2
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHH
Q 030933 7 LREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVE 65 (169)
Q Consensus 7 l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~ 65 (169)
+...|..++.-++...+..+++.+|...|.....+.+..++..+. |+ +.+|.+.
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~----GK-~i~ElIA 56 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK----GK-DIEELIA 56 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc----CC-CHHHHHH
Confidence 445677778888888999999999999999999999999998873 32 5666654
No 188
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=47.65 E-value=77 Score=20.62 Aligned_cols=24 Identities=13% Similarity=0.109 Sum_probs=12.1
Q ss_pred HHHHhhhh-CCCCeeeHHHHHHHHH
Q 030933 74 QHAFSDLE-RGRGYLVPDNVYEALV 97 (169)
Q Consensus 74 ~~~F~~~D-~~~g~i~~~el~~~l~ 97 (169)
..++..|| .++|.|+.-.++.+|.
T Consensus 100 n~Ll~vyD~~rtG~I~vls~KvaL~ 124 (127)
T PF09068_consen 100 NWLLNVYDSQRTGKIRVLSFKVALI 124 (127)
T ss_dssp HHHHHHH-TT--SEEEHHHHHHHHH
T ss_pred HHHHHHhCCCCCCeeehhHHHHHHH
Confidence 34455566 4666666666665554
No 189
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=46.95 E-value=21 Score=33.37 Aligned_cols=66 Identities=11% Similarity=0.039 Sum_probs=46.7
Q ss_pred ccHHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCCC----HHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 030933 2 ENTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFS----LSVVQQMIRMYDFDRNGTMSFEEFVELNK 68 (169)
Q Consensus 2 ~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~----~~~~~~l~~~~d~~~~~~i~~~eF~~~~~ 68 (169)
++.+...++|..+|++..|+|+..++..+++.+..++. .+. +.+.-.+....++.|++.+-+-.+.
T Consensus 1414 ~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~ 1483 (1592)
T KOG2301|consen 1414 DDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALT 1483 (1592)
T ss_pred ccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHH
Confidence 46788899999999999999999999999997644322 121 2222223344677888888776554
No 190
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=46.93 E-value=84 Score=20.86 Aligned_cols=32 Identities=9% Similarity=-0.036 Sum_probs=15.0
Q ss_pred CeeeHHHHHHHHHHc-CCCCCHHHHHHHHHhcC
Q 030933 85 GYLVPDNVYEALVKI-GFSLDSPAFYTVCESFD 116 (169)
Q Consensus 85 g~i~~~el~~~l~~~-~~~~~~~~~~~~~~~~d 116 (169)
+.|+.+.|+.+|+.. ...++.+-+.-+|..+-
T Consensus 47 ~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~ 79 (138)
T PF14513_consen 47 EPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQ 79 (138)
T ss_dssp TEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS-
T ss_pred CCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 356666666666553 34455555555555554
No 191
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=46.93 E-value=72 Score=20.12 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=30.7
Q ss_pred hhhCCCCeeeHHHHHHHHHHcCCCCCHHHHHHHHHhcC
Q 030933 79 DLERGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFD 116 (169)
Q Consensus 79 ~~D~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 116 (169)
.++.+. .||.+++..+|+..|..+....+..+++.+.
T Consensus 10 L~~~g~-~it~e~I~~IL~AAGveVee~~~k~~v~aL~ 46 (106)
T PRK06402 10 LHSAGK-EINEDNLKKVLEAAGVEVDEARVKALVAALE 46 (106)
T ss_pred HHhcCC-CCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 334444 8999999999999999999998888888864
No 192
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=46.83 E-value=29 Score=16.68 Aligned_cols=19 Identities=26% Similarity=0.270 Sum_probs=14.7
Q ss_pred eeeHHHHHHHHHHcCCCCC
Q 030933 86 YLVPDNVYEALVKIGFSLD 104 (169)
Q Consensus 86 ~i~~~el~~~l~~~~~~~~ 104 (169)
.++..+++..|+..|.+.+
T Consensus 3 ~l~~~~Lk~~l~~~gl~~~ 21 (35)
T smart00513 3 KLKVSELKDELKKRGLSTS 21 (35)
T ss_pred cCcHHHHHHHHHHcCCCCC
Confidence 5678889999998887643
No 193
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=46.04 E-value=53 Score=21.30 Aligned_cols=46 Identities=11% Similarity=0.156 Sum_probs=34.1
Q ss_pred HHHHHHHhhhhCCCCeeeHHHHHHHHHHc-CCCCCHHHHHHHHHhcCCC
Q 030933 71 LKVQHAFSDLERGRGYLVPDNVYEALVKI-GFSLDSPAFYTVCESFDQN 118 (169)
Q Consensus 71 ~~~~~~F~~~D~~~g~i~~~el~~~l~~~-~~~~~~~~~~~~~~~~d~~ 118 (169)
..+..+|+.|-+ +.|+.+.+..++... |..+|...++.++.++-.|
T Consensus 37 ~Kl~~Il~mFl~--~eid~e~~y~l~~~~d~~~LT~~Qi~Yl~~~~~~n 83 (122)
T PF06648_consen 37 DKLIKILKMFLN--DEIDVEDMYNLFGAVDGLKLTRSQIDYLYNRVYNN 83 (122)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHhcccHhhcCHHHHHHHHHHHHcc
Confidence 456677777763 578889999888877 5788888888877776433
No 194
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=45.90 E-value=76 Score=20.09 Aligned_cols=50 Identities=16% Similarity=0.264 Sum_probs=37.8
Q ss_pred HHhhhh-CCCCeeeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHH
Q 030933 76 AFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFIS 130 (169)
Q Consensus 76 ~F~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~ 130 (169)
+|-... .++..+|.+++..+|+..|..+....+..+++.+. ..+.++.+.
T Consensus 6 AylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~-----GKdi~eLIa 56 (109)
T cd05833 6 AYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELE-----GKDVEELIA 56 (109)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc-----CCCHHHHHH
Confidence 344445 46678999999999999999999999988888874 244555544
No 195
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=45.28 E-value=91 Score=20.80 Aligned_cols=40 Identities=10% Similarity=0.283 Sum_probs=22.7
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHh----------cCCCCCCcccHHHHHHH
Q 030933 92 VYEALVKIGFSLDSPAFYTVCES----------FDQNKNGRLRLDDFISL 131 (169)
Q Consensus 92 l~~~l~~~~~~~~~~~~~~~~~~----------~d~~~~~~i~~~eF~~~ 131 (169)
+.+-..++|+.++++++..++.. +-.+..|..+...+.++
T Consensus 95 l~~e~eklGi~Vs~~El~d~l~~g~~p~~~~~~~f~~~tG~Fd~~~l~~f 144 (145)
T PF13623_consen 95 LEQEFEKLGITVSDDELQDMLNQGTNPMLQQNPFFNPQTGQFDRAKLKQF 144 (145)
T ss_pred HHHHHHHhCCccCHHHHHHHHhcCCCchhhhccccCcccCCcCHHHHHhh
Confidence 34444566778888877777621 12245566666555443
No 196
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=44.97 E-value=81 Score=20.12 Aligned_cols=55 Identities=9% Similarity=0.079 Sum_probs=40.9
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHH
Q 030933 6 VLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVE 65 (169)
Q Consensus 6 ~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~ 65 (169)
++...|..+.--++..+|..++..+|...|.......+..+++.+. ..+.++.+.
T Consensus 4 kyvaAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~-----GKdI~ELIa 58 (112)
T PTZ00373 4 KYVAAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE-----GKTPHELIA 58 (112)
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc-----CCCHHHHHH
Confidence 3444555666666778999999999999999888888888888873 245666654
No 197
>PF12995 DUF3879: Domain of unknown function, E. rectale Gene description (DUF3879); InterPro: IPR024540 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=44.95 E-value=81 Score=21.64 Aligned_cols=55 Identities=18% Similarity=0.338 Sum_probs=35.4
Q ss_pred eeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHhhhCCCC
Q 030933 87 LVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQSARNLFNSFDTAK 149 (169)
Q Consensus 87 i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l~~~~~~~~~f~~~d~~~ 149 (169)
|...+.+.-|+..|++........++..+-.++.|.| |..|. .+..+-++||+++
T Consensus 2 ~ns~~~~~~lka~gi~tnskqyka~~~~mm~~~~~~~-y~~~~-------~iknlm~~yd~dg 56 (186)
T PF12995_consen 2 INSSSVQEQLKAAGINTNSKQYKAVMSEMMSAGEGAM-YTNIQ-------GIKNLMSQYDKDG 56 (186)
T ss_pred CChHHHHHHHHhcCCCcChHHHHHHHHHHhcCCCCce-eehHH-------HHHHHHHhcCCCC
Confidence 4456777888888888777777777777776776643 33332 2455556666544
No 198
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=43.26 E-value=62 Score=22.61 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=21.0
Q ss_pred CCCCeeeHHHHHHHHHHcCCCCCHHHHHHHHHhcC
Q 030933 82 RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFD 116 (169)
Q Consensus 82 ~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 116 (169)
+.+|+++.+++.+.+..-+..++.+++..++..-+
T Consensus 28 d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 28 DPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDD 62 (186)
T ss_dssp -TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-S
T ss_pred CCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCC
Confidence 45788888888777777666677888877777643
No 199
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=43.10 E-value=77 Score=19.34 Aligned_cols=46 Identities=17% Similarity=0.238 Sum_probs=25.4
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhcCC-----CCCCcccHHHHHHHHHHH
Q 030933 90 DNVYEALVKIGFSLDSPAFYTVCESFDQ-----NKNGRLRLDDFISLCIFL 135 (169)
Q Consensus 90 ~el~~~l~~~~~~~~~~~~~~~~~~~d~-----~~~~~i~~~eF~~~l~~~ 135 (169)
..++.+|+.-|+.++.+++..++...+. -..|.|+.+.+...-..+
T Consensus 12 ~~Lk~lLk~rGi~v~~~~L~~f~~~i~~~~PWF~~eG~l~~~~W~kvG~~l 62 (90)
T PF02337_consen 12 SILKHLLKERGIRVKKKDLINFLSFIDKVCPWFPEEGTLDLDNWKKVGEEL 62 (90)
T ss_dssp HHHHHHHHCCT----HHHHHHHHHHHHHHTT-SS--SS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCeeecHHHHHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHH
Confidence 3455666666888888888777776443 245678888887764433
No 200
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=41.70 E-value=28 Score=16.87 Aligned_cols=19 Identities=26% Similarity=0.267 Sum_probs=13.8
Q ss_pred eeeHHHHHHHHHHcCCCCC
Q 030933 86 YLVPDNVYEALVKIGFSLD 104 (169)
Q Consensus 86 ~i~~~el~~~l~~~~~~~~ 104 (169)
.++..|++..|+..|.+.+
T Consensus 3 ~l~v~eLk~~l~~~gL~~~ 21 (35)
T PF02037_consen 3 KLTVAELKEELKERGLSTS 21 (35)
T ss_dssp TSHHHHHHHHHHHTTS-ST
T ss_pred cCcHHHHHHHHHHCCCCCC
Confidence 4677889999998887643
No 201
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=41.27 E-value=54 Score=19.06 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=8.9
Q ss_pred CCCeeeHHHHHHHHHH
Q 030933 83 GRGYLVPDNVYEALVK 98 (169)
Q Consensus 83 ~~g~i~~~el~~~l~~ 98 (169)
..|.++.+||.+++..
T Consensus 27 ~~Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 27 ASGKLRGEEINSLLEA 42 (75)
T ss_pred HcCcccHHHHHHHHHH
Confidence 3456666666555543
No 202
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=41.07 E-value=44 Score=15.95 Aligned_cols=21 Identities=5% Similarity=0.320 Sum_probs=14.0
Q ss_pred CCcccHHHHHHHHHHHHHHHH
Q 030933 120 NGRLRLDDFISLCIFLQSARN 140 (169)
Q Consensus 120 ~~~i~~~eF~~~l~~~~~~~~ 140 (169)
.|.|++++++.+..+...+.+
T Consensus 2 ~~~i~~~~~~d~a~rv~~f~~ 22 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVNNFYE 22 (33)
T ss_pred CceecHHHHHHHHHHHHHHHH
Confidence 467888888887666555433
No 203
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=40.67 E-value=98 Score=20.82 Aligned_cols=42 Identities=14% Similarity=0.229 Sum_probs=31.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHhhhh-CCCCeeeHHHHHHHHHHc
Q 030933 58 MSFEEFVELNKFLLKVQHAFSDLE-RGRGYLVPDNVYEALVKI 99 (169)
Q Consensus 58 i~~~eF~~~~~~~~~~~~~F~~~D-~~~g~i~~~el~~~l~~~ 99 (169)
-...-+......++.+..-....| ++.++||.++++.+.-.+
T Consensus 56 ~~l~gW~q~~~~Lq~L~~rL~~le~~rg~Y~TiSeLKT~vy~i 98 (148)
T PF12486_consen 56 PQLDGWHQGMTQLQQLADRLNQLEEQRGKYMTISELKTAVYQI 98 (148)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHhcCCceeHHHHHHHHHHH
Confidence 345556666677777888888888 467789999999888764
No 204
>KOG2525 consensus Folylpolyglutamate synthase [Coenzyme transport and metabolism]
Probab=40.56 E-value=47 Score=26.97 Aligned_cols=45 Identities=13% Similarity=0.118 Sum_probs=26.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHhh---hhCCCCeeeHHHHHHHHHHcCCC
Q 030933 58 MSFEEFVELNKFLLKVQHAFSD---LERGRGYLVPDNVYEALVKIGFS 102 (169)
Q Consensus 58 i~~~eF~~~~~~~~~~~~~F~~---~D~~~g~i~~~el~~~l~~~~~~ 102 (169)
..|++++.+++.++.-...... -++..+.++...+.+.|+.+|.+
T Consensus 19 ~~~~~~v~~lnsLqsn~~~i~~~~~~~~~~~~~~l~~m~~~L~~lg~p 66 (496)
T KOG2525|consen 19 KTYEDAVRYLNSLQSNAALIEKLRRQDDNPQGLTLPRMRKLLERLGNP 66 (496)
T ss_pred hhHHHHHHHHHHHHhHHHhhhhhhhccCCccccCHHHHHHHHHHhCCh
Confidence 3466666666655443333333 34456667777777777777766
No 205
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=39.16 E-value=89 Score=21.73 Aligned_cols=32 Identities=28% Similarity=0.241 Sum_probs=18.6
Q ss_pred CCCeeeHHHHHHHHHHcCCCCCHHHHHHHHHh
Q 030933 83 GRGYLVPDNVYEALVKIGFSLDSPAFYTVCES 114 (169)
Q Consensus 83 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~ 114 (169)
.+|++..+++.+.++.-+..++.+++..+...
T Consensus 30 ~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~ 61 (179)
T PRK00819 30 EEGWVDIDALIEALAKAYKWVTRELLEAVVES 61 (179)
T ss_pred CCCCEEHHHHHHHHHHccCCCCHHHHHHHHHc
Confidence 45666666666666543444566666655554
No 206
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=38.80 E-value=1e+02 Score=19.64 Aligned_cols=35 Identities=11% Similarity=0.169 Sum_probs=30.4
Q ss_pred CCCCeeeHHHHHHHHHHcCCCCCHHHHHHHHHhcC
Q 030933 82 RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFD 116 (169)
Q Consensus 82 ~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 116 (169)
.++..+|.+++.++|+..|..+....+..+++.+.
T Consensus 13 ~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~ 47 (113)
T PLN00138 13 GGNTCPSAEDLKDILGSVGADADDDRIELLLSEVK 47 (113)
T ss_pred cCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc
Confidence 45667999999999999999999888888888874
No 207
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=38.64 E-value=96 Score=19.16 Aligned_cols=78 Identities=8% Similarity=0.022 Sum_probs=46.0
Q ss_pred CcccHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHhhhh-CCCCeeeHHHHHHHHHH
Q 030933 20 GSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLE-RGRGYLVPDNVYEALVK 98 (169)
Q Consensus 20 g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~~~~~F~~~D-~~~g~i~~~el~~~l~~ 98 (169)
..|+..+++.+.+.+| +++.++..+-.... ++ ..++- .++++.+- .....=+...+.++|+.
T Consensus 16 ~~~~~~~wK~faR~lg--lse~~Id~I~~~~~--~d---~~Eq~----------~qmL~~W~~~~G~~a~~~~Li~aLr~ 78 (97)
T cd08316 16 DVMTLKDVKKFVRKSG--LSEPKIDEIKLDNP--QD---TAEQK----------VQLLRAWYQSHGKTGAYRTLIKTLRK 78 (97)
T ss_pred HHcCHHHHHHHHHHcC--CCHHHHHHHHHcCC--CC---hHHHH----------HHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4567778888888766 66666666554322 11 12332 23333333 22222235888899999
Q ss_pred cCCCCCHHHHHHHHHh
Q 030933 99 IGFSLDSPAFYTVCES 114 (169)
Q Consensus 99 ~~~~~~~~~~~~~~~~ 114 (169)
++.....+.++.++..
T Consensus 79 ~~l~~~Ad~I~~~l~~ 94 (97)
T cd08316 79 AKLCTKADKIQDIIEA 94 (97)
T ss_pred ccchhHHHHHHHHHHh
Confidence 9988888888777654
No 208
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=38.24 E-value=1e+02 Score=19.48 Aligned_cols=53 Identities=13% Similarity=0.086 Sum_probs=38.7
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHH
Q 030933 8 REWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVE 65 (169)
Q Consensus 8 ~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~ 65 (169)
...|..+.--++..+|.+++..+|...|.......+..+++.+.. .++.+.+.
T Consensus 4 vaAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~G-----Kdi~eLIa 56 (109)
T cd05833 4 VAAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELEG-----KDVEELIA 56 (109)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 344555555677789999999999999988888888888887731 44555554
No 209
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=37.99 E-value=74 Score=26.97 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=13.8
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 030933 106 PAFYTVCESFDQNKNGRLRLDDFISLCI 133 (169)
Q Consensus 106 ~~~~~~~~~~d~~~~~~i~~~eF~~~l~ 133 (169)
+....++...+.+..+.+.++++...+.
T Consensus 61 ~~~~~~~~~~~~~~~~y~~~~~~~~ll~ 88 (646)
T KOG0039|consen 61 EYAALIMEELDPDHKGYITNEDLEILLL 88 (646)
T ss_pred HHHHHhhhhccccccceeeecchhHHHH
Confidence 3344445555555555555555544443
No 210
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins. RNA circularization proteins are capable of circularizing RNA molecules in an ATP-dependent reaction. RNA circularization may protect RNA from exonuclease activity. This model comprises the adenylation domain, the minimal catalytic unit that is common to all members of the ATP-dependent DNA ligase family, and the carboxy-terminal extension of RNA circularization protein that serves as a dimerization module. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation domain binds ATP and contains many active site residues.
Probab=37.63 E-value=58 Score=25.19 Aligned_cols=43 Identities=14% Similarity=0.219 Sum_probs=26.9
Q ss_pred HHhhCCCCCCcccHHHHHHHHHcCCCCCC----------HHHHHHHHHHhcCC
Q 030933 11 FDRVDSEKTGSIAAAQLKHAFAVGNLDFS----------LSVVQQMIRMYDFD 53 (169)
Q Consensus 11 F~~~D~~~~g~i~~~e~~~~l~~~~~~~~----------~~~~~~l~~~~d~~ 53 (169)
|...+.++.+.++..+...++..++.+.. ..++..++......
T Consensus 131 FDI~~~~~~~~lp~~eR~~lLe~lg~~~v~~~~~~~~~d~~~l~~~l~~~~~~ 183 (342)
T cd07894 131 FDIRKKNTGRPLPVEERRELLEKYGLPTVRLFGEFTADEIEELKEIIRELDKE 183 (342)
T ss_pred EeeEEcCCCCCCCHHHHHHHHHhcCCCCcceEEEEecCCHHHHHHHHHHHHHC
Confidence 33344444577889999999998765322 25566666665443
No 211
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=37.28 E-value=86 Score=25.58 Aligned_cols=72 Identities=8% Similarity=-0.005 Sum_probs=44.5
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCC-cccHHHHHHHHHH----HHHHHHHHhhhh
Q 030933 8 REWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNG-TMSFEEFVELNKF----LLKVQHAFSDLE 81 (169)
Q Consensus 8 ~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~-~i~~~eF~~~~~~----~~~~~~~F~~~D 81 (169)
...|...=+.+...++..++..++.+++......+--+.|+. +.+.. .+.|..++..... ...+.++|..++
T Consensus 488 t~~f~h~lkk~~~~lsdsd~~a~l~slgl~~dk~egi~~F~~--~a~s~~gv~yl~v~~~i~sel~D~d~v~~~~~~f~ 564 (612)
T COG5069 488 TALFNHVLKKDGCGLSDSDLCAWLGSLGLKGDKEEGIRSFGD--PAGSVSGVFYLDVLKGIHSELVDYDLVTRGFTEFD 564 (612)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhccccCCccceeeccC--CccccccchHHHHHHHHhhhhcChhhhhhhHHHHH
Confidence 345666555556678999999999988876554444444443 22222 4667777775543 245666666665
No 212
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=37.24 E-value=1.1e+02 Score=24.48 Aligned_cols=46 Identities=13% Similarity=0.193 Sum_probs=34.0
Q ss_pred CCCCcccHHHHHHHHHH----------HHHHHHHHhhhh-CCCCeeeHHHHHHHHHH
Q 030933 53 DRNGTMSFEEFVELNKF----------LLKVQHAFSDLE-RGRGYLVPDNVYEALVK 98 (169)
Q Consensus 53 ~~~~~i~~~eF~~~~~~----------~~~~~~~F~~~D-~~~g~i~~~el~~~l~~ 98 (169)
.++...+-.||+..... .+.++.+-+..| +.+|.|..+|--.+++.
T Consensus 40 agds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrE 96 (575)
T KOG4403|consen 40 AGDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLRE 96 (575)
T ss_pred cCCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHH
Confidence 44556677777765422 256788888899 69999999998888875
No 213
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=36.88 E-value=1.3e+02 Score=20.22 Aligned_cols=40 Identities=15% Similarity=0.209 Sum_probs=28.2
Q ss_pred cHHHHHHHHHhhCCCCCCcccHHHHHHHHHc----CCCCCCHHH
Q 030933 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAV----GNLDFSLSV 42 (169)
Q Consensus 3 ~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~----~~~~~~~~~ 42 (169)
+...+.+-.+..|..+.++||.+|++.+.-. ++..+|.++
T Consensus 67 ~Lq~L~~rL~~le~~rg~Y~TiSeLKT~vy~i~q~l~~~~P~Ee 110 (148)
T PF12486_consen 67 QLQQLADRLNQLEEQRGKYMTISELKTAVYQIQQSLNQSVPLEE 110 (148)
T ss_pred HHHHHHHHHHHHHHhcCCceeHHHHHHHHHHHHHHhcCCCCHHH
Confidence 4556666777788888888999999987763 344444443
No 214
>TIGR03685 L21P_arch 50S ribosomal protein L12P. This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome.
Probab=36.31 E-value=1.1e+02 Score=19.21 Aligned_cols=37 Identities=14% Similarity=0.246 Sum_probs=30.6
Q ss_pred hhhCCCCeeeHHHHHHHHHHcCCCCCHHHHHHHHHhcC
Q 030933 79 DLERGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFD 116 (169)
Q Consensus 79 ~~D~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 116 (169)
.++.+. .+|.+.+..+|+..|..+....+..+...+.
T Consensus 10 l~~~g~-~iT~e~I~~IL~AAGv~ve~~~~~~la~~L~ 46 (105)
T TIGR03685 10 LHSAGK-EINEENLKAVLEAAGVEVDEARVKALVAALE 46 (105)
T ss_pred HHhcCC-CCCHHHHHHHHHHhCCcccHHHHHHHHHHHc
Confidence 344444 8999999999999999998888888888874
No 215
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=36.11 E-value=2.3e+02 Score=23.27 Aligned_cols=60 Identities=17% Similarity=0.150 Sum_probs=43.5
Q ss_pred HHHHhhhh-CCCCeeeHHHHHHHHHHcCCCCCHHHHHHHHHh---cCC-----CCCCcccHHHHHHHHH
Q 030933 74 QHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCES---FDQ-----NKNGRLRLDDFISLCI 133 (169)
Q Consensus 74 ~~~F~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~---~d~-----~~~~~i~~~eF~~~l~ 133 (169)
..+|..|- .+++.++.--|..+|+..|+.-++..+..++.. ++. ...+.++.+-|.+++.
T Consensus 89 DLLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~ 157 (622)
T KOG0506|consen 89 DLLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIF 157 (622)
T ss_pred hhhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhc
Confidence 45677777 467999999999999999988777666665543 332 2345688888888763
No 216
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=35.85 E-value=1.7e+02 Score=23.96 Aligned_cols=58 Identities=14% Similarity=0.112 Sum_probs=40.6
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHH---HHhcC-----CCCCcccHHHHHHHH
Q 030933 10 WFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMI---RMYDF-----DRNGTMSFEEFVELN 67 (169)
Q Consensus 10 ~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~---~~~d~-----~~~~~i~~~eF~~~~ 67 (169)
+|..+...+++.++.-.|..+|++.|+.-+..-++.++ +.++. .....++-+.|.+..
T Consensus 91 LFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI 156 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCI 156 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhh
Confidence 56666655689999999999999999866655554444 33442 234578888888854
No 217
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=35.66 E-value=44 Score=21.60 Aligned_cols=81 Identities=17% Similarity=0.173 Sum_probs=38.8
Q ss_pred CCCeeeHHHHHHHHHHc--CCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHH-------HHHHHHHHhhhCCCCceeE
Q 030933 83 GRGYLVPDNVYEALVKI--GFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIF-------LQSARNLFNSFDTAKQGRI 153 (169)
Q Consensus 83 ~~g~i~~~el~~~l~~~--~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l~~-------~~~~~~~f~~~d~~~~g~i 153 (169)
-+|.++.+|...+..-+ ...++......+...+..-.....++.+++..+.. ..-+..++.... .+|.+
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~ll~~l~~ia~--ADG~~ 113 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLSPEEREDLLRMLIAIAY--ADGEI 113 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--HHHHHHHHHHHHHHCT--CTTC-
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhchHHHHHHHHHHHHHHh--cCCCC
Confidence 45777777766555544 23345555555555554433335666666655532 111223333333 34555
Q ss_pred EeehhHHHHHhh
Q 030933 154 TLDLNQFIFCTA 165 (169)
Q Consensus 154 ~~~~~~~~~~~~ 165 (169)
.-...+++..+.
T Consensus 114 ~~~E~~~l~~ia 125 (140)
T PF05099_consen 114 SPEEQEFLRRIA 125 (140)
T ss_dssp SCCHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 556666665543
No 218
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=35.22 E-value=71 Score=24.63 Aligned_cols=84 Identities=14% Similarity=0.199 Sum_probs=45.5
Q ss_pred CCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHH-HHHHHHHHHhhhh-C---CCCeeeH
Q 030933 15 DSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNK-FLLKVQHAFSDLE-R---GRGYLVP 89 (169)
Q Consensus 15 D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~-~~~~~~~~F~~~D-~---~~g~i~~ 89 (169)
|.|+...+--++|......+.......-+.-+.+.|-..=+|.|=|+|..+-++ ....+.++|.... + +-|.|+
T Consensus 57 DyNr~HF~R~~ef~~~~d~l~~e~r~~FidFLerSctaEFSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlN- 135 (355)
T PRK13654 57 DYNRHHFVRDEEFDQDWDHLDPETRKEFIDFLERSCTAEFSGFLLYKELSRRLKDRNPLLAELFQLMARDEARHAGFLN- 135 (355)
T ss_pred CcccccccCChhhhhchhhCCHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhccccCcHHHHHHHHHhhhHHHHhhhHH-
Confidence 444444555555555333221111112233444445455567777777766554 3457888888775 3 567776
Q ss_pred HHHHHHHHHcCCCC
Q 030933 90 DNVYEALVKIGFSL 103 (169)
Q Consensus 90 ~el~~~l~~~~~~~ 103 (169)
++|+.+|+.+
T Consensus 136 ----kam~df~l~l 145 (355)
T PRK13654 136 ----KAMKDFGLSL 145 (355)
T ss_pred ----HHHHHcCccc
Confidence 5677766544
No 219
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.59 E-value=75 Score=20.33 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=22.0
Q ss_pred eeHHHHHHHHHHcCCCCCHHHHHHHHHhc
Q 030933 87 LVPDNVYEALVKIGFSLDSPAFYTVCESF 115 (169)
Q Consensus 87 i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 115 (169)
-|.+|++.++..-+..+++++++.++...
T Consensus 80 ~t~~ElRsIla~e~~~~s~E~l~~Ildiv 108 (114)
T COG1460 80 RTPDELRSILAKERVMLSDEELDKILDIV 108 (114)
T ss_pred CCHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 35678888888888888888887776543
No 220
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=34.01 E-value=86 Score=19.86 Aligned_cols=27 Identities=11% Similarity=0.225 Sum_probs=15.9
Q ss_pred eHHHHHHHHHHcCCCCCHHHHHHHHHh
Q 030933 88 VPDNVYEALVKIGFSLDSPAFYTVCES 114 (169)
Q Consensus 88 ~~~el~~~l~~~~~~~~~~~~~~~~~~ 114 (169)
+.+|++.++......+++++++.++..
T Consensus 80 ~~dElrai~~~~~~~~~~e~l~~ILd~ 106 (112)
T PRK14981 80 TRDELRAIFAKERYTLSPEELDEILDI 106 (112)
T ss_pred CHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 456666666666555666666665543
No 221
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=33.87 E-value=96 Score=17.77 Aligned_cols=48 Identities=23% Similarity=0.283 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhhhC-CCCeeeHHHHHHHHHHc----CCCCCHHHHHHHHHhc
Q 030933 68 KFLLKVQHAFSDLER-GRGYLVPDNVYEALVKI----GFSLDSPAFYTVCESF 115 (169)
Q Consensus 68 ~~~~~~~~~F~~~D~-~~g~i~~~el~~~l~~~----~~~~~~~~~~~~~~~~ 115 (169)
.....+..+....+. ..--+-..+++.++..+ |...+++.++.+|..|
T Consensus 20 ~a~~~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 20 QALEHLEDALEALENGLPLDLVAEDLREALESLGEITGEVVTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS--HHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhh
Confidence 344555666665553 23345556777777765 6677888888888776
No 222
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=33.75 E-value=1.1e+02 Score=19.23 Aligned_cols=40 Identities=18% Similarity=0.288 Sum_probs=24.9
Q ss_pred HHHhhhhCCCCeeeHHHHHHHHHHcCCCCCHHHHHHHHHh
Q 030933 75 HAFSDLERGRGYLVPDNVYEALVKIGFSLDSPAFYTVCES 114 (169)
Q Consensus 75 ~~F~~~D~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~ 114 (169)
.++..+....+.+|.+++.+.++.-+..++...+-..+..
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~ 51 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDL 51 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHH
Confidence 3344444334589999999999887777777665444443
No 223
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=33.43 E-value=77 Score=16.54 Aligned_cols=33 Identities=15% Similarity=0.304 Sum_probs=21.3
Q ss_pred CCCeee-HHHHHHHHHHcCCCCCHHHHHHHHHhc
Q 030933 83 GRGYLV-PDNVYEALVKIGFSLDSPAFYTVCESF 115 (169)
Q Consensus 83 ~~g~i~-~~el~~~l~~~~~~~~~~~~~~~~~~~ 115 (169)
..|.|+ ..++-..|...|+-++++.++.+++.+
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~~ 47 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILRRA 47 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHHHc
Confidence 456675 344444455567888888888777654
No 224
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=33.00 E-value=2e+02 Score=24.54 Aligned_cols=71 Identities=23% Similarity=0.241 Sum_probs=38.5
Q ss_pred ccHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH--------------HHHHHHHhhhh-CCCCe
Q 030933 22 IAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL--------------LKVQHAFSDLE-RGRGY 86 (169)
Q Consensus 22 i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~--------------~~~~~~F~~~D-~~~g~ 86 (169)
++.+|+. ......++.++.++..+|. .+|.++-+++..+.... +....++...| ++.|+
T Consensus 4 ~~~~~~~-----~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 77 (646)
T KOG0039|consen 4 ISFQELK-----ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGY 77 (646)
T ss_pred cchhhhc-----ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccce
Confidence 5555655 2223344555666666665 55666666666544211 23334556666 45667
Q ss_pred eeHHHHHHHHHH
Q 030933 87 LVPDNVYEALVK 98 (169)
Q Consensus 87 i~~~el~~~l~~ 98 (169)
+..+++..++..
T Consensus 78 ~~~~~~~~ll~~ 89 (646)
T KOG0039|consen 78 ITNEDLEILLLQ 89 (646)
T ss_pred eeecchhHHHHh
Confidence 776666666653
No 225
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=32.98 E-value=95 Score=18.70 Aligned_cols=29 Identities=7% Similarity=0.044 Sum_probs=21.1
Q ss_pred eeHHHHHHHHHHcCCCCCHHHHHHHHHhc
Q 030933 87 LVPDNVYEALVKIGFSLDSPAFYTVCESF 115 (169)
Q Consensus 87 i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 115 (169)
|+.+++.++-+-..+.+++++++.+...+
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~~~~l 29 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESFAGDL 29 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 46677777777777888888877766654
No 226
>PRK03968 DNA primase large subunit; Validated
Probab=32.72 E-value=1.3e+02 Score=23.57 Aligned_cols=46 Identities=9% Similarity=0.109 Sum_probs=29.9
Q ss_pred CCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 030933 17 EKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNK 68 (169)
Q Consensus 17 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~ 68 (169)
...+.++..+...+-+..+..+++++..++... ..+.+.+|+.++.
T Consensus 117 ~~~~e~p~~d~~~l~~~~~~el~~e~~~~~~~~------y~i~~~df~~l~g 162 (399)
T PRK03968 117 VNAIEIPEKDRKILERVRGRELPPEELEDLLPE------YKIKWKDLLDLIG 162 (399)
T ss_pred cccccccchhhhhhhhhcccccCHHHHHHHhhh------ccccHHHHHHhcC
Confidence 445666777777777776777777777666544 3466777766543
No 227
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=32.13 E-value=81 Score=22.12 Aligned_cols=45 Identities=13% Similarity=0.142 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhhhh-CCCCeeeHHHHHHHHHHcCCCCCHHHHHH
Q 030933 66 LNKFLLKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYT 110 (169)
Q Consensus 66 ~~~~~~~~~~~F~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~ 110 (169)
++++.+..+++|..|| +.=-.++.+++.+++...|+--....+..
T Consensus 50 VL~KRe~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A 95 (188)
T COG2818 50 VLKKREAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKA 95 (188)
T ss_pred HHHhHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHH
Confidence 4566788999999999 67778899999999998876444333333
No 228
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=31.87 E-value=96 Score=21.65 Aligned_cols=36 Identities=14% Similarity=0.207 Sum_probs=21.9
Q ss_pred CCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHHhc
Q 030933 16 SEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYD 51 (169)
Q Consensus 16 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d 51 (169)
.+.+|+++.+++...+..-+..++.+++.++....+
T Consensus 27 ~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 27 MDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDD 62 (186)
T ss_dssp --TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-S
T ss_pred cCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCC
Confidence 356788999998888887666677888888777643
No 229
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=31.78 E-value=71 Score=18.93 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=13.4
Q ss_pred HHHHHHHHcCCCCCHHHHHHHH
Q 030933 91 NVYEALVKIGFSLDSPAFYTVC 112 (169)
Q Consensus 91 el~~~l~~~~~~~~~~~~~~~~ 112 (169)
|+-.+|+++|.++++++..-+-
T Consensus 21 EIL~ALrkLge~Ls~eE~~FL~ 42 (78)
T PF06384_consen 21 EILTALRKLGEKLSPEEEAFLE 42 (78)
T ss_dssp HHHHHHHHTT----HHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHH
Confidence 5777889999999998875443
No 230
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.73 E-value=1.3e+02 Score=24.00 Aligned_cols=58 Identities=22% Similarity=0.261 Sum_probs=46.4
Q ss_pred HHHHHHhhhhCCCCeeeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 030933 72 KVQHAFSDLERGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISL 131 (169)
Q Consensus 72 ~~~~~F~~~D~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~ 131 (169)
...++|..+..-+|+||-..-+.-+.. -.+....+-.+++..|.+.||-++-+||.-.
T Consensus 445 ~yde~fy~l~p~~gk~sg~~ak~~mv~--sklpnsvlgkiwklad~d~dg~ld~eefala 502 (532)
T KOG1954|consen 445 TYDEIFYTLSPVNGKLSGRNAKKEMVK--SKLPNSVLGKIWKLADIDKDGMLDDEEFALA 502 (532)
T ss_pred chHhhhhcccccCceeccchhHHHHHh--ccCchhHHHhhhhhhcCCcccCcCHHHHHHH
Confidence 466788877777899988776655543 4566788999999999999999999999754
No 231
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=31.62 E-value=1.2e+02 Score=18.36 Aligned_cols=16 Identities=31% Similarity=0.302 Sum_probs=11.7
Q ss_pred CCcccHHHHHHHHHcC
Q 030933 19 TGSIAAAQLKHAFAVG 34 (169)
Q Consensus 19 ~g~i~~~e~~~~l~~~ 34 (169)
+|.++..|...+.+.+
T Consensus 16 DG~v~~~E~~~i~~~l 31 (111)
T cd07176 16 DGDIDDAELQAIEALL 31 (111)
T ss_pred ccCCCHHHHHHHHHHH
Confidence 5888888877776654
No 232
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=31.42 E-value=1.4e+02 Score=18.91 Aligned_cols=48 Identities=15% Similarity=0.234 Sum_probs=36.1
Q ss_pred hhhhCCCCeeeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHH
Q 030933 78 SDLERGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFIS 130 (169)
Q Consensus 78 ~~~D~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~ 130 (169)
-.+...+..|+.+.++.++...|..+.+..+..++.... .++.+|-+.
T Consensus 8 llL~~agkei~e~~l~~vl~aaGveve~~r~k~lvaaLe-----g~~idE~i~ 55 (109)
T COG2058 8 LLLHLAGKEITEDNLKSVLEAAGVEVEEARAKALVAALE-----GVDIDEVIK 55 (109)
T ss_pred HHHHHccCcCCHHHHHHHHHHcCCCccHHHHHHHHHHhc-----CCCHHHHHH
Confidence 334433348999999999999999999999998888875 245555543
No 233
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=31.40 E-value=1.6e+02 Score=19.60 Aligned_cols=36 Identities=6% Similarity=0.043 Sum_probs=29.7
Q ss_pred CCCCeeeHHHHHHHHHHcCCCCCHHHHHHHHHhcCC
Q 030933 82 RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQ 117 (169)
Q Consensus 82 ~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~ 117 (169)
..+...|.+|+...|++.|+.+|...+...++....
T Consensus 12 ~~~~i~tqeeL~~~L~~~G~~vsqaTIsRdL~elgl 47 (146)
T TIGR01529 12 TEEKISTQEELVALLKAEGIEVTQATVSRDLRELGA 47 (146)
T ss_pred HcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHcCC
Confidence 355678899999999999999999988888887654
No 234
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=30.46 E-value=1.4e+02 Score=18.64 Aligned_cols=34 Identities=12% Similarity=0.094 Sum_probs=27.3
Q ss_pred CCCeeeHHHHHHHHHHcCCCCCHHHHHHHHHhcC
Q 030933 83 GRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFD 116 (169)
Q Consensus 83 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 116 (169)
.+-.+|.+++..+|+..|..+.......+.+.+.
T Consensus 14 ~~~~~Tae~I~~ilkAaGveve~~~~~~f~~~L~ 47 (103)
T cd05831 14 DGIEITADNINALLKAAGVNVEPYWPGLFAKALE 47 (103)
T ss_pred CCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc
Confidence 3457999999999999998888877777777664
No 235
>cd05832 Ribosomal_L12p Ribosomal protein L12p. This subfamily includes archaeal L12p, the protein that is functionally equivalent to L7/L12 in bacteria and the P1 and P2 proteins in eukaryotes. L12p is homologous to P1 and P2 but is not homologous to bacterial L7/L12. It is located in the L12 stalk, with proteins L10, L11, and 23S rRNA. L12p is the only protein in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain six copies of L12p (three homodimers), while eukaryotes have four copies (two heterodimers), and bacteria may have four or six copies (two or three homodimers), depending on the species. The organization of proteins within the stalk has been characterized primarily in bacteria, where L7/L12 forms either two or three homodimers and each homodimer binds to the extended C-terminal helix of L10. L7/L12 is attached to the ribosome through L10 and is the only ribosomal protein that does not directly intera
Probab=30.09 E-value=1.5e+02 Score=18.75 Aligned_cols=37 Identities=14% Similarity=0.239 Sum_probs=30.4
Q ss_pred hhhCCCCeeeHHHHHHHHHHcCCCCCHHHHHHHHHhcC
Q 030933 79 DLERGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFD 116 (169)
Q Consensus 79 ~~D~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 116 (169)
.++.+. .||.+.+..+|+..|..+....+..+...+.
T Consensus 10 L~~~G~-eITae~I~~IL~AAGveVd~~~~~ala~aL~ 46 (106)
T cd05832 10 LHYAGK-EINEENLKKVLEAAGIEVDEARVKALVAALE 46 (106)
T ss_pred HHhcCC-CCCHHHHHHHHHHhCCcccHHHHHHHHHHHc
Confidence 334444 8999999999999999998888888888875
No 236
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=29.63 E-value=1.8e+02 Score=19.64 Aligned_cols=42 Identities=12% Similarity=0.182 Sum_probs=23.9
Q ss_pred CCCcccHHHHHHHHHHH--HHHHHHHhhhhCCCCeeeHHHHHHHHHH
Q 030933 54 RNGTMSFEEFVELNKFL--LKVQHAFSDLERGRGYLVPDNVYEALVK 98 (169)
Q Consensus 54 ~~~~i~~~eF~~~~~~~--~~~~~~F~~~D~~~g~i~~~el~~~l~~ 98 (169)
.++.|++..|..++... ..+..-|- ++...+|.++++.++..
T Consensus 96 ~n~~i~~~~ff~~lQ~~lGdWIT~~~L---kh~n~MSk~Qik~L~~~ 139 (175)
T PF04876_consen 96 TNGLIDIGKFFDILQPKLGDWITKNFL---KHPNRMSKDQIKTLCEQ 139 (175)
T ss_pred cccceeHHHHHHHHHHHhhhHHHHHHH---hccchhhHHHHHHHHHH
Confidence 35668888887776532 22333232 34456777777766543
No 237
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=28.73 E-value=53 Score=15.50 Aligned_cols=12 Identities=25% Similarity=0.188 Sum_probs=7.1
Q ss_pred eeeHHHHHHHHH
Q 030933 86 YLVPDNVYEALV 97 (169)
Q Consensus 86 ~i~~~el~~~l~ 97 (169)
.||.+|++.+|.
T Consensus 16 Gls~eeir~FL~ 27 (30)
T PF08671_consen 16 GLSKEEIREFLE 27 (30)
T ss_dssp T--HHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 477777777775
No 238
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=28.71 E-value=1.3e+02 Score=18.18 Aligned_cols=30 Identities=7% Similarity=0.056 Sum_probs=23.0
Q ss_pred eeeHHHHHHHHHHcCCCCCHHHHHHHHHhc
Q 030933 86 YLVPDNVYEALVKIGFSLDSPAFYTVCESF 115 (169)
Q Consensus 86 ~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 115 (169)
.|+.++++++.+-..+.+++++++.+...+
T Consensus 2 ~i~~e~i~~la~La~l~l~~ee~~~~~~~l 31 (95)
T PRK00034 2 AITREEVKHLAKLARLELSEEELEKFAGQL 31 (95)
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 367788888888778888888877776654
No 239
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=28.61 E-value=68 Score=21.92 Aligned_cols=45 Identities=13% Similarity=0.149 Sum_probs=28.8
Q ss_pred HHHHHHHhhhhC-CCCeeeHHHHHHHHHHcCCCCCHHHHHHHHHhcC
Q 030933 71 LKVQHAFSDLER-GRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFD 116 (169)
Q Consensus 71 ~~~~~~F~~~D~-~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 116 (169)
.++..+++.+-. +...++..+|.+.+ .+|+.+|++++...+..+-
T Consensus 85 ~Ql~AA~~Yl~~~~~~~~d~~~Fe~~c-GVGV~VT~E~I~~~V~~~i 130 (164)
T PF04558_consen 85 LQLDAALKYLKSNPSEPIDVAEFEKAC-GVGVVVTPEQIEAAVEKYI 130 (164)
T ss_dssp HHHHHHHHHHHHHGG-G--HHHHHHTT-TTT----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHc-CCCeEECHHHHHHHHHHHH
Confidence 578888888874 44589999988777 4578899999888777653
No 240
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=28.39 E-value=1.4e+02 Score=17.97 Aligned_cols=70 Identities=16% Similarity=0.118 Sum_probs=42.2
Q ss_pred HHHcCCCCCCHHHHHHHHHHhcCCCCCccc---HHHHHHHHHH--HHHHHHHHhhhh-CCCCeeeHHHHHHHHHHcCCC
Q 030933 30 AFAVGNLDFSLSVVQQMIRMYDFDRNGTMS---FEEFVELNKF--LLKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFS 102 (169)
Q Consensus 30 ~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~---~~eF~~~~~~--~~~~~~~F~~~D-~~~g~i~~~el~~~l~~~~~~ 102 (169)
.++..-..+|...+.++.+... -..|+ |+|....+.. .+.+..+-.... .+.-+|+.+++.-+++..|.+
T Consensus 6 ~~~~~~~gi~k~~I~RLarr~G---vkRIS~d~y~e~~~~l~~~l~~I~~dav~ya~Ha~RKTVt~~DV~~alkr~g~~ 81 (85)
T cd00076 6 VLRDNIKGITKPAIRRLARRGG---VKRISGGVYDEVRNVLKSYLEDVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 81 (85)
T ss_pred HHHHhhccCCHHHHHHHHHHcC---cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHCCCC
Confidence 3343333566777777777543 23454 6666665432 233444444444 366679999999999988755
No 241
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=28.35 E-value=1.8e+02 Score=19.25 Aligned_cols=16 Identities=6% Similarity=0.063 Sum_probs=7.9
Q ss_pred HHHHHHHHcCCCCCCH
Q 030933 25 AQLKHAFAVGNLDFSL 40 (169)
Q Consensus 25 ~e~~~~l~~~~~~~~~ 40 (169)
.++.+.++..|..+|+
T Consensus 6 ~~~~~~lk~~glr~T~ 21 (145)
T COG0735 6 EDAIERLKEAGLRLTP 21 (145)
T ss_pred HHHHHHHHHcCCCcCH
Confidence 3445555555554444
No 242
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=28.10 E-value=82 Score=17.61 Aligned_cols=15 Identities=33% Similarity=0.271 Sum_probs=7.0
Q ss_pred eeHHHHHHHHHHcCC
Q 030933 87 LVPDNVYEALVKIGF 101 (169)
Q Consensus 87 i~~~el~~~l~~~~~ 101 (169)
++.+|...-++..|.
T Consensus 21 Ls~~ev~~r~~~~G~ 35 (69)
T PF00690_consen 21 LSSEEVEERRKKYGP 35 (69)
T ss_dssp BTHHHHHHHHHHHSS
T ss_pred CCHHHHHHHHHhccc
Confidence 444444444444443
No 243
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=27.95 E-value=88 Score=24.08 Aligned_cols=84 Identities=15% Similarity=0.172 Sum_probs=43.9
Q ss_pred CCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHH-HHHHHHHHHhhhh-C---CCCeeeH
Q 030933 15 DSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNK-FLLKVQHAFSDLE-R---GRGYLVP 89 (169)
Q Consensus 15 D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~-~~~~~~~~F~~~D-~---~~g~i~~ 89 (169)
|.|+...+--++|......+.......-+.-+.+.|-..=+|.|=|+|..+-++ ....+.++|.... + +-|.|+
T Consensus 53 DyNr~HF~R~~eF~~~~d~l~~e~r~~FidFLerScTaEFSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlN- 131 (351)
T CHL00185 53 DYNQQHFIRDNEFNQSWSNLDEKTKSLFVEFLERSCTAEFSGFLLYKELSRKLKDKNPLLAEGFLLMSRDEARHAGFLN- 131 (351)
T ss_pred CccccccccChhhhhchhhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhccCCcHHHHHHHHHhhhhHHHhhhHH-
Confidence 444444555555554333221111112233344444445567777777666543 2356888888775 3 567765
Q ss_pred HHHHHHHHHcCCCC
Q 030933 90 DNVYEALVKIGFSL 103 (169)
Q Consensus 90 ~el~~~l~~~~~~~ 103 (169)
++|+.+|+.+
T Consensus 132 ----kam~df~l~l 141 (351)
T CHL00185 132 ----KAMSDFNLSL 141 (351)
T ss_pred ----HHHHHcCccc
Confidence 5677666543
No 244
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=27.49 E-value=1.6e+02 Score=22.71 Aligned_cols=53 Identities=17% Similarity=0.175 Sum_probs=29.2
Q ss_pred cCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH------HHHHHHHhhhhCCCCeeeHHHHHHHH
Q 030933 33 VGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL------LKVQHAFSDLERGRGYLVPDNVYEAL 96 (169)
Q Consensus 33 ~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~------~~~~~~F~~~D~~~g~i~~~el~~~l 96 (169)
.+|..-...++...++ .|.++.+|=+.+++.. +.++..++.++ ||.+||.+++
T Consensus 284 KfG~~~~~~~~s~~IR------~G~itReeal~~v~~~d~~~~~~~~~~~~~~lg-----~t~~ef~~~~ 342 (343)
T TIGR03573 284 KFGFGRATDHASIDIR------SGRITREEAIELVKEYDGEFPKEDLEYFLKYLG-----ISEEEFWKTV 342 (343)
T ss_pred hcCCCcCchHHHHHHH------cCCCCHHHHHHHHHHhcccccHHHHHHHHHHhC-----CCHHHHHHHh
Confidence 3455444444444333 3777777777776542 34455555544 6667776654
No 245
>cd07311 terB_like_1 tellurium resistance terB-like protein, subgroup 1. This family includes several uncharacterized bacterial proteins. The prototype of this CD is tellurite resistance protein from Nostoc punctiforme that belongs to COG3793. Its precise biological function and its mechanism responsible for tellurium resistance still remains rather poorly understood.
Probab=26.91 E-value=2e+02 Score=19.29 Aligned_cols=90 Identities=16% Similarity=0.163 Sum_probs=47.4
Q ss_pred CCcccHHHHHHHHHcCCC-CCCHHHHHHHHHHhcCCCCCcccHHHHHHHHH---HHHHHHHHHhhhhCCCCeeeHHH---
Q 030933 19 TGSIAAAQLKHAFAVGNL-DFSLSVVQQMIRMYDFDRNGTMSFEEFVELNK---FLLKVQHAFSDLERGRGYLVPDN--- 91 (169)
Q Consensus 19 ~g~i~~~e~~~~l~~~~~-~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~---~~~~~~~~F~~~D~~~g~i~~~e--- 91 (169)
+|.++..|...+-.-+.. .++.++...++.. ..+-.++...|..... ....+...+ ...--+|.++..|
T Consensus 37 DG~Vse~Ei~~~~~~m~~~~L~~e~~~~aie~---~~~~~L~~~~~~~~~~~~~~~~ll~~~l-~vA~ADG~l~~~E~~l 112 (150)
T cd07311 37 DGVISPEERDWAIGYAAARGGDADMVEELKEY---TADEDLEEVDFRSPNIKSSRRALLYDAI-QVCAADGELSPGEVAA 112 (150)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHh---CccccHHHHHHHHHhcchhHHHHHHHHH-HHHHcCCCCCHHHHHH
Confidence 699999988655443222 5777777787777 3333344443332221 111222222 1122467788777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHh
Q 030933 92 VYEALVKIGFSLDSPAFYTVCES 114 (169)
Q Consensus 92 l~~~l~~~~~~~~~~~~~~~~~~ 114 (169)
+.++...+| ++..++..+...
T Consensus 113 L~~iA~~LG--is~~~~~~l~~~ 133 (150)
T cd07311 113 VRKAASLLG--ISEDEVQKLEEI 133 (150)
T ss_pred HHHHHHHcC--CCHHHHHHHHHH
Confidence 334444444 556666666554
No 246
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=26.40 E-value=1.1e+02 Score=16.23 Aligned_cols=30 Identities=17% Similarity=0.351 Sum_probs=20.3
Q ss_pred CCcccHHHHHHHHHcCCCCCCHHHHHHHHHHhcCC
Q 030933 19 TGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFD 53 (169)
Q Consensus 19 ~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~ 53 (169)
+|.++..+++..+. .+.+.+..++..+|..
T Consensus 8 ~~~itv~~~rd~lg-----~sRK~ai~lLE~lD~~ 37 (50)
T PF09107_consen 8 NGEITVAEFRDLLG-----LSRKYAIPLLEYLDRE 37 (50)
T ss_dssp TSSBEHHHHHHHHT-----S-HHHHHHHHHHHHHT
T ss_pred CCcCcHHHHHHHHC-----ccHHHHHHHHHHHhcc
Confidence 57788888887774 5666666777777644
No 247
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=26.35 E-value=1.2e+02 Score=23.04 Aligned_cols=84 Identities=15% Similarity=0.169 Sum_probs=44.0
Q ss_pred CCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-HHHHHHHHhhhh-C---CCCeeeH
Q 030933 15 DSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF-LLKVQHAFSDLE-R---GRGYLVP 89 (169)
Q Consensus 15 D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~-~~~~~~~F~~~D-~---~~g~i~~ 89 (169)
|.|+...+--++|......+.......-+.-+.+.|-..=+|.|=|+|..+-++. ...+.++|.... + +-|.|+
T Consensus 37 DyNr~HF~R~~ef~~~~~~~~~e~r~~FidFLerSctaEFSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlN- 115 (323)
T cd01047 37 DYNRHHFVRNDEFDQAADKIDPELRQIFLEFLERSCTSEFSGFLLYKELGRRLKNTNPVVAELFRLMARDEARHAGFLN- 115 (323)
T ss_pred CcccccccCCchhhhhhhhCCHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHcccCCcHHHHHHHHHhhhHHHHhhhHH-
Confidence 4444444444555543332211122222333444444455677777776664432 356788887775 3 567775
Q ss_pred HHHHHHHHHcCCCC
Q 030933 90 DNVYEALVKIGFSL 103 (169)
Q Consensus 90 ~el~~~l~~~~~~~ 103 (169)
++|+.+|..+
T Consensus 116 ----kam~df~l~l 125 (323)
T cd01047 116 ----KALSDFNLAL 125 (323)
T ss_pred ----HHHHHcCccc
Confidence 5677766544
No 248
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=26.26 E-value=1.9e+02 Score=19.01 Aligned_cols=49 Identities=14% Similarity=0.236 Sum_probs=36.9
Q ss_pred CCCeeeHHHHHHHHHHcC---------CCCCHHHHHHHHHhcCCCCCC-cccHHHHHHH
Q 030933 83 GRGYLVPDNVYEALVKIG---------FSLDSPAFYTVCESFDQNKNG-RLRLDDFISL 131 (169)
Q Consensus 83 ~~g~i~~~el~~~l~~~~---------~~~~~~~~~~~~~~~d~~~~~-~i~~~eF~~~ 131 (169)
|+-.||.+||.++...-. +.+++++++.+.+.+...+.+ .+|..|-+..
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 778899999999988631 246788898888888776555 4888876654
No 249
>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]
Probab=26.16 E-value=1.4e+02 Score=18.35 Aligned_cols=30 Identities=7% Similarity=0.031 Sum_probs=23.1
Q ss_pred eeeHHHHHHHHHHcCCCCCHHHHHHHHHhc
Q 030933 86 YLVPDNVYEALVKIGFSLDSPAFYTVCESF 115 (169)
Q Consensus 86 ~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 115 (169)
.|+.++++++.+-....+++++.+.+...+
T Consensus 2 ~i~~e~v~~la~LarL~lseee~e~~~~~l 31 (96)
T COG0721 2 AIDREEVKHLAKLARLELSEEELEKFATQL 31 (96)
T ss_pred ccCHHHHHHHHHHhhcccCHHHHHHHHHHH
Confidence 467788888887777888888887776665
No 250
>PF10982 DUF2789: Protein of unknown function (DUF2789); InterPro: IPR021250 This bacterial family of proteins has no known function. ; PDB: 2KP6_A.
Probab=26.14 E-value=91 Score=18.28 Aligned_cols=40 Identities=13% Similarity=0.175 Sum_probs=24.5
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHH
Q 030933 90 DNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFI 129 (169)
Q Consensus 90 ~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~ 129 (169)
-.+...+..+|.+-+++.++.++.......+-.+.-..|-
T Consensus 6 h~l~~LF~QLGL~~~~~~I~~FI~~H~L~~~~~L~dApFW 45 (74)
T PF10982_consen 6 HTLSNLFAQLGLDSSDEAIEAFIETHQLPADVHLADAPFW 45 (74)
T ss_dssp THHHHHHHHHTS---HHHHHHHHHHS---TTS-STT-TTS
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHhCCCCCCCcccCCCCC
Confidence 4577888889999999999999999876665555554443
No 251
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=25.77 E-value=1.7e+02 Score=18.07 Aligned_cols=32 Identities=31% Similarity=0.461 Sum_probs=20.7
Q ss_pred CCCeeeHHHHHHHHHHcCCCCCHHHHHHHHHh
Q 030933 83 GRGYLVPDNVYEALVKIGFSLDSPAFYTVCES 114 (169)
Q Consensus 83 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~ 114 (169)
.++.+|.+|+.+.++.-+..++...+-..++.
T Consensus 13 ~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~ 44 (116)
T cd07153 13 SDGHLTAEEIYERLRKKGPSISLATVYRTLEL 44 (116)
T ss_pred CCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 35677788887777776666666655544444
No 252
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=25.76 E-value=1.7e+02 Score=20.38 Aligned_cols=33 Identities=12% Similarity=0.166 Sum_probs=24.9
Q ss_pred CCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 030933 17 EKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRM 49 (169)
Q Consensus 17 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~ 49 (169)
|.+|.++.+++...++.-+...+.+.+..+...
T Consensus 29 d~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~ 61 (179)
T PRK00819 29 DEEGWVDIDALIEALAKAYKWVTRELLEAVVES 61 (179)
T ss_pred CCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHc
Confidence 567899999998888754556778877777764
No 253
>PF01498 HTH_Tnp_Tc3_2: Transposase; InterPro: IPR002492 Transposase proteins are necessary for efficient DNA transposition. This family includes the amino-terminal region of Tc1, Tc1A, Tc1B and Tc2B transposases of Caenorhabditis elegans. The region encompasses the specific DNA binding and second DNA recognition domains as well as an amino-terminal region of the catalytic domain of Tc3 as described in []. Tc3 is a member of the Tc1/mariner family of transposable elements. This entry also includes histone-lysine N-methyltransferase SETMAR, which is a SET domain and mariner transposase fusion gene-containing protein. This histone methyltransferase has sequence-specific DNA-binding activity and recognises the 19-mer core of the 5'-terminal inverted repeats (TIRs) of the Hsmar1 element. This protein has DNA nicking activity, and has in vivo end joining activity and may mediate genomic integration of foreign DNA [, , , ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated, 0015074 DNA integration; PDB: 3K9K_B 3F2K_B 3K9J_B 1U78_A.
Probab=25.68 E-value=1e+02 Score=17.32 Aligned_cols=33 Identities=9% Similarity=0.125 Sum_probs=15.8
Q ss_pred CCeeeHHHHHHHHHHcCCCCCHHHHHHHHHhcC
Q 030933 84 RGYLVPDNVYEALVKIGFSLDSPAFYTVCESFD 116 (169)
Q Consensus 84 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 116 (169)
+..+|..++..-|...|..++...+...++..+
T Consensus 11 ~p~~s~~~i~~~l~~~~~~vS~~TI~r~L~~~g 43 (72)
T PF01498_consen 11 NPRISAREIAQELQEAGISVSKSTIRRRLREAG 43 (72)
T ss_dssp -----HHHHHHHT---T--S-HHHHHHHHHHT-
T ss_pred CCCCCHHHHHHHHHHccCCcCHHHHHHHHHHcC
Confidence 456777777777766677788887777777653
No 254
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=25.42 E-value=1.1e+02 Score=20.70 Aligned_cols=49 Identities=12% Similarity=0.023 Sum_probs=28.0
Q ss_pred eeHHHHHHHHHHcC----CCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 030933 87 LVPDNVYEALVKIG----FSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFL 135 (169)
Q Consensus 87 i~~~el~~~l~~~~----~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l~~~ 135 (169)
|+...+...|+..+ -.++.-++...|..+....-..++|++|...|..+
T Consensus 34 m~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~el 86 (180)
T KOG4070|consen 34 MNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALEEL 86 (180)
T ss_pred cccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHHHH
Confidence 55556666666543 23455555555655555555567777776655433
No 255
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=25.30 E-value=3.6e+02 Score=21.62 Aligned_cols=80 Identities=11% Similarity=0.066 Sum_probs=48.6
Q ss_pred CCCeeeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHH---HHHHHHHHHHHHHHhhhCCCCceeEE-eehh
Q 030933 83 GRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDF---ISLCIFLQSARNLFNSFDTAKQGRIT-LDLN 158 (169)
Q Consensus 83 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF---~~~l~~~~~~~~~f~~~d~~~~g~i~-~~~~ 158 (169)
....+....|++.|.+.....+.-+.-.+-...|...++.||--|| ...+.....+-+-++..-..+.|++. +|+.
T Consensus 187 ~k~ivPW~~F~q~L~~~Hpi~~gleAmaLktTIDLtcnd~iS~FEFDvFTRLFqPw~tllkNWq~LavtHPGYmAFLTYD 266 (563)
T KOG1785|consen 187 KKTIVPWKTFRQALHKVHPISSGLEAMALKTTIDLTCNDFISNFEFDVFTRLFQPWKTLLKNWQTLAVTHPGYMAFLTYD 266 (563)
T ss_pred CcccccHHHHHHHHHhcCCCcchhHHHHhhceeccccccceeeehhhhHHHhhccHHHHHHhhhhhhccCCceeEEeeHH
Confidence 3456777777777776532222222333444466667777775555 44445556677777777888888883 6776
Q ss_pred HHHH
Q 030933 159 QFIF 162 (169)
Q Consensus 159 ~~~~ 162 (169)
|--.
T Consensus 267 EVk~ 270 (563)
T KOG1785|consen 267 EVKA 270 (563)
T ss_pred HHHH
Confidence 6443
No 256
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=25.12 E-value=1.1e+02 Score=15.76 Aligned_cols=37 Identities=16% Similarity=0.134 Sum_probs=23.3
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHH
Q 030933 25 AQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVE 65 (169)
Q Consensus 25 ~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~ 65 (169)
+|....|..+| +++.++...+..... ....+.++.++
T Consensus 4 ~d~~~AL~~LG--y~~~e~~~av~~~~~--~~~~~~e~~ik 40 (47)
T PF07499_consen 4 EDALEALISLG--YSKAEAQKAVSKLLE--KPGMDVEELIK 40 (47)
T ss_dssp HHHHHHHHHTT--S-HHHHHHHHHHHHH--STTS-HHHHHH
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHhhc--CCCCCHHHHHH
Confidence 56777777666 677888888877754 33455666554
No 257
>TIGR01446 DnaD_dom DnaD and phage-associated domain. This model represents the conserved domain of DnaD, part of Bacillus subtilis replication restart primosome, and of a number of phage-associated proteins. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria.
Probab=25.02 E-value=94 Score=17.53 Aligned_cols=41 Identities=10% Similarity=0.001 Sum_probs=22.5
Q ss_pred HhhhhC-CCCeeeHHHHHHHHHHc-CCCCCHHHHHHHHHhcCC
Q 030933 77 FSDLER-GRGYLVPDNVYEALVKI-GFSLDSPAFYTVCESFDQ 117 (169)
Q Consensus 77 F~~~D~-~~g~i~~~el~~~l~~~-~~~~~~~~~~~~~~~~d~ 117 (169)
|..+.+ ..+.+|+.++..+..-+ ....+.+.+...++.+-.
T Consensus 2 ~~~~e~~~gr~ls~~e~~~i~~~~~~~~~~~evI~~ai~~a~~ 44 (73)
T TIGR01446 2 YDFFEENFGRMLSPFEMEDLKYWLDEFGNSPELIKEALKEAVS 44 (73)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 344453 23367766655555433 223557777777776543
No 258
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=24.82 E-value=1.4e+02 Score=16.84 Aligned_cols=10 Identities=30% Similarity=0.411 Sum_probs=3.5
Q ss_pred CCeeeHHHHH
Q 030933 84 RGYLVPDNVY 93 (169)
Q Consensus 84 ~g~i~~~el~ 93 (169)
+|.|+.+.+.
T Consensus 37 ~g~I~~d~~l 46 (65)
T PF09454_consen 37 RGSIDLDTFL 46 (65)
T ss_dssp TTSS-HHHHH
T ss_pred cCCCCHHHHH
Confidence 3444444333
No 259
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=24.58 E-value=2.6e+02 Score=19.85 Aligned_cols=13 Identities=15% Similarity=0.258 Sum_probs=5.7
Q ss_pred CCcccHHHHHHHH
Q 030933 19 TGSIAAAQLKHAF 31 (169)
Q Consensus 19 ~g~i~~~e~~~~l 31 (169)
+|.||.++....+
T Consensus 11 DGTITl~Ds~~~i 23 (220)
T COG4359 11 DGTITLNDSNDYI 23 (220)
T ss_pred CCceEecchhHHH
Confidence 3444444444443
No 260
>PF13331 DUF4093: Domain of unknown function (DUF4093)
Probab=24.31 E-value=1.3e+02 Score=18.11 Aligned_cols=49 Identities=20% Similarity=0.361 Sum_probs=29.0
Q ss_pred cccHHHHHHHH--------HHHHHHHHHHhhhhCCCCeeeHHHHHHHHHHcCCCCCHHHHHHHH
Q 030933 57 TMSFEEFVELN--------KFLLKVQHAFSDLERGRGYLVPDNVYEALVKIGFSLDSPAFYTVC 112 (169)
Q Consensus 57 ~i~~~eF~~~~--------~~~~~~~~~F~~~D~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~ 112 (169)
.+++.+++.+= ...+.+-..+ +=|+.+..+|.+.|..+| +|.+++...+
T Consensus 30 ~it~~dL~~~GL~g~~~s~~rR~~l~~~L-----~iGy~N~KqllkrLN~f~--it~~e~~~al 86 (87)
T PF13331_consen 30 EITWEDLIELGLIGGPDSKERREKLGEYL-----GIGYGNAKQLLKRLNMFG--ITREEFEEAL 86 (87)
T ss_pred cCCHHHHHHCCCCCCccHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHcC--CCHHHHHHHh
Confidence 48888888741 1112222222 237777788888777755 5677766554
No 261
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=24.24 E-value=1.8e+02 Score=18.20 Aligned_cols=25 Identities=24% Similarity=0.191 Sum_probs=19.5
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHhc
Q 030933 91 NVYEALVKIGFSLDSPAFYTVCESF 115 (169)
Q Consensus 91 el~~~l~~~~~~~~~~~~~~~~~~~ 115 (169)
-+...|...|+++|+++++.+++..
T Consensus 76 ~v~~~L~~~gi~~t~~~i~~~IEaA 100 (108)
T PF09682_consen 76 YVKERLKKKGIKVTDEQIEGAIEAA 100 (108)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3556677789999999998887653
No 262
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=24.08 E-value=1.7e+02 Score=17.60 Aligned_cols=50 Identities=16% Similarity=0.395 Sum_probs=26.3
Q ss_pred CCcccHHHHHHHHHcCC-CCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 030933 19 TGSIAAAQLKHAFAVGN-LDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNK 68 (169)
Q Consensus 19 ~g~i~~~e~~~~l~~~~-~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~ 68 (169)
+|.++..|...+-..+. ...+......+...+........++.+|...+.
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 63 (106)
T cd07316 13 DGRVSEAEIQAARALMDQMGLDAEARREAIRLFNEGKESDFGLEEYARQFR 63 (106)
T ss_pred cCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcCCCCHHHHHHHHH
Confidence 68888887665544321 233343444444444333333366777776554
No 263
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=24.02 E-value=1.3e+02 Score=16.26 Aligned_cols=30 Identities=17% Similarity=0.045 Sum_probs=16.8
Q ss_pred CCCeeeHHHHHHHHHHcCCCCCHHHHHHHH
Q 030933 83 GRGYLVPDNVYEALVKIGFSLDSPAFYTVC 112 (169)
Q Consensus 83 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~ 112 (169)
..|.|+.+||..-+..+-.-.+..++..++
T Consensus 20 a~GrL~~~Ef~~R~~~a~~A~t~~eL~~l~ 49 (53)
T PF08044_consen 20 AEGRLSLDEFDERLDAAYAARTRGELDALF 49 (53)
T ss_pred HCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 356777777766666543334445554444
No 264
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=23.92 E-value=1.1e+02 Score=15.02 Aligned_cols=16 Identities=13% Similarity=0.154 Sum_probs=11.3
Q ss_pred eHHHHHHHHHHcCCCC
Q 030933 88 VPDNVYEALVKIGFSL 103 (169)
Q Consensus 88 ~~~el~~~l~~~~~~~ 103 (169)
|.++|+..|...|++.
T Consensus 5 s~~~L~~wL~~~gi~~ 20 (38)
T PF10281_consen 5 SDSDLKSWLKSHGIPV 20 (38)
T ss_pred CHHHHHHHHHHcCCCC
Confidence 4577888888777654
No 265
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=23.91 E-value=2.1e+02 Score=18.54 Aligned_cols=44 Identities=20% Similarity=0.268 Sum_probs=29.2
Q ss_pred CcccHHHHHHHHHH-------------HHHHHHHHhhhh-C-C-CCeeeHHHHHHHHHHc
Q 030933 56 GTMSFEEFVELNKF-------------LLKVQHAFSDLE-R-G-RGYLVPDNVYEALVKI 99 (169)
Q Consensus 56 ~~i~~~eF~~~~~~-------------~~~~~~~F~~~D-~-~-~g~i~~~el~~~l~~~ 99 (169)
+.|-|..|...++- ...+.++|+... . . +..|+..++..++..+
T Consensus 13 n~IrfsaYRtA~KLR~lQk~~~l~lv~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~i 72 (127)
T PF09068_consen 13 NNIRFSAYRTAMKLRFLQKRLCLDLVDLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSI 72 (127)
T ss_dssp TT-SSHHHHHHHHHHHHHHHTTGGG--HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHH
T ss_pred hhHHHHHhHHHHHHHHHHHHHhheeeeHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHH
Confidence 34666666665431 256778888888 4 3 6789999998888764
No 266
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=23.75 E-value=1.4e+02 Score=19.82 Aligned_cols=31 Identities=10% Similarity=0.112 Sum_probs=22.4
Q ss_pred eeHHHHHHHHHHcCCCCCHHHHHHHHHhcCC
Q 030933 87 LVPDNVYEALVKIGFSLDSPAFYTVCESFDQ 117 (169)
Q Consensus 87 i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~ 117 (169)
.|++++..+......++|+++++.+++..+.
T Consensus 27 WT~eDV~~~a~gme~~lTd~E~~aVL~~I~~ 57 (139)
T PF07128_consen 27 WTREDVRALADGMEYNLTDDEARAVLARIGD 57 (139)
T ss_pred ecHHHHHHHHhcCCCCCCHHHHHHHHHHHhc
Confidence 4677777776656667788888888777665
No 267
>PRK10391 oriC-binding nucleoid-associated protein; Provisional
Probab=23.20 E-value=1.4e+02 Score=17.31 Aligned_cols=26 Identities=4% Similarity=0.227 Sum_probs=11.5
Q ss_pred HHHHHHHHHcCCCCCH-HHHHHHHHhc
Q 030933 90 DNVYEALVKIGFSLDS-PAFYTVCESF 115 (169)
Q Consensus 90 ~el~~~l~~~~~~~~~-~~~~~~~~~~ 115 (169)
+.+.+++......+++ +++..+...+
T Consensus 17 eTLEkv~e~~~y~L~~~~e~~~f~~Aa 43 (71)
T PRK10391 17 ESLEKLFDHLNYTLTDDQEIINMYRAA 43 (71)
T ss_pred HHHHHHHHHhhcccCCHHHHHHHHHHH
Confidence 4444444444444443 4444444433
No 268
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=23.07 E-value=53 Score=17.61 Aligned_cols=38 Identities=11% Similarity=0.261 Sum_probs=21.2
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHcCCCCCC-HHHHHHHHHH
Q 030933 10 WFDRVDSEKTGSIAAAQLKHAFAVGNLDFS-LSVVQQMIRM 49 (169)
Q Consensus 10 ~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~-~~~~~~l~~~ 49 (169)
+|+.+...+++.+|..|+..-+.. .++. ...+.++++.
T Consensus 11 I~dii~~~g~~~ls~~eia~~l~~--~~p~~~~~L~RimR~ 49 (51)
T PF08100_consen 11 IPDIIHNAGGGPLSLSEIAARLPT--SNPSAPPMLDRIMRL 49 (51)
T ss_dssp HHHHHHHHTTS-BEHHHHHHTSTC--T-TTHHHHHHHHHHH
T ss_pred cHHHHHHcCCCCCCHHHHHHHcCC--CCcchHHHHHHHHHH
Confidence 344444444688999998877663 2233 3455666553
No 269
>cd07357 HN_L-whirlin_R2_like Second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains. This subgroup contains the second of two harmonin_N_like domains found in the long isoform of whirlin, and related domains. Whirlin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds various components of the Usher protein network of the inner ear and the retina: erythrocyte protein p55, usherin, VlGR1, and myosin XVa. The long isoform of whirlin contains two harmonin_N_like domains, and three PDZ protein-binding domains, PDZ1-3. The short whirlin isoform, derived from an alternative start ATG, lacks the first harmonin_N_like domain but has in common with the long isoform, this second harmonin_N_like domain (designated repeat 2, included in this subgroup) and PDZ3. This second harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=22.91 E-value=1.2e+02 Score=17.99 Aligned_cols=31 Identities=16% Similarity=0.290 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 030933 103 LDSPAFYTVCESFDQNKNGRLRLDDFISLCI 133 (169)
Q Consensus 103 ~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l~ 133 (169)
+++.+...+-...+.-..|+|+.+.|+..+.
T Consensus 16 L~e~E~~tm~yyl~eY~~~~~tVealV~aL~ 46 (81)
T cd07357 16 LSENERATLSYYLDEYRSGHISVDALVMALF 46 (81)
T ss_pred cCHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4455555555555545556666666666554
No 270
>TIGR01321 TrpR trp operon repressor, proteobacterial. This model represents TrpR, the repressor of the trp operon. It is found so far only in the gamma subdivision of the proteobacteria and in Chlamydia trachomatis. All members belong to species capable of tryptophan biosynthesis.
Probab=22.53 E-value=2e+02 Score=17.75 Aligned_cols=30 Identities=13% Similarity=0.123 Sum_probs=16.6
Q ss_pred CCHHHHHHHHHhcCCCC---CCcccHHHHHHHH
Q 030933 103 LDSPAFYTVCESFDQNK---NGRLRLDDFISLC 132 (169)
Q Consensus 103 ~~~~~~~~~~~~~d~~~---~~~i~~~eF~~~l 132 (169)
+|+++...+..++..-+ .+.+|+.|-...+
T Consensus 33 LTp~E~~~l~~R~~i~~~Ll~~~~tQrEIa~~l 65 (94)
T TIGR01321 33 LTRSEREDLGDRIRIVNELLNGNMSQREIASKL 65 (94)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHh
Confidence 45555555555544433 3567777666654
No 271
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=22.49 E-value=84 Score=29.74 Aligned_cols=63 Identities=8% Similarity=0.026 Sum_probs=45.4
Q ss_pred HHHHHHHhhhh-CCCCeeeHHHHHHHHHHcCCC----CCHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 030933 71 LKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFS----LDSPAFYTVCESFDQNKNGRLRLDDFISLCIF 134 (169)
Q Consensus 71 ~~~~~~F~~~D-~~~g~i~~~el~~~l~~~~~~----~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l~~ 134 (169)
+...++|..+| +..|.|...++..+++.+..+ ...+. .-+...+....++.|++.+=+.++.+
T Consensus 1417 ~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~ 1484 (1592)
T KOG2301|consen 1417 EKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTK 1484 (1592)
T ss_pred HHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHH
Confidence 67889999999 699999999999999987432 22222 23344455567788888887777653
No 272
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=22.36 E-value=1.3e+02 Score=23.15 Aligned_cols=84 Identities=18% Similarity=0.171 Sum_probs=44.3
Q ss_pred CCCCCCcccHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHH-HHHHHHHHHhhhh-C---CCCeeeH
Q 030933 15 DSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNK-FLLKVQHAFSDLE-R---GRGYLVP 89 (169)
Q Consensus 15 D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~-~~~~~~~~F~~~D-~---~~g~i~~ 89 (169)
|.|+...+--++|......+.......-+.-+.+.|-..=+|.|=|+|..+-++ ....+.++|.... + +-|.|+
T Consensus 53 DyNr~HF~R~~eF~~~~~~l~~~~r~~FidFLerSctaEFSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlN- 131 (357)
T PLN02508 53 DYNQTHFVRNEEFKAAADKIQGPLRQIFIEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFTLMSRDEARHAGFLN- 131 (357)
T ss_pred CccccccccChhhccchhhCCHHHHHHHHHHHHhhhhhhcccchHHHHHHHhcccCChHHHHHHHHhCchhHHHHhHHH-
Confidence 444444444445544333221111112233344455555577777777776443 2357888888775 3 467665
Q ss_pred HHHHHHHHHcCCCC
Q 030933 90 DNVYEALVKIGFSL 103 (169)
Q Consensus 90 ~el~~~l~~~~~~~ 103 (169)
++|+.+|..+
T Consensus 132 ----kam~Df~l~l 141 (357)
T PLN02508 132 ----KALSDFNLAL 141 (357)
T ss_pred ----HHHHHcCccc
Confidence 5677665543
No 273
>PRK00441 argR arginine repressor; Provisional
Probab=22.33 E-value=2e+02 Score=19.25 Aligned_cols=34 Identities=15% Similarity=0.279 Sum_probs=28.5
Q ss_pred CCCeeeHHHHHHHHHHcCCCCCHHHHHHHHHhcC
Q 030933 83 GRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFD 116 (169)
Q Consensus 83 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 116 (169)
..+..+.+|+.+.|...|+.+|...+..-++...
T Consensus 15 ~~~~~~q~eL~~~L~~~G~~vSqaTisRDl~~L~ 48 (149)
T PRK00441 15 SKEIETQEELAEELKKMGFDVTQATVSRDIKELK 48 (149)
T ss_pred HcCCCcHHHHHHHHHhcCCCcCHHHHHHHHHHcC
Confidence 4678899999999999999999988877777654
No 274
>PTZ00015 histone H4; Provisional
Probab=21.45 E-value=2.2e+02 Score=17.82 Aligned_cols=77 Identities=17% Similarity=0.093 Sum_probs=47.2
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHH--HHHHHHHHhhhh-CCCCeeeHHHHHHHHHHcCCC
Q 030933 26 QLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF--LLKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFS 102 (169)
Q Consensus 26 e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~--~~~~~~~F~~~D-~~~g~i~~~el~~~l~~~~~~ 102 (169)
-.+.+++..-..++...+.+|.+......=..--|+|....+.. .+.+..+-.... .+.-+|+.+++.-+++..|.+
T Consensus 19 r~rk~~r~~i~gI~k~~IrRLarr~GvkRIS~d~y~e~r~vle~~l~~I~rdav~~aeHA~RKTVt~~DV~~AlKr~g~~ 98 (102)
T PTZ00015 19 RQKKVLRDNIRGITKGAIRRLARRGGVKRISGDIYEEVRGVLKAFLENVVRDSTAYTEYARRKTVTAMDVVYALKRQGRT 98 (102)
T ss_pred hHHHHHhhcccCCCHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCC
Confidence 44455555445677788888888654433222336666665532 234445544444 366689999999999887754
No 275
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=21.42 E-value=5.7e+02 Score=22.54 Aligned_cols=136 Identities=12% Similarity=0.105 Sum_probs=77.7
Q ss_pred HHHHHHHHHcCCCC-CCHHHHHHHHHHhcCCCCCc-ccHHHHHHHHHH------------------H-HHHHHHHhhhh-
Q 030933 24 AAQLKHAFAVGNLD-FSLSVVQQMIRMYDFDRNGT-MSFEEFVELNKF------------------L-LKVQHAFSDLE- 81 (169)
Q Consensus 24 ~~e~~~~l~~~~~~-~~~~~~~~l~~~~d~~~~~~-i~~~eF~~~~~~------------------~-~~~~~~F~~~D- 81 (169)
...|+.+-+.+... ++-..+..+|...+..++.. ++..+-+..+.. . -.+-..+..||
T Consensus 402 AmKlr~LQK~l~ldlv~ltl~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~ 481 (966)
T KOG4286|consen 402 AMKLRRLQKALCLDLLSLSLALDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDT 481 (966)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHhcccccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhccc
Confidence 33444444444443 44566677787777665443 333333332211 0 13445668889
Q ss_pred CCCCeeeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH-------------------HHHHHHH
Q 030933 82 RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFL-------------------QSARNLF 142 (169)
Q Consensus 82 ~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~l~~~-------------------~~~~~~f 142 (169)
..+|.|+.-+|+-.+-.+.-....+.+..+|+....++.. +....|...+..+ +.++..|
T Consensus 482 ~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~~sq-~~q~~l~lLL~dliqipr~lGE~aAfGgsNvepsvrsCF 560 (966)
T KOG4286|consen 482 GRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASSTSQ-CDQRRLGLLLHDLIQIPRQLGEVAAFGGSNIEPSVRSCF 560 (966)
T ss_pred CCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCchhh-HHHHHHHHHHHHHHHHHHHHhHHHhhcCCCCChHHHHHH
Confidence 5799999999988887765444566677899988755543 3344555554322 2345556
Q ss_pred hhhCCCCceeEEeehhHHHHHh
Q 030933 143 NSFDTAKQGRITLDLNQFIFCT 164 (169)
Q Consensus 143 ~~~d~~~~g~i~~~~~~~~~~~ 164 (169)
+. ..|.-++++..|+.++
T Consensus 561 ~~----v~~~pei~~~~f~dw~ 578 (966)
T KOG4286|consen 561 QF----VNNKPEIEAALFLDWM 578 (966)
T ss_pred Hh----cCCCCcchHHHHHHHh
Confidence 52 2333345777777765
No 276
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=21.40 E-value=1.8e+02 Score=16.74 Aligned_cols=32 Identities=9% Similarity=0.119 Sum_probs=20.7
Q ss_pred CeeeHHHHHHHHHHcCCCCCHHHHHHHHHhcC
Q 030933 85 GYLVPDNVYEALVKIGFSLDSPAFYTVCESFD 116 (169)
Q Consensus 85 g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 116 (169)
..-+-+|+...|...|+.+|...+..-++...
T Consensus 18 ~i~sQ~eL~~~L~~~Gi~vTQaTiSRDLkeL~ 49 (70)
T PF01316_consen 18 EISSQEELVELLEEEGIEVTQATISRDLKELG 49 (70)
T ss_dssp ---SHHHHHHHHHHTT-T--HHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHcCCCcchhHHHHHHHHcC
Confidence 35677899999999999998887766666543
No 277
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=21.35 E-value=1.9e+02 Score=19.72 Aligned_cols=15 Identities=20% Similarity=0.173 Sum_probs=7.2
Q ss_pred HHHHHHHcCCCCCCH
Q 030933 26 QLKHAFAVGNLDFSL 40 (169)
Q Consensus 26 e~~~~l~~~~~~~~~ 40 (169)
.+...|+..|...|+
T Consensus 12 ~~~~~L~~~GlR~T~ 26 (169)
T PRK11639 12 QAEKLCAQRNVRLTP 26 (169)
T ss_pred HHHHHHHHcCCCCCH
Confidence 344445555554444
No 278
>PF13592 HTH_33: Winged helix-turn helix
Probab=21.34 E-value=1.6e+02 Score=16.05 Aligned_cols=31 Identities=6% Similarity=0.196 Sum_probs=14.5
Q ss_pred eeeHHHHHHHHHH-cCCCCCHHHHHHHHHhcC
Q 030933 86 YLVPDNVYEALVK-IGFSLDSPAFYTVCESFD 116 (169)
Q Consensus 86 ~i~~~el~~~l~~-~~~~~~~~~~~~~~~~~d 116 (169)
..+..++...+.. +|...+...+..++++++
T Consensus 4 ~wt~~~i~~~I~~~fgv~ys~~~v~~lL~r~G 35 (60)
T PF13592_consen 4 RWTLKEIAAYIEEEFGVKYSPSGVYRLLKRLG 35 (60)
T ss_pred cccHHHHHHHHHHHHCCEEcHHHHHHHHHHcC
Confidence 3444444444443 344455555555555443
No 279
>PF11300 DUF3102: Protein of unknown function (DUF3102); InterPro: IPR021451 This entry is represented by Streptococcus phage 7201, Orf2. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=21.28 E-value=2.5e+02 Score=18.43 Aligned_cols=25 Identities=8% Similarity=0.258 Sum_probs=12.8
Q ss_pred ccHHHHHHHHHcCCCCCCHHHHHHHH
Q 030933 22 IAAAQLKHAFAVGNLDFSLSVVQQMI 47 (169)
Q Consensus 22 i~~~e~~~~l~~~~~~~~~~~~~~l~ 47 (169)
++.-+|..++.. .++++...+.+++
T Consensus 39 l~HGef~~Wle~-~~~~s~rtA~~~M 63 (130)
T PF11300_consen 39 LPHGEFGKWLEE-EVGYSQRTAQRFM 63 (130)
T ss_pred CCHHHHHHHHHH-HcCcCHHHHHHHH
Confidence 455566666663 3344444444443
No 280
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.23 E-value=1.7e+02 Score=20.34 Aligned_cols=48 Identities=13% Similarity=0.068 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhhhh-CCCCeeeHHHHHHHHHHcCCCCCHHHHHHHHH
Q 030933 66 LNKFLLKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCE 113 (169)
Q Consensus 66 ~~~~~~~~~~~F~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~ 113 (169)
++++.+.++++|..|| ..=-..+.+++.+++..-++--....++.++.
T Consensus 48 IL~Kr~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Avi~ 96 (179)
T TIGR00624 48 VLRKRENYRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATIA 96 (179)
T ss_pred HHHhHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHH
Confidence 4566788999999999 55566788888888887665444444544444
No 281
>PF05819 NolX: NolX protein; InterPro: IPR008718 This family consists of Rhizobium NolX and Xanthomonas HrpF proteins. The interaction between the plant pathogen Xanthomonas campestris pv. vesicatoria (strain 85-10) and its host plants is controlled by hrp genes (hypersensitive reaction and pathogenicity), which encode a type III protein secretion system. Among type III-secreted proteins are avirulence proteins, effectors involved in the induction of plant defence reactions. HrpF is dispensable for protein secretion but required for AvrBs3 recognition in planta, is thought to function as a translocator of effector proteins into the host cell []. NolX, a Glycine max (Soybean) cultivar specificity protein, is secreted by a type III secretion system (TTSS) and shows homology to HrpF. It is not known whether NolX functions at the bacterium-plant interface or acts inside the host cell. NolX is expressed in planta only during the early stages of nodule development [].; GO: 0009877 nodulation
Probab=20.10 E-value=5.1e+02 Score=21.50 Aligned_cols=121 Identities=16% Similarity=0.244 Sum_probs=71.0
Q ss_pred HHHHhhCCCC----CCcccHHHHHHHHHcC----------------------------CCCCCH-HHHHHHHHHhcCCCC
Q 030933 9 EWFDRVDSEK----TGSIAAAQLKHAFAVG----------------------------NLDFSL-SVVQQMIRMYDFDRN 55 (169)
Q Consensus 9 ~~F~~~D~~~----~g~i~~~e~~~~l~~~----------------------------~~~~~~-~~~~~l~~~~d~~~~ 55 (169)
++|..++..+ .|+|+..++..+...- ...++. ..++.++++-|. --
T Consensus 303 ~lf~AigsqgdGkcgGKI~AkDls~fs~~H~qva~y~~~qA~~Y~qnYipSD~~~~~~psvMT~nDA~RELYrYSdy-LP 381 (624)
T PF05819_consen 303 ALFYAIGSQGDGKCGGKIKAKDLSKFSSHHPQVAEYAEQQAESYTQNYIPSDSKDNAQPSVMTENDAMRELYRYSDY-LP 381 (624)
T ss_pred HHHHHhccCCCCCcCCeechhhHHHHHhcChHHHHHHHHHhhhhhhccCCCCCCCCCCCcccchhHHHHHHHHhhhc-cc
Confidence 4677777654 4789988888775420 012233 345666665443 33
Q ss_pred CcccHHHHHHHHHHH--------H---------HHHHHHhh-hhCCCCeeeHHHHHHHHHHcCCCCCHHHHHHHHHhcCC
Q 030933 56 GTMSFEEFVELNKFL--------L---------KVQHAFSD-LERGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQ 117 (169)
Q Consensus 56 ~~i~~~eF~~~~~~~--------~---------~~~~~F~~-~D~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~ 117 (169)
..++.+.|..++.-. + .=-..|+. ++...+.|+.++|.+.-.+ .+++|..++..+= .+..
T Consensus 382 K~L~~~~f~~IVdG~s~tgKcPPQViAAAqyF~~hpd~W~~l~~g~~~~v~k~dflq~ass-~m~LT~~ElkTL~-Tin~ 459 (624)
T PF05819_consen 382 KNLSLEDFKQIVDGDSKTGKCPPQVIAAAQYFVDHPDEWKQLYGGPSDKVSKEDFLQVASS-SMHLTAPELKTLD-TINS 459 (624)
T ss_pred cccCHHHHHhHhcCccccCCCCHHHHHHHHHHHhChHHHHHhcCCCccccchhHHHHHHHh-hcccChHHHHHHH-Hhhh
Confidence 568888998887310 0 11122333 3556789999999887765 4677777764432 2211
Q ss_pred C-----CCC-cccHHHHHHHH
Q 030933 118 N-----KNG-RLRLDDFISLC 132 (169)
Q Consensus 118 ~-----~~~-~i~~~eF~~~l 132 (169)
+ ++| .|+.+....+.
T Consensus 460 nqd~FFg~G~~ltrdKLa~ma 480 (624)
T PF05819_consen 460 NQDAFFGDGKELTRDKLASMA 480 (624)
T ss_pred chhhhhCCccccCHHHHHHhh
Confidence 2 455 78888776654
Done!