BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030934
(169 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2J3T|C Chain C, The Crystal Structure Of The Bet3-Trs33-Bet5-Trs23 Complex
Length = 145
Score = 123 bits (309), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 97/149 (65%), Gaps = 15/149 (10%)
Query: 22 NAHMMYVFNRNGVCLLYREWNRLLHT-LNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGN 80
H +Y+F+RNGVCL Y EW+R + ++++KLM+G+LFS++S +KM P + + G
Sbjct: 2 TVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG- 60
Query: 81 LGVPQLSGQGCSFHSFRTNTYKLSFMESPSGIKIILVTHPRTGDLRESLKYIYN-LYVEY 139
F SF+T+ YKL + E+P+GIK+++ T G +R+ L +IY+ LYVE+
Sbjct: 61 ------------FLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEF 108
Query: 140 VVKNPLYAPGTPIRSELFNTSLDQYVRTI 168
VVKNPL G ++SELF + LD YVR++
Sbjct: 109 VVKNPLCPLGQTVQSELFRSRLDSYVRSL 137
>pdb|2ZMV|A Chain A, Crystal Structure Of Synbindin
pdb|2ZMV|B Chain B, Crystal Structure Of Synbindin
Length = 227
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 62/110 (56%), Gaps = 14/110 (12%)
Query: 53 DHKLMFGLLF-SLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTNTYKLSFMESPSG 111
+ KLM +F SL ++ +++ P E+G+ G+ L T+T+KL ++ +G
Sbjct: 106 NEKLMLASMFHSLFAIGSQLSP---EQGSSGIEML----------ETDTFKLHCYQTLTG 152
Query: 112 IKIILVTHPRTGDLRESLKYIYNLYVEYVVKNPLYAPGTPIRSELFNTSL 161
IK +++ PR + L+ IY +Y ++ +KNP Y+ PIR ELF+ +L
Sbjct: 153 IKFVVLADPRQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNL 202
>pdb|2J3T|D Chain D, The Crystal Structure Of The Bet3-Trs33-Bet5-Trs23 Complex
Length = 219
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 62/110 (56%), Gaps = 14/110 (12%)
Query: 53 DHKLMFGLLF-SLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTNTYKLSFMESPSG 111
+ KLM +F SL ++ +++ P E+G+ G+ L T+T+KL ++ +G
Sbjct: 106 NEKLMLASMFHSLFAIGSQLSP---EQGSSGIEML----------ETDTFKLHCYQTLTG 152
Query: 112 IKIILVTHPRTGDLRESLKYIYNLYVEYVVKNPLYAPGTPIRSELFNTSL 161
IK +++ PR + L+ IY +Y ++ +KNP Y+ PIR ELF+ +L
Sbjct: 153 IKFVVLADPRQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNL 202
>pdb|3CUE|C Chain C, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|I Chain I, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|O Chain O, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|U Chain U, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 159
Score = 56.2 bits (134), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 66/127 (51%), Gaps = 21/127 (16%)
Query: 27 YVFNRNGVCLLYREW----NRLLHTLNAQQ---DHKLMFGLLFSLKSLTAKMDPTNAEKG 79
++F+R+ C+ REW N T+N++Q D KL++G++FSL+S+T K+ + +
Sbjct: 7 WIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSKGSVKN- 65
Query: 80 NLGVPQLSGQGCSFHSFRTNTYKLSFMESPSGIKIILVTHPRTGDLRESLKYIYN-LYVE 138
S T Y++ + SG+ +L++ + + L+YIY+ +YV+
Sbjct: 66 ------------DIRSISTGKYRVHTYCTASGLWFVLLSDFKQQSYTQVLQYIYSHIYVK 113
Query: 139 YVVKNPL 145
YV N L
Sbjct: 114 YVSNNLL 120
>pdb|3CUE|A Chain A, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|G Chain G, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|M Chain M, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|S Chain S, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 219
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 129 LKYIYNLYVEYVVKNPLYAPGTPIRSELFNTSLDQYVRTI 168
L+ +Y LY +YV+K+P Y+ PIRS LF+ + + V +
Sbjct: 179 LRKVYCLYSDYVMKDPSYSMEMPIRSNLFDEKVKKMVENL 218
>pdb|1H3Q|A Chain A, Crystal Sturcture Of Sedl At 2.4 Angstroms Resolution
Length = 140
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 97 RTNTYKLSFMESPSGIKIILVTHPRTGD-LRESLKYIYNLYVEYVVKNPLYAPGTPIRSE 155
+ N + +S + ++ I++ R D ++ +Y+LY+++ + NP Y P +PIRS
Sbjct: 66 KFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAM-NPFYEPNSPIRSS 124
Query: 156 LFNTSL 161
F+ +
Sbjct: 125 AFDRKV 130
>pdb|2J3W|A Chain A, The Crystal Structure Of The Bet3-Trs31-Sedlin Complex.
pdb|2J3W|C Chain C, The Crystal Structure Of The Bet3-Trs31-Sedlin Complex
Length = 142
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 97 RTNTYKLSFMESPSGIKIILVTHPRTGD-LRESLKYIYNLYVEYVVKNPLYAPGTPIRSE 155
+ N + +S + ++ I++ R D ++ +Y+LY+++ + NP Y P +PIRS
Sbjct: 68 KFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAM-NPFYEPNSPIRSS 126
Query: 156 LFNTSL 161
F+ +
Sbjct: 127 AFDRKV 132
>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
pdb|3IFQ|B Chain B, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
Length = 553
Score = 29.3 bits (64), Expect = 1.1, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 12/95 (12%)
Query: 44 LLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTNTYKL 103
++H +N Q D +L L L L DP K + V QLS + S +
Sbjct: 4 IVHLINYQDDAELATRALPELTKLLNDEDPVVVTKAAMIVNQLSKKEAS---------RR 54
Query: 104 SFMESPSGIKIILVTHPRTGDL---RESLKYIYNL 135
+ M SP + ++ T T DL R + ++NL
Sbjct: 55 ALMGSPQLVAAVVRTMQNTSDLDTARCTTSILHNL 89
>pdb|1ZY9|A Chain A, Crystal Structure Of Alpha-Galactosidase (Ec 3.2.1.22)
(Melibiase) (Tm1192) From Thermotoga Maritima At 2.34 A
Resolution
Length = 564
Score = 28.1 bits (61), Expect = 2.4, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 3 FFGGSEISPSPPVPTASGNNAHMMYVFNRNGVC-LLYREWNRLLHTLNAQQDHKL--MFG 59
F G +P T+ N H +V NG YR WN+ ++ L+ +D L +F
Sbjct: 264 FIPGIWTAPFSVSETSDVFNEHPDWVVKENGEPKXAYRNWNKKIYALDLSKDEVLNWLFD 323
Query: 60 LLFSLK 65
L SL+
Sbjct: 324 LFSSLR 329
>pdb|1DZN|A Chain A, Asp170ser Mutant Of Vanillyl-Alcohol Oxidase
pdb|1DZN|B Chain B, Asp170ser Mutant Of Vanillyl-Alcohol Oxidase
Length = 560
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 103 LSFMESPSGIKIILVTHPRTGDLRESLKYIYNLYVEYVVKN 143
+ M +P G + L+T P+ GDL++++ I L + ++N
Sbjct: 267 IWLMPNPGGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQN 307
>pdb|1QLT|A Chain A, Structure Of The H422a Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase
pdb|1QLT|B Chain B, Structure Of The H422a Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase
pdb|1QLU|A Chain A, Structure Of The H422a Mutant Vanillyl-Alcohol Oxidase In
Complex With Isoeugenol
pdb|1QLU|B Chain B, Structure Of The H422a Mutant Vanillyl-Alcohol Oxidase In
Complex With Isoeugenol
Length = 560
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 103 LSFMESPSGIKIILVTHPRTGDLRESLKYIYNLYVEYVVKN 143
+ M +P G + L+T P+ GDL++++ I L + ++N
Sbjct: 267 IWLMPNPGGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQN 307
>pdb|1E0Y|A Chain A, Structure Of The D170sT457E DOUBLE MUTANT OF VANILLYL-
Alcohol Oxidase
pdb|1E0Y|B Chain B, Structure Of The D170sT457E DOUBLE MUTANT OF VANILLYL-
Alcohol Oxidase
Length = 560
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 103 LSFMESPSGIKIILVTHPRTGDLRESLKYIYNLYVEYVVKN 143
+ M +P G + L+T P+ GDL++++ I L + ++N
Sbjct: 267 IWLMPNPGGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQN 307
>pdb|1E8F|A Chain A, Structure Of The H61t Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase In The Apo Form
pdb|1E8F|B Chain B, Structure Of The H61t Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase In The Apo Form
pdb|1E8G|A Chain A, Structure Of The H61t Double Mutant Of Vanillyl-Alcohol
Oxidase In Complex With Fluoro-Cresol
pdb|1E8G|B Chain B, Structure Of The H61t Double Mutant Of Vanillyl-Alcohol
Oxidase In Complex With Fluoro-Cresol
pdb|1E8H|A Chain A, Structure Of The H61t Mutant Of The Flavoenzyme Vanillyl-
Alcohol Oxidase In The Apo Form Complexed By Adp
pdb|1E8H|B Chain B, Structure Of The H61t Mutant Of The Flavoenzyme Vanillyl-
Alcohol Oxidase In The Apo Form Complexed By Adp
Length = 560
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 103 LSFMESPSGIKIILVTHPRTGDLRESLKYIYNLYVEYVVKN 143
+ M +P G + L+T P+ GDL++++ I L + ++N
Sbjct: 267 IWLMPNPGGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQN 307
>pdb|1W1M|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-alcohol
Oxidase: Glu502gly Mutant
pdb|1W1M|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-alcohol
Oxidase: Glu502gly Mutant
Length = 560
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 103 LSFMESPSGIKIILVTHPRTGDLRESLKYIYNLYVEYVVKN 143
+ M +P G + L+T P+ GDL++++ I L + ++N
Sbjct: 267 IWLMPNPRGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQN 307
>pdb|1W1J|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: The505ser Mutant
pdb|1W1J|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: The505ser Mutant
Length = 560
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 103 LSFMESPSGIKIILVTHPRTGDLRESLKYIYNLYVEYVVKN 143
+ M +P G + L+T P+ GDL++++ I L + ++N
Sbjct: 267 IWLMPNPRGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQN 307
>pdb|2VAO|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With Isoeugenol
pdb|2VAO|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With Isoeugenol
pdb|1VAO|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-alcohol
Oxidase
pdb|1VAO|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-alcohol
Oxidase
pdb|1AHU|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With P-Cresol
pdb|1AHU|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With P-Cresol
pdb|1AHV|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 2-Nitro-P-Cresol
pdb|1AHV|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 2-Nitro-P-Cresol
pdb|1AHZ|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 4-(1-Heptenyl)phenol
pdb|1AHZ|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 4-(1-Heptenyl)phenol
Length = 560
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 103 LSFMESPSGIKIILVTHPRTGDLRESLKYIYNLYVEYVVKN 143
+ M +P G + L+T P+ GDL++++ I L + ++N
Sbjct: 267 IWLMPNPRGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQN 307
>pdb|1W1K|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: Ile238thr Mutant
pdb|1W1K|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: Ile238thr Mutant
Length = 560
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 103 LSFMESPSGIKIILVTHPRTGDLRESLKYIYNLYVEYVVKN 143
+ M +P G + L+T P+ GDL++++ I L + ++N
Sbjct: 267 IWLMPNPRGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQN 307
>pdb|1W1L|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: Phe454tyr Mutant
pdb|1W1L|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: Phe454tyr Mutant
Length = 560
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 103 LSFMESPSGIKIILVTHPRTGDLRESLKYIYNLYVEYVVKN 143
+ M +P G + L+T P+ GDL++++ I L + ++N
Sbjct: 267 IWLMPNPRGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQN 307
>pdb|3L7R|A Chain A, Crystal Structure Of Mete From Streptococcus Mutans
pdb|3T0C|A Chain A, Crystal Structure Of Streptococcus Mutans Mete Complexed
With Zinc
Length = 779
Score = 27.3 bits (59), Expect = 4.1, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 106 MESPSGIKIILVTHPRTGDLRESLKYIYNLYVEYVVKNPLYAPGTPIRSELFNTSLD 162
M S K+ + +PR G+ RE K I + V KN L+A +R + L+
Sbjct: 30 MGRGSMTKVSSLGYPRLGENREWKKLIEAYWAGKVSKNDLFAGAKELRLDFLKKQLN 86
>pdb|2NQ5|A Chain A, Crystal Structure Of Methyltransferase From Streptococcus
Mutans
Length = 755
Score = 26.9 bits (58), Expect = 5.3, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 113 KIILVTHPRTGDLRESLKYIYNLYVEYVVKNPLYAPGTPIRSELFNTSLD 162
K+ + +PR G+ RE K I + V KN L+A +R + L+
Sbjct: 5 KVSSLGYPRLGENREWKKLIEAYWAGKVSKNDLFAGAKELRLDFLKKQLN 54
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,152,492
Number of Sequences: 62578
Number of extensions: 202154
Number of successful extensions: 486
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 465
Number of HSP's gapped (non-prelim): 21
length of query: 169
length of database: 14,973,337
effective HSP length: 92
effective length of query: 77
effective length of database: 9,216,161
effective search space: 709644397
effective search space used: 709644397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)