BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030934
(169 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2KMM2|TPPC1_RAT Trafficking protein particle complex subunit 1 OS=Rattus norvegicus
GN=Trappc1 PE=2 SV=1
Length = 145
Score = 123 bits (309), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 97/149 (65%), Gaps = 15/149 (10%)
Query: 22 NAHMMYVFNRNGVCLLYREWNRLLHT-LNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGN 80
H +Y+F+RNGVCL Y EW+R + ++++KLM+G+LFS++S +KM P + + G
Sbjct: 2 TVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG- 60
Query: 81 LGVPQLSGQGCSFHSFRTNTYKLSFMESPSGIKIILVTHPRTGDLRESLKYIYN-LYVEY 139
F SF+T+ YKL + E+P+GIK+++ T G +R+ L +IY+ LYVE+
Sbjct: 61 ------------FLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEF 108
Query: 140 VVKNPLYAPGTPIRSELFNTSLDQYVRTI 168
VVKNPL G ++SELF + LD YVR++
Sbjct: 109 VVKNPLCPLGQTVQSELFRSRLDSYVRSL 137
>sp|Q5NCF2|TPPC1_MOUSE Trafficking protein particle complex subunit 1 OS=Mus musculus
GN=Trappc1 PE=1 SV=1
Length = 145
Score = 123 bits (309), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 97/149 (65%), Gaps = 15/149 (10%)
Query: 22 NAHMMYVFNRNGVCLLYREWNRLLHT-LNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGN 80
H +Y+F+RNGVCL Y EW+R + ++++KLM+G+LFS++S +KM P + + G
Sbjct: 2 TVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG- 60
Query: 81 LGVPQLSGQGCSFHSFRTNTYKLSFMESPSGIKIILVTHPRTGDLRESLKYIYN-LYVEY 139
F SF+T+ YKL + E+P+GIK+++ T G +R+ L +IY+ LYVE+
Sbjct: 61 ------------FLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEF 108
Query: 140 VVKNPLYAPGTPIRSELFNTSLDQYVRTI 168
VVKNPL G ++SELF + LD YVR++
Sbjct: 109 VVKNPLCPLGQTVQSELFRSRLDSYVRSL 137
>sp|Q9Y5R8|TPPC1_HUMAN Trafficking protein particle complex subunit 1 OS=Homo sapiens
GN=TRAPPC1 PE=1 SV=1
Length = 145
Score = 121 bits (303), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 96/149 (64%), Gaps = 15/149 (10%)
Query: 22 NAHMMYVFNRNGVCLLYREWNRLLHT-LNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGN 80
H +Y+F+RNGVCL Y EW+R + ++++KLM+G+LFS++S +KM P + + G
Sbjct: 2 TVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG- 60
Query: 81 LGVPQLSGQGCSFHSFRTNTYKLSFMESPSGIKIILVTHPRTGDLRESLKYIYN-LYVEY 139
F +F+T+ YKL + E+P+GIK+++ T G +R+ L +IY+ LYVE
Sbjct: 61 ------------FLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEL 108
Query: 140 VVKNPLYAPGTPIRSELFNTSLDQYVRTI 168
VVKNPL G ++SELF + LD YVR++
Sbjct: 109 VVKNPLCPLGQTVQSELFRSRLDSYVRSL 137
>sp|Q17QI1|TPPC1_BOVIN Trafficking protein particle complex subunit 1 OS=Bos taurus
GN=TRAPPC1 PE=2 SV=1
Length = 145
Score = 121 bits (303), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 96/149 (64%), Gaps = 15/149 (10%)
Query: 22 NAHMMYVFNRNGVCLLYREWNRLLHT-LNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGN 80
H +Y+F+RNGVCL Y EW+R + ++++KLM+G+LFS++S +KM P + + G
Sbjct: 2 TVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG- 60
Query: 81 LGVPQLSGQGCSFHSFRTNTYKLSFMESPSGIKIILVTHPRTGDLRESLKYIYN-LYVEY 139
F +F+T+ YKL + E+P+GIK+++ T G +R+ L +IY+ LYVE
Sbjct: 61 ------------FLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEL 108
Query: 140 VVKNPLYAPGTPIRSELFNTSLDQYVRTI 168
VVKNPL G ++SELF + LD YVR++
Sbjct: 109 VVKNPLCPLGQTVQSELFRSRLDSYVRSL 137
>sp|Q557G3|TPPC1_DICDI Trafficking protein particle complex subunit 1 OS=Dictyostelium
discoideum GN=trappc1-1 PE=3 SV=1
Length = 142
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 87/144 (60%), Gaps = 12/144 (8%)
Query: 26 MYVFNRNGVCLLYREWNRLLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQ 85
+Y+FN++G C+ Y +WN+ + N +D KL+FG+L+SLK+ P +
Sbjct: 5 IYIFNKDGTCIYYEDWNKKKQSQNQSEDQKLLFGMLYSLKAFITSSSPKKIDDKT----- 59
Query: 86 LSGQGCSFHSFRTNTYKLSFMESPSGIKIILVTHPRTGDLRESLKYIYN-LYVEYVVKNP 144
FH ++T+TYKL + E+ S IK I+++ P DLR+ LK IY+ ++VEYV+KNP
Sbjct: 60 ------GFHCYKTSTYKLHYYETLSCIKFIIMSDPNVPDLRDDLKKIYSQIFVEYVIKNP 113
Query: 145 LYAPGTPIRSELFNTSLDQYVRTI 168
+Y GT ++ + F L+ Y++ +
Sbjct: 114 IYKHGTTVKCDTFINQLNLYLKQM 137
>sp|Q9UT70|BET5_SCHPO Transport protein particle subunit bet5 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=bet5 PE=3 SV=2
Length = 155
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 86/165 (52%), Gaps = 34/165 (20%)
Query: 24 HMMYVFNRNGVCLLYREWN----RLLHTLNAQQDH--------KLMFGLLFSLKSLTAKM 71
+ Y+++R C+ W + TL +Q + KL+FG++FSL+++
Sbjct: 4 YAFYIYSRKCECVFAHRWKPSDRNSMETLVSQLEQNSIEDDMEKLIFGVVFSLRNM---- 59
Query: 72 DPTNAEKGNLGVPQLSGQGCSFHSFRTNTYKLSFMESPSGIKIILVTHPRTGDLRESLKY 131
V +++ F S+ T+ YKL F E+P+ +++I +T+P+ L L+
Sbjct: 60 -----------VKKITADQDQFMSYTTSKYKLHFYETPTNLRLIFITNPKIDSLTHVLQQ 108
Query: 132 IY-NLYVEYVVKNPLYAPGTP------IRSELFNTSLDQYVRTIA 169
IY LYVE+VVK+PLY P I E+F +LD++VRT++
Sbjct: 109 IYTTLYVEFVVKHPLYTHVPPSAEEGGINCEIFRITLDRFVRTLS 153
>sp|Q69BT7|TPPC4_RAT Trafficking protein particle complex subunit 4 OS=Rattus norvegicus
GN=Trappc4 PE=2 SV=1
Length = 219
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 62/110 (56%), Gaps = 14/110 (12%)
Query: 53 DHKLMFGLLF-SLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTNTYKLSFMESPSG 111
+ KLM +F SL ++ +++ P E+G+ G+ L T+T+KL ++ +G
Sbjct: 106 NEKLMLASMFHSLFAIGSQLSP---EQGSSGIEML----------ETDTFKLHCFQTLTG 152
Query: 112 IKIILVTHPRTGDLRESLKYIYNLYVEYVVKNPLYAPGTPIRSELFNTSL 161
IK +++ PR + L+ IY +Y ++ +KNP Y+ PIR ELF+ +L
Sbjct: 153 IKFVVLADPRQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNL 202
>sp|Q9ES56|TPPC4_MOUSE Trafficking protein particle complex subunit 4 OS=Mus musculus
GN=Trappc4 PE=1 SV=1
Length = 219
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 62/110 (56%), Gaps = 14/110 (12%)
Query: 53 DHKLMFGLLF-SLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTNTYKLSFMESPSG 111
+ KLM +F SL ++ +++ P E+G+ G+ L T+T+KL ++ +G
Sbjct: 106 NEKLMLASMFHSLFAIGSQLSP---EQGSSGIEML----------ETDTFKLHCFQTLTG 152
Query: 112 IKIILVTHPRTGDLRESLKYIYNLYVEYVVKNPLYAPGTPIRSELFNTSL 161
IK +++ PR + L+ IY +Y ++ +KNP Y+ PIR ELF+ +L
Sbjct: 153 IKFVVLADPRQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNL 202
>sp|Q2TBL9|TPPC4_BOVIN Trafficking protein particle complex subunit 4 OS=Bos taurus
GN=TRAPPC4 PE=2 SV=1
Length = 219
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 62/110 (56%), Gaps = 14/110 (12%)
Query: 53 DHKLMFGLLF-SLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTNTYKLSFMESPSG 111
+ KLM +F SL ++ +++ P E+G+ G+ L T+T+KL ++ +G
Sbjct: 106 NEKLMLASMFHSLFAIGSQLSP---EQGSSGIEML----------ETDTFKLHCFQTLTG 152
Query: 112 IKIILVTHPRTGDLRESLKYIYNLYVEYVVKNPLYAPGTPIRSELFNTSL 161
IK +++ PR + L+ IY +Y ++ +KNP Y+ PIR ELF+ +L
Sbjct: 153 IKFVVLADPRQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNL 202
>sp|Q5R9J9|TPPC4_PONAB Trafficking protein particle complex subunit 4 OS=Pongo abelii
GN=TRAPPC4 PE=2 SV=1
Length = 219
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 62/110 (56%), Gaps = 14/110 (12%)
Query: 53 DHKLMFGLLF-SLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTNTYKLSFMESPSG 111
+ KLM +F SL ++ +++ P E+G+ G+ L T+T+KL ++ +G
Sbjct: 106 NEKLMLASMFHSLFAIGSQLSP---EQGSSGIEML----------ETDTFKLHCYQTLTG 152
Query: 112 IKIILVTHPRTGDLRESLKYIYNLYVEYVVKNPLYAPGTPIRSELFNTSL 161
IK +++ PR + L+ IY +Y ++ +KNP Y+ PIR ELF+ +L
Sbjct: 153 IKFVVLADPRQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNL 202
>sp|Q9Y296|TPPC4_HUMAN Trafficking protein particle complex subunit 4 OS=Homo sapiens
GN=TRAPPC4 PE=1 SV=1
Length = 219
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 62/110 (56%), Gaps = 14/110 (12%)
Query: 53 DHKLMFGLLF-SLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTNTYKLSFMESPSG 111
+ KLM +F SL ++ +++ P E+G+ G+ L T+T+KL ++ +G
Sbjct: 106 NEKLMLASMFHSLFAIGSQLSP---EQGSSGIEML----------ETDTFKLHCYQTLTG 152
Query: 112 IKIILVTHPRTGDLRESLKYIYNLYVEYVVKNPLYAPGTPIRSELFNTSL 161
IK +++ PR + L+ IY +Y ++ +KNP Y+ PIR ELF+ +L
Sbjct: 153 IKFVVLADPRQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNL 202
>sp|O43041|TRS23_SCHPO Transport protein particle subunit trs23 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=trs23 PE=3 SV=1
Length = 132
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 70/142 (49%), Gaps = 14/142 (9%)
Query: 24 HMMYVFNRNGVCLLYREWNRLLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGNLGV 83
H + + NR G + RE+ L ++ ++ G + + +++ ++ P G+ G+
Sbjct: 2 HALIIINRAGSLIFQREFGSSPTALTPN-EYLVLAGTIHGVHAISTQISPL---PGSSGI 57
Query: 84 PQLSGQGCSFHSFRTNTYKLSFMESPSGIKIILVTHPRTGDLRESLKYIYNLYVEYVVKN 143
L T+ + +++ +G+K +L T +T + R L+ Y LY +YV+KN
Sbjct: 58 QLLEA----------GTFNMHILQTHTGMKFVLFTEKKTTNARLQLQKFYELYSDYVLKN 107
Query: 144 PLYAPGTPIRSELFNTSLDQYV 165
P Y PI+ +LF+ L +Y+
Sbjct: 108 PFYTLEMPIKCQLFDEQLKRYI 129
>sp|Q03630|BET5_YEAST Trafficking protein particle complex subunit BET5 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=BET5 PE=1
SV=1
Length = 159
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 66/127 (51%), Gaps = 21/127 (16%)
Query: 27 YVFNRNGVCLLYREW----NRLLHTLNAQQ---DHKLMFGLLFSLKSLTAKMDPTNAEKG 79
++F+R+ C+ REW N T+N++Q D KL++G++FSL+S+T K+ + +
Sbjct: 7 WIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSKGSVKN- 65
Query: 80 NLGVPQLSGQGCSFHSFRTNTYKLSFMESPSGIKIILVTHPRTGDLRESLKYIYN-LYVE 138
S T Y++ + SG+ +L++ + + L+YIY+ +YV+
Sbjct: 66 ------------DIRSISTGKYRVHTYCTASGLWFVLLSDFKQQSYTQVLQYIYSHIYVK 113
Query: 139 YVVKNPL 145
YV N L
Sbjct: 114 YVSNNLL 120
>sp|Q54UU1|TPPC4_DICDI Trafficking protein particle complex subunit 4 OS=Dictyostelium
discoideum GN=trappc4 PE=3 SV=1
Length = 135
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 16/139 (11%)
Query: 26 MYVFNRNGVCLLYREWNRLLHTLNAQQDHKLMFGLLF-SLKSLTAKMDPTNAEKGNLGVP 84
+Y+ N+ G L+Y+ N +T + + G F SL ++ + + P
Sbjct: 6 IYILNKAGT-LIYQ--NDFGNTEKLSHNSYIRLGSTFHSLHAIASNLSP----------- 51
Query: 85 QLSGQGCSFHSFRTNTYKLSFMESPSGIKIILVTHPRTGDLRESLKYIYNLYVEYVVKNP 144
+SG T +KL ++ +GIK ++ P L E L +Y LY +YV+KNP
Sbjct: 52 -VSGSSSGIEVIETEAFKLQCFQTHTGIKFYVIADPNHQQLEELLHGVYELYTDYVLKNP 110
Query: 145 LYAPGTPIRSELFNTSLDQ 163
Y IR +LF+ L++
Sbjct: 111 FYEIEMQIRCDLFDYKLNR 129
>sp|Q03784|TRS23_YEAST Trafficking protein particle complex subunit 23 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TRS23 PE=1
SV=1
Length = 219
Score = 37.7 bits (86), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 129 LKYIYNLYVEYVVKNPLYAPGTPIRSELFNTSLDQYVRTI 168
L+ +Y LY +YV+K+P Y+ PIRS LF+ + + V +
Sbjct: 179 LRKVYCLYSDYVMKDPSYSMEMPIRSNLFDEKVKKMVENL 218
>sp|Q5M8X5|TPC2L_XENTR Trafficking protein particle complex subunit 2-like protein
OS=Xenopus tropicalis GN=trappc2l PE=2 SV=1
Length = 139
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 96 FRTNTYKLSFMESPSGIKIILV-----THPRTGDLRESLKYIYNLYVEYVVKNPLYAPGT 150
+ T YK+ + S +K ++V T R ++R + ++N Y + V+ NP Y PG
Sbjct: 62 YPTEDYKVYGYVTNSKVKFVMVVDSSNTSLRDNEIRSMFRKLHNSYTD-VMCNPFYNPGD 120
Query: 151 PIRSELFNTSL 161
PI+S F+ ++
Sbjct: 121 PIQSRAFDNTV 131
>sp|F1SRI0|TPPC2_PIG Trafficking protein particle complex subunit 2 OS=Sus scrofa
GN=TRAPPC2 PE=2 SV=2
Length = 140
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 97 RTNTYKLSFMESPSGIKIILVTHPRTGD-LRESLKYIYNLYVEYVVKNPLYAPGTPIRSE 155
+ N + +S + ++ I++ R D ++ +Y+LY+++ + NP Y P +PIRS
Sbjct: 66 KFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAM-NPFYEPNSPIRSS 124
Query: 156 LFNTSL 161
F+ +
Sbjct: 125 AFDRKV 130
>sp|Q3T0F2|TPPC2_BOVIN Trafficking protein particle complex subunit 2 OS=Bos taurus
GN=TRAPPC2 PE=2 SV=1
Length = 140
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 97 RTNTYKLSFMESPSGIKIILVTHPRTGD-LRESLKYIYNLYVEYVVKNPLYAPGTPIRSE 155
+ N + +S + ++ I++ R D ++ +Y+LY+++ + NP Y P +PIRS
Sbjct: 66 KFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAM-NPFYEPNSPIRSS 124
Query: 156 LFNTSL 161
F+ +
Sbjct: 125 AFDRKV 130
>sp|Q9CQP2|TPPC2_MOUSE Trafficking protein particle complex subunit 2 OS=Mus musculus
GN=Trappc2 PE=1 SV=1
Length = 140
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 97 RTNTYKLSFMESPSGIKIILVTHPRTGD-LRESLKYIYNLYVEYVVKNPLYAPGTPIRSE 155
+ N + +S + ++ I++ R D ++ +Y+LY+++ + NP Y P +PIRS
Sbjct: 66 KFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAM-NPFYEPNSPIRSS 124
Query: 156 LFNTSL 161
F+ +
Sbjct: 125 AFDRKV 130
>sp|E2QV03|TPPC2_CANFA Trafficking protein particle complex subunit 2 OS=Canis familiaris
GN=TRAPPC2 PE=3 SV=1
Length = 140
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 97 RTNTYKLSFMESPSGIKIILVTHPRTGD-LRESLKYIYNLYVEYVVKNPLYAPGTPIRSE 155
+ N + +S + ++ I++ R D ++ +Y+LY+++ + NP Y P +PIRS
Sbjct: 66 KFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFAM-NPFYEPNSPIRSS 124
Query: 156 LFNTSL 161
F+ +
Sbjct: 125 AFDRKV 130
>sp|Q5RES6|TPPC2_PONAB Trafficking protein particle complex subunit 2 OS=Pongo abelii
GN=TRAPPC2 PE=2 SV=1
Length = 140
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 97 RTNTYKLSFMESPSGIKIILVTHPRTGD-LRESLKYIYNLYVEYVVKNPLYAPGTPIRSE 155
+ N + +S + ++ I++ R D ++ +Y+LY+++ + NP Y P +PIRS
Sbjct: 66 KFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFSM-NPFYEPNSPIRSS 124
Query: 156 LFNTSL 161
F+ +
Sbjct: 125 AFDRKV 130
>sp|D3ZVF4|TPPC2_RAT Trafficking protein particle complex subunit 2 OS=Rattus norvegicus
GN=Trappc2 PE=3 SV=1
Length = 140
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 97 RTNTYKLSFMESPSGIKIILVTHPRTGD-LRESLKYIYNLYVEYVVKNPLYAPGTPIRSE 155
+ N + +S + +++I++ R D ++ +Y+LY+++ + NP Y P +PIRS
Sbjct: 66 KFNEWFVSAFVTAGHMRLIMLHDVRQEDGIKNFFTDVYDLYIKFAM-NPFYEPNSPIRST 124
Query: 156 LF 157
F
Sbjct: 125 AF 126
>sp|P0DI82|TPC2B_HUMAN Trafficking protein particle complex subunit 2 protein TRAPPC2P1
OS=Homo sapiens GN=TRAPPC2P1 PE=1 SV=1
Length = 140
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 97 RTNTYKLSFMESPSGIKIILVTHPRTGD-LRESLKYIYNLYVEYVVKNPLYAPGTPIRSE 155
+ N + +S + ++ I++ R D ++ +Y+LY+++ + NP Y P +PIRS
Sbjct: 66 KFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSM-NPFYEPNSPIRSS 124
Query: 156 LFNTSL 161
F+ +
Sbjct: 125 AFDRKV 130
>sp|P0DI81|TPC2A_HUMAN Trafficking protein particle complex subunit 2 OS=Homo sapiens
GN=TRAPPC2 PE=1 SV=1
Length = 140
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 97 RTNTYKLSFMESPSGIKIILVTHPRTGD-LRESLKYIYNLYVEYVVKNPLYAPGTPIRSE 155
+ N + +S + ++ I++ R D ++ +Y+LY+++ + NP Y P +PIRS
Sbjct: 66 KFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSM-NPFYEPNSPIRSS 124
Query: 156 LFNTSL 161
F+ +
Sbjct: 125 AFDRKV 130
>sp|Q9USZ5|TRS20_SCHPO Transport protein particle 20 kDa subunit OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=trs20 PE=3 SV=1
Length = 136
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 6/63 (9%)
Query: 108 SPSGIKIILVTHPRTGD-LRESLKYIYNLYVEYVVKNPLYAPGTPIRSELFNTSLDQYVR 166
+PS ++ +L+ ++ D ++ + ++ LY++ + +P Y P PIRS+ F D VR
Sbjct: 75 TPSNMRFMLLHQNQSADNIKLFFQELHELYIK-TLMSPFYQPNQPIRSQAF----DLKVR 129
Query: 167 TIA 169
+IA
Sbjct: 130 SIA 132
>sp|B2RYU6|TPC2L_RAT Trafficking protein particle complex subunit 2-like protein
OS=Rattus norvegicus GN=Trappc2l PE=2 SV=1
Length = 139
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 98 TNTYKLSFMESPSGIKIILV-----THPRTGDLRESLKYIYNLYVEYVVKNPLYAPGTPI 152
T YK+ + S +K ++V T R ++R + ++N Y + V+ NP Y PG I
Sbjct: 64 TEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTD-VMCNPFYNPGDRI 122
Query: 153 RSELFNT 159
+S F+T
Sbjct: 123 QSRAFDT 129
>sp|Q9JME7|TPC2L_MOUSE Trafficking protein particle complex subunit 2-like protein OS=Mus
musculus GN=Trappc2l PE=2 SV=1
Length = 139
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 98 TNTYKLSFMESPSGIKIILV-----THPRTGDLRESLKYIYNLYVEYVVKNPLYAPGTPI 152
T YK+ + S +K ++V T R ++R + ++N Y + V+ NP Y PG I
Sbjct: 64 TEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTD-VMCNPFYNPGDRI 122
Query: 153 RSELFNT 159
+S F+T
Sbjct: 123 QSRAFDT 129
>sp|B5FXJ6|TPC2L_TAEGU Trafficking protein particle complex subunit 2-like protein
OS=Taeniopygia guttata GN=TRAPPC2L PE=2 SV=1
Length = 139
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 98 TNTYKLSFMESPSGIKIILV-----THPRTGDLRESLKYIYNLYVEYVVKNPLYAPGTPI 152
T YK+ + S +K ++V T R ++R + ++N Y + ++ NP Y PG I
Sbjct: 64 TEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTD-IMCNPFYNPGDRI 122
Query: 153 RSELFNTSLD 162
S F+T ++
Sbjct: 123 HSRAFDTMVN 132
>sp|A6H7F7|TPC2L_BOVIN Trafficking protein particle complex subunit 2-like protein OS=Bos
taurus GN=TRAPPC2L PE=2 SV=1
Length = 139
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 98 TNTYKLSFMESPSGIKIILV-----THPRTGDLRESLKYIYNLYVEYVVKNPLYAPGTPI 152
T YK+ + S +K ++V T R ++R + ++N Y + V+ NP Y PG I
Sbjct: 64 TEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTD-VMCNPFYNPGDRI 122
Query: 153 RSELFN 158
+S F+
Sbjct: 123 QSRAFD 128
>sp|P30998|PLAK_XENLA Junction plakoglobin OS=Xenopus laevis GN=jup PE=2 SV=1
Length = 738
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 44 LLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTNTYKL 103
++H +N Q D +L + L L DP K ++ V QLS + S +
Sbjct: 123 IMHLINYQDDAELATRAIPELTKLLNDEDPMVVNKASMIVNQLSKKEAS---------RK 173
Query: 104 SFMESPSGIKIILVTHPRTGDL---RESLKYIYNL 135
+ M+SP + I+ T T D+ R + ++NL
Sbjct: 174 ALMQSPQIVAAIVRTMQHTSDMDTARCTTSILHNL 208
>sp|B5XGE7|TPC2L_SALSA Trafficking protein particle complex subunit 2-like protein
OS=Salmo salar GN=trappc2l PE=2 SV=1
Length = 139
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 98 TNTYKLSFMESPSGIKIILV-----THPRTGDLRESLKYIYNLYVEYVVKNPLYAPGTPI 152
T YK+ + S +K ++V T R ++R + ++N + + V+ NP Y PG I
Sbjct: 64 TEDYKVYGYVTNSKVKFVIVVDSSNTSLRDNEIRSMFRKLHNSFTD-VMCNPFYNPGDTI 122
Query: 153 RSELFNT 159
+S+ F++
Sbjct: 123 QSKAFDS 129
>sp|Q16706|MA2A1_HUMAN Alpha-mannosidase 2 OS=Homo sapiens GN=MAN2A1 PE=1 SV=2
Length = 1144
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 14/131 (10%)
Query: 36 LLYREWNRLLHTLNAQQDHK--LMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCSF 93
L ++ + +L +N+Q K + FG L K D T +KG P LSG ++
Sbjct: 437 LQFKNYQQLFDYMNSQSKFKVKIQFGTLSDFFDALDKADETQRDKGQSMFPVLSGDFFTY 496
Query: 94 HSFRTNTYKLSFMESP--SGIKIILVTHPRTGD------LRESLKYIYNLYVEYVVKNPL 145
+ + F P + I+ +H R + LR++ KY N ++ + L
Sbjct: 497 ADRDDHYWSGYFTSRPFYKRMDRIMESHLRAAEILYYFALRQAHKYKINKFLS----SSL 552
Query: 146 YAPGTPIRSEL 156
Y T R L
Sbjct: 553 YTALTEARRNL 563
>sp|Q4FZU1|COQ4_RAT Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial
OS=Rattus norvegicus GN=Coq4 PE=2 SV=1
Length = 265
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 1 MQFFGGSEISPSPPVPTASGNNAHMMYVFNRNGVCLLYREWNRLLHTL 48
++F +++SP PT ++ + YV R YRE + +LHTL
Sbjct: 128 LRFLNANKVSPDTRAPTRFVDDEELAYVIQR------YREVHDMLHTL 169
>sp|O85057|LIHY_GEOSE Limonene hydroxylase OS=Geobacillus stearothermophilus PE=1 SV=1
Length = 543
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 10/55 (18%)
Query: 82 GVPQLSGQGCSFHSFRTNTYKLSFMESPSGIKIIL--VTHPRTGDLRESLKYIYN 134
G+ + GQ S NTY SGI++IL + H R+ D ++ L Y+YN
Sbjct: 30 GMKKRYGQDTVISSVMANTY--------SGIQMILEAIVHLRSTDRKKILNYLYN 76
>sp|Q88UI3|Y2503_LACPL Putative sugar uptake protein lp_2503 OS=Lactobacillus plantarum
(strain ATCC BAA-793 / NCIMB 8826 / WCFS1) GN=lp_2503
PE=3 SV=1
Length = 285
Score = 29.6 bits (65), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 9 ISPSPPVPTASGNNAHMMYVFNRNGVCLLYREWNRLLHTLNAQQDHKLMFGLLFSLKSLT 68
IS + P+ T M V N LL+ EW+ ++ + + L+ G + L SLT
Sbjct: 84 ISRTTPISTG------MQLVANALAGVLLFNEWHGNMYWIGSASVIVLIAGAV--LTSLT 135
Query: 69 AKMDPTNAEKGNLGV 83
K DP + N GV
Sbjct: 136 DKTDPNRSASENWGV 150
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,717,580
Number of Sequences: 539616
Number of extensions: 2592214
Number of successful extensions: 4949
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 4915
Number of HSP's gapped (non-prelim): 38
length of query: 169
length of database: 191,569,459
effective HSP length: 109
effective length of query: 60
effective length of database: 132,751,315
effective search space: 7965078900
effective search space used: 7965078900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)