Query 030934
Match_columns 169
No_of_seqs 129 out of 535
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 06:46:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030934.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030934hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04099 Sybindin: Sybindin-li 100.0 1.7E-45 3.6E-50 284.4 17.5 138 23-167 1-142 (142)
2 KOG3368 Transport protein part 100.0 5.9E-43 1.3E-47 264.0 15.6 136 21-169 1-140 (140)
3 KOG3369 Transport protein part 100.0 3.1E-39 6.6E-44 254.3 13.4 134 21-168 1-198 (199)
4 COG5122 TRS23 Transport protei 100.0 1.8E-36 3.8E-41 224.2 11.1 134 21-168 1-134 (134)
5 PF04628 Sedlin_N: Sedlin, N-t 99.9 1.6E-26 3.5E-31 176.1 13.1 125 28-167 1-132 (132)
6 COG5603 TRS20 Subunit of TRAPP 99.9 5.1E-24 1.1E-28 158.6 10.3 129 25-168 4-135 (136)
7 KOG3487 TRAPP 20 K subunit [In 99.9 9E-24 2E-28 159.0 10.7 130 25-168 4-136 (139)
8 KOG3444 Uncharacterized conser 99.7 4.3E-17 9.3E-22 119.9 10.9 114 23-149 2-120 (121)
9 PF01217 Clat_adaptor_s: Clath 95.2 0.79 1.7E-05 34.6 12.2 91 23-139 2-94 (141)
10 PF13774 Longin: Regulated-SNA 93.8 0.65 1.4E-05 31.9 8.1 44 94-138 17-62 (83)
11 KOG0861 SNARE protein YKT6, sy 93.5 1 2.2E-05 36.5 9.5 97 21-136 1-101 (198)
12 PF03164 Mon1: Trafficking pro 92.4 3.6 7.8E-05 37.0 12.6 83 25-134 13-97 (415)
13 PF08217 DUF1712: Fungal domai 82.8 14 0.00029 35.1 10.2 111 33-166 17-136 (604)
14 KOG2740 Clathrin-associated pr 59.4 52 0.0011 29.6 7.6 92 23-140 2-95 (418)
15 PF08253 Leader_Erm: Erm Leade 59.3 7.9 0.00017 19.9 1.5 11 21-31 1-11 (19)
16 KOG0936 Clathrin adaptor compl 51.3 1.1E+02 0.0025 24.3 7.6 38 23-64 2-39 (182)
17 PF03259 Robl_LC7: Roadblock/L 50.1 52 0.0011 21.9 5.0 41 23-71 15-55 (91)
18 COG3721 HugX Putative heme iro 49.9 37 0.0008 27.1 4.6 46 19-71 129-174 (176)
19 PF13585 CHU_C: C-terminal dom 44.9 21 0.00046 24.8 2.4 21 20-40 25-45 (87)
20 COG2122 Uncharacterized conser 41.9 61 0.0013 27.4 5.0 52 115-166 25-79 (256)
21 KOG0859 Synaptobrevin/VAMP-lik 40.8 1.9E+02 0.0041 24.0 7.6 40 94-134 44-85 (217)
22 PF07013 DUF1314: Protein of u 38.3 38 0.00083 27.2 3.2 24 92-115 60-83 (177)
23 PHA03371 circ protein; Provisi 38.1 34 0.00075 28.7 3.0 25 91-115 82-106 (240)
24 KOG2635 Medium subunit of clat 37.4 3.4E+02 0.0075 25.2 10.3 75 21-123 1-75 (512)
25 KOG0862 Synaptobrevin/VAMP-lik 35.6 2.6E+02 0.0056 23.3 8.3 84 64-164 37-126 (216)
26 PF08800 VirE_N: VirE N-termin 35.5 1.4E+02 0.003 22.5 5.8 23 100-122 57-81 (136)
27 PF07599 DUF1563: Protein of u 32.0 59 0.0013 19.9 2.6 20 126-145 11-30 (43)
28 PF03288 Pox_D5: Poxvirus D5 p 27.8 96 0.0021 20.9 3.5 34 130-166 25-58 (86)
29 PF10407 Cytokin_check_N: Cdc1 25.9 78 0.0017 21.8 2.7 24 112-136 3-26 (73)
30 COG3260 Ni,Fe-hydrogenase III 22.4 1.3E+02 0.0028 23.5 3.6 40 96-135 34-73 (148)
31 PF14945 LLC1: Normal lung fun 21.8 56 0.0012 24.8 1.4 23 9-38 70-94 (121)
32 KOG1382 Multiple inositol poly 20.9 79 0.0017 29.2 2.4 54 6-73 48-101 (467)
33 PF11373 DUF3175: Protein of u 20.0 5.4 0.00012 28.4 -4.1 23 14-37 44-66 (86)
34 COG5143 SNC1 Synaptobrevin/VAM 20.0 1.5E+02 0.0034 24.1 3.7 51 58-123 26-78 (190)
No 1
>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses. Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.
Probab=100.00 E-value=1.7e-45 Score=284.35 Aligned_cols=138 Identities=44% Similarity=0.821 Sum_probs=104.8
Q ss_pred eEEEEEEccCCceeeeeccccccc---CCChhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcCCCCCcceeEEeeC
Q 030934 23 AHMMYVFNRNGVCLLYREWNRLLH---TLNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTN 99 (169)
Q Consensus 23 iys~~Iink~g~~Iy~~ef~~~~~---~~~~~~e~~ll~g~lhSL~~i~~klsp~~~~~~~~g~~~~~~~~~~~~~~~T~ 99 (169)
||+||||||+|+|||+++|++... .....||.++|+|++|||++|+.||+|.....+.. ..++|++++|+
T Consensus 1 IyslyI~nr~G~lIy~~~~~~~~~~~~~~~~~ne~~ll~g~l~sl~~i~~klsp~~~~~~~~-------~~~g~~~~~T~ 73 (142)
T PF04099_consen 1 IYSLYIFNRSGGLIYYREWNRSKNEGQPKLSSNEYKLLAGMLHSLKAIASKLSPVDSKPNEP-------GSSGFESFETD 73 (142)
T ss_dssp EEEEEEE-TTS-EEEEEETSSSS--E-SSSCHHHHHHHHHHHHHHHHHHHHT-SSSSSS-SS-------S--SEEEEEES
T ss_pred CeEEEEEeCCcceeeehhhCCCCccccCCCChhHHHHHHhhHHHHHHHHHHhCCCCcccccc-------cceeEEEEEeC
Confidence 799999999999999999997541 12345889999999999999999999965432100 02579999999
Q ss_pred CeEEEEEecCCceEEEEEeCCCChhH-HHHHHHHHHHHHHHHhcCCCCCCCCCccchhHHHHHHHHHHh
Q 030934 100 TYKLSFMESPSGIKIILVTHPRTGDL-RESLKYIYNLYVEYVVKNPLYAPGTPIRSELFNTSLDQYVRT 167 (169)
Q Consensus 100 ~ykl~~~~T~TgiKFvl~td~~~~~~-~~~l~~iy~lYv~~v~kNPfy~~~~pI~s~~F~~~v~~~~~~ 167 (169)
+||+|||||+||+||||+||++++++ ..+++.+|++|+|||+|||||++||||+|++||++|++++++
T Consensus 74 ~yklh~~eT~TGlKFvl~td~~~~~~~~~l~~~~~~lY~dyV~KNPfy~~~~pI~~~lF~~~l~~~~~~ 142 (142)
T PF04099_consen 74 TYKLHCFETPTGLKFVLITDPNVPSLRDELLRIYYELYVDYVVKNPFYSLEMPIRCELFDTKLDQYVKS 142 (142)
T ss_dssp S-EEEEEE-TTS-EEEEEE-TTCCHCHHHHHHHHHHHHHHHHHS-TTS-TTS----HHHHHHHHHHHHC
T ss_pred CEEEEEEEcCcCcEEEEEecCCCccHHHHHHHHHHHHHHHHHhhCCCCCCCCcEehHHHHHHHHHHHhC
Confidence 99999999999999999999998554 566778888999999999999999999999999999999974
No 2
>KOG3368 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.9e-43 Score=263.96 Aligned_cols=136 Identities=52% Similarity=1.043 Sum_probs=126.9
Q ss_pred ceeEEEEEEccCCceeeeecccccccC-CChhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcCCCCCcceeEEeeC
Q 030934 21 NNAHMMYVFNRNGVCLLYREWNRLLHT-LNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTN 99 (169)
Q Consensus 21 m~iys~~Iink~g~~Iy~~ef~~~~~~-~~~~~e~~ll~g~lhSL~~i~~klsp~~~~~~~~g~~~~~~~~~~~~~~~T~ 99 (169)
|+||+||||||+|+|||++||+++++. ...++|+|+++|+++||+.|++||+|.+.. .+|.+|.|+
T Consensus 1 Mtiy~~yIFdR~g~Cl~y~EW~r~~~s~~~~eee~KL~yGmlFSlkS~v~Kls~~d~k-------------~~f~sy~Ts 67 (140)
T KOG3368|consen 1 MTIYNFYIFDRNGVCLFYREWNRTKQSGIPNEEEAKLMYGMLFSLKSFVSKLSPGDVK-------------DGFLSYKTS 67 (140)
T ss_pred CeEEEEEEEcCCccEEEehhcccccccCCchhHHHHHHHHHHhhHHHHHHhcCCCCcc-------------cCeeEEeec
Confidence 899999999999999999999987754 345567999999999999999999997652 359999999
Q ss_pred CeEEEEEecCCceEEEEEeCCCChhHHHHHHHHHH-HHHHHHhcCCCCC--CCCCccchhHHHHHHHHHHhcC
Q 030934 100 TYKLSFMESPSGIKIILVTHPRTGDLRESLKYIYN-LYVEYVVKNPLYA--PGTPIRSELFNTSLDQYVRTIA 169 (169)
Q Consensus 100 ~ykl~~~~T~TgiKFvl~td~~~~~~~~~l~~iy~-lYv~~v~kNPfy~--~~~pI~s~~F~~~v~~~~~~~~ 169 (169)
.||+|+||||||+||||+||+++.++|++|++||+ +||+||+|||+|+ +++||+|+.|...++++++++|
T Consensus 68 ~YklhfyeTptglk~vl~Tdpk~~~ir~vLq~IYs~lyVE~Vvknpl~~~~~~~~i~~E~fr~~ld~~vrsl~ 140 (140)
T KOG3368|consen 68 KYKLHFYETPTGLKFVLNTDPKAGSIRDVLQYIYSHLYVEYVVKNPLYTYDPGSPIRSELFRKILDRFVRSLP 140 (140)
T ss_pred eeEEEEEEcCCCcEEEEecCCCcccHHHHHHHHHHHHHHHHHHcCcccccCCCCccchHHHHHHHHhhhccCC
Confidence 99999999999999999999999999999999999 9999999999999 9999999999999999999875
No 3
>KOG3369 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.1e-39 Score=254.27 Aligned_cols=134 Identities=25% Similarity=0.521 Sum_probs=121.1
Q ss_pred ceeEEEEEEccCCceeeeeccccc--------------------------------------------------------
Q 030934 21 NNAHMMYVFNRNGVCLLYREWNRL-------------------------------------------------------- 44 (169)
Q Consensus 21 m~iys~~Iink~g~~Iy~~ef~~~-------------------------------------------------------- 44 (169)
|.|++++||||+|++||++++..+
T Consensus 1 maI~~~~IINKsGgLIfq~e~~~~~~e~et~d~~l~~~~~~~vvaf~~kdgik~~~~~~~vNg~~v~g~~~~~Gl~~~~~ 80 (199)
T KOG3369|consen 1 MAIESLFIINKSGGLIFQREFGNPRQELETFDLLLLASDLKVVVAFGSKDGIKVGHLVQAVNGENVNGYILYDGLSSPRN 80 (199)
T ss_pred CceEEEEEEecCCcEEEEeecCCccccccchhhhhhhcccceeEEeecccccchhheeeeecccccccceecccccCccc
Confidence 789999999999999999999811
Q ss_pred --------ccCCChhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcCCCCCcceeEEeeCCeEEEEEecCCceEEEE
Q 030934 45 --------LHTLNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTNTYKLSFMESPSGIKIIL 116 (169)
Q Consensus 45 --------~~~~~~~~e~~ll~g~lhSL~~i~~klsp~~~~~~~~g~~~~~~~~~~~~~~~T~~ykl~~~~T~TgiKFvl 116 (169)
.++.+ .||.+.|++++||+++|+++++|...+ .|++.++|++|++|||+|.||+|||+
T Consensus 81 ypv~~~f~~p~~t-tNEkL~las~fhsl~aI~~qlsp~~ks-------------SGie~LetdtF~l~~~QTlTG~KFVv 146 (199)
T KOG3369|consen 81 YPVNGKFGRPKLT-TNEKLILASSFHSLFAISTQLSPEPKS-------------SGIEVLETDTFTLHIFQTLTGTKFVV 146 (199)
T ss_pred cccccccCCCccc-ccchhhhhhhhcchhheeeccCCCCCC-------------CceEEEEeccEEEEEEEccCCcEEEE
Confidence 01123 478999999999999999999998764 25789999999999999999999999
Q ss_pred EeCCCChhHHHHHHHHHHHHHHHHhcCCCCCCCCCccchhHHHHHHHHHHhc
Q 030934 117 VTHPRTGDLRESLKYIYNLYVEYVVKNPLYAPGTPIRSELFNTSLDQYVRTI 168 (169)
Q Consensus 117 ~td~~~~~~~~~l~~iy~lYv~~v~kNPfy~~~~pI~s~~F~~~v~~~~~~~ 168 (169)
++++....++.+|++||++|.|||+|||||+++|||||++||++|+.++.+.
T Consensus 147 is~~~~~~aD~lLrKiYelYsDyvlKNPfYSlEMPIRc~lFDe~lk~~le~~ 198 (199)
T KOG3369|consen 147 IAEPGTQGADSLLRKIYELYSDYVLKNPFYSLEMPIRCELFDEKLKFLLESA 198 (199)
T ss_pred EecCCchhHHHHHHHHHHHHHHHhhcCCccCcccceeHHHhhHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999998764
No 4
>COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.8e-36 Score=224.16 Aligned_cols=134 Identities=22% Similarity=0.440 Sum_probs=122.1
Q ss_pred ceeEEEEEEccCCceeeeecccccccCCChhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcCCCCCcceeEEeeCC
Q 030934 21 NNAHMMYVFNRNGVCLLYREWNRLLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTNT 100 (169)
Q Consensus 21 m~iys~~Iink~g~~Iy~~ef~~~~~~~~~~~e~~ll~g~lhSL~~i~~klsp~~~~~~~~g~~~~~~~~~~~~~~~T~~ 100 (169)
|.|..|+||||+|++||+|||.....+.++ ||++.|+|++||+++|+.|++|-..+ .+.+.+.+++
T Consensus 1 mave~~~iINksGglifqref~~~et~lns-neyLiLastlhgV~aI~tq~~p~~gs-------------sg~~~l~~~~ 66 (134)
T COG5122 1 MAVEQFFIINKSGGLIFQREFGEGETELNS-NEYLILASTLHGVSAILTQTIPLPGS-------------SGRLVLYFRN 66 (134)
T ss_pred CceeEEEEEecCCcEEEEEeccCCccccCc-ccEEEEeechhhhhhhhhhcccCCCC-------------CceEEEEecc
Confidence 789999999999999999999876656666 78999999999999999999996543 2468888999
Q ss_pred eEEEEEecCCceEEEEEeCCCChhHHHHHHHHHHHHHHHHhcCCCCCCCCCccchhHHHHHHHHHHhc
Q 030934 101 YKLSFMESPSGIKIILVTHPRTGDLRESLKYIYNLYVEYVVKNPLYAPGTPIRSELFNTSLDQYVRTI 168 (169)
Q Consensus 101 ykl~~~~T~TgiKFvl~td~~~~~~~~~l~~iy~lYv~~v~kNPfy~~~~pI~s~~F~~~v~~~~~~~ 168 (169)
+.++.|+|.||+|||++++.+..+.+--++++|++|+|||+|||||+++|||+|.+||++|++++.++
T Consensus 67 f~m~I~qT~TG~kFV~~~~k~t~na~~ql~kiY~lYsdYV~knPfys~EMPI~c~lFde~lkrm~e~~ 134 (134)
T COG5122 67 FVMTIFQTTTGTKFVFVAEKRTVNALFQLQKIYSLYSDYVTKNPFYSPEMPIQCSLFDEHLKRMFEGH 134 (134)
T ss_pred EEEEEEEecCCcEEEEEecCCchhHHHHHHHHHHHHHHHhhcCCCCCcccceehhhhhHHHHHHhcCC
Confidence 99999999999999999999988888889999999999999999999999999999999999998754
No 5
>PF04628 Sedlin_N: Sedlin, N-terminal conserved region; InterPro: IPR006722 Sedlin is a 140 amino-acid protein with a putative role in endoplasmic reticulum-to-Golgi transport. Several missense mutations and deletion mutations in the SEDL gene, which result in protein truncation by frame shift, are responsible for spondyloepiphyseal dysplasia tarda, a progressive skeletal disorder (OMIM:313400). [].; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005622 intracellular; PDB: 3PR6_A 2J3W_A 1H3Q_A.
Probab=99.94 E-value=1.6e-26 Score=176.12 Aligned_cols=125 Identities=24% Similarity=0.366 Sum_probs=93.2
Q ss_pred EEccCCceeeeecccccccCCChhhhHHHHHHHHH-HHHHHHHhcCCCCCCCCCCCCCcCCCCCcce-eEEeeCCeEEEE
Q 030934 28 VFNRNGVCLLYREWNRLLHTLNAQQDHKLMFGLLF-SLKSLTAKMDPTNAEKGNLGVPQLSGQGCSF-HSFRTNTYKLSF 105 (169)
Q Consensus 28 Iink~g~~Iy~~ef~~~~~~~~~~~e~~ll~g~lh-SL~~i~~klsp~~~~~~~~g~~~~~~~~~~~-~~~~T~~ykl~~ 105 (169)
|||++++|||.++|...+...+..+..+ +..++| |||.|.+++..... .+.+ ..+.+++|++++
T Consensus 1 IIg~~n~PLy~~~~~~~~~~~~~~~~~l-~~~~~h~sLD~iee~~~~~~~-------------~~yLg~l~~~~~~~vyg 66 (132)
T PF04628_consen 1 IIGPNNNPLYIRSFPSEKESSSSDARHL-YQFIAHSSLDVIEEKLWKSSS-------------DMYLGLLDPFEDYKVYG 66 (132)
T ss_dssp EE-TTS-EEEEEEE--ST-CGHHHHHHH-HHHHHHHHHHHHHHCCHCSSS-------------CSEEEEEEEETTEEEEE
T ss_pred CCCCCCcceEEEecCCCcccccchHHHH-HHHHHHHHHHHHHHHHhhccc-------------ccccCceehhhhHHHHh
Confidence 8999999999999986543221112344 555666 89999888876111 1223 456789999999
Q ss_pred EecCCceEEEEEeC-----CCChhHHHHHHHHHHHHHHHHhcCCCCCCCCCccchhHHHHHHHHHHh
Q 030934 106 MESPSGIKIILVTH-----PRTGDLRESLKYIYNLYVEYVVKNPLYAPGTPIRSELFNTSLDQYVRT 167 (169)
Q Consensus 106 ~~T~TgiKFvl~td-----~~~~~~~~~l~~iy~lYv~~v~kNPfy~~~~pI~s~~F~~~v~~~~~~ 167 (169)
|+|+||+||||+++ .+.+++|.+|++||++|++++| ||||++++||+|+.|+++|++++++
T Consensus 67 yvT~t~~Kfvl~~~~~~~~~~d~~ik~fF~~vh~~Y~~~~~-NPF~~~~~~I~S~~Fd~~v~~l~~k 132 (132)
T PF04628_consen 67 YVTNTGIKFVLVHDMSDNSIRDEDIKQFFKEVHELYVKALC-NPFYQPGTPIKSPKFDSRVRALAKK 132 (132)
T ss_dssp EETTT--EEEEEECGGG-S--HHHHHHHHHHHHHHHHHHHT-STTCGCT-HHHHHHHHHHHHHHHHH
T ss_pred hhccCceeEEEEEecccCCcchHHHHHHHHHHHHHHHHHcc-CCCCCCCCCcCCHHHHHHHHHHhcC
Confidence 99999999999998 3467899999999999999887 9999999999999999999999975
No 6
>COG5603 TRS20 Subunit of TRAPP, an ER-Golgi tethering complex [Cell motility and secretion]
Probab=99.91 E-value=5.1e-24 Score=158.55 Aligned_cols=129 Identities=18% Similarity=0.350 Sum_probs=101.4
Q ss_pred EEEEEccCCceeeeecccccccCCChhhhHHHH-HHHHHHHHHHHHhcCCCCCCCCCCCCCcCCCCCcceeEEe-eCCeE
Q 030934 25 MMYVFNRNGVCLLYREWNRLLHTLNAQQDHKLM-FGLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFR-TNTYK 102 (169)
Q Consensus 25 s~~Iink~g~~Iy~~ef~~~~~~~~~~~e~~ll-~g~lhSL~~i~~klsp~~~~~~~~g~~~~~~~~~~~~~~~-T~~yk 102 (169)
+++||++.++|+|+++|....++... +.-++| ..++||.-.|...+.|.-. .+++.+++ ..+-+
T Consensus 4 y~aIIg~KdnpVYe~e~~~~n~~~d~-~~~~~ln~fiihaSlDiv~~lqwsvN-------------~~Y~~~~d~f~~l~ 69 (136)
T COG5603 4 YLAIIGEKDNPVYEREYDPINKTSDG-EYCRLLNQFIIHASLDIVVWLQWSVN-------------TSYFDCLDSFGDLR 69 (136)
T ss_pred eEEEEecCCCceeeeeecCcCcccCH-HHHHHHhHHhhhhhHHHHHHHHHHhh-------------hHHHHHHHhhCCeE
Confidence 49999999999999999832222333 334444 4678855555666666532 23444444 36679
Q ss_pred EEEEecCCceEEEEEeCCC-ChhHHHHHHHHHHHHHHHHhcCCCCCCCCCccchhHHHHHHHHHHhc
Q 030934 103 LSFMESPSGIKIILVTHPR-TGDLRESLKYIYNLYVEYVVKNPLYAPGTPIRSELFNTSLDQYVRTI 168 (169)
Q Consensus 103 l~~~~T~TgiKFvl~td~~-~~~~~~~l~~iy~lYv~~v~kNPfy~~~~pI~s~~F~~~v~~~~~~~ 168 (169)
+++|.||+|+||+++|.+. ..++|.||+++|++|++.+| ||||++++||+|+.||.+|+.+.|.+
T Consensus 70 IsAYi~pSgmkf~~iH~n~s~~N~rsF~qevHely~ktLm-spfy~~~~pirsqafd~~Vr~~ar~~ 135 (136)
T COG5603 70 ISAYIMPSGMKFLFIHQNQSRKNARSFLQEVHELYAKTLM-SPFYEPDEPIRSQAFDDGVREAARVC 135 (136)
T ss_pred EEEEEccCCceEEEEeccchhhhHHHHHHHHHHHHHHHhh-CcccCCCccccchhhhhhHHHHHHhh
Confidence 9999999999999999775 57899999999999999888 99999999999999999999998864
No 7
>KOG3487 consensus TRAPP 20 K subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=9e-24 Score=159.02 Aligned_cols=130 Identities=15% Similarity=0.242 Sum_probs=108.3
Q ss_pred EEEEEccCCceeeeeccccccc-CCChhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcCCCCCcceeEEe-eCCeE
Q 030934 25 MMYVFNRNGVCLLYREWNRLLH-TLNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFR-TNTYK 102 (169)
Q Consensus 25 s~~Iink~g~~Iy~~ef~~~~~-~~~~~~e~~ll~g~lhSL~~i~~klsp~~~~~~~~g~~~~~~~~~~~~~~~-T~~yk 102 (169)
+|+|+++.++|+|+.||..+.+ +...++...|-..++|+.-.|.+++.|.... ++++.++ .+++-
T Consensus 4 yfaIig~~d~Pvye~e~~~~~~~~~~~~~~~~LN~FI~HAaLdiVde~~W~~sn-------------mYLktVDkfne~~ 70 (139)
T KOG3487|consen 4 YFAIIGHCDNPVYEMEFGCPENSKAARDDNRHLNQFIVHAALDIVDELQWTTSN-------------MYLKTVDKFNELF 70 (139)
T ss_pred EEEEEecCCCceEEeecCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHh-------------hHHHHHHhhccee
Confidence 7999999999999999985432 2333345666788999888888888887531 3333333 47799
Q ss_pred EEEEecCCceEEEEEeCCCC-hhHHHHHHHHHHHHHHHHhcCCCCCCCCCccchhHHHHHHHHHHhc
Q 030934 103 LSFMESPSGIKIILVTHPRT-GDLRESLKYIYNLYVEYVVKNPLYAPGTPIRSELFNTSLDQYVRTI 168 (169)
Q Consensus 103 l~~~~T~TgiKFvl~td~~~-~~~~~~l~~iy~lYv~~v~kNPfy~~~~pI~s~~F~~~v~~~~~~~ 168 (169)
|++|+|++++||+|++..++ ++++.||+++|++|++++| ||||++++||+|+.||.+++.+.|++
T Consensus 71 VSAyvTas~i~f~mlh~~~~~~~ik~Ffqev~elyik~lm-npFy~~~dpirs~afd~kv~~~~rkh 136 (139)
T KOG3487|consen 71 VSAYVTASHIRFIMLHINRADDNIKLFFQEVHELYIKTLM-NPFYEINDPIRSPAFDHKVRGLARKH 136 (139)
T ss_pred EEEEEccCcEEEEEEeeccccccHHHHHHHHHHHHHHHHh-CcccccCCccccHHHHHHHHHHHHHH
Confidence 99999999999999999885 6899999999999999888 99999999999999999999998864
No 8
>KOG3444 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=4.3e-17 Score=119.91 Aligned_cols=114 Identities=19% Similarity=0.306 Sum_probs=89.2
Q ss_pred eEEEEEEccCCceeeeecccccccCCChhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcCCCCCcceeEEeeCCeE
Q 030934 23 AHMMYVFNRNGVCLLYREWNRLLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTNTYK 102 (169)
Q Consensus 23 iys~~Iink~g~~Iy~~ef~~~~~~~~~~~e~~ll~g~lhSL~~i~~klsp~~~~~~~~g~~~~~~~~~~~~~~~T~~yk 102 (169)
+.++.++++.++++|.+.+... +++.++.+....||+.|.++++...+....++ ++++ | .++.|++||
T Consensus 2 ~v~~av~g~kn~~lyi~s~t~~------e~~L~~~y~v~~sLDVieekvn~~gkg~~tsn-e~fL----G-LLy~ted~k 69 (121)
T KOG3444|consen 2 LVCLAVAGPKNEPLYIESITPK------EKELKLHYQVHLSLDVIEEKVNDPGKGERTSN-ELFL----G-LLYPTEDYK 69 (121)
T ss_pred EEEEEEEcCCCCccEEEecCcH------HHHHHhHhhhhhhHHHHHHHhcCcccCccchh-hhhh----c-cccccccee
Confidence 5678999999999999988642 45667777777799999999965332211111 1222 1 678999999
Q ss_pred EEEEecCCceEEEEEeCCC-----ChhHHHHHHHHHHHHHHHHhcCCCCCCC
Q 030934 103 LSFMESPSGIKIILVTHPR-----TGDLRESLKYIYNLYVEYVVKNPLYAPG 149 (169)
Q Consensus 103 l~~~~T~TgiKFvl~td~~-----~~~~~~~l~~iy~lYv~~v~kNPfy~~~ 149 (169)
+++|.|+|.+||||++|.. ..++|.+||.+|-+|.|.. .||||-++
T Consensus 70 vYgfvtNTkVKFIlvvdssd~avreteiRsv~r~~h~l~td~~-~npfy~pg 120 (121)
T KOG3444|consen 70 VYGFVTNTKVKFILVVDSSDYAVRETEIRSVFRILHLLYTDLS-CNPFYLPG 120 (121)
T ss_pred EEEEEeccEEEEEEEEcCCcceehhHHHHHHHHHHHHHHHHhe-ecceeccC
Confidence 9999999999999999875 4689999999999999955 59999886
No 9
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.
Probab=95.24 E-value=0.79 Score=34.57 Aligned_cols=91 Identities=15% Similarity=0.368 Sum_probs=56.7
Q ss_pred eEEEEEEccCCceeeeecccccccCCChhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcCCCCCcceeEEeeCCeE
Q 030934 23 AHMMYVFNRNGVCLLYREWNRLLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTNTYK 102 (169)
Q Consensus 23 iys~~Iink~g~~Iy~~ef~~~~~~~~~~~e~~ll~g~lhSL~~i~~klsp~~~~~~~~g~~~~~~~~~~~~~~~T~~yk 102 (169)
|.+++|+|++|+.++.|-|.. .. . .+...++.-+. .+....... .+.+ +..++++
T Consensus 2 I~~i~i~n~~G~~i~~k~y~~-~~---~-~~~~~~~~~~~------~~~~~~~~~------------~~~i--~~~~~~~ 56 (141)
T PF01217_consen 2 IKAILILNSQGKRILSKYYRD-VS---E-EERQKLFEKFI------KKKSSRNSK------------QSPI--FEHDNYR 56 (141)
T ss_dssp EEEEEEEETTSEEEEEEESST-ST---S-HHHHHHHHHHH------HHHHTSSSS------------STSE--EEETTEE
T ss_pred EEEEEEEcCCCCEEEehhcCC-cc---H-HHHHHHHHHHH------HHHHhcccc------------ccee--eecccce
Confidence 899999999999999999943 21 1 22233333222 112221110 0122 3456666
Q ss_pred EEEEecCCceEEEEEeCCCChhH--HHHHHHHHHHHHHH
Q 030934 103 LSFMESPSGIKIILVTHPRTGDL--RESLKYIYNLYVEY 139 (169)
Q Consensus 103 l~~~~T~TgiKFvl~td~~~~~~--~~~l~~iy~lYv~~ 139 (169)
+ .|.-..++-|+++++.+..++ -++++.+.+++-+|
T Consensus 57 ~-vy~~~~dl~~~~v~~~~eNel~~~e~l~~~v~~l~~~ 94 (141)
T PF01217_consen 57 I-VYKRYSDLYFVVVGDENENELLLLEFLHRLVEVLDDY 94 (141)
T ss_dssp E-EEEEETTEEEEEEESSTSBHHHHHHHHHHHHHHHHHH
T ss_pred e-eeEeeccEEEEEEeecccchHHHHHHHHHhhhhhhhh
Confidence 6 666678999999999877654 57788888776664
No 10
>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D ....
Probab=93.84 E-value=0.65 Score=31.88 Aligned_cols=44 Identities=16% Similarity=0.310 Sum_probs=36.8
Q ss_pred eEEeeCCeEEEEEecCCceEEEEEeCCCChh--HHHHHHHHHHHHHH
Q 030934 94 HSFRTNTYKLSFMESPSGIKIILVTHPRTGD--LRESLKYIYNLYVE 138 (169)
Q Consensus 94 ~~~~T~~ykl~~~~T~TgiKFvl~td~~~~~--~~~~l~~iy~lYv~ 138 (169)
.+++.++|.+|++. ..|+-++++||...+. .=.+|++|...|..
T Consensus 17 ~s~~~~~~~fh~~~-~~~i~~~citd~~~~~r~aF~fL~~i~~~F~~ 62 (83)
T PF13774_consen 17 MSYESGNYVFHYLV-EDGIAYLCITDKSYPKRVAFAFLEEIKQEFIQ 62 (83)
T ss_dssp EEEEETTEEEEEEE-ETTEEEEEEEETTS-HHHHHHHHHHHHHHHHH
T ss_pred EEEEECCEEEEEEE-cCCeEEEEEEcCCCCcchHHHHHHHHHHHHHH
Confidence 67888999999999 9999999999998653 34788999887776
No 11
>KOG0861 consensus SNARE protein YKT6, synaptobrevin/VAMP syperfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.53 E-value=1 Score=36.48 Aligned_cols=97 Identities=13% Similarity=0.133 Sum_probs=60.6
Q ss_pred ceeEEEEEEcc--CCceeeeecccccccCCChhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcCCCCCcceeEEee
Q 030934 21 NNAHMMYVFNR--NGVCLLYREWNRLLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRT 98 (169)
Q Consensus 21 m~iys~~Iink--~g~~Iy~~ef~~~~~~~~~~~e~~ll~g~lhSL~~i~~klsp~~~~~~~~g~~~~~~~~~~~~~~~T 98 (169)
|.||++.|+++ +...|....+.-..=... ..-..--.|-|--+.++++..|-. .+++.-
T Consensus 1 Mki~sl~V~~~~~~~~~ll~~a~dls~FsfF--qRssV~Efm~F~sktvaeRt~~g~-----------------rqsvk~ 61 (198)
T KOG0861|consen 1 MKIYSLSVLHKGTSDVKLLKTASDLSSFSFF--QRSSVQEFMTFISKTVAERTGPGQ-----------------RQSVKH 61 (198)
T ss_pred CceEEEEEEeeCCcchhhhhhhcccccccce--eeccHHHHHHHHHHHHHHhcCccc-----------------cccccc
Confidence 78999999998 333333333221100000 001222345566677888866532 467777
Q ss_pred CCeEEEEEecCCceEEEEEeCCCChh--HHHHHHHHHHHH
Q 030934 99 NTYKLSFMESPSGIKIILVTHPRTGD--LRESLKYIYNLY 136 (169)
Q Consensus 99 ~~ykl~~~~T~TgiKFvl~td~~~~~--~~~~l~~iy~lY 136 (169)
++|++|+|.-+.|+--|+++|..=+. .-.+|++|-.-|
T Consensus 62 ~~Y~~h~yvrndgL~~V~~~D~eYP~rvA~tLL~kvld~~ 101 (198)
T KOG0861|consen 62 EEYLVHVYVRNDGLCGVLIADDEYPVRVAFTLLNKVLDEF 101 (198)
T ss_pred ceeEEEEEEecCCeeEEEEecCcCchhHHHHHHHHHHHHH
Confidence 89999999999999999999987442 335666666555
No 12
>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain. In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole [, ]. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes [, ].
Probab=92.40 E-value=3.6 Score=36.97 Aligned_cols=83 Identities=16% Similarity=0.356 Sum_probs=59.6
Q ss_pred EEEEEccCCceeeeecccccccCCChhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcCCCCCcceeEEeeCCeEEE
Q 030934 25 MMYVFNRNGVCLLYREWNRLLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTNTYKLS 104 (169)
Q Consensus 25 s~~Iink~g~~Iy~~ef~~~~~~~~~~~e~~ll~g~lhSL~~i~~klsp~~~~~~~~g~~~~~~~~~~~~~~~T~~ykl~ 104 (169)
.++|+..+|.|||.|. +. ++..--+.|++++|-.+.+.-. ..++.+..++.++.
T Consensus 13 h~fIlS~AGKPIysr~-G~-------e~~l~~~~g~~~aiiS~~~~~~------------------d~l~~i~~~~~~iv 66 (415)
T PF03164_consen 13 HFFILSSAGKPIYSRY-GD-------EDKLSSLMGVIQAIISFFQSNG------------------DELRSIRAGDHRIV 66 (415)
T ss_pred eEEEECCCCceeEEec-CC-------hHHHHHHHHHHHHHHHHHHhCC------------------CcEEEEEeCCEEEE
Confidence 4899999999999985 32 2445566788887766654311 13677888888887
Q ss_pred EEecCCceEEEEEeCCCCh--hHHHHHHHHHH
Q 030934 105 FMESPSGIKIILVTHPRTG--DLRESLKYIYN 134 (169)
Q Consensus 105 ~~~T~TgiKFvl~td~~~~--~~~~~l~~iy~ 134 (169)
+ ..-+.+-+|.++....+ .++.-|+-+|.
T Consensus 67 f-l~r~pl~lv~vS~~~e~~~~l~~qL~~ly~ 97 (415)
T PF03164_consen 67 F-LNRGPLILVAVSKTGESESQLRKQLDYLYS 97 (415)
T ss_pred E-EecCCEEEEEEcCCcCCHHHHHHHHHHHHH
Confidence 4 45889999999887654 46777777775
No 13
>PF08217 DUF1712: Fungal domain of unknown function (DUF1712); InterPro: IPR013176 The function of this fungal family of proteins is unknown.
Probab=82.82 E-value=14 Score=35.12 Aligned_cols=111 Identities=19% Similarity=0.302 Sum_probs=73.9
Q ss_pred CceeeeecccccccCCChhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcCCCCCcceeEEeeCCeEEEEEecCCce
Q 030934 33 GVCLLYREWNRLLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTNTYKLSFMESPSGI 112 (169)
Q Consensus 33 g~~Iy~~ef~~~~~~~~~~~e~~ll~g~lhSL~~i~~klsp~~~~~~~~g~~~~~~~~~~~~~~~T~~ykl~~~~T~Tgi 112 (169)
.+.||+.-... ...+.++.+...|+.-|+-.|++..++... -+.+.|+.-++-+++--.|+
T Consensus 17 ~kILfY~p~~~---~~~~~neql~~IGL~qglv~Ft~~Fs~~~~----------------~~~I~T~K~r~v~~e~Ep~~ 77 (604)
T PF08217_consen 17 KKILFYYPFEE---SETSLNEQLRQIGLAQGLVSFTRTFSPDDP----------------CDSIHTEKSRIVFYEPEPGF 77 (604)
T ss_pred ceEEEEecCCc---cCCCHHHHHHHhhHHHHHHHHHHhcCCCCc----------------ccceeecceEEEEEEecCCE
Confidence 34566554411 112347889999999999999999988653 24578999999999999999
Q ss_pred EEEEEeCC-C----C----hhHHHHHHHHHHHHHHHHhcCCCCCCCCCccchhHHHHHHHHHH
Q 030934 113 KIILVTHP-R----T----GDLRESLKYIYNLYVEYVVKNPLYAPGTPIRSELFNTSLDQYVR 166 (169)
Q Consensus 113 KFvl~td~-~----~----~~~~~~l~~iy~lYv~~v~kNPfy~~~~pI~s~~F~~~v~~~~~ 166 (169)
++++..+. . . ..++..|++.|+.|.= ..-||-..-. .-+.|..+++.+..
T Consensus 78 Wi~l~I~~~~~~~~~~~~~~~L~~~L~~~Y~~F~L--~hGsfs~~l~--~r~~L~~~L~~F~~ 136 (604)
T PF08217_consen 78 WIVLSINLPKEQSTKDGPEQYLLSVLKQAYSMFRL--FHGSFSSLLE--GREKLKDRLEDFFS 136 (604)
T ss_pred EEEEEEecCcCCccccchHHHHHHHHHHHHHHHHH--HcCCHHHhcc--cHHHHHHHHHHHHH
Confidence 99887661 1 1 1267777777776643 2234433222 55666666666654
No 14
>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.43 E-value=52 Score=29.65 Aligned_cols=92 Identities=15% Similarity=0.135 Sum_probs=51.8
Q ss_pred eEEEEEEccCCceeeeecccccccCCChhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcCCCCCcceeEEeeCCeE
Q 030934 23 AHMMYVFNRNGVCLLYREWNRLLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTNTYK 102 (169)
Q Consensus 23 iys~~Iink~g~~Iy~~ef~~~~~~~~~~~e~~ll~g~lhSL~~i~~klsp~~~~~~~~g~~~~~~~~~~~~~~~T~~yk 102 (169)
+.|+|++|-+|.++++++|...-. .+.++..++ .+...+...... + -.+.+.+|.
T Consensus 2 i~siflidtsg~l~lek~~~g~t~-------~rsic~~f~--e~~~~~~~~e~~---------------p-pvi~~p~hy 56 (418)
T KOG2740|consen 2 ILSIFLIDTSGDLLLEKHLKGSTV-------VRSICDYFF--EDQSSDDDLEHV---------------P-PVISTPHHY 56 (418)
T ss_pred eeEEEEEcCCchhhhhHhhCCcee-------eeehHHHHH--HhhhhccccccC---------------C-ceecCCcee
Confidence 899999999999999999983110 111222221 111222222111 0 122344443
Q ss_pred EEEEecCCceEEEEEeCCCCh--hHHHHHHHHHHHHHHHH
Q 030934 103 LSFMESPSGIKIILVTHPRTG--DLRESLKYIYNLYVEYV 140 (169)
Q Consensus 103 l~~~~T~TgiKFvl~td~~~~--~~~~~l~~iy~lYv~~v 140 (169)
+. =+-..++.|++.+..+.+ .+-+||++|=+...+|.
T Consensus 57 lf-sv~~~~i~~~~~st~e~pPL~~iefL~rv~dv~~eyF 95 (418)
T KOG2740|consen 57 LF-SVYRDLIFFCAVSTVETPPLMVIEFLHRVVDVLLEYF 95 (418)
T ss_pred ee-eeeccCcEEEEEEeccCCChhHHHHHHHHHHHHHHHh
Confidence 32 123467888888777665 45688888877666654
No 15
>PF08253 Leader_Erm: Erm Leader peptide ; InterPro: IPR013204 These short proteins are leader peptides (15-19 amino acids) of erm genes that code for resistance determinants in Staphylococcus aureus [].
Probab=59.29 E-value=7.9 Score=19.91 Aligned_cols=11 Identities=18% Similarity=0.353 Sum_probs=9.5
Q ss_pred ceeEEEEEEcc
Q 030934 21 NNAHMMYVFNR 31 (169)
Q Consensus 21 m~iys~~Iink 31 (169)
|+++|+++|++
T Consensus 1 MG~fSiFVI~~ 11 (19)
T PF08253_consen 1 MGMFSIFVINT 11 (19)
T ss_pred CceEEEEEEEe
Confidence 77899999986
No 16
>KOG0936 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.33 E-value=1.1e+02 Score=24.31 Aligned_cols=38 Identities=13% Similarity=0.329 Sum_probs=26.4
Q ss_pred eEEEEEEccCCceeeeecccccccCCChhhhHHHHHHHHHHH
Q 030934 23 AHMMYVFNRNGVCLLYREWNRLLHTLNAQQDHKLMFGLLFSL 64 (169)
Q Consensus 23 iys~~Iink~g~~Iy~~ef~~~~~~~~~~~e~~ll~g~lhSL 64 (169)
|+.+.|+|++|+|=.-+=|..- +.+-.++++-+++|-+
T Consensus 2 I~AvlifNn~gkPRL~KFY~p~----~~~~Qq~lir~vf~lv 39 (182)
T KOG0936|consen 2 IKAVLIFNNKGKPRLVKFYTPV----DEEKQQQLIREVFHLV 39 (182)
T ss_pred eeEEEEecCCCCcceeeecCcC----ChHHHHHHHHHHHHHH
Confidence 8999999999999888766531 1123456666676654
No 17
>PF03259 Robl_LC7: Roadblock/LC7 domain; InterPro: IPR004942 This family includes proteins that are about 100 amino acids long and have been shown to be related []. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions []. This family also includes Golgi-associated MP1 adapter protein (Q9Y2Q5 from SWISSPROT) and MglB from Myxococcus xanthus (Q50883 from SWISSPROT), a protein involved in gliding motility []. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.; PDB: 2B95_B 1Z09_A 2E8J_B 2HZ5_B 3KYE_A 2ZL1_B 1SKO_B 3CPT_B 1VEU_B 1VET_B ....
Probab=50.09 E-value=52 Score=21.93 Aligned_cols=41 Identities=12% Similarity=0.216 Sum_probs=25.1
Q ss_pred eEEEEEEccCCceeeeecccccccCCChhhhHHHHHHHHHHHHHHHHhc
Q 030934 23 AHMMYVFNRNGVCLLYREWNRLLHTLNAQQDHKLMFGLLFSLKSLTAKM 71 (169)
Q Consensus 23 iys~~Iink~g~~Iy~~ef~~~~~~~~~~~e~~ll~g~lhSL~~i~~kl 71 (169)
|....|++++|.+|......+ .+...++.+..++...++++
T Consensus 15 v~~~~l~~~dG~~i~~~~~~~--------~~~~~~aa~~a~~~~~~~~~ 55 (91)
T PF03259_consen 15 VRGAVLVDKDGLVIASSGIDD--------DDAEKLAAMAASLLAAAEKL 55 (91)
T ss_dssp EEEEEEEETTSEEEEETSSSH--------HHHHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEEcCCCCEEEEecCCc--------ccHHHHHHHHHHHHHHHHHH
Confidence 778999999999999933322 23344444444444444443
No 18
>COG3721 HugX Putative heme iron utilization protein [Inorganic ion transport and metabolism]
Probab=49.91 E-value=37 Score=27.06 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=35.0
Q ss_pred CCceeEEEEEEccCCceeeeecccccccCCChhhhHHHHHHHHHHHHHHHHhc
Q 030934 19 SGNNAHMMYVFNRNGVCLLYREWNRLLHTLNAQQDHKLMFGLLFSLKSLTAKM 71 (169)
Q Consensus 19 ~~m~iys~~Iink~g~~Iy~~ef~~~~~~~~~~~e~~ll~g~lhSL~~i~~kl 71 (169)
-||--+|++.||.+|+-+|.--..+. +...++..=+...+++.+++
T Consensus 129 mG~~s~si~Ffn~~G~~mfKiylgRD-------e~RqL~~eqvakF~~l~~~~ 174 (176)
T COG3721 129 MGMESASILFFNAQGEAMFKIYLGRD-------EHRQLLPEQVAKFHALAQQL 174 (176)
T ss_pred CCccceeeeeecccCceeeeeeeccc-------hHhhhhHHHHHHHHHHHHHh
Confidence 47778999999999999998877763 44566777777777776654
No 19
>PF13585 CHU_C: C-terminal domain of CHU protein family; PDB: 3EIF_A 1XF1_B.
Probab=44.85 E-value=21 Score=24.78 Aligned_cols=21 Identities=14% Similarity=0.189 Sum_probs=14.0
Q ss_pred CceeEEEEEEccCCceeeeec
Q 030934 20 GNNAHMMYVFNRNGVCLLYRE 40 (169)
Q Consensus 20 ~m~iys~~Iink~g~~Iy~~e 40 (169)
.-.-+.+.|+||-|++||+.+
T Consensus 25 ~~~~~~~~IynrwG~~Vf~~~ 45 (87)
T PF13585_consen 25 NIPNYSLTIYNRWGELVFESN 45 (87)
T ss_dssp -EEEEEEEEE-SSS-EEEE--
T ss_pred ccceeEEEEEeCCCcEEEEEC
Confidence 334688999999999999764
No 20
>COG2122 Uncharacterized conserved protein [Function unknown]
Probab=41.90 E-value=61 Score=27.44 Aligned_cols=52 Identities=15% Similarity=0.260 Sum_probs=33.8
Q ss_pred EEEeCCCCh--hHHHHHHHHHHHHHHHHhcCCCC-CCCCCccchhHHHHHHHHHH
Q 030934 115 ILVTHPRTG--DLRESLKYIYNLYVEYVVKNPLY-APGTPIRSELFNTSLDQYVR 166 (169)
Q Consensus 115 vl~td~~~~--~~~~~l~~iy~lYv~~v~kNPfy-~~~~pI~s~~F~~~v~~~~~ 166 (169)
.+-+|.+.. ...+....--..-.+||++||-+ ..-.||.|+.|.-.+-+.+.
T Consensus 25 ~i~ad~~~~~~aa~~aV~~~R~~Le~yI~~nP~f~ts~~pi~~~e~~peivrrM~ 79 (256)
T COG2122 25 TIRADDEAHEKAAEEAVLRHRSELEDYILKNPEFLTSLEPIECREFAPEIVRRMS 79 (256)
T ss_pred EEEecCHHHHHHHHHHHHHHHHHHHHHHHhCcchhcccceeeccccCcHHHHHHH
Confidence 445555432 24444443334677999999965 46789999999887665543
No 21
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.82 E-value=1.9e+02 Score=24.03 Aligned_cols=40 Identities=15% Similarity=0.345 Sum_probs=27.9
Q ss_pred eEEeeCCeEEEEEecCCceEEEEEeCCCChhH--HHHHHHHHH
Q 030934 94 HSFRTNTYKLSFMESPSGIKIILVTHPRTGDL--RESLKYIYN 134 (169)
Q Consensus 94 ~~~~T~~ykl~~~~T~TgiKFvl~td~~~~~~--~~~l~~iy~ 134 (169)
.+|..+.|..|+..+. |+-+++++|.+..-- =.||.+|++
T Consensus 44 ~tYs~d~y~Fh~l~~d-g~tylcvadds~gR~ipfaFLe~Ik~ 85 (217)
T KOG0859|consen 44 FTYSCDGYTFHYLVED-GLTYLCVADDSAGRQIPFAFLERIKE 85 (217)
T ss_pred eEEecCCeEEEEEEeC-CeEEEEEEeccccccccHHHHHHHHH
Confidence 5778899999988875 688999998865311 135555555
No 22
>PF07013 DUF1314: Protein of unknown function (DUF1314); InterPro: IPR010741 This family consists of several alphaherpesvirus proteins of around 200 residues in length. They belong to the varicellovirus ORF2 family and their function is unknown.
Probab=38.25 E-value=38 Score=27.19 Aligned_cols=24 Identities=13% Similarity=0.242 Sum_probs=21.7
Q ss_pred ceeEEeeCCeEEEEEecCCceEEE
Q 030934 92 SFHSFRTNTYKLSFMESPSGIKII 115 (169)
Q Consensus 92 ~~~~~~T~~ykl~~~~T~TgiKFv 115 (169)
.|..|...++.+++||-.||+-|+
T Consensus 60 kF~iy~~~~~~vyGyE~~tgLH~L 83 (177)
T PF07013_consen 60 KFVIYLSRNGSVYGYENGTGLHFL 83 (177)
T ss_pred eEEEEEccCCeEEeecCCcchhhh
Confidence 578889999999999999999876
No 23
>PHA03371 circ protein; Provisional
Probab=38.10 E-value=34 Score=28.75 Aligned_cols=25 Identities=12% Similarity=0.203 Sum_probs=20.6
Q ss_pred cceeEEeeCCeEEEEEecCCceEEE
Q 030934 91 CSFHSFRTNTYKLSFMESPSGIKII 115 (169)
Q Consensus 91 ~~~~~~~T~~ykl~~~~T~TgiKFv 115 (169)
..|..|...++.|++||-.||+-|+
T Consensus 82 RkF~iyl~r~~sVyGYE~gtGLH~L 106 (240)
T PHA03371 82 RKFVIYLSRNGSVYGYENGTGLHFL 106 (240)
T ss_pred ceEEEEEccCCeEEeecCCcchhhh
Confidence 3577888888999999999998776
No 24
>KOG2635 consensus Medium subunit of clathrin adaptor complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.45 E-value=3.4e+02 Score=25.23 Aligned_cols=75 Identities=12% Similarity=0.233 Sum_probs=47.6
Q ss_pred ceeEEEEEEccCCceeeeecccccccCCChhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcCCCCCcceeEEeeCC
Q 030934 21 NNAHMMYVFNRNGVCLLYREWNRLLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTNT 100 (169)
Q Consensus 21 m~iys~~Iink~g~~Iy~~ef~~~~~~~~~~~e~~ll~g~lhSL~~i~~klsp~~~~~~~~g~~~~~~~~~~~~~~~T~~ 100 (169)
|.+-...|..|.|+.|..|.|-. . ...++-|+|-+.- .-++ ...+ + -.++|+.
T Consensus 1 Mvvlaa~i~t~~Gk~ivsRqf~~-M-------sr~RIEgLl~aFp---kLv~-~~~q---h------------T~vEt~~ 53 (512)
T KOG2635|consen 1 MVVLAASINTKTGKAIVSRQFRE-M-------SRSRIEGLLAAFP---KLVS-AGKQ---H------------TFVETDS 53 (512)
T ss_pred CeEEEEEEeecCCceeeehHhHh-h-------hHHHHHHHHHHhH---Hhhc-cCCC---c------------cEEeccc
Confidence 77888999999999999999962 1 1233344432222 1122 1110 0 1245666
Q ss_pred eEEEEEecCCceEEEEEeCCCCh
Q 030934 101 YKLSFMESPSGIKIILVTHPRTG 123 (169)
Q Consensus 101 ykl~~~~T~TgiKFvl~td~~~~ 123 (169)
+| |.|+-...+=+||+|.....
T Consensus 54 VR-YVYqP~d~lY~vLITtk~SN 75 (512)
T KOG2635|consen 54 VR-YVYQPLDNLYIVLITTKQSN 75 (512)
T ss_pred EE-EEEEecccEEEEEEeccccc
Confidence 65 67899999999999987653
No 25
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.62 E-value=2.6e+02 Score=23.28 Aligned_cols=84 Identities=18% Similarity=0.241 Sum_probs=51.4
Q ss_pred HHHHHHhcCCCCCCCCCCCCCcCCCCCcceeEEeeCCeEEEEEecCCceEEEEEeCCCChh------HHHHHHHHHHHHH
Q 030934 64 LKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTNTYKLSFMESPSGIKIILVTHPRTGD------LRESLKYIYNLYV 137 (169)
Q Consensus 64 L~~i~~klsp~~~~~~~~g~~~~~~~~~~~~~~~T~~ykl~~~~T~TgiKFvl~td~~~~~------~~~~l~~iy~lYv 137 (169)
++.+..++++.... .-+.+|+.|.+|+. .-.||=+++++|..-+. +.++=++....|-
T Consensus 37 ~K~L~kkLs~~s~~---------------r~Sietg~f~fHfl-i~~~Vcylvicd~~yP~kLAF~YLedL~~EF~~~~~ 100 (216)
T KOG0862|consen 37 AKSLFKKLSQQSPT---------------RCSIETGPFVFHFL-IESGVCYLVICDKSYPRKLAFSYLEDLAQEFDKSYG 100 (216)
T ss_pred HHHHHHhccCCCCc---------------ccccccCCeEEEEE-ecCCEEEEEEecCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 45556677775321 24567888888865 46799999999987542 3344444444555
Q ss_pred HHHhcCCCCCCCCCccchhHHHHHHHH
Q 030934 138 EYVVKNPLYAPGTPIRSELFNTSLDQY 164 (169)
Q Consensus 138 ~~v~kNPfy~~~~pI~s~~F~~~v~~~ 164 (169)
+-+. +|-..|=.=|+=..|.+++++.
T Consensus 101 ~~~~-~~~~RPY~FieFD~~IQk~Kk~ 126 (216)
T KOG0862|consen 101 KNII-QPASRPYAFIEFDTFIQKTKKR 126 (216)
T ss_pred cccC-CccCCCeeEEehhHHHHHHHHH
Confidence 5333 5554444556666666666543
No 26
>PF08800 VirE_N: VirE N-terminal domain; InterPro: IPR014907 This domain is associated with the N terminus of Virulence E proteins. The function of the domain is unknown.
Probab=35.49 E-value=1.4e+02 Score=22.48 Aligned_cols=23 Identities=39% Similarity=0.545 Sum_probs=17.6
Q ss_pred CeEEEEEecCCc--eEEEEEeCCCC
Q 030934 100 TYKLSFMESPSG--IKIILVTHPRT 122 (169)
Q Consensus 100 ~ykl~~~~T~Tg--iKFvl~td~~~ 122 (169)
.|.+.+|.|++| +|.++-.+...
T Consensus 57 p~t~~~f~SpSG~GvKi~v~~~~~~ 81 (136)
T PF08800_consen 57 PYTLAAFVSPSGRGVKIIVPFDYPD 81 (136)
T ss_pred CcEEEEEEcCCCCeEEEEEEecCCC
Confidence 366889999986 99988776543
No 27
>PF07599 DUF1563: Protein of unknown function (DUF1563); InterPro: IPR011457 This is a small family of short hypothetical proteins in Leptospira interrogans.
Probab=32.02 E-value=59 Score=19.85 Aligned_cols=20 Identities=40% Similarity=0.770 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHhcCCC
Q 030934 126 RESLKYIYNLYVEYVVKNPL 145 (169)
Q Consensus 126 ~~~l~~iy~lYv~~v~kNPf 145 (169)
-+.|..+|..||+|.+|--|
T Consensus 11 L~TLeNlYatyve~~lkq~f 30 (43)
T PF07599_consen 11 LETLENLYATYVEYFLKQTF 30 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999986444
No 28
>PF03288 Pox_D5: Poxvirus D5 protein-like; InterPro: IPR004968 This domain is found at the C terminus of phage P4 alpha protein and related proteins. Phage P4 DNA replication depends on the product of the alpha gene, which has origin recognition ability, DNA helicase activity, and DNA primase activity. The structure of the protein can be summarised as follows: The N terminus provides the primase activity, the central region is the helicase/nucleoside triphosphatase domain and the ori DNA recognition resides in the C-terminal 1/3 of the protein []. The domain is also found at the C terminus of a number of proteins from orthopox viruses including vaccinia virus D5. D5 encodes a 90kDa protein that is transiently expressed at early times after infection. It has an nucleoside triphosphatase activity which is independent of common nucleic acid cofactors and it can hydrolyse all the common ribo- and deoxyribonucleoside triphosphates to diphosphates in the presence of a divalent cation [].; PDB: 1KA8_E.
Probab=27.77 E-value=96 Score=20.88 Aligned_cols=34 Identities=29% Similarity=0.550 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCccchhHHHHHHHHHH
Q 030934 130 KYIYNLYVEYVVKNPLYAPGTPIRSELFNTSLDQYVR 166 (169)
Q Consensus 130 ~~iy~lYv~~v~kNPfy~~~~pI~s~~F~~~v~~~~~ 166 (169)
..+|++|..+.-.|=... ++....|..+|++.+.
T Consensus 25 ~~lY~~Y~~wc~~ng~~~---~ls~~~F~~~L~~~~~ 58 (86)
T PF03288_consen 25 KDLYDAYKEWCEENGYKP---PLSKRKFGKELKQYFP 58 (86)
T ss_dssp TBHHHHHHHHHHHTT-S-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCc---ccCHHHHHHHHHHHhh
Confidence 567777777776775543 6899999999999874
No 29
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=25.95 E-value=78 Score=21.80 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=13.9
Q ss_pred eEEEEEeCCCChhHHHHHHHHHHHH
Q 030934 112 IKIILVTHPRTGDLRESLKYIYNLY 136 (169)
Q Consensus 112 iKFvl~td~~~~~~~~~l~~iy~lY 136 (169)
-||+.+|+++. .+.++.++|=+-|
T Consensus 3 kKFLhlt~~~~-tl~~L~~eI~~~f 26 (73)
T PF10407_consen 3 KKFLHLTDPNN-TLSQLKEEIEERF 26 (73)
T ss_pred cEEEEEeCCCC-cHHHHHHHHHHHH
Confidence 48999999854 3333333433333
No 30
>COG3260 Ni,Fe-hydrogenase III small subunit [Energy production and conversion]
Probab=22.44 E-value=1.3e+02 Score=23.52 Aligned_cols=40 Identities=30% Similarity=0.524 Sum_probs=35.3
Q ss_pred EeeCCeEEEEEecCCceEEEEEeCCCChhHHHHHHHHHHH
Q 030934 96 FRTNTYKLSFMESPSGIKIILVTHPRTGDLRESLKYIYNL 135 (169)
Q Consensus 96 ~~T~~ykl~~~~T~TgiKFvl~td~~~~~~~~~l~~iy~l 135 (169)
|+.+.|.++.--+|-.--.+|+|..-...+++-|+++|+.
T Consensus 34 YDaErfgI~~v~sPRhADiLlVTG~vT~~~~e~lkk~Yea 73 (148)
T COG3260 34 YDAERFGIKVVNSPRHADILLVTGAVTRQMREPLKKAYEA 73 (148)
T ss_pred cchHHheeEEeCCCccccEEEEeccccHHHHHHHHHHHHh
Confidence 4567788999999999999999999999999999999973
No 31
>PF14945 LLC1: Normal lung function maintenance, Low in Lung Cancer 1 protein
Probab=21.77 E-value=56 Score=24.79 Aligned_cols=23 Identities=43% Similarity=0.728 Sum_probs=15.8
Q ss_pred cCCCCCCCCC-CCceeEEEEEEc-cCCceeee
Q 030934 9 ISPSPPVPTA-SGNNAHMMYVFN-RNGVCLLY 38 (169)
Q Consensus 9 ~~~~~~~~~~-~~m~iys~~Iin-k~g~~Iy~ 38 (169)
+.||||||.+ +|| || |++.+-++
T Consensus 70 v~pspPvPkTT~G~-------IGWRS~~p~~~ 94 (121)
T PF14945_consen 70 VLPSPPVPKTTQGF-------IGWRSAVPQLN 94 (121)
T ss_pred cCCCCCCCcccccc-------eeeccCCcccc
Confidence 3689999965 555 34 77766665
No 32
>KOG1382 consensus Multiple inositol polyphosphate phosphatase [General function prediction only]
Probab=20.85 E-value=79 Score=29.23 Aligned_cols=54 Identities=22% Similarity=0.285 Sum_probs=32.9
Q ss_pred CcccCCCCCCCCCCCceeEEEEEEccCCceeeeecccccccCCChhhhHHHHHHHHHHHHHHHHhcCC
Q 030934 6 GSEISPSPPVPTASGNNAHMMYVFNRNGVCLLYREWNRLLHTLNAQQDHKLMFGLLFSLKSLTAKMDP 73 (169)
Q Consensus 6 ~~~~~~~~~~~~~~~m~iys~~Iink~g~~Iy~~ef~~~~~~~~~~~e~~ll~g~lhSL~~i~~klsp 73 (169)
|--|-|++++|++|.| --++++.|||. |... ....+.+...+.=++.+..+...
T Consensus 48 ~~~~g~~~~lp~~C~p--~qv~~l~RHGt--------R~PT----~s~~~~~~~~~~~~~~~~~~~~~ 101 (467)
T KOG1382|consen 48 GFYIGPSRDLPEGCEP--KQVQLLIRHGT--------RYPT----KSVIAKIVSLAYKLKNYTRDQLG 101 (467)
T ss_pred cccCCCCCCCCCCcce--eeeeeehhcCC--------CCCc----HhHHHHHHHHHHHHHHHHHHhcC
Confidence 3456788889999998 34889999984 2111 12233344444446666666543
No 33
>PF11373 DUF3175: Protein of unknown function (DUF3175); InterPro: IPR021513 This entry is represented by Ralstonia phage RSL1, Orf186. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=20.03 E-value=5.4 Score=28.39 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=17.8
Q ss_pred CCCCCCCceeEEEEEEccCCceee
Q 030934 14 PVPTASGNNAHMMYVFNRNGVCLL 37 (169)
Q Consensus 14 ~~~~~~~m~iys~~Iink~g~~Iy 37 (169)
+-|-.|||.+..||| ||.|.-|-
T Consensus 44 ~~pf~SAMSML~FYI-NRAGk~L~ 66 (86)
T PF11373_consen 44 ATPFRSAMSMLNFYI-NRAGKNLP 66 (86)
T ss_pred CCchHHHHHHHHHHH-hcccccCC
Confidence 457789999888885 88887654
No 34
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=20.03 E-value=1.5e+02 Score=24.11 Aligned_cols=51 Identities=18% Similarity=0.330 Sum_probs=36.6
Q ss_pred HHHHH--HHHHHHHhcCCCCCCCCCCCCCcCCCCCcceeEEeeCCeEEEEEecCCceEEEEEeCCCCh
Q 030934 58 FGLLF--SLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTNTYKLSFMESPSGIKIILVTHPRTG 123 (169)
Q Consensus 58 ~g~lh--SL~~i~~klsp~~~~~~~~g~~~~~~~~~~~~~~~T~~ykl~~~~T~TgiKFvl~td~~~~ 123 (169)
++++| .++.+-..++|..++ ...+++.+|-.|+|.-.+|+.++++++...+
T Consensus 26 ~~ff~~~~v~~~l~~~~~~~a~---------------~~~ies~~~~~~~~~~s~gi~y~~~~~~e~p 78 (190)
T COG5143 26 FSFFHRSKVKEVLRFLSKTSAS---------------RASIESGDYFFHYLKMSSGIVYVPISDKEYP 78 (190)
T ss_pred ccccccchHHHHHHHhcccccc---------------hhccccCceEEEEEecCCCceeEEecccccc
Confidence 34444 455555666665432 2456788999999999999999999998643
Done!