Query 030934
Match_columns 169
No_of_seqs 129 out of 535
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 10:27:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030934.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030934hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j3t_C Trafficking protein par 100.0 1.1E-47 3.7E-52 296.3 15.4 136 21-169 1-138 (145)
2 3cue_A Transport protein parti 100.0 7.4E-45 2.5E-49 296.0 18.8 147 21-168 1-218 (219)
3 3cue_C Transport protein parti 100.0 1.5E-44 5E-49 282.8 14.4 136 21-169 1-157 (159)
4 2j3t_D Trafficking protein par 100.0 4.5E-40 1.5E-44 268.4 17.4 105 51-168 105-209 (219)
5 2j3w_A Sedlin, trafficking pro 100.0 1.4E-38 4.8E-43 244.2 16.5 133 21-168 3-139 (142)
6 3pr6_A Trapp-associated protei 99.8 1.3E-19 4.5E-24 141.5 13.7 115 23-150 10-134 (162)
7 3kyq_A YKT6, synaptobrevin hom 96.4 0.19 6.4E-06 39.7 14.7 99 21-138 2-104 (199)
8 3bw6_A Synaptobrevin homolog Y 95.7 0.43 1.5E-05 35.5 15.1 100 19-138 3-107 (144)
9 2vgl_S AP-2 complex subunit si 95.4 0.34 1.1E-05 35.7 11.6 92 23-140 2-95 (142)
10 1w63_Q Adapter-related protein 95.4 0.47 1.6E-05 35.7 12.7 92 23-140 2-95 (158)
11 2nut_C Vesicle-trafficking pro 94.3 1.4 4.8E-05 34.0 14.2 123 21-167 2-126 (196)
12 3tjz_C Coatomer subunit zeta-1 91.6 3.3 0.00011 31.0 12.7 96 18-140 8-105 (153)
13 1w63_M Adaptor-related protein 89.9 3.1 0.00011 35.8 11.0 93 21-140 1-95 (423)
14 2vgl_M AP-2 complex subunit MU 88.4 5.3 0.00018 34.5 11.4 90 23-140 2-93 (435)
15 4b93_A Vesicle-associated memb 88.1 7.5 0.00026 29.8 12.7 73 93-167 43-117 (189)
16 2vx8_A Nucleoporin-like protei 79.5 18 0.00062 27.4 11.3 89 18-138 41-131 (169)
17 4afi_A AP-3 complex subunit de 65.8 32 0.0011 26.1 8.1 71 94-167 96-169 (173)
18 2x5c_A Hypothetical protein OR 58.7 23 0.00077 25.1 5.5 42 101-142 62-112 (131)
19 2wx3_A MRNA-decapping enzyme 1 49.8 8.8 0.0003 23.9 1.9 16 126-141 28-43 (51)
20 3bua_E HSNM1B, DNA cross-LINK 47.4 3.8 0.00013 23.4 -0.1 30 135-165 6-35 (36)
21 4er8_A Tnparep for protein; pr 44.8 92 0.0031 23.0 7.6 68 101-168 48-119 (165)
22 3t12_B Gliding protein MGLB; G 42.6 95 0.0033 22.5 13.6 83 23-122 26-110 (136)
23 2wx4_A DCP1, decapping protein 34.8 14 0.00049 22.5 1.1 15 126-140 26-40 (46)
24 3con_A GTPase NRAS; structural 22.1 47 0.0016 23.6 2.2 23 11-33 9-31 (190)
No 1
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=100.00 E-value=1.1e-47 Score=296.26 Aligned_cols=136 Identities=46% Similarity=0.884 Sum_probs=123.9
Q ss_pred ceeEEEEEEccCCceeeeeccccccc-CCChhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcCCCCCcceeEEeeC
Q 030934 21 NNAHMMYVFNRNGVCLLYREWNRLLH-TLNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTN 99 (169)
Q Consensus 21 m~iys~~Iink~g~~Iy~~ef~~~~~-~~~~~~e~~ll~g~lhSL~~i~~klsp~~~~~~~~g~~~~~~~~~~~~~~~T~ 99 (169)
|+||+||||||+|+|||+++|++.+. +.+.+||.++++|++|||++|++|++|.+.. .++++++|+
T Consensus 1 M~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~~-------------~~~~~~~t~ 67 (145)
T 2j3t_C 1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMK-------------DGFLSFQTS 67 (145)
T ss_dssp -CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCCS-------------SCEEEEECS
T ss_pred CeEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCC-------------CceEEEecC
Confidence 88999999999999999999986532 3343688999999999999999999997542 358999999
Q ss_pred CeEEEEEecCCceEEEEEeCCCChhHHHHHHHHH-HHHHHHHhcCCCCCCCCCccchhHHHHHHHHHHhcC
Q 030934 100 TYKLSFMESPSGIKIILVTHPRTGDLRESLKYIY-NLYVEYVVKNPLYAPGTPIRSELFNTSLDQYVRTIA 169 (169)
Q Consensus 100 ~ykl~~~~T~TgiKFvl~td~~~~~~~~~l~~iy-~lYv~~v~kNPfy~~~~pI~s~~F~~~v~~~~~~~~ 169 (169)
+|++|||+|+||+||||+||++++++|++|++|| ++|+|||||||||++||||+|++||++|++++++++
T Consensus 68 ~ykl~~~~T~TgiKFvl~td~~~~~i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~s~~Fd~~v~~~~~~~~ 138 (145)
T 2j3t_C 68 RYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEFVVKNPLCPLGQTVQSELFRSRLDSYVRSLP 138 (145)
T ss_dssp SCEEEEEECTTSCEEEEEECTTCCCCHHHHHHHHHTTHHHHTTTCTTSCTTSCCCCHHHHHHHHHHHTTST
T ss_pred CEEEEEEEcCCCCEEEEEecCCcchHHHHHHHHHHHHHHHHHhcCCCCCCCCceecHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999999 699999999999999999999999999999999864
No 2
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.4e-45 Score=295.97 Aligned_cols=147 Identities=19% Similarity=0.399 Sum_probs=125.5
Q ss_pred ceeEEEEEEccCCceeeeecccccccCCChhhhHHHHHHHHHHHHHHHHhcCCCCCCCC-------------CCCCCc--
Q 030934 21 NNAHMMYVFNRNGVCLLYREWNRLLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKG-------------NLGVPQ-- 85 (169)
Q Consensus 21 m~iys~~Iink~g~~Iy~~ef~~~~~~~~~~~e~~ll~g~lhSL~~i~~klsp~~~~~~-------------~~g~~~-- 85 (169)
|+||+||||||+|+|||+|+|.+..++.+. ||+++|+|++||+++|+.+|+|...... ..|++.
T Consensus 1 M~i~sl~IiNk~GglIY~r~~~~~~~~l~s-nd~l~lag~lhsv~ai~~~ltP~~~~~~~~~~~~~~~~~~~~~g~~~~~ 79 (219)
T 3cue_A 1 MAIETILVINKSGGLIYQRNFTNDEQKLNS-NEYLILASTLHGVFAIASQLTPKALQLTQQTNIENTIPYIPYVGMSSNR 79 (219)
T ss_dssp -CEEEEEEECTTSCEEEEEECSSCCCCSCH-HHHHHHHHHHHHHHHHHHHTCCSCC-----------CCCCCSCCC----
T ss_pred CeeEEEEEEeCCCCEEeehhhccCcCCCCc-chhhhhhhhhHHHHHHHhhcCCCcccccccccccccccccccccccccc
Confidence 889999999999999999999976555664 8999999999999999999999763110 001110
Q ss_pred --------------------------------CCCCCcceeEEeeCCeEEEEEecCCceEEEEEeCCCC-----------
Q 030934 86 --------------------------------LSGQGCSFHSFRTNTYKLSFMESPSGIKIILVTHPRT----------- 122 (169)
Q Consensus 86 --------------------------------~~~~~~~~~~~~T~~ykl~~~~T~TgiKFvl~td~~~----------- 122 (169)
..-...+++++.|++|++|||+|+||+||||+||++.
T Consensus 80 ~~s~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~Td~y~l~~f~T~TGiKFVlltd~~~~~~~~s~~~~~ 159 (219)
T 3cue_A 80 SDTRNGGGNNNKHTNNEKLGSFKGDDFFKEPFTNWNKSGLRQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTD 159 (219)
T ss_dssp ------------------------CCSCCSCCCCCCSSSCCEEEESSCEEEEEECTTSCEEEEEESSCC-----------
T ss_pred cccccccccccccccccccccccccccccccccccCCCceEEEEeCCEEEEEEEcCCCCEEEEEecCCCccccccccccc
Confidence 0001347899999999999999999999999999988
Q ss_pred -------------hhHHHHHHHHHHHHHHHHhcCCCCCCCCCccchhHHHHHHHHHHhc
Q 030934 123 -------------GDLRESLKYIYNLYVEYVVKNPLYAPGTPIRSELFNTSLDQYVRTI 168 (169)
Q Consensus 123 -------------~~~~~~l~~iy~lYv~~v~kNPfy~~~~pI~s~~F~~~v~~~~~~~ 168 (169)
+++|++|++||++|||||||||||++||||+|++||++|+++++++
T Consensus 160 ~~~~~~~~s~l~e~~ir~ff~~VYelYvd~VmkNPFY~~~~pI~S~~Fd~~V~~~~~~~ 218 (219)
T 3cue_A 160 KPDRPKSTSNLAIQIADNFLRKVYCLYSDYVMKDPSYSMEMPIRSNLFDEKVKKMVENL 218 (219)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHSCTTCCTTSCCCCHHHHHHHHHHHHHH
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHHhc
Confidence 8899999999999999999999999999999999999999999986
No 3
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-44 Score=282.77 Aligned_cols=136 Identities=25% Similarity=0.534 Sum_probs=121.3
Q ss_pred ceeEEEEEEccCCceeeeecccccc-------cCCChhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcCCCCCcce
Q 030934 21 NNAHMMYVFNRNGVCLLYREWNRLL-------HTLNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCSF 93 (169)
Q Consensus 21 m~iys~~Iink~g~~Iy~~ef~~~~-------~~~~~~~e~~ll~g~lhSL~~i~~klsp~~~~~~~~g~~~~~~~~~~~ 93 (169)
|+|||||||||+|+|||+++|...+ +....+++.++++|++|||++|++|++|.+.. ++|
T Consensus 1 M~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls~~~~~-------------~~f 67 (159)
T 3cue_C 1 MGIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSKGSVK-------------NDI 67 (159)
T ss_dssp CCCCEEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSCCSSSC-------------CCE
T ss_pred CeEEEEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCCC-------------CCe
Confidence 8899999999999999999997531 11234688999999999999999999997632 368
Q ss_pred eEEeeCCeEEEEEecCCceEEEEEeCCCChhHHHHHHHHHH-HHHHHHhcCC-----CCCCC--------CCccchhHHH
Q 030934 94 HSFRTNTYKLSFMESPSGIKIILVTHPRTGDLRESLKYIYN-LYVEYVVKNP-----LYAPG--------TPIRSELFNT 159 (169)
Q Consensus 94 ~~~~T~~ykl~~~~T~TgiKFvl~td~~~~~~~~~l~~iy~-lYv~~v~kNP-----fy~~~--------~pI~s~~F~~ 159 (169)
.+++|++|++|||+|+||+||||+||+++++++++|++||+ +|||||+||| ||+++ |||+|++||+
T Consensus 68 ~~~~T~~ykl~~~eT~TgiKFvl~td~~~~~i~~~l~~iy~~lYv~yv~kNPl~~~~Fy~~~~~~~~~~~~pI~s~~Fd~ 147 (159)
T 3cue_C 68 RSISTGKYRVHTYCTASGLWFVLLSDFKQQSYTQVLQYIYSHIYVKYVSNNLLSPYDFAENENEMRGQGTRKITNRNFIS 147 (159)
T ss_dssp EEEECSSCBEEEECCSSCCEEEEECCSSSSCTHHHHHHHHHHHHHHHHHSCTTSCCSCCCSCTTTTTSCCCCCCCHHHHH
T ss_pred EEEeeCCEEEEEEEeCCCCEEEEEeCCCcchHHHHHHHHHHHHHHHHHHhCCCccccccccccccccccCcCcccHHHHH
Confidence 99999999999999999999999999999999999999998 9999999999 99999 9999999999
Q ss_pred HHHHHHHhcC
Q 030934 160 SLDQYVRTIA 169 (169)
Q Consensus 160 ~v~~~~~~~~ 169 (169)
+|++++++++
T Consensus 148 ~l~~~~~~~~ 157 (159)
T 3cue_C 148 VLESFLAPMV 157 (159)
T ss_dssp HHHHHTSCC-
T ss_pred HHHHHHHhcc
Confidence 9999998864
No 4
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=100.00 E-value=4.5e-40 Score=268.42 Aligned_cols=105 Identities=26% Similarity=0.588 Sum_probs=97.6
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcCCCCCcceeEEeeCCeEEEEEecCCceEEEEEeCCCChhHHHHHH
Q 030934 51 QQDHKLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTNTYKLSFMESPSGIKIILVTHPRTGDLRESLK 130 (169)
Q Consensus 51 ~~e~~ll~g~lhSL~~i~~klsp~~~~~~~~g~~~~~~~~~~~~~~~T~~ykl~~~~T~TgiKFvl~td~~~~~~~~~l~ 130 (169)
+|+.++++|++|||++|++|++|.+.+ .++++++|++|++|||+|+||+||||+||++.+++|++|+
T Consensus 105 sn~~L~lag~lhSLd~i~~klsp~~~s-------------~g~~~~~T~~ykl~~y~T~TgiKFVLltd~~~~~ir~~l~ 171 (219)
T 2j3t_D 105 SNEKLMLASMFHSLFAIGSQLSPEQGS-------------SGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGIDSLLR 171 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSSSSC-------------CSCSEEEESSCEEEEEECTTSCEEEEEECTTCCCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCCC-------------CCeeEEecCceEEEEEEcCCCCEEEEEecCCchHHHHHHH
Confidence 356778899999999999999996532 2478999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCccchhHHHHHHHHHHhc
Q 030934 131 YIYNLYVEYVVKNPLYAPGTPIRSELFNTSLDQYVRTI 168 (169)
Q Consensus 131 ~iy~lYv~~v~kNPfy~~~~pI~s~~F~~~v~~~~~~~ 168 (169)
+||++|+|||||||||+++|||+|++||++|+++++++
T Consensus 172 ~IyelYvd~V~kNPFY~~~~pI~s~~Fd~~v~~l~~~~ 209 (219)
T 2j3t_D 172 KIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALEVA 209 (219)
T ss_dssp HHHHHHHHHHTTCTTCCTTSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCCCCccchHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999875
No 5
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=100.00 E-value=1.4e-38 Score=244.24 Aligned_cols=133 Identities=15% Similarity=0.270 Sum_probs=115.7
Q ss_pred ce-eEEEEEEccCCceeeeecccccccCCChhhhHHHHH-HHHHHHHHHHHhcCCCCCCCCCCCCCcCCCCCcc-eeEEe
Q 030934 21 NN-AHMMYVFNRNGVCLLYREWNRLLHTLNAQQDHKLMF-GLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCS-FHSFR 97 (169)
Q Consensus 21 m~-iys~~Iink~g~~Iy~~ef~~~~~~~~~~~e~~ll~-g~lhSL~~i~~klsp~~~~~~~~g~~~~~~~~~~-~~~~~ 97 (169)
|+ +|+||||||+|+|||+++|.+..+ .+.+++.++++ +++||+.++.++++|... | .. ..+..
T Consensus 3 M~~i~~~~Ii~~~~~ply~~~~~~~~~-~~~~~~~~l~~~~i~hs~ldiv~~~~~~~~-----~--------~~l~~~~~ 68 (142)
T 2j3w_A 3 MSGSFYFVIVGHHDNPVFEMEFLPPGK-AESKDDHRHLNQFIAHAALDLVDENMWLSN-----N--------MYLKTVDK 68 (142)
T ss_dssp CCCCEEEEEECTTSCEEEEEEECCSCC-GGGHHHHHHHHHHHHHHHHHHHHHHGGGCS-----C--------SEEEEEEE
T ss_pred cceEEEEEEEeCCCCEEEEEecCCcCc-CCccHHHHHHHHHHHHHHHHHHHHhcCCCC-----c--------ceeEeeec
Confidence 77 999999999999999999986432 23345677777 899999999999987532 1 12 26667
Q ss_pred eCCeEEEEEecCCceEEEEEeCCC-ChhHHHHHHHHHHHHHHHHhcCCCCCCCCCccchhHHHHHHHHHHhc
Q 030934 98 TNTYKLSFMESPSGIKIILVTHPR-TGDLRESLKYIYNLYVEYVVKNPLYAPGTPIRSELFNTSLDQYVRTI 168 (169)
Q Consensus 98 T~~ykl~~~~T~TgiKFvl~td~~-~~~~~~~l~~iy~lYv~~v~kNPfy~~~~pI~s~~F~~~v~~~~~~~ 168 (169)
+++|++|||+|+||+||||+||++ .++++++|++||++|+|+|+ ||||++|+||+|++||++|+++++++
T Consensus 69 ~~~y~v~~~~T~tg~Kfvl~~d~~~~~~i~~~~~~iy~~Y~~~v~-NPfy~~~~pI~s~~Fd~~v~~~~~~~ 139 (142)
T 2j3w_A 69 FNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAM-NPFYEPNSPIRSSAFDRKVQFLGKKH 139 (142)
T ss_dssp ETTEEEEEEECTTCCEEEEEESSCCHHHHHHHHHHHHHHHHHHHH-STTCCTTCCCCCHHHHHHHHHHHHHH
T ss_pred ccceEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHHHHHHHHHhc-CCCCCCCCceecHHHHHHHHHHHHHh
Confidence 899999999999999999999995 88999999999999999999 99999999999999999999999875
No 6
>3pr6_A Trapp-associated protein TCA17; longin fold, vesicle tethering regulation, trapp complex, TR network, transport protein; 1.80A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1.3e-19 Score=141.51 Aligned_cols=115 Identities=15% Similarity=0.176 Sum_probs=83.4
Q ss_pred eEEEEEEccCCceeeeecccccccCCChhhhHHHHHHHHH-HHHHHHHhcCCCCCCCCCCCCCcCCCCCcceeEEeeCCe
Q 030934 23 AHMMYVFNRNGVCLLYREWNRLLHTLNAQQDHKLMFGLLF-SLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTNTY 101 (169)
Q Consensus 23 iys~~Iink~g~~Iy~~ef~~~~~~~~~~~e~~ll~g~lh-SL~~i~~klsp~~~~~~~~g~~~~~~~~~~~~~~~T~~y 101 (169)
.-.+.||||+++|||.+.+..... +. ++.+....++| |||.++++++..... + ...+. + ..+.++.+
T Consensus 10 ~~FVaIIg~~n~PLyI~~~~~~~~--~~-~~~Lk~~fi~hsSLDi~Ee~~~~~~s~--~--~~~~L----g-lL~~~e~~ 77 (162)
T 3pr6_A 10 PCFVSLIDESDKPILIYVPNEAEN--EM-NDVLKYNVLSNISLDYFESALVEWHSL--D--SKPLL----K-SIFQLEGV 77 (162)
T ss_dssp CSEEEEECTTSCEEEEECCC----------CHHHHHHHHHHHHHHHHCTTCCCCCS--S--SSCCC----E-EEEEETTE
T ss_pred CeEEEEECCCCceeEEEeCCCccc--cc-cchhHHHHHHHHHHHHHhhhhhhcccc--c--ccccc----c-eEeecCCe
Confidence 445779999999999999875421 12 23344455555 999999998632111 0 00011 1 57789999
Q ss_pred EEEEEe-cCCceEEEEEeCCC------C--hhHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 030934 102 KLSFME-SPSGIKIILVTHPR------T--GDLRESLKYIYNLYVEYVVKNPLYAPGT 150 (169)
Q Consensus 102 kl~~~~-T~TgiKFvl~td~~------~--~~~~~~l~~iy~lYv~~v~kNPfy~~~~ 150 (169)
++++|+ |+||+|||++++.+ . +++|.+|+++|++|++.++ ||||.+++
T Consensus 78 ~VYGy~iTnt~vKfVl~~d~~~~~~~~D~~~~Ik~~F~~vh~~Yvk~l~-NPFy~~~d 134 (162)
T 3pr6_A 78 SVFAMLIKQTGLKIVIGFEQKSLSGADDEFEAINQIFETVRKIYIRVKC-NPLLVSGD 134 (162)
T ss_dssp EEEEEECTTTCCEEEEEEEGGGCCCCHHHHHHHHHHHHHHHHHHHHHHT-CTTGGGSC
T ss_pred EEEEEEEcCCceEEEEEEccCCcccccchHHHHHHHHHHHHHHHHHHhc-CCCCCCCc
Confidence 999998 99999999999864 2 6899999999999999777 99999983
No 7
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=96.36 E-value=0.19 Score=39.71 Aligned_cols=99 Identities=6% Similarity=0.052 Sum_probs=64.4
Q ss_pred ceeEEEEEEccCCceee--eecccccccCCChhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcCCCCCcceeEEee
Q 030934 21 NNAHMMYVFNRNGVCLL--YREWNRLLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRT 98 (169)
Q Consensus 21 m~iys~~Iink~g~~Iy--~~ef~~~~~~~~~~~e~~ll~g~lhSL~~i~~klsp~~~~~~~~g~~~~~~~~~~~~~~~T 98 (169)
|-+|++.|+.+++...- ...+.-..=..-. ..-.--.+-+..+.+.+++.|.. -.+++.
T Consensus 2 mk~~~~~v~~~~~~~~~~l~~~~dlssf~~f~--r~sv~ef~~f~~r~il~r~~~~~-----------------r~s~~~ 62 (199)
T 3kyq_A 2 MKLYSLSVFYKGEPKAVLLKAAYDVSSFSFFQ--RSSVQEFMTFTSQLIVERSAKGS-----------------RASVKE 62 (199)
T ss_dssp CCEEEEEEEEECSSCEEEEEEEECCTTSCTTT--HHHHHHHHHHHHHHHHHTSCTTE-----------------EEEEEC
T ss_pred ceEEEEEEEEcCCCCceEEeeeccccccccee--hHhHHHHHHHHHHHHHhcCCCCC-----------------eEEEEe
Confidence 67999999988765322 3323211000000 11122336666778888876521 256788
Q ss_pred CCeEEEEEecCCceEEEEEeCCCChh--HHHHHHHHHHHHHH
Q 030934 99 NTYKLSFMESPSGIKIILVTHPRTGD--LRESLKYIYNLYVE 138 (169)
Q Consensus 99 ~~ykl~~~~T~TgiKFvl~td~~~~~--~~~~l~~iy~lYv~ 138 (169)
+.|.+|+|....|+=+++++|..-+. .-.+|.+|.+-|..
T Consensus 63 ~~y~fH~y~~~~gl~yl~itd~~yp~r~AF~fL~ei~~eF~~ 104 (199)
T 3kyq_A 63 QEYLCHVYVRSDSLAGVVIADSEYPSRVAFTLLEKVLDEFSK 104 (199)
T ss_dssp SSEEEEEEECTTSEEEEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEecCCEEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987653 34678888876655
No 8
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=95.70 E-value=0.43 Score=35.49 Aligned_cols=100 Identities=14% Similarity=0.112 Sum_probs=60.8
Q ss_pred CCceeEEEEEEccCC--ceeeeecccccccC-CChhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcCCCCCcceeE
Q 030934 19 SGNNAHMMYVFNRNG--VCLLYREWNRLLHT-LNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHS 95 (169)
Q Consensus 19 ~~m~iys~~Iink~g--~~Iy~~ef~~~~~~-~~~~~e~~ll~g~lhSL~~i~~klsp~~~~~~~~g~~~~~~~~~~~~~ 95 (169)
-.|.||++.|+-+++ ..+......-..-. ... ...+-. +-+-.+.+++++.+.. -.+
T Consensus 3 ~~Mkl~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr-~sv~ef--~~~~ar~i~~r~~~~~-----------------R~s 62 (144)
T 3bw6_A 3 MAMRIYYIGVFRSGGEKALELSEVKDLSQFGFFER-SSVGQF--MTFFAETVASRTGAGQ-----------------RQS 62 (144)
T ss_dssp CCCCEEEEEEEECCSSSCEEEEEEECCTTSCTTTT-THHHHH--HHHHHHHHHHHCCTTE-----------------EEE
T ss_pred cEEEEEEEEEEecCCCCCeEeEeeecccccChhhh-hhHHHH--HHHHHHHHHhhCCCCc-----------------eEE
Confidence 457799998886543 22333322211101 011 111111 3334677888886521 267
Q ss_pred EeeCCeEEEEEecCCceEEEEEeCCCChh--HHHHHHHHHHHHHH
Q 030934 96 FRTNTYKLSFMESPSGIKIILVTHPRTGD--LRESLKYIYNLYVE 138 (169)
Q Consensus 96 ~~T~~ykl~~~~T~TgiKFvl~td~~~~~--~~~~l~~iy~lYv~ 138 (169)
++.++|.+|++....|+=+++++|..-+. .=.+|++|.+-|..
T Consensus 63 v~~~~y~fH~~~~~~gl~~l~i~D~~yp~rvAF~~L~~i~~eF~~ 107 (144)
T 3bw6_A 63 IEEGNYIGHVYARSEGICGVLITDKEYPVRPAYTLLNKILDEYLV 107 (144)
T ss_dssp EEETTEEEEEEECTTSEEEEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred EEeCCEEEEEEEecCCEEEEEEECCCCChhHHHHHHHHHHHHHHH
Confidence 88899999999888999999999987653 23577777775554
No 9
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=95.38 E-value=0.34 Score=35.74 Aligned_cols=92 Identities=13% Similarity=0.285 Sum_probs=57.3
Q ss_pred eEEEEEEccCCceeeeecccccccCCChhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcCCCCCcceeEEeeCCeE
Q 030934 23 AHMMYVFNRNGVCLLYREWNRLLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTNTYK 102 (169)
Q Consensus 23 iys~~Iink~g~~Iy~~ef~~~~~~~~~~~e~~ll~g~lhSL~~i~~klsp~~~~~~~~g~~~~~~~~~~~~~~~T~~yk 102 (169)
|.+++|+|++|+++..|.|.... .++.+.+..-++.+ +...+.. .+++ +..++++
T Consensus 2 I~~i~i~~~~Gk~~l~k~y~~~~-----~~~~~~~~~~f~~~------v~~~~~~------------~~~~--~~~~~~~ 56 (142)
T 2vgl_S 2 IRFILIQNRAGKTRLAKWYMQFD-----DDEKQKLIEEVHAV------VTVRDAK------------HTNF--VEFRNFK 56 (142)
T ss_dssp EEEEEEEETTSCEEEEEECSCCC-----HHHHHHHHHHHHHH------HHTCCTT------------SCSE--EEETTEE
T ss_pred eEEEEEEcCCCCEEEEEeCCCCC-----hhhhHHHHHHHHHH------HhcCCCC------------CCCE--EEECCEE
Confidence 78999999999999999996321 12333333333322 2211110 1233 3455666
Q ss_pred EEEEecCCceEEEEEeCCCChhH--HHHHHHHHHHHHHHH
Q 030934 103 LSFMESPSGIKIILVTHPRTGDL--RESLKYIYNLYVEYV 140 (169)
Q Consensus 103 l~~~~T~TgiKFvl~td~~~~~~--~~~l~~iy~lYv~~v 140 (169)
+ .|....++-|+++++.+...+ -++++.+.++.-+|.
T Consensus 57 ~-vy~~~~~Lyfv~~~~~~~N~l~~le~L~~~ve~l~~yf 95 (142)
T 2vgl_S 57 I-IYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYF 95 (142)
T ss_dssp E-EEEEETTEEEEEEECTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred E-EEEEECCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5 556677899999998876544 467777777766654
No 10
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=95.37 E-value=0.47 Score=35.73 Aligned_cols=92 Identities=17% Similarity=0.262 Sum_probs=57.0
Q ss_pred eEEEEEEccCCceeeeecccccccCCChhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcCCCCCcceeEEeeCCeE
Q 030934 23 AHMMYVFNRNGVCLLYREWNRLLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTNTYK 102 (169)
Q Consensus 23 iys~~Iink~g~~Iy~~ef~~~~~~~~~~~e~~ll~g~lhSL~~i~~klsp~~~~~~~~g~~~~~~~~~~~~~~~T~~yk 102 (169)
|.+++|+|++|+++..|.|.... ..+...+..-++.+ +...+.. .+++ +..++++
T Consensus 2 I~~i~Il~~~Gk~~lsk~y~~~~-----~~~~~~~~~~~~~~------i~~~~~~------------~~~~--i~~~~~~ 56 (158)
T 1w63_Q 2 MRFMLLFSRQGKLRLQKWYLATS-----DKERKKMVRELMQV------VLARKPK------------MCSF--LEWRDLK 56 (158)
T ss_dssp EEEEEEECSSSCEEEEEESSCCC-----HHHHHHHHHHHHHH------HHTSCSS------------SCSE--EEETTEE
T ss_pred eEEEEEECCCCCEEEEEeCCCCC-----HHHHHHHHHHHHHH------HhccCCC------------CCCe--EEECCEE
Confidence 88999999999999999997421 12233333333322 2211110 1233 3456666
Q ss_pred EEEEecCCceEEEEEeCCCChhH--HHHHHHHHHHHHHHH
Q 030934 103 LSFMESPSGIKIILVTHPRTGDL--RESLKYIYNLYVEYV 140 (169)
Q Consensus 103 l~~~~T~TgiKFvl~td~~~~~~--~~~l~~iy~lYv~~v 140 (169)
+ .|....++-|+++++.+...+ -++++.+.++.-+|.
T Consensus 57 ~-vy~~~~~Lyfv~~~~~~~Nel~~le~L~~~vevl~~yf 95 (158)
T 1w63_Q 57 V-VYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYF 95 (158)
T ss_dssp E-EEEEETTEEEEEEECSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred E-EEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5 556677899999999876543 467777777666654
No 11
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=94.29 E-value=1.4 Score=34.04 Aligned_cols=123 Identities=11% Similarity=0.037 Sum_probs=72.5
Q ss_pred ceeEEEEEEccCCceeeeecccccccCCChhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcCCCCCcceeEEeeCC
Q 030934 21 NNAHMMYVFNRNGVCLLYREWNRLLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTNT 100 (169)
Q Consensus 21 m~iys~~Iink~g~~Iy~~ef~~~~~~~~~~~e~~ll~g~lhSL~~i~~klsp~~~~~~~~g~~~~~~~~~~~~~~~T~~ 100 (169)
|.+|++.--+.+|.+|....-..... . ++ +...=--++.+.+++.+... .-.+++.+.
T Consensus 2 Mi~ya~IaR~~d~~iLa~~~d~~~~~---~-~~---~~~~~~~a~~il~ki~~~~~---------------~r~s~~~~~ 59 (196)
T 2nut_C 2 MVLLTMIARVADGLPLAASMQEDEQS---G-RD---LQQYQSQAKQLFRKLNEQSP---------------TRCTLEAGA 59 (196)
T ss_dssp CCCCEEEEETTTCCEEEEECCCC---------C---HHHHHHHHHHHHHHCCTTSC---------------SEEEEEETT
T ss_pred ceEEEEEEEcCCCcEEEEeecccccc---c-cc---HHHHHHHHHHHHHhcCCCCC---------------CeEEEEeCC
Confidence 66666666666677776532211100 0 11 11111224667778866221 125778899
Q ss_pred eEEEEEecCCceEEEEEeCCCChh--HHHHHHHHHHHHHHHHhcCCCCCCCCCccchhHHHHHHHHHHh
Q 030934 101 YKLSFMESPSGIKIILVTHPRTGD--LRESLKYIYNLYVEYVVKNPLYAPGTPIRSELFNTSLDQYVRT 167 (169)
Q Consensus 101 ykl~~~~T~TgiKFvl~td~~~~~--~~~~l~~iy~lYv~~v~kNPfy~~~~pI~s~~F~~~v~~~~~~ 167 (169)
|.+| |....|+=|++++|..-+. .-.+|++|.+-|....- +-.-....|.....|+..|.++++.
T Consensus 60 y~fh-y~~~~gl~~l~i~d~~yp~r~af~fL~~i~~~F~~~~~-~~~~~~~~~~~~~~f~~~l~~~~~~ 126 (196)
T 2nut_C 60 MTFH-YIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHG-KKVPTVSRPYSFIEFDTFIQKTKKL 126 (196)
T ss_dssp EEEE-EEEETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHHT-TTTTTCCSTTTTGGGHHHHHHHHTT
T ss_pred EEEE-EEeCCCeEEEEEEcCCcchHHHHHHHHHHHHHHHHhcc-chhccccCCCchHHHHHHHHHHHHH
Confidence 9999 7778999999999987653 34688888886655321 2111112355555888888887654
No 12
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=91.65 E-value=3.3 Score=31.03 Aligned_cols=96 Identities=9% Similarity=0.183 Sum_probs=59.2
Q ss_pred CCCceeEEEEEEccCCceeeeecccccccCCChhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcCCCCCcceeEEe
Q 030934 18 ASGNNAHMMYVFNRNGVCLLYREWNRLLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFR 97 (169)
Q Consensus 18 ~~~m~iys~~Iink~g~~Iy~~ef~~~~~~~~~~~e~~ll~g~lhSL~~i~~klsp~~~~~~~~g~~~~~~~~~~~~~~~ 97 (169)
+|-.+|..++|+|++|+++..|-|...-. + ..+.+.+-.-+|.+ ++..+ +++ +.
T Consensus 8 ~sl~mI~~ililn~~Gk~~lsK~Y~~~~~--~-~~~~~~~e~~i~~~------~~r~~---------------~~i--~~ 61 (153)
T 3tjz_C 8 PSLYTVKAILILDNDGDRLFAKYYDDTYP--S-VKEQKAFEKNIFNK------THRTD---------------SEI--AL 61 (153)
T ss_dssp CCSBCEEEEEEECTTSCEEEEEECSSSSC--S-HHHHHHHHHHHHHH------HSSCC---------------CCE--EE
T ss_pred ccHHHheEEEEECCCCCEEEEEeCCCCCC--C-HHHHHHHHHHHHHH------HhCCC---------------CCE--EE
Confidence 44556999999999999999998864101 1 12233333333333 21111 122 23
Q ss_pred eCCeEEEEEecCCceEEEEEeCCCChh--HHHHHHHHHHHHHHHH
Q 030934 98 TNTYKLSFMESPSGIKIILVTHPRTGD--LRESLKYIYNLYVEYV 140 (169)
Q Consensus 98 T~~ykl~~~~T~TgiKFvl~td~~~~~--~~~~l~~iy~lYv~~v 140 (169)
.+.+++ .|.--.++-|+++++.+..+ +-++++.+.++.-+|.
T Consensus 62 ~~~~~~-vy~~~~~Lyfv~~~~~~eNel~ile~L~~~ve~l~~yf 105 (153)
T 3tjz_C 62 LEGLTV-VYKSSIDLYFYVIGSSYENELMLMTVLNCLFDSLSQML 105 (153)
T ss_dssp ETTEEE-EEEECSSCEEEEEEETTSCHHHHHHHHHHHHHHHHHHH
T ss_pred ECCEEE-EEEEECCEEEEEEEcCCCChHHHHHHHHHHHHHHHHHh
Confidence 356665 56667789999999887654 3578888887766654
No 13
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=89.94 E-value=3.1 Score=35.79 Aligned_cols=93 Identities=12% Similarity=0.211 Sum_probs=54.4
Q ss_pred ceeEEEEEEccCCceeeeecccccccCCChhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcCCCCCcceeEEeeCC
Q 030934 21 NNAHMMYVFNRNGVCLLYREWNRLLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTNT 100 (169)
Q Consensus 21 m~iys~~Iink~g~~Iy~~ef~~~~~~~~~~~e~~ll~g~lhSL~~i~~klsp~~~~~~~~g~~~~~~~~~~~~~~~T~~ 100 (169)
|+|.+++|+|++|+++..|.|.....+ +... .++.+ +..+-.... .+.+ +..+.
T Consensus 1 mMI~~i~I~~~~Gk~~l~k~y~~~~~~----~~~~----~f~~~--v~~~~~~~~--------------~~~~--i~~~~ 54 (423)
T 1w63_M 1 MSASAVYVLDLKGKVLICRNYRGDVDM----SEVE----HFMPI--LMEKEEEGM--------------LSPI--LAHGG 54 (423)
T ss_dssp -CCCEEEEEETTTEECSCBCCSCSCTT----TTHH----HHHHH--HHHHHHTSC--------------CCSE--EEETT
T ss_pred CceEEEEEECCCCCEEEEEecCCCCCh----HHHH----HHHHH--HhhccccCC--------------CCCE--EEECC
Confidence 679999999999999999999742221 1111 11111 111100000 1123 34566
Q ss_pred eEEEEEecCCceEEEEEeCCCChhH--HHHHHHHHHHHHHHH
Q 030934 101 YKLSFMESPSGIKIILVTHPRTGDL--RESLKYIYNLYVEYV 140 (169)
Q Consensus 101 ykl~~~~T~TgiKFvl~td~~~~~~--~~~l~~iy~lYv~~v 140 (169)
+++ .|....++-|+++++.+...+ -++|+.+.++.-+|.
T Consensus 55 ~~~-vy~~~~~Lyfv~~~~~~~n~l~~le~L~~~v~~l~~yf 95 (423)
T 1w63_M 55 VRF-MWIKHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYF 95 (423)
T ss_dssp EEE-EEEEETTEEEEEEESSCCCTHHHHHHHHHHHHHHHHHS
T ss_pred EEE-EEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 654 456667899999998876543 467777777666654
No 14
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=88.37 E-value=5.3 Score=34.46 Aligned_cols=90 Identities=13% Similarity=0.197 Sum_probs=56.2
Q ss_pred eEEEEEEccCCceeeeecccccccCCChhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcCCCCCcceeEEeeCCeE
Q 030934 23 AHMMYVFNRNGVCLLYREWNRLLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTNTYK 102 (169)
Q Consensus 23 iys~~Iink~g~~Iy~~ef~~~~~~~~~~~e~~ll~g~lhSL~~i~~klsp~~~~~~~~g~~~~~~~~~~~~~~~T~~yk 102 (169)
|.+++|+|++|+++..|.|..... . + . ++.+..++....... .+.+ +.+++++
T Consensus 2 I~~i~I~~~~Gk~~l~k~y~~~~~---~-~-~---------~~~f~~~v~~~~~~~-----------~~~i--i~~~~~~ 54 (435)
T 2vgl_M 2 IGGLFIYNHKGEVLISRVYRDDIG---R-N-A---------VDAFRVNVIHARQQV-----------RSPV--TNIARTS 54 (435)
T ss_dssp CCEEEEECTTCCEEEEEECSSSCC---H-H-H---------HHHHHHHTTTCSSCC-----------CCSE--EEETTEE
T ss_pred eEEEEEECCCCCEEEEEecCCCCC---h-h-H---------HHHHHHHHhccccCC-----------CCCE--EEECCEE
Confidence 789999999999999999974211 1 1 1 133333444322110 1223 4556665
Q ss_pred EEEEecCCceEEEEEeCCCChhH--HHHHHHHHHHHHHHH
Q 030934 103 LSFMESPSGIKIILVTHPRTGDL--RESLKYIYNLYVEYV 140 (169)
Q Consensus 103 l~~~~T~TgiKFvl~td~~~~~~--~~~l~~iy~lYv~~v 140 (169)
+ .|....++-|+++++.+...+ -++|+.+.++.-+|.
T Consensus 55 ~-vy~~~~~Lyfv~~~~~~~n~l~~le~L~~~v~vl~~yf 93 (435)
T 2vgl_M 55 F-FHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYF 93 (435)
T ss_dssp E-EEEEETTEEEEEEESSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred E-EEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4 556777899999998876543 367777777666654
No 15
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=88.07 E-value=7.5 Score=29.85 Aligned_cols=73 Identities=8% Similarity=0.017 Sum_probs=46.3
Q ss_pred eeEEeeCCeEEEEEecCCceEEEEEeCCCChh--HHHHHHHHHHHHHHHHhcCCCCCCCCCccchhHHHHHHHHHHh
Q 030934 93 FHSFRTNTYKLSFMESPSGIKIILVTHPRTGD--LRESLKYIYNLYVEYVVKNPLYAPGTPIRSELFNTSLDQYVRT 167 (169)
Q Consensus 93 ~~~~~T~~ykl~~~~T~TgiKFvl~td~~~~~--~~~~l~~iy~lYv~~v~kNPfy~~~~pI~s~~F~~~v~~~~~~ 167 (169)
-.++..+.|.+| |..-.|+-|++++|..-+. .-.+|.+|.+-|....- +--.....+--+..|+..++++++.
T Consensus 43 k~s~~~~~y~fH-yl~~~gl~yl~i~d~~yp~r~af~fL~~i~~eF~~~~~-~~~~~~~~~~~~~~f~~~l~~~~~~ 117 (189)
T 4b93_A 43 KLTYSHGNYLFH-YICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTYG-SRAQTALPYAMNSEFSSVLAAQLKH 117 (189)
T ss_dssp EEEEEETTEEEE-EEEETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHHG-GGGGTCCTTTTHHHHHHHHHHHHHH
T ss_pred eEEEEECCEEEE-EEEeCCeEEEEEEcCccCHHHHHHHHHHHHHHHHhhcc-ccccccCCccccchhhHHHHHHHHh
Confidence 367889999999 6778999999999987542 34577777775544221 1111111112345688777777654
No 16
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=79.49 E-value=18 Score=27.40 Aligned_cols=89 Identities=12% Similarity=0.092 Sum_probs=56.4
Q ss_pred CCCceeEEEEEEccCCceeeeecccccccCCChhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcCCCCCcceeEEe
Q 030934 18 ASGNNAHMMYVFNRNGVCLLYREWNRLLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFR 97 (169)
Q Consensus 18 ~~~m~iys~~Iink~g~~Iy~~ef~~~~~~~~~~~e~~ll~g~lhSL~~i~~klsp~~~~~~~~g~~~~~~~~~~~~~~~ 97 (169)
.-+|.+.+ .+|-|.|..|.+ +.... . | ... -.+.+.+++.+.. .-.+++
T Consensus 41 ~~~M~ilY-a~VaRG~~VLae--~t~~~----g-n-f~~------iak~ll~kl~~~~----------------~r~s~~ 89 (169)
T 2vx8_A 41 NKGMAILF-AVVARGTTILAK--HAWCG----G-N-FLE------VTEQILAKIPSEN----------------NKLTYS 89 (169)
T ss_dssp TSSSCCCE-EEEEETTEEEEE--EESSC----B-S-HHH------HHHHHHTTSCSSC----------------EEEEEE
T ss_pred CCCCceEE-EEEEcCCEEEEE--eccCC----C-C-HHH------HHHHHHhhCCCCC----------------CceEEE
Confidence 44687664 445676666654 33211 1 1 111 1466677776622 125778
Q ss_pred eCCeEEEEEecCCceEEEEEeCCCChh--HHHHHHHHHHHHHH
Q 030934 98 TNTYKLSFMESPSGIKIILVTHPRTGD--LRESLKYIYNLYVE 138 (169)
Q Consensus 98 T~~ykl~~~~T~TgiKFvl~td~~~~~--~~~~l~~iy~lYv~ 138 (169)
.+.|.+|++. -.|+=|++++|..-+. .-.+|++|.+-|.+
T Consensus 90 ~~~y~fHyl~-~ngl~yl~I~D~~yp~r~AF~fLedI~~eF~~ 131 (169)
T 2vx8_A 90 HGNYLFHYIC-QDRIVYLCITDDDFERSRAFSFLNEVKKRFQT 131 (169)
T ss_dssp ETTEEEEEEE-ETTEEEEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred ECCEEEEEEE-ECCEEEEEEEccccchHHHHHHHHHHHHHHHH
Confidence 8999999998 4799999999987542 44677777776655
No 17
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=65.81 E-value=32 Score=26.11 Aligned_cols=71 Identities=10% Similarity=0.133 Sum_probs=44.9
Q ss_pred eEEeeCCeEEEEEecCCceEEEEEeCCCChh--HHHHHHHHHHHHHHHHhcCCCCCCCCCc-cchhHHHHHHHHHHh
Q 030934 94 HSFRTNTYKLSFMESPSGIKIILVTHPRTGD--LRESLKYIYNLYVEYVVKNPLYAPGTPI-RSELFNTSLDQYVRT 167 (169)
Q Consensus 94 ~~~~T~~ykl~~~~T~TgiKFvl~td~~~~~--~~~~l~~iy~lYv~~v~kNPfy~~~~pI-~s~~F~~~v~~~~~~ 167 (169)
.+++.+.|.+|+.. -.|+-|++++|...+. .-.||.+|.+-|...-- +- +....|- -+..|+..|++.++.
T Consensus 96 ~t~~~~~y~fHyl~-~dgl~yl~i~D~~~~rr~aF~FLedI~~eF~~~yg-~~-~~ta~pya~~~eF~~~L~~~M~~ 169 (173)
T 4afi_A 96 LTYSHGNYLFHYIC-QDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTYG-SR-AQTALPYAMNSEFSSVLAAQLKH 169 (173)
T ss_dssp EEEEETTEEEEEEE-ETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHHG-GG-GGTCCTTTTHHHHHHHHHHHHHH
T ss_pred EEEEECCEEEEEEE-ECCEEEEEEECCccChhHHHHHHHHHHHHHHHHhc-hh-hhhccCcchhHHHHHHHHHHHHH
Confidence 57788999999988 4899999999987642 23567777665544211 10 0011111 134688888887764
No 18
>2x5c_A Hypothetical protein ORF131; viral protein; HET: GOL; 1.80A {Pyrobaculum spherical virus}
Probab=58.66 E-value=23 Score=25.06 Aligned_cols=42 Identities=31% Similarity=0.557 Sum_probs=32.1
Q ss_pred eEEEEEecCCceEEEEEeCCC-------ChhHHHHHHHHHHH--HHHHHhc
Q 030934 101 YKLSFMESPSGIKIILVTHPR-------TGDLRESLKYIYNL--YVEYVVK 142 (169)
Q Consensus 101 ykl~~~~T~TgiKFvl~td~~-------~~~~~~~l~~iy~l--Yv~~v~k 142 (169)
-.++..+|-.|+|.+++-.++ ..++..+|+++.+. =.+||+|
T Consensus 62 gsvsivetkngykylvirhpdggthtvpktdisailkelcevkkdleyvlk 112 (131)
T 2x5c_A 62 GSVSIVETKNGYKYLVIRHPDGGTHTVPKTDISAILKELCEVKKDLEYVLK 112 (131)
T ss_dssp EEEEEEECTTSCEEEEEECTTSCEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEecCCcEEEEEECCCCCccccccccHHHHHHHHHHHHHhHHHHHH
Confidence 567889999999999998775 25788888888773 3556653
No 19
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module, P-BODY component, asymmetric assembly; 2.31A {Homo sapiens}
Probab=49.77 E-value=8.8 Score=23.91 Aligned_cols=16 Identities=13% Similarity=0.308 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHh
Q 030934 126 RESLKYIYNLYVEYVV 141 (169)
Q Consensus 126 ~~~l~~iy~lYv~~v~ 141 (169)
.+|+++||++|++-+.
T Consensus 28 ~~Fl~~IHeAYl~sl~ 43 (51)
T 2wx3_A 28 SSFLSTLHEVYLQVLT 43 (51)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5799999999998443
No 20
>3bua_E HSNM1B, DNA cross-LINK repair 1B protein; TRF2 TRFH domain dimerization domain apollo peptide, alternative splicing, cell cycle; HET: DNA; 2.50A {Homo sapiens}
Probab=47.44 E-value=3.8 Score=23.43 Aligned_cols=30 Identities=20% Similarity=0.415 Sum_probs=23.4
Q ss_pred HHHHHHhcCCCCCCCCCccchhHHHHHHHHH
Q 030934 135 LYVEYVVKNPLYAPGTPIRSELFNTSLDQYV 165 (169)
Q Consensus 135 lYv~~v~kNPfy~~~~pI~s~~F~~~v~~~~ 165 (169)
+=.+|++ -|..-......++.||++|+.+.
T Consensus 6 LALKYLL-TPv~~l~a~~Ssr~FD~QVEK~~ 35 (36)
T 3bua_E 6 LALKYLL-TPVNFFQAGYSSRRFDQQVEKYH 35 (36)
T ss_pred HHHHHHh-hhHHHHhcccchhhHHHHHHHhc
Confidence 4467777 77766777889999999999764
No 21
>4er8_A Tnparep for protein; protein-DNA complex, guide sequence, catalytic tyrosine, RNA recognition motif, transposase, HUH motif, DNA binding PROT complex; HET: DNA; 2.60A {Escherichia coli}
Probab=44.79 E-value=92 Score=23.00 Aligned_cols=68 Identities=12% Similarity=0.156 Sum_probs=50.2
Q ss_pred eEEEEEe-cCCceEEEEEeCCCChhHHHHHHHHHHHHHHHHhcCCCCCCC---CCccchhHHHHHHHHHHhc
Q 030934 101 YKLSFME-SPSGIKIILVTHPRTGDLRESLKYIYNLYVEYVVKNPLYAPG---TPIRSELFNTSLDQYVRTI 168 (169)
Q Consensus 101 ykl~~~~-T~TgiKFvl~td~~~~~~~~~l~~iy~lYv~~v~kNPfy~~~---~pI~s~~F~~~v~~~~~~~ 168 (169)
+.|++|+ -|..+-+|+.+.....++..+++.+-..|.++.-+-++++.. ..|+++..-.++-+++...
T Consensus 48 ~~i~A~vlMpNH~Hll~~~p~~~~~ls~~~~~~k~~~~~~~~~~~~WQ~ry~~~~i~~e~~l~~~~~YI~~N 119 (165)
T 4er8_A 48 FEINAWVVLPEHMHCIWTLPEGDDDFSSRWREIKKQFTHACGLKNIWQPRFWEHAIRNTKDYRHHVDYIYIN 119 (165)
T ss_dssp CEEEEEEECSSEEEEEEECCTTCCCHHHHHHHHHHHHHHHTTCSSCBCSSCEEEECCSHHHHHHHHHHHHHH
T ss_pred cEEEEEEEcCCceEEEEEeCCcchhHHHHHHHHHHHhHHhcccCcCcccCccceEECCHHHHHHHHHHHHhC
Confidence 5677776 667777777666667789999999988888887667777653 5788877777776776543
No 22
>3t12_B Gliding protein MGLB; G-domain containing protein, bacterial polarity, motility, homodimeric GAP protein, POLE localisation; HET: GDP; 2.20A {Thermus thermophilus} PDB: 3t1q_B*
Probab=42.58 E-value=95 Score=22.54 Aligned_cols=83 Identities=14% Similarity=0.149 Sum_probs=54.6
Q ss_pred eEEEEEEccCCceeeeec--ccccccCCChhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcCCCCCcceeEEeeCC
Q 030934 23 AHMMYVFNRNGVCLLYRE--WNRLLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTNT 100 (169)
Q Consensus 23 iys~~Iink~g~~Iy~~e--f~~~~~~~~~~~e~~ll~g~lhSL~~i~~klsp~~~~~~~~g~~~~~~~~~~~~~~~T~~ 100 (169)
+-+..+++|+|.+|-+.. |... ..+.+--.-+.++.+-+...+++.+.-..- .-...+.++
T Consensus 26 v~~~~lvd~dG~vIa~~~~~~~~~--~~d~~~lAAl~A~~~~a~~~la~~Lge~~~---------------~~l~~eGe~ 88 (136)
T 3t12_B 26 ARYALLIDRKGFVLAHKEALWAPK--PPPLDTLATLVASNAAATQALAKLLGEARF---------------QEEVHQGER 88 (136)
T ss_dssp CSEEEEEETTC-CCEEEECTTSCC--CSCHHHHHHHHHHHHHHHHHHHHHTTCSCC---------------CCEEEECSS
T ss_pred CeEEEEEcCCCCEEEEeccccCCC--CCcHHHHHHHHHHHHHHHHHHHHHHCCCch---------------hHheEEcCc
Confidence 556889999999998863 3221 112222344556667788888888753321 113456788
Q ss_pred eEEEEEecCCceEEEEEeCCCC
Q 030934 101 YKLSFMESPSGIKIILVTHPRT 122 (169)
Q Consensus 101 ykl~~~~T~TgiKFvl~td~~~ 122 (169)
..+|+...-...=.+++.|.+.
T Consensus 89 ~~i~i~~vg~~~iLvvifd~~~ 110 (136)
T 3t12_B 89 MGLYVDEAGEHALLVLVFDETA 110 (136)
T ss_dssp CEEEEEESSTTEEEEEEECTTS
T ss_pred CCEEEEEcCCCEEEEEEeCCCC
Confidence 9999999877788888899875
No 23
>2wx4_A DCP1, decapping protein 1; asymmetric assembly, trimerization module, mRNA decapping, P-BODY component, structural protein; 2.80A {Drosophila melanogaster}
Probab=34.82 E-value=14 Score=22.45 Aligned_cols=15 Identities=13% Similarity=0.173 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHH
Q 030934 126 RESLKYIYNLYVEYV 140 (169)
Q Consensus 126 ~~~l~~iy~lYv~~v 140 (169)
.+|+.+||++|++-+
T Consensus 26 ~~Fl~~iHeAYl~sl 40 (46)
T 2wx4_A 26 KEFANKLHKAYLNGC 40 (46)
T ss_dssp TTHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHH
Confidence 469999999999844
No 24
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=22.10 E-value=47 Score=23.58 Aligned_cols=23 Identities=13% Similarity=0.063 Sum_probs=11.2
Q ss_pred CCCCCCCCCCceeEEEEEEccCC
Q 030934 11 PSPPVPTASGNNAHMMYVFNRNG 33 (169)
Q Consensus 11 ~~~~~~~~~~m~iys~~Iink~g 33 (169)
+.++.+..++|.-+.+.|+|..|
T Consensus 9 ~~~~~~~~~~~~~~ki~vvG~~~ 31 (190)
T 3con_A 9 SGRENLYFQGMTEYKLVVVGAGG 31 (190)
T ss_dssp ----------CEEEEEEEECSTT
T ss_pred cccccccccccceeEEEEECcCC
Confidence 44567788999889999999863
Done!