Query 030935
Match_columns 169
No_of_seqs 202 out of 1633
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 06:47:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030935.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030935hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10294 Methyltransf_16: Puta 100.0 4.1E-29 8.8E-34 186.7 9.7 133 34-169 3-149 (173)
2 COG3897 Predicted methyltransf 99.7 1.8E-18 3.8E-23 129.2 6.3 113 45-164 54-167 (218)
3 COG2264 PrmA Ribosomal protein 99.7 8.2E-17 1.8E-21 128.5 12.4 145 15-169 105-256 (300)
4 PF05175 MTS: Methyltransferas 99.7 1.4E-16 3.1E-21 118.5 12.1 109 53-169 18-133 (170)
5 KOG3201 Uncharacterized conser 99.7 2.2E-18 4.7E-23 125.2 1.7 121 46-168 5-132 (201)
6 COG2227 UbiG 2-polyprenyl-3-me 99.7 2.2E-17 4.8E-22 127.2 7.3 97 69-169 58-154 (243)
7 KOG2793 Putative N2,N2-dimethy 99.7 4.6E-16 1E-20 121.3 11.0 129 37-168 42-191 (248)
8 PF06325 PrmA: Ribosomal prote 99.7 1E-15 2.2E-20 122.8 11.8 123 33-168 128-251 (295)
9 KOG1270 Methyltransferases [Co 99.6 3.4E-16 7.4E-21 121.7 6.8 100 68-169 87-188 (282)
10 PF12847 Methyltransf_18: Meth 99.6 1.5E-15 3.4E-20 104.6 9.2 97 70-169 1-104 (112)
11 TIGR00477 tehB tellurite resis 99.6 6.1E-15 1.3E-19 112.0 11.5 97 68-169 28-126 (195)
12 PRK11207 tellurite resistance 99.6 8.3E-15 1.8E-19 111.5 12.0 97 68-169 28-127 (197)
13 COG4123 Predicted O-methyltran 99.6 8.6E-15 1.9E-19 114.2 12.0 124 37-169 18-163 (248)
14 PLN02396 hexaprenyldihydroxybe 99.6 4.2E-15 9E-20 120.8 10.3 98 69-169 130-228 (322)
15 PF13847 Methyltransf_31: Meth 99.6 7.8E-15 1.7E-19 106.9 9.6 97 70-169 3-103 (152)
16 PLN02244 tocopherol O-methyltr 99.6 4E-14 8.6E-19 116.1 14.7 111 56-169 99-216 (340)
17 TIGR00406 prmA ribosomal prote 99.6 5.1E-14 1.1E-18 113.0 14.5 126 33-169 126-252 (288)
18 COG2813 RsmC 16S RNA G1207 met 99.6 3.6E-14 7.8E-19 113.0 12.2 118 47-169 135-259 (300)
19 PRK12335 tellurite resistance 99.6 7.1E-14 1.5E-18 112.1 14.1 96 69-169 119-216 (287)
20 PRK15001 SAM-dependent 23S rib 99.6 3.1E-14 6.8E-19 117.8 12.2 120 48-169 206-333 (378)
21 PRK11036 putative S-adenosyl-L 99.6 3.6E-14 7.8E-19 111.8 11.5 97 70-169 44-142 (255)
22 TIGR00537 hemK_rel_arch HemK-r 99.6 7.3E-14 1.6E-18 104.5 12.0 106 54-169 7-133 (179)
23 PRK00517 prmA ribosomal protei 99.5 1.5E-13 3.3E-18 108.1 13.8 120 33-169 86-206 (250)
24 PF08241 Methyltransf_11: Meth 99.5 1.8E-14 3.8E-19 95.7 6.3 89 75-169 1-90 (95)
25 PRK15068 tRNA mo(5)U34 methylt 99.5 2.6E-13 5.7E-18 110.5 12.9 114 50-169 103-219 (322)
26 TIGR00452 methyltransferase, p 99.5 3.4E-13 7.5E-18 109.3 13.3 100 65-169 116-218 (314)
27 PF08242 Methyltransf_12: Meth 99.5 5.1E-15 1.1E-19 100.2 2.1 93 75-169 1-96 (99)
28 PF03848 TehB: Tellurite resis 99.5 1.7E-13 3.7E-18 103.6 10.5 98 67-169 27-126 (192)
29 PLN02336 phosphoethanolamine N 99.5 3.7E-13 8.1E-18 114.6 13.4 114 52-169 248-362 (475)
30 COG2226 UbiE Methylase involve 99.5 3.9E-13 8.5E-18 104.7 12.1 113 47-169 34-149 (238)
31 PRK09489 rsmC 16S ribosomal RN 99.5 2.6E-13 5.6E-18 111.3 11.6 93 71-169 197-296 (342)
32 PRK14967 putative methyltransf 99.5 7.9E-13 1.7E-17 102.3 12.8 111 53-169 20-152 (223)
33 PRK14968 putative methyltransf 99.5 6.8E-13 1.5E-17 99.2 12.0 111 50-169 7-141 (188)
34 PRK10258 biotin biosynthesis p 99.5 4.4E-13 9.4E-18 105.2 11.4 103 59-169 31-133 (251)
35 PRK01683 trans-aconitate 2-met 99.5 6.3E-13 1.4E-17 104.7 12.2 102 59-169 20-123 (258)
36 PTZ00098 phosphoethanolamine N 99.5 4.1E-13 8.8E-18 106.5 11.1 114 50-169 32-149 (263)
37 PRK14103 trans-aconitate 2-met 99.5 3.6E-13 7.7E-18 106.1 10.7 92 67-169 26-119 (255)
38 PLN02233 ubiquinone biosynthes 99.5 1.5E-12 3.3E-17 103.1 14.0 97 68-169 71-175 (261)
39 TIGR02752 MenG_heptapren 2-hep 99.5 1.6E-12 3.5E-17 100.6 13.7 100 67-169 42-144 (231)
40 PF02353 CMAS: Mycolic acid cy 99.5 6.7E-13 1.5E-17 105.8 11.5 110 55-169 47-159 (273)
41 PRK00107 gidB 16S rRNA methylt 99.5 1.7E-12 3.7E-17 98.1 12.9 91 70-169 45-138 (187)
42 PRK05134 bifunctional 3-demeth 99.5 1.1E-12 2.3E-17 101.8 12.0 110 57-169 35-144 (233)
43 COG2890 HemK Methylase of poly 99.5 5.8E-13 1.3E-17 106.5 10.5 92 53-150 94-187 (280)
44 PF13489 Methyltransf_23: Meth 99.5 1.5E-13 3.3E-18 99.9 6.6 89 68-169 20-108 (161)
45 PF01209 Ubie_methyltran: ubiE 99.5 5.9E-13 1.3E-17 103.9 10.0 111 49-169 32-146 (233)
46 TIGR00138 gidB 16S rRNA methyl 99.4 1.3E-12 2.9E-17 98.2 11.0 92 69-169 41-135 (181)
47 COG2230 Cfa Cyclopropane fatty 99.4 1.9E-12 4.2E-17 102.8 11.9 108 55-169 57-169 (283)
48 smart00828 PKS_MT Methyltransf 99.4 1.7E-12 3.6E-17 100.1 10.6 95 72-169 1-97 (224)
49 TIGR02021 BchM-ChlM magnesium 99.4 2.4E-12 5.1E-17 99.2 11.4 97 68-169 53-151 (219)
50 PRK08317 hypothetical protein; 99.4 5.5E-12 1.2E-16 97.2 13.1 114 52-169 1-117 (241)
51 TIGR02469 CbiT precorrin-6Y C5 99.4 1.6E-11 3.6E-16 85.5 13.8 105 58-169 7-115 (124)
52 PRK08287 cobalt-precorrin-6Y C 99.4 1.6E-11 3.6E-16 92.4 14.4 103 59-169 20-124 (187)
53 TIGR01983 UbiG ubiquinone bios 99.4 5.3E-12 1.2E-16 97.2 11.8 98 69-169 44-142 (224)
54 TIGR03533 L3_gln_methyl protei 99.4 1.2E-11 2.5E-16 99.2 14.0 97 70-169 121-244 (284)
55 PF08003 Methyltransf_9: Prote 99.4 6.1E-12 1.3E-16 100.4 12.0 115 51-169 97-212 (315)
56 PF13649 Methyltransf_25: Meth 99.4 5E-13 1.1E-17 90.9 5.1 92 74-169 1-100 (101)
57 PRK05785 hypothetical protein; 99.4 6.3E-12 1.4E-16 97.6 11.8 88 70-168 51-139 (226)
58 PLN02585 magnesium protoporphy 99.4 5.4E-12 1.2E-16 102.4 11.6 89 69-164 143-239 (315)
59 PRK13944 protein-L-isoaspartat 99.4 1.6E-11 3.5E-16 93.9 13.6 106 55-169 57-166 (205)
60 PRK00216 ubiE ubiquinone/menaq 99.4 1.5E-11 3.3E-16 95.0 13.4 97 69-169 50-151 (239)
61 PF13659 Methyltransf_26: Meth 99.4 8.9E-13 1.9E-17 91.5 5.9 97 71-169 1-108 (117)
62 PRK11873 arsM arsenite S-adeno 99.4 1E-11 2.2E-16 98.6 12.7 98 68-169 75-176 (272)
63 PRK11705 cyclopropane fatty ac 99.4 7.8E-12 1.7E-16 104.1 11.9 100 61-169 158-260 (383)
64 TIGR00080 pimt protein-L-isoas 99.4 1.6E-11 3.4E-16 94.5 12.7 106 54-169 61-170 (215)
65 PRK14966 unknown domain/N5-glu 99.4 1.7E-11 3.6E-16 102.3 13.5 93 52-149 235-329 (423)
66 TIGR03704 PrmC_rel_meth putati 99.4 2E-11 4.4E-16 96.2 13.0 94 53-150 68-164 (251)
67 PRK10909 rsmD 16S rRNA m(2)G96 99.4 1.1E-11 2.4E-16 94.5 10.9 96 69-168 52-151 (199)
68 TIGR00536 hemK_fam HemK family 99.3 2E-11 4.4E-16 97.7 12.9 113 52-169 95-237 (284)
69 PRK11805 N5-glutamine S-adenos 99.3 2.8E-11 6.1E-16 98.0 13.7 95 72-169 135-256 (307)
70 COG2263 Predicted RNA methylas 99.3 1.6E-11 3.5E-16 91.8 11.1 77 66-149 41-118 (198)
71 PRK15451 tRNA cmo(5)U34 methyl 99.3 1.6E-11 3.6E-16 96.4 11.7 96 70-169 56-157 (247)
72 PF05401 NodS: Nodulation prot 99.3 5E-12 1.1E-16 95.3 7.5 93 71-169 44-139 (201)
73 TIGR02072 BioC biotin biosynth 99.3 2.1E-11 4.5E-16 94.1 11.2 94 69-169 33-128 (240)
74 PRK13942 protein-L-isoaspartat 99.3 4.3E-11 9.4E-16 92.1 12.8 106 54-169 60-169 (212)
75 TIGR03534 RF_mod_PrmC protein- 99.3 5.1E-11 1.1E-15 93.0 13.2 114 50-169 68-210 (251)
76 PRK01544 bifunctional N5-gluta 99.3 3.9E-11 8.4E-16 103.2 13.1 77 71-150 139-217 (506)
77 PRK00312 pcm protein-L-isoaspa 99.3 7.5E-11 1.6E-15 90.5 13.3 105 55-169 63-168 (212)
78 TIGR03587 Pse_Me-ase pseudamin 99.3 2.2E-11 4.8E-16 93.2 10.3 89 70-167 43-135 (204)
79 TIGR01177 conserved hypothetic 99.3 6.5E-11 1.4E-15 96.7 13.6 110 55-169 167-287 (329)
80 PRK09328 N5-glutamine S-adenos 99.3 6.4E-11 1.4E-15 93.9 13.1 94 51-149 89-185 (275)
81 PRK06202 hypothetical protein; 99.3 4.6E-11 9.9E-16 92.8 12.0 94 69-168 59-160 (232)
82 TIGR00740 methyltransferase, p 99.3 4.3E-11 9.2E-16 93.4 11.4 96 70-169 53-154 (239)
83 PLN02336 phosphoethanolamine N 99.3 3.2E-11 7E-16 102.8 11.4 100 67-169 34-135 (475)
84 KOG1499 Protein arginine N-met 99.3 1.2E-11 2.5E-16 100.1 8.0 103 62-168 52-159 (346)
85 PRK07580 Mg-protoporphyrin IX 99.3 3.6E-11 7.8E-16 92.8 10.5 93 69-168 62-158 (230)
86 TIGR00095 RNA methyltransferas 99.3 4.3E-11 9.2E-16 90.6 10.6 94 68-164 47-145 (189)
87 PRK00121 trmB tRNA (guanine-N( 99.3 2.7E-11 5.9E-16 92.5 9.5 98 70-169 40-149 (202)
88 PLN02490 MPBQ/MSBQ methyltrans 99.3 5.9E-11 1.3E-15 97.1 12.0 94 70-169 113-208 (340)
89 PRK06922 hypothetical protein; 99.3 3.1E-11 6.7E-16 105.1 10.6 100 68-169 416-530 (677)
90 PRK00377 cbiT cobalt-precorrin 99.3 1.5E-10 3.3E-15 88.0 13.2 99 65-169 35-138 (198)
91 COG2518 Pcm Protein-L-isoaspar 99.3 2.5E-11 5.5E-16 92.4 8.7 139 17-169 23-162 (209)
92 PRK15128 23S rRNA m(5)C1962 me 99.3 4.8E-11 1E-15 99.7 10.6 97 70-169 220-332 (396)
93 COG4976 Predicted methyltransf 99.3 1.1E-12 2.5E-17 100.5 0.6 108 55-169 111-218 (287)
94 TIGR01934 MenG_MenH_UbiE ubiqu 99.2 2.5E-10 5.4E-15 87.3 12.8 96 69-169 38-136 (223)
95 PRK13168 rumA 23S rRNA m(5)U19 99.2 1.6E-10 3.4E-15 98.0 12.7 105 55-164 282-389 (443)
96 PRK11783 rlmL 23S rRNA m(2)G24 99.2 6.7E-11 1.4E-15 105.3 10.1 98 70-169 538-649 (702)
97 TIGR02716 C20_methyl_CrtF C-20 99.2 4E-10 8.7E-15 91.0 13.2 106 59-169 138-247 (306)
98 TIGR02081 metW methionine bios 99.2 1.8E-10 3.9E-15 87.2 9.8 91 70-168 13-104 (194)
99 PRK11727 23S rRNA mA1618 methy 99.2 2.7E-10 5.8E-15 92.6 11.3 83 70-154 114-204 (321)
100 PF03602 Cons_hypoth95: Conser 99.2 6E-11 1.3E-15 89.4 6.7 96 69-167 41-144 (183)
101 PRK07402 precorrin-6B methylas 99.2 1.1E-09 2.3E-14 83.1 13.0 107 55-169 25-135 (196)
102 KOG1500 Protein arginine N-met 99.2 2.2E-10 4.7E-15 92.5 9.4 101 63-168 170-274 (517)
103 PRK04266 fibrillarin; Provisio 99.2 8.4E-10 1.8E-14 85.8 12.3 113 47-169 45-169 (226)
104 PHA03412 putative methyltransf 99.1 3.6E-10 7.7E-15 87.9 9.8 110 47-169 30-156 (241)
105 COG4106 Tam Trans-aconitate me 99.1 2.6E-10 5.7E-15 86.9 8.6 94 67-169 27-122 (257)
106 PRK10901 16S rRNA methyltransf 99.1 1.2E-09 2.5E-14 92.3 13.4 100 68-169 242-365 (427)
107 PRK03522 rumB 23S rRNA methylu 99.1 5.4E-10 1.2E-14 90.8 10.8 89 69-164 172-263 (315)
108 TIGR03840 TMPT_Se_Te thiopurin 99.1 8.5E-10 1.8E-14 85.0 11.3 110 54-169 19-145 (213)
109 COG2242 CobL Precorrin-6B meth 99.1 1.8E-09 4E-14 80.8 12.3 97 65-169 29-128 (187)
110 TIGR02085 meth_trns_rumB 23S r 99.1 7.9E-10 1.7E-14 91.9 10.9 92 69-168 232-326 (374)
111 smart00138 MeTrc Methyltransfe 99.1 7.5E-10 1.6E-14 87.9 10.3 98 70-169 99-235 (264)
112 KOG2920 Predicted methyltransf 99.1 3.6E-11 7.8E-16 94.9 2.6 110 46-159 89-216 (282)
113 PLN02672 methionine S-methyltr 99.1 7.3E-10 1.6E-14 101.6 11.2 95 53-149 100-213 (1082)
114 TIGR00091 tRNA (guanine-N(7)-) 99.1 6.5E-10 1.4E-14 84.3 9.0 98 70-169 16-125 (194)
115 PLN02781 Probable caffeoyl-CoA 99.1 7.1E-10 1.5E-14 86.6 9.4 105 59-169 57-171 (234)
116 PLN03075 nicotianamine synthas 99.1 2.2E-09 4.7E-14 86.2 12.3 97 70-169 123-226 (296)
117 smart00650 rADc Ribosomal RNA 99.1 2.4E-09 5.3E-14 79.4 11.5 95 60-163 3-98 (169)
118 PRK13943 protein-L-isoaspartat 99.1 3.4E-09 7.4E-14 86.3 13.0 103 57-169 67-173 (322)
119 PHA03411 putative methyltransf 99.1 2.7E-09 5.9E-14 84.7 11.6 93 47-152 45-139 (279)
120 cd02440 AdoMet_MTases S-adenos 99.0 2E-09 4.4E-14 71.0 8.5 94 73-169 1-97 (107)
121 COG0742 N6-adenine-specific me 99.0 4.9E-09 1.1E-13 78.7 11.3 99 68-169 41-147 (187)
122 PRK14121 tRNA (guanine-N(7)-)- 99.0 3.7E-09 8.1E-14 87.7 11.4 98 70-169 122-228 (390)
123 PRK13255 thiopurine S-methyltr 99.0 3.2E-09 6.9E-14 82.1 10.3 109 55-169 23-148 (218)
124 KOG1540 Ubiquinone biosynthesi 99.0 6.3E-09 1.4E-13 81.2 11.7 116 46-169 82-207 (296)
125 TIGR00479 rumA 23S rRNA (uraci 99.0 3.9E-09 8.5E-14 89.1 11.3 106 55-168 277-388 (431)
126 TIGR03438 probable methyltrans 99.0 4.4E-09 9.5E-14 85.0 10.9 97 70-169 63-170 (301)
127 PRK04148 hypothetical protein; 99.0 3.2E-09 6.9E-14 75.8 8.4 92 57-163 3-95 (134)
128 PF01135 PCMT: Protein-L-isoas 99.0 3.4E-09 7.4E-14 81.4 9.1 106 54-169 56-165 (209)
129 TIGR00563 rsmB ribosomal RNA s 99.0 1.2E-08 2.6E-13 86.1 13.2 110 53-169 225-361 (426)
130 PRK11188 rrmJ 23S rRNA methylt 99.0 6.6E-09 1.4E-13 79.8 10.5 90 68-169 49-158 (209)
131 PRK14902 16S rRNA methyltransf 99.0 1.3E-08 2.7E-13 86.4 13.0 97 69-169 249-372 (444)
132 PRK05031 tRNA (uracil-5-)-meth 99.0 5.2E-09 1.1E-13 86.6 9.8 105 55-164 192-311 (362)
133 PF07021 MetW: Methionine bios 98.9 2.4E-09 5.2E-14 80.6 6.9 88 70-165 13-101 (193)
134 TIGR00478 tly hemolysin TlyA f 98.9 2.7E-09 5.9E-14 83.0 7.4 62 50-113 55-118 (228)
135 COG2519 GCD14 tRNA(1-methylade 98.9 2.1E-08 4.6E-13 78.3 12.2 100 62-169 86-188 (256)
136 PTZ00338 dimethyladenosine tra 98.9 8.3E-09 1.8E-13 83.2 10.2 92 58-154 24-115 (294)
137 PLN02476 O-methyltransferase 98.9 6.7E-09 1.4E-13 82.9 9.5 96 68-169 116-221 (278)
138 PRK11088 rrmA 23S rRNA methylt 98.9 1.1E-08 2.3E-13 81.5 10.7 99 55-169 71-174 (272)
139 COG1092 Predicted SAM-dependen 98.9 7.2E-09 1.6E-13 86.2 9.8 99 69-169 216-329 (393)
140 PRK14896 ksgA 16S ribosomal RN 98.9 1.1E-08 2.3E-13 81.0 10.4 87 57-150 16-102 (258)
141 PRK00274 ksgA 16S ribosomal RN 98.9 7.3E-09 1.6E-13 82.6 9.1 89 58-153 30-118 (272)
142 PRK04457 spermidine synthase; 98.9 1.8E-08 3.8E-13 80.0 10.5 95 70-169 66-170 (262)
143 PRK14904 16S rRNA methyltransf 98.9 7E-08 1.5E-12 81.9 14.7 113 49-169 232-370 (445)
144 PRK14901 16S rRNA methyltransf 98.9 5E-08 1.1E-12 82.6 13.4 98 68-169 250-377 (434)
145 TIGR00446 nop2p NOL1/NOP2/sun 98.9 4.8E-08 1E-12 77.6 12.3 97 69-169 70-192 (264)
146 PRK14903 16S rRNA methyltransf 98.9 5.2E-08 1.1E-12 82.4 13.1 99 68-169 235-359 (431)
147 PRK00811 spermidine synthase; 98.9 1.4E-08 3.1E-13 81.3 9.3 96 70-169 76-184 (283)
148 COG4122 Predicted O-methyltran 98.9 2.5E-08 5.4E-13 76.9 10.0 96 69-169 58-159 (219)
149 PF10672 Methyltrans_SAM: S-ad 98.9 1.9E-08 4.1E-13 80.6 9.6 117 46-169 104-231 (286)
150 KOG1541 Predicted protein carb 98.9 1.5E-08 3.2E-13 77.7 8.3 93 70-169 50-153 (270)
151 PTZ00146 fibrillarin; Provisio 98.8 1.9E-07 4.1E-12 74.9 14.8 114 47-169 105-230 (293)
152 KOG4300 Predicted methyltransf 98.8 9.3E-09 2E-13 78.1 6.8 95 73-169 79-175 (252)
153 PRK04338 N(2),N(2)-dimethylgua 98.8 2.4E-08 5.3E-13 83.2 9.9 91 71-169 58-151 (382)
154 TIGR00438 rrmJ cell division p 98.8 6.6E-08 1.4E-12 72.8 11.5 101 57-169 19-139 (188)
155 TIGR02143 trmA_only tRNA (urac 98.8 2.7E-08 5.8E-13 82.1 9.9 105 55-164 183-302 (353)
156 KOG2904 Predicted methyltransf 98.8 5.3E-08 1.1E-12 76.8 10.7 100 54-156 129-239 (328)
157 PF01596 Methyltransf_3: O-met 98.8 1.4E-08 3E-13 77.8 6.8 109 55-169 30-148 (205)
158 TIGR00308 TRM1 tRNA(guanine-26 98.8 6.1E-08 1.3E-12 80.5 10.4 91 71-168 45-139 (374)
159 COG1041 Predicted DNA modifica 98.8 8.7E-08 1.9E-12 78.1 10.9 111 55-169 182-303 (347)
160 KOG3010 Methyltransferase [Gen 98.8 9E-09 2E-13 79.7 5.0 91 73-168 36-128 (261)
161 KOG3420 Predicted RNA methylas 98.8 3.5E-08 7.5E-13 71.1 7.0 95 52-150 26-125 (185)
162 KOG1271 Methyltransferases [Ge 98.7 8E-08 1.7E-12 71.7 8.8 88 53-144 46-141 (227)
163 TIGR00755 ksgA dimethyladenosi 98.7 1.3E-07 2.7E-12 74.6 9.2 56 58-115 17-72 (253)
164 PF05185 PRMT5: PRMT5 arginine 98.7 1.5E-07 3.3E-12 79.9 9.9 96 70-169 186-290 (448)
165 PF02475 Met_10: Met-10+ like- 98.7 5E-08 1.1E-12 74.4 6.4 88 68-158 99-188 (200)
166 PLN02366 spermidine synthase 98.7 2.2E-07 4.8E-12 75.4 10.2 97 70-169 91-199 (308)
167 PF01170 UPF0020: Putative RNA 98.7 1.4E-07 3.1E-12 70.8 8.4 93 56-151 14-117 (179)
168 PLN02589 caffeoyl-CoA O-methyl 98.7 1.1E-07 2.5E-12 74.7 8.1 95 69-169 78-183 (247)
169 PRK13256 thiopurine S-methyltr 98.7 3.7E-07 8E-12 70.9 10.6 118 46-169 20-156 (226)
170 COG2265 TrmA SAM-dependent met 98.7 1.2E-07 2.5E-12 80.2 8.4 106 55-164 278-385 (432)
171 KOG2187 tRNA uracil-5-methyltr 98.6 1.3E-07 2.7E-12 80.2 8.0 67 53-121 366-432 (534)
172 TIGR00417 speE spermidine synt 98.6 2.9E-07 6.2E-12 73.3 9.6 96 70-169 72-179 (270)
173 PF05958 tRNA_U5-meth_tr: tRNA 98.6 1.4E-07 3.1E-12 77.9 6.7 72 51-125 178-250 (352)
174 PF09445 Methyltransf_15: RNA 98.6 1.7E-07 3.8E-12 69.2 6.2 75 73-149 2-79 (163)
175 PF00891 Methyltransf_2: O-met 98.6 4.2E-07 9.1E-12 70.9 8.5 96 61-169 91-190 (241)
176 PF05219 DREV: DREV methyltran 98.5 5E-07 1.1E-11 71.0 8.8 88 70-169 94-181 (265)
177 PRK03612 spermidine synthase; 98.5 6.1E-07 1.3E-11 77.7 9.7 96 70-169 297-408 (521)
178 PRK01581 speE spermidine synth 98.5 4.3E-07 9.3E-12 74.9 8.2 97 70-169 150-261 (374)
179 PF05971 Methyltransf_10: Prot 98.5 1.3E-06 2.9E-11 70.2 10.8 82 71-154 103-192 (299)
180 PF08704 GCD14: tRNA methyltra 98.5 8.3E-07 1.8E-11 69.8 9.3 101 61-169 31-139 (247)
181 KOG2899 Predicted methyltransf 98.5 6.8E-07 1.5E-11 69.5 7.9 100 67-169 55-202 (288)
182 KOG3191 Predicted N6-DNA-methy 98.5 1.3E-06 2.8E-11 65.2 9.0 73 71-148 44-119 (209)
183 COG2520 Predicted methyltransf 98.4 1.2E-06 2.5E-11 71.8 8.8 91 70-163 188-280 (341)
184 KOG2497 Predicted methyltransf 98.4 2E-07 4.4E-12 73.7 3.5 120 45-167 65-191 (262)
185 PF05724 TPMT: Thiopurine S-me 98.4 1.3E-06 2.9E-11 67.5 7.8 120 47-169 15-148 (218)
186 PF03291 Pox_MCEL: mRNA cappin 98.4 1.5E-06 3.2E-11 71.2 8.4 119 49-169 41-179 (331)
187 PF06080 DUF938: Protein of un 98.4 4.2E-06 9.2E-11 63.8 9.3 95 73-169 28-134 (204)
188 PF01861 DUF43: Protein of unk 98.3 1E-05 2.2E-10 63.1 11.5 119 45-168 20-140 (243)
189 COG3963 Phospholipid N-methylt 98.3 7.9E-06 1.7E-10 60.3 9.8 113 50-168 28-148 (194)
190 KOG2940 Predicted methyltransf 98.3 8.2E-07 1.8E-11 68.7 4.8 94 71-169 73-167 (325)
191 COG0030 KsgA Dimethyladenosine 98.3 6.2E-06 1.3E-10 65.1 9.9 89 59-154 19-109 (259)
192 KOG0820 Ribosomal RNA adenine 98.3 1E-05 2.3E-10 63.9 9.8 101 47-153 36-136 (315)
193 PRK11760 putative 23S rRNA C24 98.2 1.3E-05 2.9E-10 65.5 10.2 83 68-161 209-291 (357)
194 KOG2361 Predicted methyltransf 98.2 2.7E-06 5.8E-11 66.1 5.2 95 73-169 74-176 (264)
195 PLN02823 spermine synthase 98.2 1.1E-05 2.3E-10 66.3 8.7 95 70-169 103-213 (336)
196 PRK11783 rlmL 23S rRNA m(2)G24 98.2 2.8E-05 6E-10 69.7 11.8 112 52-166 171-334 (702)
197 PF02527 GidB: rRNA small subu 98.1 2.8E-05 6.2E-10 58.6 9.8 88 73-169 51-141 (184)
198 PF02384 N6_Mtase: N-6 DNA Met 98.1 7.7E-06 1.7E-10 66.1 6.7 93 56-150 32-136 (311)
199 PRK00536 speE spermidine synth 98.1 6.8E-05 1.5E-09 59.5 11.4 90 70-169 72-164 (262)
200 PRK10742 putative methyltransf 98.1 2.9E-05 6.4E-10 60.9 8.6 86 69-157 85-181 (250)
201 COG4076 Predicted RNA methylas 98.1 6.7E-06 1.5E-10 61.9 4.8 71 71-147 33-104 (252)
202 KOG1661 Protein-L-isoaspartate 98.1 3.3E-05 7.1E-10 59.0 8.5 107 54-169 64-186 (237)
203 COG1189 Predicted rRNA methyla 98.0 4.2E-05 9.1E-10 59.5 9.1 109 49-168 58-170 (245)
204 COG0357 GidB Predicted S-adeno 98.0 4.1E-05 8.9E-10 59.0 9.0 89 71-168 68-160 (215)
205 PF08123 DOT1: Histone methyla 98.0 2.3E-05 4.9E-10 60.1 7.5 117 46-169 22-151 (205)
206 TIGR01444 fkbM_fam methyltrans 98.0 2.7E-05 5.9E-10 55.5 7.5 55 73-129 1-58 (143)
207 PF13679 Methyltransf_32: Meth 98.0 3.6E-05 7.8E-10 55.4 7.8 48 69-118 24-77 (141)
208 KOG1975 mRNA cap methyltransfe 98.0 3.7E-05 8E-10 62.3 7.9 111 51-169 104-230 (389)
209 COG0220 Predicted S-adenosylme 98.0 6.2E-05 1.3E-09 58.6 8.8 96 72-169 50-157 (227)
210 PF00398 RrnaAD: Ribosomal RNA 97.9 6.1E-05 1.3E-09 59.7 8.8 103 55-163 15-118 (262)
211 PF01739 CheR: CheR methyltran 97.9 9E-06 2E-10 61.9 3.7 94 71-169 32-168 (196)
212 PRK00050 16S rRNA m(4)C1402 me 97.9 3.1E-05 6.8E-10 62.5 6.8 56 59-116 8-66 (296)
213 COG1352 CheR Methylase of chem 97.9 0.0001 2.3E-09 58.6 9.6 97 71-169 97-234 (268)
214 COG2521 Predicted archaeal met 97.9 1.8E-05 3.9E-10 61.5 4.6 100 68-169 132-238 (287)
215 KOG1501 Arginine N-methyltrans 97.9 3.4E-05 7.4E-10 64.8 6.4 75 73-149 69-145 (636)
216 TIGR02987 met_A_Alw26 type II 97.9 7.5E-05 1.6E-09 64.8 8.5 76 70-150 31-123 (524)
217 PF02390 Methyltransf_4: Putat 97.8 7.3E-05 1.6E-09 56.9 7.3 95 73-169 20-126 (195)
218 PLN02232 ubiquinone biosynthes 97.8 7.5E-05 1.6E-09 54.9 7.1 69 96-169 1-74 (160)
219 PRK11933 yebU rRNA (cytosine-C 97.8 0.00011 2.4E-09 62.9 9.1 86 54-144 99-188 (470)
220 COG0421 SpeE Spermidine syntha 97.8 0.0002 4.4E-09 57.5 9.6 95 72-169 78-183 (282)
221 PF04816 DUF633: Family of unk 97.8 0.00012 2.5E-09 56.2 7.7 70 74-146 1-73 (205)
222 PHA01634 hypothetical protein 97.8 5.8E-05 1.3E-09 53.4 5.3 51 68-120 26-77 (156)
223 PRK10611 chemotaxis methyltran 97.8 5.1E-05 1.1E-09 61.0 5.5 96 72-169 117-255 (287)
224 PF05891 Methyltransf_PK: AdoM 97.7 8.4E-05 1.8E-09 57.2 6.0 123 43-169 23-154 (218)
225 PF09243 Rsm22: Mitochondrial 97.7 0.00044 9.4E-09 55.3 10.2 97 67-168 30-133 (274)
226 KOG1709 Guanidinoacetate methy 97.7 0.00021 4.4E-09 55.1 7.5 98 69-169 100-199 (271)
227 COG0500 SmtA SAM-dependent met 97.6 0.0015 3.2E-08 44.8 10.8 91 74-168 52-147 (257)
228 COG0116 Predicted N6-adenine-s 97.6 0.00081 1.7E-08 55.9 10.7 91 55-148 176-308 (381)
229 PF01564 Spermine_synth: Sperm 97.5 0.00016 3.6E-09 56.9 5.0 96 70-169 76-184 (246)
230 PF07942 N2227: N2227-like pro 97.5 0.0013 2.7E-08 52.5 9.6 96 70-169 56-195 (270)
231 KOG2730 Methylase [General fun 97.4 0.00017 3.6E-09 55.6 3.3 77 70-149 94-175 (263)
232 KOG2915 tRNA(1-methyladenosine 97.3 0.0052 1.1E-07 48.9 11.3 97 63-162 98-199 (314)
233 PRK01544 bifunctional N5-gluta 97.3 0.0015 3.3E-08 56.5 9.1 98 70-169 347-455 (506)
234 KOG2671 Putative RNA methylase 97.2 0.00031 6.8E-09 57.4 3.5 82 68-152 206-296 (421)
235 KOG1663 O-methyltransferase [S 97.2 0.0049 1.1E-07 47.9 9.5 96 68-169 71-176 (237)
236 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.1 0.00061 1.3E-08 54.0 4.0 101 67-169 53-192 (256)
237 COG3129 Predicted SAM-dependen 97.1 0.002 4.2E-08 50.3 6.5 95 56-152 62-166 (292)
238 KOG3987 Uncharacterized conser 97.1 0.00029 6.2E-09 54.0 1.7 86 71-168 113-198 (288)
239 PF12147 Methyltransf_20: Puta 97.0 0.034 7.4E-07 44.8 12.8 98 70-169 135-242 (311)
240 PF01728 FtsJ: FtsJ-like methy 97.0 0.0021 4.6E-08 47.8 5.6 49 54-102 5-58 (181)
241 COG1568 Predicted methyltransf 96.9 0.00083 1.8E-08 53.6 3.4 116 47-167 130-248 (354)
242 cd00315 Cyt_C5_DNA_methylase C 96.9 0.0033 7.2E-08 50.2 6.8 71 73-150 2-73 (275)
243 PF11968 DUF3321: Putative met 96.8 0.0054 1.2E-07 47.2 6.9 104 48-169 25-137 (219)
244 KOG1269 SAM-dependent methyltr 96.8 0.0042 9.1E-08 51.6 6.6 95 69-169 109-208 (364)
245 COG0144 Sun tRNA and rRNA cyto 96.8 0.038 8.3E-07 45.8 12.3 76 67-145 153-235 (355)
246 PF02005 TRM: N2,N2-dimethylgu 96.8 0.0026 5.5E-08 53.2 5.2 76 71-149 50-130 (377)
247 PF03141 Methyltransf_29: Puta 96.8 0.0026 5.6E-08 54.5 5.3 118 46-169 89-212 (506)
248 TIGR03439 methyl_EasF probable 96.7 0.03 6.5E-07 45.8 11.0 97 70-169 76-190 (319)
249 COG2384 Predicted SAM-dependen 96.7 0.016 3.5E-07 44.7 8.7 75 70-147 16-93 (226)
250 PF03059 NAS: Nicotianamine sy 96.5 0.047 1E-06 43.8 10.6 95 72-169 122-223 (276)
251 KOG2078 tRNA modification enzy 96.5 0.0051 1.1E-07 51.7 4.9 74 45-121 225-298 (495)
252 KOG0024 Sorbitol dehydrogenase 96.2 0.024 5.3E-07 46.2 7.6 75 34-112 135-212 (354)
253 KOG4058 Uncharacterized conser 96.2 0.026 5.6E-07 41.2 6.9 47 72-120 74-121 (199)
254 PF01555 N6_N4_Mtase: DNA meth 96.1 0.023 5E-07 43.0 6.5 60 50-112 172-231 (231)
255 TIGR00006 S-adenosyl-methyltra 96.1 0.04 8.7E-07 44.8 8.0 60 57-118 7-68 (305)
256 PF05148 Methyltransf_8: Hypot 96.0 0.037 8E-07 42.6 7.1 98 49-169 52-151 (219)
257 COG1867 TRM1 N2,N2-dimethylgua 95.9 0.017 3.7E-07 47.8 5.4 87 71-163 53-145 (380)
258 COG1565 Uncharacterized conser 95.8 0.039 8.5E-07 45.6 7.0 62 55-118 59-133 (370)
259 KOG3178 Hydroxyindole-O-methyl 95.8 0.05 1.1E-06 44.7 7.5 88 72-169 179-268 (342)
260 PRK11524 putative methyltransf 95.7 0.054 1.2E-06 43.4 7.5 57 56-115 195-251 (284)
261 KOG1227 Putative methyltransfe 95.7 0.015 3.3E-07 47.0 4.2 50 70-121 194-245 (351)
262 COG0293 FtsJ 23S rRNA methylas 95.6 0.034 7.3E-07 42.6 5.6 49 54-102 29-80 (205)
263 PF07757 AdoMet_MTase: Predict 95.6 0.023 5E-07 39.1 4.2 32 71-102 59-90 (112)
264 PRK13699 putative methylase; P 95.6 0.081 1.8E-06 41.1 7.7 59 56-117 150-208 (227)
265 PF01269 Fibrillarin: Fibrilla 95.5 0.5 1.1E-05 36.8 11.8 118 45-169 44-171 (229)
266 PF01189 Nol1_Nop2_Fmu: NOL1/N 95.5 0.054 1.2E-06 43.5 6.7 92 47-145 65-162 (283)
267 PF02636 Methyltransf_28: Puta 94.8 0.21 4.5E-06 39.3 8.1 43 72-116 20-72 (252)
268 PF00145 DNA_methylase: C-5 cy 94.8 0.031 6.7E-07 44.8 3.4 66 73-150 2-72 (335)
269 PF11599 AviRa: RRNA methyltra 94.6 0.14 3E-06 39.7 6.4 43 72-116 53-99 (246)
270 PRK09424 pntA NAD(P) transhydr 94.6 0.54 1.2E-05 41.0 10.8 42 69-112 163-206 (509)
271 PF04445 SAM_MT: Putative SAM- 94.5 0.1 2.2E-06 40.8 5.6 79 73-154 78-165 (234)
272 KOG1331 Predicted methyltransf 94.5 0.028 6.1E-07 45.0 2.3 108 45-169 26-136 (293)
273 COG4262 Predicted spermidine s 94.3 0.12 2.6E-06 43.1 5.7 94 71-168 290-399 (508)
274 KOG3045 Predicted RNA methylas 94.3 0.34 7.4E-06 38.7 8.0 95 50-169 161-257 (325)
275 COG0270 Dcm Site-specific DNA 94.2 0.16 3.4E-06 41.6 6.3 71 72-151 4-79 (328)
276 COG0286 HsdM Type I restrictio 94.0 0.43 9.4E-06 41.3 8.9 78 70-150 186-275 (489)
277 PF13578 Methyltransf_24: Meth 94.0 0.0083 1.8E-07 40.5 -1.4 90 75-169 1-98 (106)
278 PF02086 MethyltransfD12: D12 93.9 0.11 2.3E-06 40.6 4.7 46 57-102 7-52 (260)
279 PF03686 UPF0146: Uncharacteri 93.6 0.27 5.8E-06 34.8 5.7 43 57-102 3-46 (127)
280 TIGR00675 dcm DNA-methyltransf 93.4 0.16 3.6E-06 41.3 5.1 69 74-150 1-70 (315)
281 PF07091 FmrO: Ribosomal RNA m 93.4 0.32 7E-06 38.4 6.5 71 71-146 106-178 (251)
282 PLN02668 indole-3-acetate carb 92.9 0.53 1.1E-05 39.6 7.4 87 71-157 64-180 (386)
283 COG1255 Uncharacterized protei 92.6 0.47 1E-05 33.1 5.6 86 58-165 4-90 (129)
284 KOG2798 Putative trehalase [Ca 92.3 0.45 9.7E-06 38.9 6.0 97 71-169 151-289 (369)
285 KOG2651 rRNA adenine N-6-methy 92.3 0.51 1.1E-05 39.6 6.4 38 72-111 155-193 (476)
286 PF04672 Methyltransf_19: S-ad 91.8 1.1 2.3E-05 35.9 7.5 95 73-169 71-183 (267)
287 COG1064 AdhP Zn-dependent alco 91.7 1.1 2.3E-05 37.1 7.6 45 66-112 162-208 (339)
288 KOG4589 Cell division protein 91.6 0.29 6.2E-06 37.3 3.8 35 68-102 67-104 (232)
289 COG3392 Adenine-specific DNA m 91.2 0.26 5.7E-06 39.3 3.5 47 56-102 8-59 (330)
290 KOG2352 Predicted spermine/spe 91.2 0.8 1.7E-05 39.4 6.6 69 73-146 51-121 (482)
291 COG5459 Predicted rRNA methyla 91.1 0.31 6.8E-06 40.5 4.0 98 66-169 109-218 (484)
292 KOG1122 tRNA and rRNA cytosine 90.9 2.4 5.3E-05 36.0 9.0 83 68-152 239-331 (460)
293 PF05206 TRM13: Methyltransfer 90.8 0.71 1.5E-05 36.7 5.6 42 61-102 9-57 (259)
294 PF03492 Methyltransf_7: SAM d 90.5 1.5 3.3E-05 36.1 7.6 86 71-156 17-124 (334)
295 COG0275 Predicted S-adenosylme 90.3 1.7 3.7E-05 35.4 7.4 66 57-124 10-78 (314)
296 KOG1201 Hydroxysteroid 17-beta 90.3 1.4 3E-05 35.7 6.9 78 67-147 34-122 (300)
297 KOG2912 Predicted DNA methylas 89.9 0.99 2.1E-05 37.1 5.8 76 75-152 107-191 (419)
298 TIGR00561 pntA NAD(P) transhyd 89.0 2.5 5.5E-05 36.9 8.1 93 69-169 162-277 (511)
299 PF01488 Shikimate_DH: Shikima 88.6 1.6 3.5E-05 30.9 5.7 78 67-152 8-88 (135)
300 PF01795 Methyltransf_5: MraW 88.2 0.21 4.6E-06 40.7 0.9 62 61-124 11-74 (310)
301 PRK01438 murD UDP-N-acetylmura 88.1 4.5 9.7E-05 34.6 9.0 75 67-149 12-88 (480)
302 PF04989 CmcI: Cephalosporin h 87.8 5.6 0.00012 30.6 8.4 94 70-169 32-140 (206)
303 COG0863 DNA modification methy 87.5 3.7 8.1E-05 32.5 7.8 61 55-118 208-268 (302)
304 cd00401 AdoHcyase S-adenosyl-L 87.1 1.5 3.3E-05 37.2 5.4 50 46-102 183-235 (413)
305 cd08283 FDH_like_1 Glutathione 86.6 2.6 5.6E-05 35.0 6.6 44 67-112 181-227 (386)
306 PRK12548 shikimate 5-dehydroge 86.3 8.9 0.00019 30.8 9.3 44 58-102 113-160 (289)
307 COG1179 Dinucleotide-utilizing 86.2 4 8.6E-05 32.3 6.9 92 69-164 28-144 (263)
308 COG1063 Tdh Threonine dehydrog 86.2 2.8 6.2E-05 34.5 6.6 42 69-112 167-211 (350)
309 KOG3115 Methyltransferase-like 85.7 0.81 1.8E-05 35.3 2.8 43 72-116 62-106 (249)
310 PRK09590 celB cellobiose phosp 85.5 2.7 5.8E-05 28.7 5.1 55 73-146 3-57 (104)
311 PRK08328 hypothetical protein; 85.5 5.2 0.00011 31.1 7.4 34 69-102 25-61 (231)
312 KOG2017 Molybdopterin synthase 84.4 5.6 0.00012 33.2 7.2 91 69-160 64-178 (427)
313 KOG1253 tRNA methyltransferase 84.3 0.62 1.3E-05 40.2 1.8 91 70-163 109-207 (525)
314 cd01080 NAD_bind_m-THF_DH_Cycl 84.3 6.1 0.00013 29.2 7.0 45 58-102 31-78 (168)
315 PF10237 N6-adenineMlase: Prob 83.9 8.7 0.00019 28.3 7.6 102 54-168 11-115 (162)
316 PRK08862 short chain dehydroge 83.7 8.1 0.00017 29.6 7.7 77 69-147 3-91 (227)
317 TIGR02356 adenyl_thiF thiazole 83.2 6 0.00013 30.0 6.7 33 69-101 19-54 (202)
318 PRK07523 gluconate 5-dehydroge 83.0 10 0.00023 29.0 8.2 79 69-150 8-98 (255)
319 KOG3924 Putative protein methy 82.5 3 6.5E-05 35.2 5.1 100 68-168 190-300 (419)
320 PRK09880 L-idonate 5-dehydroge 81.8 7 0.00015 31.7 7.1 43 67-111 166-211 (343)
321 PRK05867 short chain dehydroge 81.7 11 0.00024 28.8 7.9 80 69-150 7-97 (253)
322 cd00755 YgdL_like Family of ac 81.5 8.5 0.00018 30.0 7.1 34 69-102 9-45 (231)
323 PRK10458 DNA cytosine methylas 81.4 3.8 8.3E-05 35.4 5.5 42 71-114 88-130 (467)
324 cd08281 liver_ADH_like1 Zinc-d 81.2 6.9 0.00015 32.1 6.9 42 67-110 188-232 (371)
325 TIGR03201 dearomat_had 6-hydro 81.1 7.6 0.00016 31.6 7.0 43 67-111 163-207 (349)
326 TIGR03366 HpnZ_proposed putati 80.8 8 0.00017 30.4 6.9 35 68-102 118-155 (280)
327 cd08237 ribitol-5-phosphate_DH 80.7 6.8 0.00015 31.9 6.6 41 69-111 162-206 (341)
328 TIGR02354 thiF_fam2 thiamine b 80.6 12 0.00025 28.5 7.4 33 69-101 19-54 (200)
329 KOG1562 Spermidine synthase [A 80.5 2.2 4.7E-05 34.8 3.5 98 70-169 121-229 (337)
330 TIGR00497 hsdM type I restrict 80.4 12 0.00027 32.4 8.4 78 70-149 217-303 (501)
331 KOG1596 Fibrillarin and relate 80.1 20 0.00044 28.6 8.6 79 33-112 116-203 (317)
332 KOG2539 Mitochondrial/chloropl 80.1 3.5 7.6E-05 35.5 4.7 86 67-154 197-289 (491)
333 PRK12826 3-ketoacyl-(acyl-carr 80.0 14 0.00031 27.8 8.0 80 69-151 4-95 (251)
334 cd05188 MDR Medium chain reduc 79.9 11 0.00025 28.6 7.4 40 69-110 133-174 (271)
335 PRK07411 hypothetical protein; 79.9 7.3 0.00016 32.8 6.7 34 69-102 36-72 (390)
336 PRK06949 short chain dehydroge 79.8 19 0.00042 27.4 8.7 78 69-149 7-96 (258)
337 PRK06124 gluconate 5-dehydroge 79.8 15 0.00033 28.0 8.1 78 69-149 9-98 (256)
338 COG1889 NOP1 Fibrillarin-like 79.5 27 0.00058 27.1 9.3 60 48-109 50-115 (231)
339 PRK09291 short chain dehydroge 79.5 16 0.00034 27.9 8.1 75 71-148 2-82 (257)
340 PRK08213 gluconate 5-dehydroge 79.3 17 0.00037 27.9 8.2 78 69-149 10-99 (259)
341 PF05050 Methyltransf_21: Meth 79.2 8.1 0.00017 27.3 6.0 41 76-118 1-49 (167)
342 TIGR02822 adh_fam_2 zinc-bindi 79.1 7.3 0.00016 31.5 6.3 37 66-102 161-199 (329)
343 PRK15116 sulfur acceptor prote 78.8 15 0.00032 29.4 7.8 35 68-102 27-64 (268)
344 TIGR02818 adh_III_F_hyde S-(hy 78.7 7.5 0.00016 32.0 6.3 36 67-102 182-220 (368)
345 PRK12475 thiamine/molybdopteri 78.5 8.6 0.00019 31.7 6.5 34 69-102 22-58 (338)
346 PRK08223 hypothetical protein; 78.1 19 0.00041 29.2 8.2 34 69-102 25-61 (287)
347 PLN02740 Alcohol dehydrogenase 77.7 7.6 0.00016 32.1 6.1 43 66-110 194-239 (381)
348 PRK05876 short chain dehydroge 77.5 16 0.00035 28.6 7.7 79 69-149 4-93 (275)
349 PRK07877 hypothetical protein; 77.3 8.6 0.00019 35.1 6.7 34 69-102 105-141 (722)
350 KOG1098 Putative SAM-dependent 77.3 4.7 0.0001 36.1 4.8 49 54-102 28-79 (780)
351 cd08239 THR_DH_like L-threonin 77.1 11 0.00024 30.2 6.8 35 66-102 159-198 (339)
352 PRK07035 short chain dehydroge 76.8 20 0.00043 27.3 7.9 78 69-148 6-94 (252)
353 COG0686 Ald Alanine dehydrogen 76.7 3.2 6.9E-05 34.1 3.4 89 72-169 169-261 (371)
354 KOG0821 Predicted ribosomal RN 76.6 7.7 0.00017 30.5 5.3 52 59-112 39-91 (326)
355 TIGR02355 moeB molybdopterin s 76.5 14 0.0003 28.9 7.0 34 69-102 22-58 (240)
356 PRK00421 murC UDP-N-acetylmura 76.5 12 0.00026 31.9 7.1 72 67-150 3-77 (461)
357 PRK05597 molybdopterin biosynt 76.1 12 0.00026 31.0 6.8 34 69-102 26-62 (355)
358 PRK06139 short chain dehydroge 76.1 20 0.00044 29.2 8.1 79 69-149 5-94 (330)
359 PRK08644 thiamine biosynthesis 76.1 18 0.0004 27.6 7.4 33 69-101 26-61 (212)
360 PF11899 DUF3419: Protein of u 76.0 13 0.00027 31.4 6.9 50 50-103 19-68 (380)
361 PRK06172 short chain dehydroge 76.0 23 0.00049 27.0 8.0 79 69-149 5-94 (253)
362 TIGR00853 pts-lac PTS system, 75.6 10 0.00023 25.2 5.2 55 72-147 4-58 (95)
363 PF02737 3HCDH_N: 3-hydroxyacy 75.5 9.3 0.0002 28.4 5.5 41 74-116 2-44 (180)
364 PRK08339 short chain dehydroge 75.4 27 0.00058 27.1 8.4 78 69-148 6-94 (263)
365 PRK06720 hypothetical protein; 75.4 27 0.00058 25.6 7.9 80 69-150 14-104 (169)
366 PRK07814 short chain dehydroge 75.0 27 0.00058 27.0 8.3 76 69-147 8-95 (263)
367 PRK07688 thiamine/molybdopteri 74.7 11 0.00023 31.2 6.1 33 69-101 22-57 (339)
368 PF03721 UDPG_MGDP_dh_N: UDP-g 74.7 6.9 0.00015 29.3 4.6 33 76-110 5-39 (185)
369 PRK05854 short chain dehydroge 74.4 29 0.00062 27.8 8.5 80 68-149 11-103 (313)
370 COG0499 SAM1 S-adenosylhomocys 74.3 7.8 0.00017 32.5 5.1 51 45-102 189-242 (420)
371 PRK07792 fabG 3-ketoacyl-(acyl 74.2 23 0.0005 28.3 7.9 81 68-149 9-99 (306)
372 PRK09242 tropinone reductase; 73.4 28 0.0006 26.7 8.0 48 68-117 6-56 (257)
373 COG1748 LYS9 Saccharopine dehy 73.1 9.7 0.00021 32.2 5.5 73 72-151 2-80 (389)
374 PRK05866 short chain dehydroge 73.0 27 0.00059 27.7 8.0 78 69-149 38-127 (293)
375 PRK07063 short chain dehydroge 72.7 30 0.00066 26.5 8.0 78 69-149 5-96 (260)
376 PRK07890 short chain dehydroge 72.5 34 0.00073 26.0 8.2 79 69-149 3-92 (258)
377 cd00757 ThiF_MoeB_HesA_family 72.5 12 0.00027 28.7 5.7 34 69-102 19-55 (228)
378 PRK07576 short chain dehydroge 72.0 33 0.00072 26.5 8.2 76 69-147 7-94 (264)
379 cd08254 hydroxyacyl_CoA_DH 6-h 71.9 20 0.00043 28.4 7.1 42 68-111 163-206 (338)
380 PRK08762 molybdopterin biosynt 71.9 15 0.00031 30.7 6.4 33 69-101 133-168 (376)
381 PRK14192 bifunctional 5,10-met 71.7 27 0.00059 28.1 7.6 50 52-101 139-192 (283)
382 PLN02780 ketoreductase/ oxidor 71.5 25 0.00055 28.4 7.6 45 70-116 52-99 (320)
383 PRK05690 molybdopterin biosynt 71.3 19 0.00041 28.2 6.6 34 69-102 30-66 (245)
384 PRK08085 gluconate 5-dehydroge 71.2 31 0.00068 26.3 7.8 78 69-149 7-96 (254)
385 COG2933 Predicted SAM-dependen 71.2 23 0.0005 28.6 6.9 83 69-162 210-292 (358)
386 COG1062 AdhC Zn-dependent alco 70.8 15 0.00033 30.6 6.0 44 67-112 182-228 (366)
387 PRK07097 gluconate 5-dehydroge 70.8 34 0.00075 26.3 8.0 80 69-150 8-98 (265)
388 PRK07478 short chain dehydroge 70.6 36 0.00078 26.0 8.0 79 69-149 4-93 (254)
389 cd01487 E1_ThiF_like E1_ThiF_l 70.6 36 0.00079 25.1 7.7 30 73-102 1-33 (174)
390 PRK07985 oxidoreductase; Provi 70.2 36 0.00078 27.0 8.1 81 68-148 46-137 (294)
391 PLN02586 probable cinnamyl alc 70.1 14 0.0003 30.3 5.8 34 69-102 182-217 (360)
392 cd01485 E1-1_like Ubiquitin ac 70.0 25 0.00054 26.5 6.8 32 70-101 18-52 (198)
393 PRK12481 2-deoxy-D-gluconate 3 69.9 34 0.00073 26.3 7.7 78 69-150 6-94 (251)
394 PRK06935 2-deoxy-D-gluconate 3 69.9 38 0.00083 25.9 8.0 86 59-148 4-100 (258)
395 PLN03209 translocon at the inn 69.8 24 0.00053 31.4 7.5 36 66-102 75-114 (576)
396 PRK07666 fabG 3-ketoacyl-(acyl 69.5 39 0.00084 25.4 7.9 43 70-115 6-52 (239)
397 TIGR03206 benzo_BadH 2-hydroxy 69.4 42 0.00091 25.3 8.1 76 70-148 2-89 (250)
398 COG1004 Ugd Predicted UDP-gluc 69.1 7.2 0.00016 33.0 3.9 23 80-102 7-33 (414)
399 cd08230 glucose_DH Glucose deh 69.1 30 0.00065 28.1 7.6 33 69-101 171-205 (355)
400 PRK07326 short chain dehydroge 69.1 37 0.00079 25.5 7.7 77 70-150 5-93 (237)
401 PRK07102 short chain dehydroge 69.0 33 0.00072 25.9 7.5 30 72-102 2-35 (243)
402 PRK01747 mnmC bifunctional tRN 68.8 30 0.00064 31.1 8.0 97 72-169 59-199 (662)
403 cd08300 alcohol_DH_class_III c 68.6 20 0.00044 29.3 6.5 34 67-102 183-221 (368)
404 PRK06701 short chain dehydroge 68.6 38 0.00081 26.8 7.9 79 68-147 43-132 (290)
405 PRK06194 hypothetical protein; 68.6 36 0.00077 26.5 7.7 79 69-150 4-94 (287)
406 KOG2918 Carboxymethyl transfer 68.5 7 0.00015 32.0 3.6 55 44-101 64-120 (335)
407 PRK07109 short chain dehydroge 68.2 45 0.00098 27.1 8.4 79 69-149 6-95 (334)
408 PRK07677 short chain dehydroge 68.1 44 0.00096 25.4 8.0 75 71-147 1-86 (252)
409 PRK14106 murD UDP-N-acetylmura 67.8 33 0.00072 29.0 7.8 72 69-149 3-78 (450)
410 cd01492 Aos1_SUMO Ubiquitin ac 67.5 28 0.00061 26.2 6.6 78 69-146 19-117 (197)
411 PF00670 AdoHcyase_NAD: S-aden 67.4 17 0.00036 26.9 5.1 36 67-102 19-56 (162)
412 PRK08703 short chain dehydroge 67.4 31 0.00067 26.0 7.0 44 69-115 4-51 (239)
413 PRK15001 SAM-dependent 23S rib 67.4 34 0.00073 28.8 7.6 108 47-169 23-135 (378)
414 PRK12429 3-hydroxybutyrate deh 67.4 51 0.0011 24.9 8.3 77 70-149 3-91 (258)
415 COG0373 HemA Glutamyl-tRNA red 67.3 24 0.00053 30.1 6.7 57 54-118 164-223 (414)
416 PRK07454 short chain dehydroge 67.2 45 0.00097 25.1 7.8 78 70-150 5-94 (241)
417 cd01078 NAD_bind_H4MPT_DH NADP 67.1 39 0.00085 25.0 7.3 34 68-101 25-61 (194)
418 cd08301 alcohol_DH_plants Plan 67.1 23 0.0005 29.0 6.5 34 67-102 184-222 (369)
419 KOG0022 Alcohol dehydrogenase, 67.0 17 0.00037 30.1 5.5 45 66-112 188-235 (375)
420 PF03141 Methyltransf_29: Puta 66.9 12 0.00026 32.6 4.9 88 72-169 367-460 (506)
421 PRK06113 7-alpha-hydroxysteroi 66.8 47 0.001 25.3 8.0 79 69-149 9-98 (255)
422 cd01075 NAD_bind_Leu_Phe_Val_D 66.3 54 0.0012 24.7 8.4 42 66-111 23-68 (200)
423 cd01491 Ube1_repeat1 Ubiquitin 66.3 46 0.00099 26.9 7.9 77 70-148 18-114 (286)
424 PRK07774 short chain dehydroge 66.3 55 0.0012 24.7 8.2 79 69-150 4-94 (250)
425 PRK06125 short chain dehydroge 66.2 55 0.0012 25.0 8.2 78 69-149 5-91 (259)
426 TIGR00936 ahcY adenosylhomocys 66.2 14 0.0003 31.4 5.1 35 68-102 192-228 (406)
427 PRK12935 acetoacetyl-CoA reduc 66.1 54 0.0012 24.7 8.1 80 69-150 4-95 (247)
428 PRK07889 enoyl-(acyl carrier p 66.0 23 0.00051 27.3 6.1 42 69-110 5-51 (256)
429 PF00107 ADH_zinc_N: Zinc-bind 65.8 7.6 0.00016 26.5 3.0 74 80-168 1-81 (130)
430 PLN02494 adenosylhomocysteinas 65.6 11 0.00025 32.6 4.5 51 46-102 235-287 (477)
431 PRK08589 short chain dehydroge 65.6 57 0.0012 25.3 8.3 77 69-149 4-92 (272)
432 TIGR01832 kduD 2-deoxy-D-gluco 65.5 42 0.00092 25.4 7.4 77 69-150 3-91 (248)
433 PRK08217 fabG 3-ketoacyl-(acyl 65.5 53 0.0011 24.7 8.0 77 69-148 3-91 (253)
434 PRK01710 murD UDP-N-acetylmura 65.5 29 0.00062 29.7 7.0 75 69-150 12-88 (458)
435 PF07015 VirC1: VirC1 protein; 65.4 9.8 0.00021 29.8 3.8 22 88-109 26-47 (231)
436 TIGR01963 PHB_DH 3-hydroxybuty 65.2 46 0.00099 25.2 7.6 75 72-149 2-88 (255)
437 cd01483 E1_enzyme_family Super 65.1 40 0.00086 23.6 6.7 29 73-101 1-32 (143)
438 PRK07791 short chain dehydroge 65.0 45 0.00097 26.3 7.7 82 69-150 4-103 (286)
439 PF04072 LCM: Leucine carboxyl 64.8 22 0.00048 26.3 5.5 90 72-162 80-182 (183)
440 PRK12823 benD 1,6-dihydroxycyc 64.8 57 0.0012 24.9 8.1 76 69-147 6-92 (260)
441 COG4301 Uncharacterized conser 64.7 53 0.0011 26.4 7.6 144 17-169 29-186 (321)
442 cd05564 PTS_IIB_chitobiose_lic 64.6 14 0.00031 24.5 4.0 40 106-147 15-54 (96)
443 PRK12549 shikimate 5-dehydroge 64.6 72 0.0016 25.5 10.3 35 68-102 124-161 (284)
444 PRK06153 hypothetical protein; 64.5 9.1 0.0002 32.3 3.6 33 69-101 174-209 (393)
445 PF00070 Pyr_redox: Pyridine n 64.4 32 0.0007 21.4 5.7 41 80-120 6-56 (80)
446 PRK08303 short chain dehydroge 64.3 44 0.00095 26.8 7.6 34 68-101 5-41 (305)
447 PRK06718 precorrin-2 dehydroge 64.3 19 0.00041 27.3 5.1 33 69-101 8-42 (202)
448 PRK08277 D-mannonate oxidoredu 64.2 38 0.00082 26.3 7.1 77 69-147 8-95 (278)
449 PRK12769 putative oxidoreducta 64.1 19 0.00041 32.3 5.9 33 70-102 326-360 (654)
450 cd08277 liver_alcohol_DH_like 63.9 26 0.00055 28.7 6.2 36 67-102 181-219 (365)
451 PRK07062 short chain dehydroge 63.8 63 0.0014 24.8 8.2 79 69-149 6-97 (265)
452 cd01484 E1-2_like Ubiquitin ac 63.5 60 0.0013 25.3 7.9 30 73-102 1-33 (234)
453 cd08232 idonate-5-DH L-idonate 63.0 38 0.00082 27.0 7.0 40 69-110 164-206 (339)
454 PRK10310 PTS system galactitol 62.9 26 0.00057 23.1 5.0 9 77-85 7-15 (94)
455 PRK06114 short chain dehydroge 62.7 55 0.0012 25.0 7.7 80 69-150 6-97 (254)
456 cd01489 Uba2_SUMO Ubiquitin ac 62.6 65 0.0014 26.4 8.2 30 73-102 1-33 (312)
457 PRK06128 oxidoreductase; Provi 62.5 59 0.0013 25.7 8.0 80 69-149 53-144 (300)
458 cd08255 2-desacetyl-2-hydroxye 62.5 41 0.00088 25.9 6.9 37 66-102 93-132 (277)
459 PRK07878 molybdopterin biosynt 61.7 29 0.00063 29.2 6.2 33 70-102 41-76 (392)
460 PRK08993 2-deoxy-D-gluconate 3 61.4 48 0.001 25.3 7.1 33 69-102 8-44 (253)
461 TIGR03451 mycoS_dep_FDH mycoth 61.4 30 0.00065 28.2 6.2 42 67-110 173-217 (358)
462 PF07279 DUF1442: Protein of u 61.3 75 0.0016 24.7 8.1 61 58-120 29-95 (218)
463 PRK09072 short chain dehydroge 61.3 62 0.0014 24.8 7.8 77 70-149 4-90 (263)
464 PRK08945 putative oxoacyl-(acy 61.3 44 0.00096 25.3 6.8 45 68-115 9-57 (247)
465 PRK05650 short chain dehydroge 60.8 61 0.0013 25.0 7.6 74 73-149 2-87 (270)
466 PRK05600 thiamine biosynthesis 60.4 40 0.00087 28.2 6.8 33 69-101 39-74 (370)
467 KOG0725 Reductases with broad 60.3 49 0.0011 26.3 7.1 51 67-119 4-57 (270)
468 PLN02178 cinnamyl-alcohol dehy 60.1 32 0.00069 28.5 6.2 33 70-102 178-212 (375)
469 PLN03154 putative allyl alcoho 60.0 47 0.001 27.1 7.1 36 67-102 155-193 (348)
470 PF06962 rRNA_methylase: Putat 60.0 23 0.0005 25.5 4.6 50 94-145 1-52 (140)
471 PRK08628 short chain dehydroge 59.9 63 0.0014 24.6 7.5 77 69-149 5-93 (258)
472 PF12242 Eno-Rase_NADH_b: NAD( 59.8 34 0.00074 22.1 4.8 43 59-102 27-74 (78)
473 PRK14852 hypothetical protein; 59.7 49 0.0011 31.5 7.7 34 69-102 330-366 (989)
474 PRK14851 hypothetical protein; 59.6 44 0.00094 30.5 7.3 34 69-102 41-77 (679)
475 COG0541 Ffh Signal recognition 58.8 38 0.00083 29.1 6.4 91 73-168 102-213 (451)
476 PRK12771 putative glutamate sy 58.6 33 0.00071 30.2 6.3 34 68-101 134-169 (564)
477 PRK08643 acetoin reductase; Va 58.6 70 0.0015 24.3 7.6 76 71-149 2-89 (256)
478 PRK06522 2-dehydropantoate 2-r 58.4 56 0.0012 25.7 7.2 86 73-168 2-92 (304)
479 PLN02827 Alcohol dehydrogenase 58.3 45 0.00097 27.6 6.8 34 67-102 190-228 (378)
480 PRK06138 short chain dehydroge 58.1 78 0.0017 23.8 7.7 77 69-149 3-91 (252)
481 PRK08416 7-alpha-hydroxysteroi 57.9 84 0.0018 24.1 8.0 79 68-147 5-95 (260)
482 PRK08306 dipicolinate synthase 57.8 60 0.0013 26.2 7.2 36 67-102 148-185 (296)
483 cd08245 CAD Cinnamyl alcohol d 57.7 52 0.0011 26.1 6.9 42 67-110 159-202 (330)
484 PRK07533 enoyl-(acyl carrier p 57.7 50 0.0011 25.5 6.6 35 68-102 7-46 (258)
485 PRK12829 short chain dehydroge 57.3 77 0.0017 24.1 7.6 34 68-102 8-45 (264)
486 PRK12743 oxidoreductase; Provi 56.9 86 0.0019 23.9 8.2 77 71-149 2-90 (256)
487 PRK06035 3-hydroxyacyl-CoA deh 56.8 32 0.0007 27.3 5.5 41 72-114 4-46 (291)
488 PRK03369 murD UDP-N-acetylmura 56.6 27 0.00059 30.2 5.4 70 69-150 10-81 (488)
489 PRK07453 protochlorophyllide o 56.5 71 0.0015 25.5 7.6 77 70-149 5-93 (322)
490 TIGR01202 bchC 2-desacetyl-2-h 56.2 22 0.00048 28.4 4.5 40 70-111 144-186 (308)
491 TIGR01381 E1_like_apg7 E1-like 56.1 14 0.00031 33.3 3.6 34 69-102 336-372 (664)
492 PRK07231 fabG 3-ketoacyl-(acyl 55.8 78 0.0017 23.8 7.4 77 69-149 3-91 (251)
493 cd08296 CAD_like Cinnamyl alco 55.7 53 0.0011 26.3 6.7 34 67-102 160-197 (333)
494 PRK11730 fadB multifunctional 55.7 31 0.00068 31.4 5.8 92 72-168 314-420 (715)
495 TIGR01318 gltD_gamma_fam gluta 55.1 39 0.00085 29.0 6.1 33 70-102 140-174 (467)
496 PRK05872 short chain dehydroge 54.9 83 0.0018 24.8 7.6 80 68-150 6-96 (296)
497 PRK05653 fabG 3-ketoacyl-(acyl 54.8 86 0.0019 23.3 8.2 32 70-102 4-39 (246)
498 PRK05786 fabG 3-ketoacyl-(acyl 54.4 89 0.0019 23.3 7.6 33 69-102 3-39 (238)
499 COG0771 MurD UDP-N-acetylmuram 54.3 52 0.0011 28.4 6.6 72 70-149 6-79 (448)
500 cd01488 Uba3_RUB Ubiquitin act 53.9 88 0.0019 25.3 7.5 30 73-102 1-33 (291)
No 1
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.96 E-value=4.1e-29 Score=186.67 Aligned_cols=133 Identities=35% Similarity=0.479 Sum_probs=86.8
Q ss_pred ceEEEEeccccCCcceeecchHHHHHHHHHhc------cCCCCCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHH
Q 030935 34 SFSIAIIENMKEEYGLFVWPCSVILAEYVWQQ------RYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIE 105 (169)
Q Consensus 34 ~~~i~i~~~~~~~~g~~~W~~~~~La~~l~~~------~~~~~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~ 105 (169)
..+++|.|....++|.++||++.+|++|+.++ ...+++++|||||||+|++|+.+++. +++|++||+++
T Consensus 3 ~~~l~i~e~~~~~~G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~--- 79 (173)
T PF10294_consen 3 NKTLQIEEDWGDGTGGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE--- 79 (173)
T ss_dssp --------------------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S----
T ss_pred ccccccccccccCCcEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch---
Confidence 34577888888899999999999999999984 56778999999999999999999998 45999999983
Q ss_pred HHHHHHHHHHHhC----CcceEEEEEcCCCC-c-CCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 106 VLKNMRRVCEMNK----LNCRVMGLTWGFLD-A-SIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 106 ~l~~~~~n~~~n~----~~~~~~~l~~~~~~-~-~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.+++++.|++.|+ .++.+..++|++.. . ...+.+||+|+++||+|+...+++|++++.++|+|.
T Consensus 80 ~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~ 149 (173)
T PF10294_consen 80 VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPN 149 (173)
T ss_dssp HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-
T ss_pred hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCC
Confidence 9999999999987 45778899999743 1 122358999999999999999999999999999874
No 2
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=99.75 E-value=1.8e-18 Score=129.16 Aligned_cols=113 Identities=20% Similarity=0.258 Sum_probs=98.9
Q ss_pred CCcceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceE
Q 030935 45 EEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRV 123 (169)
Q Consensus 45 ~~~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~ 123 (169)
+.++++.|-+++.||+|+..+++..+|++|||+|+|+|++++.+++.|+ .|+++|+. |..+.+++.|++.|+..+.+
T Consensus 54 Ppfwa~~WagG~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~--P~~~~ai~lNa~angv~i~~ 131 (218)
T COG3897 54 PPFWAFAWAGGQVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADID--PWLEQAIRLNAAANGVSILF 131 (218)
T ss_pred chHHHHHHhhhHHHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCC--hHHHHHhhcchhhccceeEE
Confidence 4589999999999999999999999999999999999999999999998 79999999 56999999999999987765
Q ss_pred EEEEcCCCCcCCCCCCCcEEEEcCcCCCCCChHHHHHHHHH
Q 030935 124 MGLTWGFLDASIFDLNPNIILGADVFYDASGKICAFEILIC 164 (169)
Q Consensus 124 ~~l~~~~~~~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~ 164 (169)
...+... .+..||+|+++|++|+.+....+++++.+
T Consensus 132 ~~~d~~g-----~~~~~Dl~LagDlfy~~~~a~~l~~~~~~ 167 (218)
T COG3897 132 THADLIG-----SPPAFDLLLAGDLFYNHTEADRLIPWKDR 167 (218)
T ss_pred eeccccC-----CCcceeEEEeeceecCchHHHHHHHHHHH
Confidence 5443321 34589999999999999999988884443
No 3
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=8.2e-17 Score=128.52 Aligned_cols=145 Identities=17% Similarity=0.146 Sum_probs=106.0
Q ss_pred CCCcceEEEEEeccCCC-----C-CceEEEEeccccCCcceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHH
Q 030935 15 DKHMTTVSQHYFVDESD-----K-PSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVA 88 (169)
Q Consensus 15 ~~~~~~~~~~~~~~~~~-----~-~~~~i~i~~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~ 88 (169)
-..|..+.+.++..+.- . ..+.|++.+.+..++|+ .|.+..-.+++.+.. .++++|||+|||||++++++
T Consensus 105 ~~~P~rig~~f~I~Psw~~~~~~~~~~~i~lDPGlAFGTG~--HpTT~lcL~~Le~~~--~~g~~vlDvGcGSGILaIAa 180 (300)
T COG2264 105 YFHPVRIGERFVIVPSWREYPEPSDELNIELDPGLAFGTGT--HPTTSLCLEALEKLL--KKGKTVLDVGCGSGILAIAA 180 (300)
T ss_pred cCCcEEeeeeEEECCCCccCCCCCCceEEEEccccccCCCC--ChhHHHHHHHHHHhh--cCCCEEEEecCChhHHHHHH
Confidence 34577777766644321 1 46778888888888887 467777677776653 38899999999999999999
Q ss_pred HHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhcc
Q 030935 89 AKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFYDASGKICAFEILICSLF 167 (169)
Q Consensus 89 a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~ 167 (169)
+++|+ +|+++|+++ -+++.+++|+.+|++.... ...+..........+||+|+|+ ++ ...+..+..-+...|+
T Consensus 181 ~kLGA~~v~g~DiDp--~AV~aa~eNa~~N~v~~~~-~~~~~~~~~~~~~~~~DvIVAN-IL--A~vl~~La~~~~~~lk 254 (300)
T COG2264 181 AKLGAKKVVGVDIDP--QAVEAARENARLNGVELLV-QAKGFLLLEVPENGPFDVIVAN-IL--AEVLVELAPDIKRLLK 254 (300)
T ss_pred HHcCCceEEEecCCH--HHHHHHHHHHHHcCCchhh-hcccccchhhcccCcccEEEeh-hh--HHHHHHHHHHHHHHcC
Confidence 99999 699999995 5999999999999987421 2333333333333599999985 32 3345577788888888
Q ss_pred CC
Q 030935 168 PI 169 (169)
Q Consensus 168 p~ 169 (169)
|+
T Consensus 255 pg 256 (300)
T COG2264 255 PG 256 (300)
T ss_pred CC
Confidence 75
No 4
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.71 E-value=1.4e-16 Score=118.46 Aligned_cols=109 Identities=23% Similarity=0.216 Sum_probs=87.3
Q ss_pred chHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC--eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCC
Q 030935 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGF 130 (169)
Q Consensus 53 ~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~ 130 (169)
+++..|++++... ++++|||+|||+|.+|+.+++.+. +|+++|++ +.+++.+++|++.|++.. ..+.+.+
T Consensus 18 ~~t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~--~~a~~~a~~n~~~n~~~~--v~~~~~d 89 (170)
T PF05175_consen 18 AGTRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDIN--PDALELAKRNAERNGLEN--VEVVQSD 89 (170)
T ss_dssp HHHHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESB--HHHHHHHHHHHHHTTCTT--EEEEESS
T ss_pred HHHHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCC--HHHHHHHHHHHHhcCccc--ccccccc
Confidence 4788888888766 567999999999999999999876 59999999 569999999999999884 2345666
Q ss_pred CCcCCCCCCCcEEEEcCcCCCCCC-----hHHHHHHHHHhccCC
Q 030935 131 LDASIFDLNPNIILGADVFYDASG-----KICAFEILICSLFPI 169 (169)
Q Consensus 131 ~~~~~~~~~fDlIi~sd~iy~~~~-----~~~l~~~l~~~L~p~ 169 (169)
......+.+||+|+++.+++.-.. ...+++...+.|+|+
T Consensus 90 ~~~~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~ 133 (170)
T PF05175_consen 90 LFEALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPG 133 (170)
T ss_dssp TTTTCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEE
T ss_pred ccccccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCC
Confidence 655555679999999999776654 678888888999874
No 5
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=2.2e-18 Score=125.16 Aligned_cols=121 Identities=25% Similarity=0.379 Sum_probs=98.2
Q ss_pred CcceeecchHHHHHHHHHhccCCCCCCeEEEECCC-CCHHHHHHHHhCC--eEEEEcCCCcHHHHHHHHHHHHHhCCc--
Q 030935 46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAG-TSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN-- 120 (169)
Q Consensus 46 ~~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcG-tGl~~l~~a~~ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~-- 120 (169)
++..++||+...|+.++++++..++|++|||||.| ||+.|+++|.... .|..||-++ +.+++.++-...|..+
T Consensus 5 tgnvciwpseeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne--~svrnv~ki~~~n~~s~~ 82 (201)
T KOG3201|consen 5 TGNVCIWPSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNE--ESVRNVEKIRNSNMASSL 82 (201)
T ss_pred CCcEEecccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCH--HHHHHHHHHHhccccccc
Confidence 34579999999999999999999999999999999 9999999998754 799999994 5899998877777332
Q ss_pred ceEEEEEcCCCC--cCCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccC
Q 030935 121 CRVMGLTWGFLD--ASIFDLNPNIILGADVFYDASGKICAFEILICSLFP 168 (169)
Q Consensus 121 ~~~~~l~~~~~~--~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p 168 (169)
.++..+.|.... .......||+|+|+||+|..+..++|+++|+..|+|
T Consensus 83 tsc~vlrw~~~~aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p 132 (201)
T KOG3201|consen 83 TSCCVLRWLIWGAQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRP 132 (201)
T ss_pred ceehhhHHHHhhhHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCc
Confidence 122234443221 122335999999999999999999999999999998
No 6
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.71 E-value=2.2e-17 Score=127.20 Aligned_cols=97 Identities=15% Similarity=0.121 Sum_probs=82.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCc
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~ 148 (169)
++|++|||+|||.|+++..+|+.|++|+++|+++ ++++.++.....+++.+......-.+... ...+||+|+|.++
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se--~~I~~Ak~ha~e~gv~i~y~~~~~edl~~--~~~~FDvV~cmEV 133 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASE--KPIEVAKLHALESGVNIDYRQATVEDLAS--AGGQFDVVTCMEV 133 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCCeeEEecCCh--HHHHHHHHhhhhccccccchhhhHHHHHh--cCCCccEEEEhhH
Confidence 6899999999999999999999999999999995 59999999999998875433222222211 1269999999999
Q ss_pred CCCCCChHHHHHHHHHhccCC
Q 030935 149 FYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 149 iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+.|.++.+.+++.+.+.+||+
T Consensus 134 lEHv~dp~~~~~~c~~lvkP~ 154 (243)
T COG2227 134 LEHVPDPESFLRACAKLVKPG 154 (243)
T ss_pred HHccCCHHHHHHHHHHHcCCC
Confidence 999999999999999999996
No 7
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=99.68 E-value=4.6e-16 Score=121.30 Aligned_cols=129 Identities=29% Similarity=0.441 Sum_probs=99.3
Q ss_pred EEEeccccCCcceeecchHHHHHHHHHhccC------CCC-----CCeEEEECCCCCHHHHHHHH-hCCeEEEEcCCCcH
Q 030935 37 IAIIENMKEEYGLFVWPCSVILAEYVWQQRY------RFS-----GANVVELGAGTSLPGLVAAK-VGSNVTLTDDSNRI 104 (169)
Q Consensus 37 i~i~~~~~~~~g~~~W~~~~~La~~l~~~~~------~~~-----~~~vLElGcGtGl~~l~~a~-~ga~V~~~D~~~~~ 104 (169)
+.+.......+.+.+|+++-.+++++..... ... .++|||||+|||++|+.+|+ .++.|+.+|..+
T Consensus 42 ~~~~~~~~~~~~~~~w~~~~~la~~~~~~~~~~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~-- 119 (248)
T KOG2793|consen 42 TVIESGLEQGISAYLWSCATTLAQPLWERRRDSELTATLIGFKTKYINVLELGSGTGLVGILAALLLGAEVVLTDLPK-- 119 (248)
T ss_pred eecccccccceeeEEeehhhccchhhhhhhcCchhhhccccccccceeEEEecCCccHHHHHHHHHhcceeccCCchh--
Confidence 4444445667899999999999999987543 222 34699999999999999998 567999999975
Q ss_pred HHHHHHHHHHHHh-----C--CcceEEEEEcCCCCcCC-CCCC-CcEEEEcCcCCCCCChHHHHHHHHHhccC
Q 030935 105 EVLKNMRRVCEMN-----K--LNCRVMGLTWGFLDASI-FDLN-PNIILGADVFYDASGKICAFEILICSLFP 168 (169)
Q Consensus 105 ~~l~~~~~n~~~n-----~--~~~~~~~l~~~~~~~~~-~~~~-fDlIi~sd~iy~~~~~~~l~~~l~~~L~p 168 (169)
.+.+.+.|...| + .++.+..+.|++..... .... ||+|+++||+|.+..++.+..+++..|..
T Consensus 120 -~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~ 191 (248)
T KOG2793|consen 120 -VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLILASDVVYEEESFEGLVKTLAFLLAK 191 (248)
T ss_pred -hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEEEEeeeeecCCcchhHHHHHHHHHhc
Confidence 555555554333 2 26778899999864422 2224 89999999999999999999999988754
No 8
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.66 E-value=1e-15 Score=122.80 Aligned_cols=123 Identities=18% Similarity=0.232 Sum_probs=90.0
Q ss_pred CceEEEEeccccCCcceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHH
Q 030935 33 PSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 33 ~~~~i~i~~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~ 111 (169)
....|.|.+.+..+||. .|.+....++|.+. ..++++|||+|||||+++++++++|+ +|+++|+++ .+++.++
T Consensus 128 ~~~~I~idPg~AFGTG~--H~TT~lcl~~l~~~--~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp--~Av~~a~ 201 (295)
T PF06325_consen 128 DEIVIEIDPGMAFGTGH--HPTTRLCLELLEKY--VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDP--LAVEAAR 201 (295)
T ss_dssp TSEEEEESTTSSS-SSH--CHHHHHHHHHHHHH--SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSC--HHHHHHH
T ss_pred CcEEEEECCCCcccCCC--CHHHHHHHHHHHHh--ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCH--HHHHHHH
Confidence 46678888888888887 46888888888876 34788999999999999999999999 799999996 4999999
Q ss_pred HHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccC
Q 030935 112 RVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFYDASGKICAFEILICSLFP 168 (169)
Q Consensus 112 ~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p 168 (169)
+|++.|++..++... . .......+||+|+|+ ++. ..+..++..+.+.|+|
T Consensus 202 ~N~~~N~~~~~~~v~---~-~~~~~~~~~dlvvAN-I~~--~vL~~l~~~~~~~l~~ 251 (295)
T PF06325_consen 202 ENAELNGVEDRIEVS---L-SEDLVEGKFDLVVAN-ILA--DVLLELAPDIASLLKP 251 (295)
T ss_dssp HHHHHTT-TTCEEES---C-TSCTCCS-EEEEEEE-S-H--HHHHHHHHHCHHHEEE
T ss_pred HHHHHcCCCeeEEEE---E-ecccccccCCEEEEC-CCH--HHHHHHHHHHHHhhCC
Confidence 999999998765432 1 122234799999974 332 2234455556666665
No 9
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.64 E-value=3.4e-16 Score=121.74 Aligned_cols=100 Identities=17% Similarity=0.177 Sum_probs=76.7
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcce--EEEEEcCCCCcCCCCCCCcEEEE
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCR--VMGLTWGFLDASIFDLNPNIILG 145 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~--~~~l~~~~~~~~~~~~~fDlIi~ 145 (169)
.+.|++|||+|||+|+++..+|+.|+.|+++|.+ ++|++.|++....+-.... ...+...+...+-...+||.|+|
T Consensus 87 ~~~g~~ilDvGCGgGLLSepLArlga~V~GID~s--~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvc 164 (282)
T KOG1270|consen 87 PLLGMKILDVGCGGGLLSEPLARLGAQVTGIDAS--DDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVC 164 (282)
T ss_pred ccCCceEEEeccCccccchhhHhhCCeeEeeccc--HHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeee
Confidence 3457889999999999999999999999999999 5699999987443322111 11122222111222347999999
Q ss_pred cCcCCCCCChHHHHHHHHHhccCC
Q 030935 146 ADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 146 sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
++++.|..+++.++..+.+.|+|+
T Consensus 165 sevleHV~dp~~~l~~l~~~lkP~ 188 (282)
T KOG1270|consen 165 SEVLEHVKDPQEFLNCLSALLKPN 188 (282)
T ss_pred HHHHHHHhCHHHHHHHHHHHhCCC
Confidence 999999999999999999999996
No 10
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.64 E-value=1.5e-15 Score=104.59 Aligned_cols=97 Identities=22% Similarity=0.190 Sum_probs=74.5
Q ss_pred CCCeEEEECCCCCHHHHHHHH--hCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCC-CcCCCCCCCcEEEEc
Q 030935 70 SGANVVELGAGTSLPGLVAAK--VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFL-DASIFDLNPNIILGA 146 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~--~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~-~~~~~~~~fDlIi~s 146 (169)
++.+|||||||+|..++.+++ .+++|+++|++ +++++.+++++...+...++. +..++. .......+||+|++.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s--~~~~~~a~~~~~~~~~~~~i~-~~~~d~~~~~~~~~~~D~v~~~ 77 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDIS--PEMLEIARERAAEEGLSDRIT-FVQGDAEFDPDFLEPFDLVICS 77 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESS--HHHHHHHHHHHHHTTTTTTEE-EEESCCHGGTTTSSCEEEEEEC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCC--HHHHHHHHHHHHhcCCCCCeE-EEECccccCcccCCCCCEEEEC
Confidence 578999999999999999999 67899999999 679999999996666554443 333444 223344589999999
Q ss_pred C-cCCCC---CChHHHHHHHHHhccCC
Q 030935 147 D-VFYDA---SGKICAFEILICSLFPI 169 (169)
Q Consensus 147 d-~iy~~---~~~~~l~~~l~~~L~p~ 169 (169)
. ..++. .....+++.+.+.|+|+
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~L~pg 104 (112)
T PF12847_consen 78 GFTLHFLLPLDERRRVLERIRRLLKPG 104 (112)
T ss_dssp SGSGGGCCHHHHHHHHHHHHHHHEEEE
T ss_pred CCccccccchhHHHHHHHHHHHhcCCC
Confidence 8 33222 45677899999999985
No 11
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.62 E-value=6.1e-15 Score=112.03 Aligned_cols=97 Identities=13% Similarity=0.113 Sum_probs=78.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcC
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGAD 147 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd 147 (169)
..++.+|||+|||+|..++.++++|.+|+++|++ +.+++.++++++.++++++....+... ...+.+||+|+++.
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s--~~~l~~a~~~~~~~~~~v~~~~~d~~~---~~~~~~fD~I~~~~ 102 (195)
T TIGR00477 28 TVAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHN--PASIASVLDMKARENLPLRTDAYDINA---AALNEDYDFIFSTV 102 (195)
T ss_pred cCCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECC--HHHHHHHHHHHHHhCCCceeEeccchh---ccccCCCCEEEEec
Confidence 3456799999999999999999999999999999 569999999988888765443333221 12245899999999
Q ss_pred cCCCC--CChHHHHHHHHHhccCC
Q 030935 148 VFYDA--SGKICAFEILICSLFPI 169 (169)
Q Consensus 148 ~iy~~--~~~~~l~~~l~~~L~p~ 169 (169)
++++. ...+.+++.+.++|+|+
T Consensus 103 ~~~~~~~~~~~~~l~~~~~~Lkpg 126 (195)
T TIGR00477 103 VFMFLQAGRVPEIIANMQAHTRPG 126 (195)
T ss_pred ccccCCHHHHHHHHHHHHHHhCCC
Confidence 98865 46789999999999996
No 12
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.62 E-value=8.3e-15 Score=111.47 Aligned_cols=97 Identities=19% Similarity=0.141 Sum_probs=78.0
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCcCCCCCCCcEEEEc
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASIFDLNPNIILGA 146 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~~~~~~~fDlIi~s 146 (169)
..++.+|||+|||+|..++.+++.|.+|+++|++ +.+++.+++++..+++. +++...++.+ ...+.+||+|+++
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S--~~~i~~a~~~~~~~~~~~v~~~~~d~~~---~~~~~~fD~I~~~ 102 (197)
T PRK11207 28 VVKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKN--PMSIANLERIKAAENLDNLHTAVVDLNN---LTFDGEYDFILST 102 (197)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCC--HHHHHHHHHHHHHcCCCcceEEecChhh---CCcCCCcCEEEEe
Confidence 3466899999999999999999999999999999 56999999998887764 3333333322 2234579999999
Q ss_pred CcCCCCC--ChHHHHHHHHHhccCC
Q 030935 147 DVFYDAS--GKICAFEILICSLFPI 169 (169)
Q Consensus 147 d~iy~~~--~~~~l~~~l~~~L~p~ 169 (169)
.++|+.. ..+.+++.+.++|+|+
T Consensus 103 ~~~~~~~~~~~~~~l~~i~~~Lkpg 127 (197)
T PRK11207 103 VVLMFLEAKTIPGLIANMQRCTKPG 127 (197)
T ss_pred cchhhCCHHHHHHHHHHHHHHcCCC
Confidence 9988653 6789999999999996
No 13
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.61 E-value=8.6e-15 Score=114.21 Aligned_cols=124 Identities=16% Similarity=0.167 Sum_probs=94.5
Q ss_pred EEEeccccCCcceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh-C-CeEEEEcCCCcHHHHHHHHHHH
Q 030935 37 IAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNRIEVLKNMRRVC 114 (169)
Q Consensus 37 i~i~~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-g-a~V~~~D~~~~~~~l~~~~~n~ 114 (169)
+.|.|.. .|++.--++.+|+.|..-. ..++|||||||+|++|+++|++ . ++|+++|++ +++.+.|++|+
T Consensus 18 ~~I~q~~---~~~~~~~DaiLL~~~~~~~----~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq--~~~a~~A~~nv 88 (248)
T COG4123 18 FFIIQDR---CGFRYGTDAILLAAFAPVP----KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQ--EEAAEMAQRNV 88 (248)
T ss_pred eEEEeCC---CccccccHHHHHHhhcccc----cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeC--HHHHHHHHHHH
Confidence 4555554 7788888999999998532 3679999999999999999987 4 599999999 57999999999
Q ss_pred HHhCCcceEE--EEEcCCCCcCCCCCCCcEEEEcCcCCCCCC------------------hHHHHHHHHHhccCC
Q 030935 115 EMNKLNCRVM--GLTWGFLDASIFDLNPNIILGADVFYDASG------------------KICAFEILICSLFPI 169 (169)
Q Consensus 115 ~~n~~~~~~~--~l~~~~~~~~~~~~~fDlIi~sd~iy~~~~------------------~~~l~~~l~~~L~p~ 169 (169)
+.|++.-++. ..+..++.......+||+|+|+.+.|.... ++++++.....|||+
T Consensus 89 ~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~ 163 (248)
T COG4123 89 ALNPLEERIQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPG 163 (248)
T ss_pred HhCcchhceeEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCC
Confidence 9998875543 333222222222337999999999995532 677888888888875
No 14
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.61 E-value=4.2e-15 Score=120.84 Aligned_cols=98 Identities=17% Similarity=0.191 Sum_probs=78.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc-CCCCCCCcEEEEcC
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-SIFDLNPNIILGAD 147 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~-~~~~~~fDlIi~sd 147 (169)
.++.+|||+|||+|.++..+++.|++|+++|.+ +++++.++.+...++....+. +..++... ...+.+||+|++.+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s--~~~i~~Ar~~~~~~~~~~~i~-~~~~dae~l~~~~~~FD~Vi~~~ 206 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAV--DKNVKIARLHADMDPVTSTIE-YLCTTAEKLADEGRKFDAVLSLE 206 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCC--HHHHHHHHHHHHhcCccccee-EEecCHHHhhhccCCCCEEEEhh
Confidence 467799999999999999999999999999999 569999998876654422221 33333222 22345899999999
Q ss_pred cCCCCCChHHHHHHHHHhccCC
Q 030935 148 VFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 148 ~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+++|..+.+.+++.+.+.|+|+
T Consensus 207 vLeHv~d~~~~L~~l~r~LkPG 228 (322)
T PLN02396 207 VIEHVANPAEFCKSLSALTIPN 228 (322)
T ss_pred HHHhcCCHHHHHHHHHHHcCCC
Confidence 9999999999999999999996
No 15
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.60 E-value=7.8e-15 Score=106.91 Aligned_cols=97 Identities=20% Similarity=0.196 Sum_probs=78.5
Q ss_pred CCCeEEEECCCCCHHHHHHHH-h--CCeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCcCCCCCCCcEEEE
Q 030935 70 SGANVVELGAGTSLPGLVAAK-V--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASIFDLNPNIILG 145 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~-~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~~~~~~~fDlIi~ 145 (169)
++.+|||+|||+|.++..+++ . +++++++|++ ++|++.++.+++.++.+ +++...++.+.... .+.+||+|++
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s--~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~-~~~~~D~I~~ 79 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDIS--EEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE-LEEKFDIIIS 79 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESS--HHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC-SSTTEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECc--HHHHHHhhcccccccccccceEEeehhccccc-cCCCeeEEEE
Confidence 567999999999999999994 3 5699999999 57999999999988886 45444444442211 2269999999
Q ss_pred cCcCCCCCChHHHHHHHHHhccCC
Q 030935 146 ADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 146 sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+.++|+..+...+++.+.+.|+|+
T Consensus 80 ~~~l~~~~~~~~~l~~~~~~lk~~ 103 (152)
T PF13847_consen 80 NGVLHHFPDPEKVLKNIIRLLKPG 103 (152)
T ss_dssp ESTGGGTSHHHHHHHHHHHHEEEE
T ss_pred cCchhhccCHHHHHHHHHHHcCCC
Confidence 999999999999999999999874
No 16
>PLN02244 tocopherol O-methyltransferase
Probab=99.59 E-value=4e-14 Score=116.08 Aligned_cols=111 Identities=14% Similarity=-0.013 Sum_probs=85.5
Q ss_pred HHHHHHHHhccCC-----CCCCeEEEECCCCCHHHHHHHHh-CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcC
Q 030935 56 VILAEYVWQQRYR-----FSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWG 129 (169)
Q Consensus 56 ~~La~~l~~~~~~-----~~~~~vLElGcGtGl~~l~~a~~-ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~ 129 (169)
..+.+.+.+.... .++.+|||+|||+|..+..+++. +++|+++|++ +.+++.++++++.++...++. +..+
T Consensus 99 ~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s--~~~i~~a~~~~~~~g~~~~v~-~~~~ 175 (340)
T PLN02244 99 IRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLS--PVQAARANALAAAQGLSDKVS-FQVA 175 (340)
T ss_pred HHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECC--HHHHHHHHHHHHhcCCCCceE-EEEc
Confidence 3444445544332 46789999999999999999885 7899999999 569999999998887643322 2223
Q ss_pred CCC-cCCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 130 FLD-ASIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 130 ~~~-~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+.. .++.+.+||+|++..++++..+...+++.+.+.|+||
T Consensus 176 D~~~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpG 216 (340)
T PLN02244 176 DALNQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPG 216 (340)
T ss_pred CcccCCCCCCCccEEEECCchhccCCHHHHHHHHHHHcCCC
Confidence 322 2344569999999999999999999999999999996
No 17
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.59 E-value=5.1e-14 Score=113.02 Aligned_cols=126 Identities=17% Similarity=0.222 Sum_probs=93.2
Q ss_pred CceEEEEeccccCCcceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHH
Q 030935 33 PSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 33 ~~~~i~i~~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~ 111 (169)
....+.+.+.+..++|.+ |.+....+++.+.. .++++|||+|||+|++++.+++.|+ +|+++|++ +.+++.++
T Consensus 126 ~~~~i~ldpg~aFgtG~h--~tt~l~l~~l~~~~--~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid--~~al~~a~ 199 (288)
T TIGR00406 126 DALIIMLDPGLAFGTGTH--PTTSLCLEWLEDLD--LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDID--PLAVESAR 199 (288)
T ss_pred CcEEEEECCCCcccCCCC--HHHHHHHHHHHhhc--CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECC--HHHHHHHH
Confidence 345677777776667654 77776666665543 3678999999999999999999887 89999999 56999999
Q ss_pred HHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 112 RVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 112 ~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+|+..|++...+... .++. ....+.+||+|+++-+ ...+..+++.+.+.|+|+
T Consensus 200 ~n~~~n~~~~~~~~~-~~~~-~~~~~~~fDlVvan~~---~~~l~~ll~~~~~~Lkpg 252 (288)
T TIGR00406 200 KNAELNQVSDRLQVK-LIYL-EQPIEGKADVIVANIL---AEVIKELYPQFSRLVKPG 252 (288)
T ss_pred HHHHHcCCCcceEEE-eccc-ccccCCCceEEEEecC---HHHHHHHHHHHHHHcCCC
Confidence 999999876443322 2222 1223458999998633 234567889999999986
No 18
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=3.6e-14 Score=113.03 Aligned_cols=118 Identities=19% Similarity=0.151 Sum_probs=90.6
Q ss_pred cceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC--eEEEEcCCCcHHHHHHHHHHHHHhCCcceEE
Q 030935 47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVM 124 (169)
Q Consensus 47 ~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~ 124 (169)
-|...|..--.-++.+.++.+...+.+|||||||.|.+|+.+++... +++++|.+ ..+++.+|+|++.|+++..
T Consensus 135 pGVFS~~~lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn--~~Av~~ar~Nl~~N~~~~~-- 210 (300)
T COG2813 135 PGVFSRDKLDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVN--ARAVESARKNLAANGVENT-- 210 (300)
T ss_pred CCCCcCCCcChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecC--HHHHHHHHHhHHHcCCCcc--
Confidence 35566665555556666665555556999999999999999999874 89999999 5699999999999998763
Q ss_pred EEEcCCCCcCCCCCCCcEEEEcCcCCCCCCh-----HHHHHHHHHhccCC
Q 030935 125 GLTWGFLDASIFDLNPNIILGADVFYDASGK-----ICAFEILICSLFPI 169 (169)
Q Consensus 125 ~l~~~~~~~~~~~~~fDlIi~sd~iy~~~~~-----~~l~~~l~~~L~p~ 169 (169)
...+++..+...+ +||+|||+.+++.-... ..+++.-.+.|++|
T Consensus 211 ~v~~s~~~~~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~g 259 (300)
T COG2813 211 EVWASNLYEPVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPG 259 (300)
T ss_pred EEEEecccccccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccC
Confidence 2444555555555 99999999999955443 36888888888875
No 19
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.57 E-value=7.1e-14 Score=112.07 Aligned_cols=96 Identities=20% Similarity=0.191 Sum_probs=78.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCc
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~ 148 (169)
.++.+|||+|||+|..++.+++.|.+|+++|++ +.+++.++++++.+++++++...+.. ....+.+||+|+++.+
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s--~~ai~~~~~~~~~~~l~v~~~~~D~~---~~~~~~~fD~I~~~~v 193 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLGFDVTAVDIN--QQSLENLQEIAEKENLNIRTGLYDIN---SASIQEEYDFILSTVV 193 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCCCEEEEEECC--HHHHHHHHHHHHHcCCceEEEEechh---cccccCCccEEEEcch
Confidence 345699999999999999999999999999999 56999999999888886554433322 2223568999999999
Q ss_pred CCCC--CChHHHHHHHHHhccCC
Q 030935 149 FYDA--SGKICAFEILICSLFPI 169 (169)
Q Consensus 149 iy~~--~~~~~l~~~l~~~L~p~ 169 (169)
+++. +..+.+++.+.+.|+|+
T Consensus 194 l~~l~~~~~~~~l~~~~~~Lkpg 216 (287)
T PRK12335 194 LMFLNRERIPAIIKNMQEHTNPG 216 (287)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCC
Confidence 8865 46788999999999996
No 20
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.57 E-value=3.1e-14 Score=117.82 Aligned_cols=120 Identities=18% Similarity=0.101 Sum_probs=84.5
Q ss_pred ceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCcc-eEE
Q 030935 48 GLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNC-RVM 124 (169)
Q Consensus 48 g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~-~~~ 124 (169)
|...|..--.-++++.++.+...+.+|||||||+|.+|+.+++.+ ++|+++|.+ +.+++.+++|++.|+... ...
T Consensus 206 gVFs~~~LD~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S--~~Av~~A~~N~~~n~~~~~~~v 283 (378)
T PRK15001 206 NVFSRTGLDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDES--PMAVASSRLNVETNMPEALDRC 283 (378)
T ss_pred CccCCCCcChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECC--HHHHHHHHHHHHHcCcccCceE
Confidence 333443323334455555443345699999999999999999874 599999999 569999999999887542 123
Q ss_pred EEEcCCCCcCCCCCCCcEEEEcCcCCCCC-----ChHHHHHHHHHhccCC
Q 030935 125 GLTWGFLDASIFDLNPNIILGADVFYDAS-----GKICAFEILICSLFPI 169 (169)
Q Consensus 125 ~l~~~~~~~~~~~~~fDlIi~sd~iy~~~-----~~~~l~~~l~~~L~p~ 169 (169)
.+.+++......+.+||+|+|+.+++... ....+++...+.|+|+
T Consensus 284 ~~~~~D~l~~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpG 333 (378)
T PRK15001 284 EFMINNALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKIN 333 (378)
T ss_pred EEEEccccccCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccC
Confidence 35566654444445899999987776432 2457888889999986
No 21
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.56 E-value=3.6e-14 Score=111.83 Aligned_cols=97 Identities=19% Similarity=0.210 Sum_probs=79.6
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcce--EEEEEcCCCCcCCCCCCCcEEEEcC
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCR--VMGLTWGFLDASIFDLNPNIILGAD 147 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~--~~~l~~~~~~~~~~~~~fDlIi~sd 147 (169)
++.+|||+|||+|..++.+++.|.+|+++|++ ++|++.+++++...+...+ +...+..+. ....+.+||+|++..
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s--~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l-~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLS--AEMIQRAKQAAEAKGVSDNMQFIHCAAQDI-AQHLETPVDLILFHA 120 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCCEEEEEECC--HHHHHHHHHHHHhcCCccceEEEEcCHHHH-hhhcCCCCCEEEehh
Confidence 56799999999999999999999999999999 5699999999988776433 222222222 122346899999999
Q ss_pred cCCCCCChHHHHHHHHHhccCC
Q 030935 148 VFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 148 ~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
++++..+...+++.+.+.|+|+
T Consensus 121 vl~~~~~~~~~l~~~~~~Lkpg 142 (255)
T PRK11036 121 VLEWVADPKSVLQTLWSVLRPG 142 (255)
T ss_pred HHHhhCCHHHHHHHHHHHcCCC
Confidence 9999999999999999999996
No 22
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.56 E-value=7.3e-14 Score=104.50 Aligned_cols=106 Identities=19% Similarity=0.126 Sum_probs=80.5
Q ss_pred hHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc
Q 030935 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA 133 (169)
Q Consensus 54 ~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~ 133 (169)
.+..|.+++. ..++++|||+|||+|.+++.+++.+.+|+++|++ +++++.+++|++.++..+++...++.+
T Consensus 7 d~~~l~~~l~----~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s--~~~~~~a~~~~~~~~~~~~~~~~d~~~--- 77 (179)
T TIGR00537 7 DSLLLEANLR----ELKPDDVLEIGAGTGLVAIRLKGKGKCILTTDIN--PFAVKELRENAKLNNVGLDVVMTDLFK--- 77 (179)
T ss_pred cHHHHHHHHH----hcCCCeEEEeCCChhHHHHHHHhcCCEEEEEECC--HHHHHHHHHHHHHcCCceEEEEccccc---
Confidence 3455666653 3356789999999999999999988899999999 579999999999888765544333322
Q ss_pred CCCCCCCcEEEEcCcCCCCCC---------------------hHHHHHHHHHhccCC
Q 030935 134 SIFDLNPNIILGADVFYDASG---------------------KICAFEILICSLFPI 169 (169)
Q Consensus 134 ~~~~~~fDlIi~sd~iy~~~~---------------------~~~l~~~l~~~L~p~ 169 (169)
. ...+||+|+++.+++.... ++.+++.+.+.|+|+
T Consensus 78 ~-~~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~g 133 (179)
T TIGR00537 78 G-VRGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEG 133 (179)
T ss_pred c-cCCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCC
Confidence 2 2348999999887764432 466888889999985
No 23
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.55 E-value=1.5e-13 Score=108.12 Aligned_cols=120 Identities=23% Similarity=0.302 Sum_probs=91.2
Q ss_pred CceEEEEeccccCCcceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHH
Q 030935 33 PSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 33 ~~~~i~i~~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~ 111 (169)
....+.+.+.+..++|. .+.+..+.+++.... .++++|||+|||+|++++.+++.|+ +|+++|++ +.+++.++
T Consensus 86 ~~~~i~i~p~~afgtg~--h~tt~~~l~~l~~~~--~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis--~~~l~~A~ 159 (250)
T PRK00517 86 DEINIELDPGMAFGTGT--HPTTRLCLEALEKLV--LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDID--PQAVEAAR 159 (250)
T ss_pred CeEEEEECCCCccCCCC--CHHHHHHHHHHHhhc--CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECC--HHHHHHHH
Confidence 45567777777777776 777888777776543 3678999999999999999999887 59999999 56999999
Q ss_pred HHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 112 RVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 112 ~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+|++.|++...+. +.-+ +.+||+|+++-. ...+..+++.+.+.|+|+
T Consensus 160 ~n~~~~~~~~~~~-~~~~-------~~~fD~Vvani~---~~~~~~l~~~~~~~Lkpg 206 (250)
T PRK00517 160 ENAELNGVELNVY-LPQG-------DLKADVIVANIL---ANPLLELAPDLARLLKPG 206 (250)
T ss_pred HHHHHcCCCceEE-EccC-------CCCcCEEEEcCc---HHHHHHHHHHHHHhcCCC
Confidence 9999998743222 2111 117999998532 234567888999999986
No 24
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.53 E-value=1.8e-14 Score=95.74 Aligned_cols=89 Identities=21% Similarity=0.173 Sum_probs=70.7
Q ss_pred EEECCCCCHHHHHHHHh-CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCcCCCCC
Q 030935 75 VELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFYDAS 153 (169)
Q Consensus 75 LElGcGtGl~~l~~a~~-ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~iy~~~ 153 (169)
||+|||+|..+..+++. +.+|+++|.+ +++++.++++....+.. +...+..+. ++.+.+||+|++..++++.+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~--~~~~~~~~~~~~~~~~~--~~~~d~~~l--~~~~~sfD~v~~~~~~~~~~ 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDIS--EEMLEQARKRLKNEGVS--FRQGDAEDL--PFPDNSFDVVFSNSVLHHLE 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES---HHHHHHHHHHTTTSTEE--EEESBTTSS--SS-TT-EEEEEEESHGGGSS
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCC--HHHHHHHHhcccccCch--heeehHHhC--ccccccccccccccceeecc
Confidence 89999999999999999 7799999999 56999999987755544 333333332 45567999999999999999
Q ss_pred ChHHHHHHHHHhccCC
Q 030935 154 GKICAFEILICSLFPI 169 (169)
Q Consensus 154 ~~~~l~~~l~~~L~p~ 169 (169)
+.+.+++.+.+.|||+
T Consensus 75 ~~~~~l~e~~rvLk~g 90 (95)
T PF08241_consen 75 DPEAALREIYRVLKPG 90 (95)
T ss_dssp HHHHHHHHHHHHEEEE
T ss_pred CHHHHHHHHHHHcCcC
Confidence 9999999999999985
No 25
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.51 E-value=2.6e-13 Score=110.49 Aligned_cols=114 Identities=17% Similarity=0.159 Sum_probs=80.6
Q ss_pred eecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHh--CCcceEEEE
Q 030935 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMN--KLNCRVMGL 126 (169)
Q Consensus 50 ~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n--~~~~~~~~l 126 (169)
..|++-.... .+..+....+|++|||+|||+|..+..++..|+ .|+++|.+ +.++..++...+.. ..++.+...
T Consensus 103 ~ew~s~~k~~-~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S--~~~l~q~~a~~~~~~~~~~i~~~~~ 179 (322)
T PRK15068 103 TEWRSDWKWD-RVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPS--QLFLCQFEAVRKLLGNDQRAHLLPL 179 (322)
T ss_pred ceehHHhHHH-HHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCC--HHHHHHHHHHHHhcCCCCCeEEEeC
Confidence 3566544433 233344456889999999999999999999887 69999999 44765544332222 223333333
Q ss_pred EcCCCCcCCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 127 TWGFLDASIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 127 ~~~~~~~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+..+. +. +.+||+|+|..++||..+...+++.+++.|+||
T Consensus 180 d~e~l--p~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpG 219 (322)
T PRK15068 180 GIEQL--PA-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPG 219 (322)
T ss_pred CHHHC--CC-cCCcCEEEECChhhccCCHHHHHHHHHHhcCCC
Confidence 22222 22 568999999999999999999999999999996
No 26
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.51 E-value=3.4e-13 Score=109.27 Aligned_cols=100 Identities=14% Similarity=0.129 Sum_probs=74.0
Q ss_pred ccCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHH--hCCcceEEEEEcCCCCcCCCCCCCc
Q 030935 65 QRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEM--NKLNCRVMGLTWGFLDASIFDLNPN 141 (169)
Q Consensus 65 ~~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~--n~~~~~~~~l~~~~~~~~~~~~~fD 141 (169)
+....+|++|||+|||+|.....++..|+ .|+++|.++ .|+..++...+. +...+.+......+. ....+||
T Consensus 116 ~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~--~ml~q~~~~~~~~~~~~~v~~~~~~ie~l---p~~~~FD 190 (314)
T TIGR00452 116 HLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTV--LFLCQFEAVRKLLDNDKRAILEPLGIEQL---HELYAFD 190 (314)
T ss_pred hcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCH--HHHHHHHHHHHHhccCCCeEEEECCHHHC---CCCCCcC
Confidence 34567889999999999999999888887 699999994 587665433222 122223322222222 1234899
Q ss_pred EEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 142 IILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 142 lIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+|+|..++||..+...+++.+++.|+||
T Consensus 191 ~V~s~gvL~H~~dp~~~L~el~r~LkpG 218 (314)
T TIGR00452 191 TVFSMGVLYHRKSPLEHLKQLKHQLVIK 218 (314)
T ss_pred EEEEcchhhccCCHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999996
No 27
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.51 E-value=5.1e-15 Score=100.23 Aligned_cols=93 Identities=13% Similarity=-0.008 Sum_probs=60.7
Q ss_pred EEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCcc-eEEEEEcCCCCcCCCCCCCcEEEEcCcCCC
Q 030935 75 VELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNC-RVMGLTWGFLDASIFDLNPNIILGADVFYD 151 (169)
Q Consensus 75 LElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~-~~~~l~~~~~~~~~~~~~fDlIi~sd~iy~ 151 (169)
||+|||+|..+..++.. ..+++++|+|+. |++.+++++....... ....+.-.+........+||+|+++.++++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~--~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~ 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPS--MLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHH 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSS--TTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHH--HHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhh
Confidence 79999999999988887 569999999975 9988888877665432 222222222222222359999999999999
Q ss_pred CCChHHHHHHHHHhccCC
Q 030935 152 ASGKICAFEILICSLFPI 169 (169)
Q Consensus 152 ~~~~~~l~~~l~~~L~p~ 169 (169)
.++.+.+++.+.+.|+||
T Consensus 79 l~~~~~~l~~~~~~L~pg 96 (99)
T PF08242_consen 79 LEDIEAVLRNIYRLLKPG 96 (99)
T ss_dssp -S-HHHHHHHHTTT-TSS
T ss_pred hhhHHHHHHHHHHHcCCC
Confidence 999999999999999997
No 28
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.51 E-value=1.7e-13 Score=103.59 Aligned_cols=98 Identities=21% Similarity=0.183 Sum_probs=75.8
Q ss_pred CCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEc
Q 030935 67 YRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (169)
Q Consensus 67 ~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~s 146 (169)
...+..++||||||.|.-++++|++|..|+++|.+ +..++.+++.++..+++++....+.... ..+..||+|+++
T Consensus 27 ~~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s--~~al~~l~~~a~~~~l~i~~~~~Dl~~~---~~~~~yD~I~st 101 (192)
T PF03848_consen 27 PLLKPGKALDLGCGEGRNALYLASQGFDVTAVDIS--PVALEKLQRLAEEEGLDIRTRVADLNDF---DFPEEYDFIVST 101 (192)
T ss_dssp TTS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESS--HHHHHHHHHHHHHTT-TEEEEE-BGCCB---S-TTTEEEEEEE
T ss_pred hhcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECC--HHHHHHHHHHHhhcCceeEEEEecchhc---cccCCcCEEEEE
Confidence 34567899999999999999999999999999999 5689999888888888876665554432 234689999987
Q ss_pred CcCCC--CCChHHHHHHHHHhccCC
Q 030935 147 DVFYD--ASGKICAFEILICSLFPI 169 (169)
Q Consensus 147 d~iy~--~~~~~~l~~~l~~~L~p~ 169 (169)
-++++ .+..+.+++.+++.++||
T Consensus 102 ~v~~fL~~~~~~~i~~~m~~~~~pG 126 (192)
T PF03848_consen 102 VVFMFLQRELRPQIIENMKAATKPG 126 (192)
T ss_dssp SSGGGS-GGGHHHHHHHHHHTEEEE
T ss_pred EEeccCCHHHHHHHHHHHHhhcCCc
Confidence 66654 466788999999999986
No 29
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.50 E-value=3.7e-13 Score=114.64 Aligned_cols=114 Identities=14% Similarity=0.039 Sum_probs=84.3
Q ss_pred cchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh-CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCC
Q 030935 52 WPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGF 130 (169)
Q Consensus 52 W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~ 130 (169)
++.+..-++.+.+.....++.+|||+|||+|.+++.+++. +.+|+++|++ +.+++.+++|....+..+.+...++..
T Consensus 248 v~~~v~~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS--~~~l~~A~~~~~~~~~~v~~~~~d~~~ 325 (475)
T PLN02336 248 STGGLETTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLS--VNMISFALERAIGRKCSVEFEVADCTK 325 (475)
T ss_pred CCchHHHHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECC--HHHHHHHHHHhhcCCCceEEEEcCccc
Confidence 3334434444444444446789999999999999988875 6799999999 569999998876333334433333322
Q ss_pred CCcCCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 131 LDASIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 131 ~~~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.+..+.+||+|++.+++++..+.+.+++.+.+.|+|+
T Consensus 326 --~~~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~Lkpg 362 (475)
T PLN02336 326 --KTYPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPG 362 (475)
T ss_pred --CCCCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCC
Confidence 1233458999999999999999999999999999996
No 30
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.50 E-value=3.9e-13 Score=104.70 Aligned_cols=113 Identities=16% Similarity=0.038 Sum_probs=88.7
Q ss_pred cceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEE
Q 030935 47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVM 124 (169)
Q Consensus 47 ~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~ 124 (169)
.-.+.|... +.......+|.+|||+|||||-+++.+++.. ++|+++|+| +.|++.+++.+...+... .
T Consensus 34 g~~~~Wr~~------~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s--~~ML~~a~~k~~~~~~~~--i 103 (238)
T COG2226 34 GLHRLWRRA------LISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDIS--ESMLEVAREKLKKKGVQN--V 103 (238)
T ss_pred cchHHHHHH------HHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECC--HHHHHHHHHHhhccCccc--e
Confidence 345778763 3333323378999999999999999999975 599999999 469999999988655442 2
Q ss_pred EEEcCCC-CcCCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 125 GLTWGFL-DASIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 125 ~l~~~~~-~~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.+.-++. ..++.+.+||+|.++-.+.+..+++..++.+.+.||||
T Consensus 104 ~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpg 149 (238)
T COG2226 104 EFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPG 149 (238)
T ss_pred EEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCC
Confidence 2333333 33566789999999999999999999999999999997
No 31
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.50 E-value=2.6e-13 Score=111.31 Aligned_cols=93 Identities=19% Similarity=0.189 Sum_probs=74.7
Q ss_pred CCeEEEECCCCCHHHHHHHHhCC--eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCc
Q 030935 71 GANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~~ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~ 148 (169)
..+|||+|||+|.+++.+++++. +|+++|++ +.+++.+++|++.|++..++ .+.+.... .+.+||+|+++.+
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis--~~Al~~A~~nl~~n~l~~~~---~~~D~~~~-~~~~fDlIvsNPP 270 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVS--AAALESSRATLAANGLEGEV---FASNVFSD-IKGRFDMIISNPP 270 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECC--HHHHHHHHHHHHHcCCCCEE---EEcccccc-cCCCccEEEECCC
Confidence 45899999999999999998754 89999999 56999999999999886543 34443332 3468999999888
Q ss_pred CCCC-----CChHHHHHHHHHhccCC
Q 030935 149 FYDA-----SGKICAFEILICSLFPI 169 (169)
Q Consensus 149 iy~~-----~~~~~l~~~l~~~L~p~ 169 (169)
+|+. ...+.+++...+.|+|+
T Consensus 271 FH~g~~~~~~~~~~~i~~a~~~Lkpg 296 (342)
T PRK09489 271 FHDGIQTSLDAAQTLIRGAVRHLNSG 296 (342)
T ss_pred ccCCccccHHHHHHHHHHHHHhcCcC
Confidence 7753 34578999999999986
No 32
>PRK14967 putative methyltransferase; Provisional
Probab=99.48 E-value=7.9e-13 Score=102.30 Aligned_cols=111 Identities=17% Similarity=0.157 Sum_probs=82.9
Q ss_pred chHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCC
Q 030935 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFL 131 (169)
Q Consensus 53 ~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~ 131 (169)
+.+..|++++.... ..++.+|||+|||+|.+++.+++.++ +|+++|++ +.+++.+++|++.++..+.+...++.
T Consensus 20 ~ds~~l~~~l~~~~-~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s--~~~l~~a~~n~~~~~~~~~~~~~d~~-- 94 (223)
T PRK14967 20 EDTQLLADALAAEG-LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDIS--RRAVRSARLNALLAGVDVDVRRGDWA-- 94 (223)
T ss_pred CcHHHHHHHHHhcc-cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECC--HHHHHHHHHHHHHhCCeeEEEECchh--
Confidence 35778888876542 34678999999999999999998876 89999999 56999999999988876554443333
Q ss_pred CcCCCCCCCcEEEEcCcCCCCCC---------------------hHHHHHHHHHhccCC
Q 030935 132 DASIFDLNPNIILGADVFYDASG---------------------KICAFEILICSLFPI 169 (169)
Q Consensus 132 ~~~~~~~~fDlIi~sd~iy~~~~---------------------~~~l~~~l~~~L~p~ 169 (169)
......+||+|+++.+.+.... +..+++.+.+.|+|+
T Consensus 95 -~~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~g 152 (223)
T PRK14967 95 -RAVEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPG 152 (223)
T ss_pred -hhccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCC
Confidence 2333468999999765442211 456778888889885
No 33
>PRK14968 putative methyltransferase; Provisional
Probab=99.48 E-value=6.8e-13 Score=99.19 Aligned_cols=111 Identities=21% Similarity=0.127 Sum_probs=83.2
Q ss_pred eecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCc---ceEEEE
Q 030935 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN---CRVMGL 126 (169)
Q Consensus 50 ~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~---~~~~~l 126 (169)
..++.+.+|.+++.. .++++|||+|||+|..+..+++.+++|+++|++ +++++.+++|+..++.. +.+...
T Consensus 7 ~p~~~~~~l~~~~~~----~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s--~~~~~~a~~~~~~~~~~~~~~~~~~~ 80 (188)
T PRK14968 7 EPAEDSFLLAENAVD----KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDIN--PYAVECAKCNAKLNNIRNNGVEVIRS 80 (188)
T ss_pred CcchhHHHHHHhhhc----cCCCEEEEEccccCHHHHHHHhhcceEEEEECC--HHHHHHHHHHHHHcCCCCcceEEEec
Confidence 346677777777753 467899999999999999999998899999999 56999999999888765 333322
Q ss_pred EcCCCCcCCCCCCCcEEEEcCcCCCCC---------------------ChHHHHHHHHHhccCC
Q 030935 127 TWGFLDASIFDLNPNIILGADVFYDAS---------------------GKICAFEILICSLFPI 169 (169)
Q Consensus 127 ~~~~~~~~~~~~~fDlIi~sd~iy~~~---------------------~~~~l~~~l~~~L~p~ 169 (169)
+......+.+||+|+++.+++... .++.+++.+.+.|+|+
T Consensus 81 ---d~~~~~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~g 141 (188)
T PRK14968 81 ---DLFEPFRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPG 141 (188)
T ss_pred ---cccccccccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCC
Confidence 222333444899999977665421 2456889999999985
No 34
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.48 E-value=4.4e-13 Score=105.24 Aligned_cols=103 Identities=15% Similarity=0.001 Sum_probs=78.0
Q ss_pred HHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCC
Q 030935 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDL 138 (169)
Q Consensus 59 a~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~ 138 (169)
++.+.+.....++.+|||+|||+|.++..+++.+.+|+++|++ +.|++.++++... ..+...+... .+..+.
T Consensus 31 a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s--~~~l~~a~~~~~~----~~~~~~d~~~--~~~~~~ 102 (251)
T PRK10258 31 ADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLS--PPMLAQARQKDAA----DHYLAGDIES--LPLATA 102 (251)
T ss_pred HHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECC--HHHHHHHHhhCCC----CCEEEcCccc--CcCCCC
Confidence 3444443333356799999999999999998888999999999 5699988876431 1222222222 123445
Q ss_pred CCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 139 NPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 139 ~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+||+|+++.++++..++..+++.+.+.|+|+
T Consensus 103 ~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~g 133 (251)
T PRK10258 103 TFDLAWSNLAVQWCGNLSTALRELYRVVRPG 133 (251)
T ss_pred cEEEEEECchhhhcCCHHHHHHHHHHHcCCC
Confidence 8999999999999999999999999999996
No 35
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.48 E-value=6.3e-13 Score=104.65 Aligned_cols=102 Identities=17% Similarity=0.128 Sum_probs=77.0
Q ss_pred HHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCC
Q 030935 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF 136 (169)
Q Consensus 59 a~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~ 136 (169)
++.+.......++.+|||+|||+|.++..+++. +.+|+++|++ +.|++.++++.. ++.+. .++......
T Consensus 20 ~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s--~~~i~~a~~~~~----~~~~~---~~d~~~~~~ 90 (258)
T PRK01683 20 ARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSS--PAMLAEARSRLP----DCQFV---EADIASWQP 90 (258)
T ss_pred HHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECC--HHHHHHHHHhCC----CCeEE---ECchhccCC
Confidence 334444444456789999999999999988876 4589999999 569999987642 12222 223222223
Q ss_pred CCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 137 DLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 137 ~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+.+||+|+++.++++..+...+++.+.+.|+|+
T Consensus 91 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg 123 (258)
T PRK01683 91 PQALDLIFANASLQWLPDHLELFPRLVSLLAPG 123 (258)
T ss_pred CCCccEEEEccChhhCCCHHHHHHHHHHhcCCC
Confidence 458999999999999999999999999999996
No 36
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.48 E-value=4.1e-13 Score=106.49 Aligned_cols=114 Identities=12% Similarity=0.030 Sum_probs=83.7
Q ss_pred eecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh-CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEc
Q 030935 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTW 128 (169)
Q Consensus 50 ~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~ 128 (169)
++-|.+..-+..+.......++.+|||+|||+|..+..+++. +++|+++|++ +.+++.++++.... ..+.+. .
T Consensus 32 ~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s--~~~~~~a~~~~~~~-~~i~~~---~ 105 (263)
T PTZ00098 32 YISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDIC--EKMVNIAKLRNSDK-NKIEFE---A 105 (263)
T ss_pred CCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECC--HHHHHHHHHHcCcC-CceEEE---E
Confidence 344444444555665555667889999999999999888764 6799999999 56999998876532 223322 3
Q ss_pred CCCCc-CCCCCCCcEEEEcCcCCCCC--ChHHHHHHHHHhccCC
Q 030935 129 GFLDA-SIFDLNPNIILGADVFYDAS--GKICAFEILICSLFPI 169 (169)
Q Consensus 129 ~~~~~-~~~~~~fDlIi~sd~iy~~~--~~~~l~~~l~~~L~p~ 169 (169)
++... +..+.+||+|++.+++++.. +...+++.+.+.|+|+
T Consensus 106 ~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPG 149 (263)
T PTZ00098 106 NDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPN 149 (263)
T ss_pred CCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCC
Confidence 33322 33456899999999888764 7899999999999996
No 37
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.48 E-value=3.6e-13 Score=106.13 Aligned_cols=92 Identities=15% Similarity=0.094 Sum_probs=72.9
Q ss_pred CCCCCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEE
Q 030935 67 YRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIIL 144 (169)
Q Consensus 67 ~~~~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi 144 (169)
...++.+|||+|||+|.++..+++. +.+|+++|++ +.|++.++++ ++ .+.. ++........+||+|+
T Consensus 26 ~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s--~~~~~~a~~~----~~--~~~~---~d~~~~~~~~~fD~v~ 94 (255)
T PRK14103 26 GAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSS--PEMVAAARER----GV--DART---GDVRDWKPKPDTDVVV 94 (255)
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECC--HHHHHHHHhc----CC--cEEE---cChhhCCCCCCceEEE
Confidence 3446789999999999999999887 5699999999 5699988653 22 2332 3322222345899999
Q ss_pred EcCcCCCCCChHHHHHHHHHhccCC
Q 030935 145 GADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 145 ~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
++.++++..+.+.+++.+.+.|+||
T Consensus 95 ~~~~l~~~~d~~~~l~~~~~~Lkpg 119 (255)
T PRK14103 95 SNAALQWVPEHADLLVRWVDELAPG 119 (255)
T ss_pred EehhhhhCCCHHHHHHHHHHhCCCC
Confidence 9999999999999999999999996
No 38
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.47 E-value=1.5e-12 Score=103.12 Aligned_cols=97 Identities=19% Similarity=0.091 Sum_probs=74.9
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHh-C--CeEEEEcCCCcHHHHHHHHHHHHH--hCC--cceEEEEEcCCCCc-CCCCCC
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEM--NKL--NCRVMGLTWGFLDA-SIFDLN 139 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~-g--a~V~~~D~~~~~~~l~~~~~n~~~--n~~--~~~~~~l~~~~~~~-~~~~~~ 139 (169)
..++.+|||+|||||.++..+++. + .+|+++|++ ++|++.++++... ... ++++. .++... +..+.+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S--~~ml~~A~~r~~~~~~~~~~~i~~~---~~d~~~lp~~~~s 145 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFS--SEQLAVAASRQELKAKSCYKNIEWI---EGDATDLPFDDCY 145 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECC--HHHHHHHHHHhhhhhhccCCCeEEE---EcccccCCCCCCC
Confidence 346789999999999999988875 3 489999999 5699999876542 111 22222 233322 344568
Q ss_pred CcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 140 PNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 140 fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
||+|+++.++++..+...+++.+.+.|+||
T Consensus 146 fD~V~~~~~l~~~~d~~~~l~ei~rvLkpG 175 (261)
T PLN02233 146 FDAITMGYGLRNVVDRLKAMQEMYRVLKPG 175 (261)
T ss_pred EeEEEEecccccCCCHHHHHHHHHHHcCcC
Confidence 999999999999999999999999999996
No 39
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.47 E-value=1.6e-12 Score=100.61 Aligned_cols=100 Identities=14% Similarity=0.046 Sum_probs=77.3
Q ss_pred CCCCCCeEEEECCCCCHHHHHHHHh-C--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEE
Q 030935 67 YRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNII 143 (169)
Q Consensus 67 ~~~~~~~vLElGcGtGl~~l~~a~~-g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlI 143 (169)
...++.+|||+|||+|..+..+++. + .+|+++|++ +.+++.++++++.++.. ++....+.....+..+.+||+|
T Consensus 42 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s--~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~V 118 (231)
T TIGR02752 42 NVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFS--ENMLSVGRQKVKDAGLH-NVELVHGNAMELPFDDNSFDYV 118 (231)
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECC--HHHHHHHHHHHHhcCCC-ceEEEEechhcCCCCCCCccEE
Confidence 3446789999999999999988875 3 489999999 56999999998776653 2222222221122334689999
Q ss_pred EEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 144 LGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 144 i~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+++.++.+..+...+++.+.+.|+|+
T Consensus 119 ~~~~~l~~~~~~~~~l~~~~~~Lk~g 144 (231)
T TIGR02752 119 TIGFGLRNVPDYMQVLREMYRVVKPG 144 (231)
T ss_pred EEecccccCCCHHHHHHHHHHHcCcC
Confidence 99999999999999999999999996
No 40
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.47 E-value=6.7e-13 Score=105.76 Aligned_cols=110 Identities=18% Similarity=0.091 Sum_probs=81.4
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh-CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA 133 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~ 133 (169)
-....+++.......+|.+|||||||.|.+++.+++. |++|+++.+| ++..+.+++.++..++..++. +...+...
T Consensus 47 Q~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS--~~Q~~~a~~~~~~~gl~~~v~-v~~~D~~~ 123 (273)
T PF02353_consen 47 QERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLS--EEQAEYARERIREAGLEDRVE-VRLQDYRD 123 (273)
T ss_dssp HHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES---HHHHHHHHHHHHCSTSSSTEE-EEES-GGG
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECC--HHHHHHHHHHHHhcCCCCceE-EEEeeccc
Confidence 4445567777777889999999999999999999987 9999999999 569999999999888764433 33344332
Q ss_pred CCCCCCCcEEEEcCcCCCC--CChHHHHHHHHHhccCC
Q 030935 134 SIFDLNPNIILGADVFYDA--SGKICAFEILICSLFPI 169 (169)
Q Consensus 134 ~~~~~~fDlIi~sd~iy~~--~~~~~l~~~l~~~L~p~ 169 (169)
.+.+||-|++-.++.+. ..++.+++.+.+.|+|+
T Consensus 124 --~~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkpg 159 (273)
T PF02353_consen 124 --LPGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPG 159 (273)
T ss_dssp -----S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETT
T ss_pred --cCCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCC
Confidence 22399999999999988 67899999999999996
No 41
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.46 E-value=1.7e-12 Score=98.10 Aligned_cols=91 Identities=20% Similarity=0.178 Sum_probs=71.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCcCCCCCCCcEEEEc
Q 030935 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASIFDLNPNIILGA 146 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~~~~~~~fDlIi~s 146 (169)
++.+|||+|||+|..++.+++. +++|+++|.+ +++++.+++|++.++++ +++...+..+ .....+||+|++.
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s--~~~l~~A~~~~~~~~l~~i~~~~~d~~~---~~~~~~fDlV~~~ 119 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSL--GKKIAFLREVAAELGLKNVTVVHGRAEE---FGQEEKFDVVTSR 119 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCc--HHHHHHHHHHHHHcCCCCEEEEeccHhh---CCCCCCccEEEEc
Confidence 3789999999999999988863 4599999999 56999999999998875 3333333222 1224589999986
Q ss_pred CcCCCCCChHHHHHHHHHhccCC
Q 030935 147 DVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 147 d~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
. ...++.+++.+.+.|+|+
T Consensus 120 ~----~~~~~~~l~~~~~~LkpG 138 (187)
T PRK00107 120 A----VASLSDLVELCLPLLKPG 138 (187)
T ss_pred c----ccCHHHHHHHHHHhcCCC
Confidence 4 356889999999999996
No 42
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.46 E-value=1.1e-12 Score=101.84 Aligned_cols=110 Identities=16% Similarity=0.120 Sum_probs=87.2
Q ss_pred HHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCC
Q 030935 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF 136 (169)
Q Consensus 57 ~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~ 136 (169)
...+|+.......++.+|||+|||+|.++..+++.+++|+++|.+ +.+++.++.++..++....+...++..... ..
T Consensus 35 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~ 111 (233)
T PRK05134 35 LRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLGADVTGIDAS--EENIEVARLHALESGLKIDYRQTTAEELAA-EH 111 (233)
T ss_pred HHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCC--HHHHHHHHHHHHHcCCceEEEecCHHHhhh-hc
Confidence 334666666555678899999999999999999988899999999 569999999988776655444343333211 12
Q ss_pred CCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 137 DLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 137 ~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
..+||+|+++.++++..+...+++.+.+.|+|+
T Consensus 112 ~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~g 144 (233)
T PRK05134 112 PGQFDVVTCMEMLEHVPDPASFVRACAKLVKPG 144 (233)
T ss_pred CCCccEEEEhhHhhccCCHHHHHHHHHHHcCCC
Confidence 358999999999999999999999999999985
No 43
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=5.8e-13 Score=106.51 Aligned_cols=92 Identities=23% Similarity=0.277 Sum_probs=68.0
Q ss_pred chHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC--eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCC
Q 030935 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGF 130 (169)
Q Consensus 53 ~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~ 130 (169)
|.+..|.+.+......... +|||||||||.+++.+++.+. +|+++|+| +++++.|++|++.|++ .++..... +
T Consensus 94 ~dTe~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis--~~Al~~A~~Na~~~~l-~~~~~~~~-d 168 (280)
T COG2890 94 PDTELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDIS--PDALALARENAERNGL-VRVLVVQS-D 168 (280)
T ss_pred CchHHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEEEECC--HHHHHHHHHHHHHcCC-ccEEEEee-e
Confidence 4577777776522211112 799999999999999999875 89999999 6799999999999997 44333333 4
Q ss_pred CCcCCCCCCCcEEEEcCcCC
Q 030935 131 LDASIFDLNPNIILGADVFY 150 (169)
Q Consensus 131 ~~~~~~~~~fDlIi~sd~iy 150 (169)
+..+... +||+|+++.+.=
T Consensus 169 lf~~~~~-~fDlIVsNPPYi 187 (280)
T COG2890 169 LFEPLRG-KFDLIVSNPPYI 187 (280)
T ss_pred cccccCC-ceeEEEeCCCCC
Confidence 4444433 999999876653
No 44
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.45 E-value=1.5e-13 Score=99.86 Aligned_cols=89 Identities=24% Similarity=0.145 Sum_probs=69.3
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcC
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGAD 147 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd 147 (169)
..++++|||+|||+|..+..+++.|.+|+++|++ +.+++. .........-. .....+.+||+|+|++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~--~~~~~~---------~~~~~~~~~~~--~~~~~~~~fD~i~~~~ 86 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDIS--PQMIEK---------RNVVFDNFDAQ--DPPFPDGSFDLIICND 86 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESS--HHHHHH---------TTSEEEEEECH--THHCHSSSEEEEEEES
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECC--HHHHhh---------hhhhhhhhhhh--hhhccccchhhHhhHH
Confidence 3467899999999999999999999999999999 457766 11111111111 1122456999999999
Q ss_pred cCCCCCChHHHHHHHHHhccCC
Q 030935 148 VFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 148 ~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
++++..+...+++.+.+.|+|+
T Consensus 87 ~l~~~~d~~~~l~~l~~~Lkpg 108 (161)
T PF13489_consen 87 VLEHLPDPEEFLKELSRLLKPG 108 (161)
T ss_dssp SGGGSSHHHHHHHHHHHCEEEE
T ss_pred HHhhcccHHHHHHHHHHhcCCC
Confidence 9999999999999999999985
No 45
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.45 E-value=5.9e-13 Score=103.86 Aligned_cols=111 Identities=18% Similarity=0.100 Sum_probs=72.4
Q ss_pred eeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh-C--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEE
Q 030935 49 LFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMG 125 (169)
Q Consensus 49 ~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~ 125 (169)
.+.|.. .+.+.+ ...+|.+|||+|||||.++..+++. + .+|+++|++ ++|++.++++++..+.. ++.
T Consensus 32 ~~~wr~--~~~~~~----~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s--~~ML~~a~~k~~~~~~~-~i~- 101 (233)
T PF01209_consen 32 DRRWRR--KLIKLL----GLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDIS--PGMLEVARKKLKREGLQ-NIE- 101 (233)
T ss_dssp -----S--HHHHHH----T--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES---HHHHHHHHHHHHHTT---SEE-
T ss_pred HHHHHH--HHHhcc----CCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCC--HHHHHHHHHHHHhhCCC-Cee-
Confidence 456776 333333 3346789999999999999998875 3 489999999 67999999999876653 222
Q ss_pred EEcCCC-CcCCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 126 LTWGFL-DASIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 126 l~~~~~-~~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+..++. ..++.+.+||+|+++-.+.+..+.+..++.+.+.||||
T Consensus 102 ~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPG 146 (233)
T PF01209_consen 102 FVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPG 146 (233)
T ss_dssp EEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEE
T ss_pred EEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCC
Confidence 333333 23455679999999999999999999999999999996
No 46
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.44 E-value=1.3e-12 Score=98.18 Aligned_cols=92 Identities=17% Similarity=0.197 Sum_probs=70.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCcCCCCCCCcEEEE
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASIFDLNPNIILG 145 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~~~~~~~fDlIi~ 145 (169)
.++.+|||+|||+|.+++.+++.+ ++|+++|.+ +.+++.+++|++.+++. +++...+..+ .....+||+|++
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s--~~~~~~a~~~~~~~~~~~i~~i~~d~~~---~~~~~~fD~I~s 115 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESN--HKKVAFLREVKAELGLNNVEIVNGRAED---FQHEEQFDVITS 115 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCc--HHHHHHHHHHHHHhCCCCeEEEecchhh---ccccCCccEEEe
Confidence 358899999999999999988765 489999999 46999999999888764 3333333322 223458999998
Q ss_pred cCcCCCCCChHHHHHHHHHhccCC
Q 030935 146 ADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 146 sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.. ...++.+++.+.+.|+|+
T Consensus 116 ~~----~~~~~~~~~~~~~~Lkpg 135 (181)
T TIGR00138 116 RA----LASLNVLLELTLNLLKVG 135 (181)
T ss_pred hh----hhCHHHHHHHHHHhcCCC
Confidence 54 345788999999999986
No 47
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.43 E-value=1.9e-12 Score=102.78 Aligned_cols=108 Identities=16% Similarity=0.083 Sum_probs=89.3
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh-CCeEEEEcCCCcHHHHHHHHHHHHHhCCc--ceEEEEEcCCC
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFL 131 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-ga~V~~~D~~~~~~~l~~~~~n~~~n~~~--~~~~~l~~~~~ 131 (169)
...-.+.+.+.....+|.+|||+|||-|.+++.+|+. |.+|+++++| ++..+.+++.++..++. +++.-.+|.++
T Consensus 57 Q~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS--~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~ 134 (283)
T COG2230 57 QRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLS--EEQLAYAEKRIAARGLEDNVEVRLQDYRDF 134 (283)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCC--HHHHHHHHHHHHHcCCCcccEEEecccccc
Confidence 3334455666677779999999999999999999986 7899999999 56999999999988887 44444555544
Q ss_pred CcCCCCCCCcEEEEcCcCCCCCC--hHHHHHHHHHhccCC
Q 030935 132 DASIFDLNPNIILGADVFYDASG--KICAFEILICSLFPI 169 (169)
Q Consensus 132 ~~~~~~~~fDlIi~sd~iy~~~~--~~~l~~~l~~~L~p~ 169 (169)
. ++||-|++-..+.+... .+.+|+.+.+.|+|+
T Consensus 135 ~-----e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~ 169 (283)
T COG2230 135 E-----EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPG 169 (283)
T ss_pred c-----cccceeeehhhHHHhCcccHHHHHHHHHhhcCCC
Confidence 2 35999999999998866 999999999999996
No 48
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.42 E-value=1.7e-12 Score=100.10 Aligned_cols=95 Identities=16% Similarity=0.069 Sum_probs=76.0
Q ss_pred CeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCcC
Q 030935 72 ANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVF 149 (169)
Q Consensus 72 ~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~i 149 (169)
++|||+|||+|..+..+++.. .+|+++|++ +++++.+++++...++..++. +...+......+.+||+|++..++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s--~~~~~~a~~~~~~~gl~~~i~-~~~~d~~~~~~~~~fD~I~~~~~l 77 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTIS--PEQAEVGRERIRALGLQGRIR-IFYRDSAKDPFPDTYDLVFGFEVI 77 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECC--HHHHHHHHHHHHhcCCCcceE-EEecccccCCCCCCCCEeehHHHH
Confidence 479999999999999888764 589999999 579999999998877654332 222332222234589999999999
Q ss_pred CCCCChHHHHHHHHHhccCC
Q 030935 150 YDASGKICAFEILICSLFPI 169 (169)
Q Consensus 150 y~~~~~~~l~~~l~~~L~p~ 169 (169)
++..+.+.+++.+.+.|+|+
T Consensus 78 ~~~~~~~~~l~~~~~~Lkpg 97 (224)
T smart00828 78 HHIKDKMDLFSNISRHLKDG 97 (224)
T ss_pred HhCCCHHHHHHHHHHHcCCC
Confidence 99999999999999999996
No 49
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.42 E-value=2.4e-12 Score=99.18 Aligned_cols=97 Identities=22% Similarity=0.152 Sum_probs=72.9
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcC
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGAD 147 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd 147 (169)
..++.+|||+|||+|.++..+++.+.+|+++|++ ++|++.+++++..++....+. +..++.... +.+||+|++++
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s--~~~i~~a~~~~~~~~~~~~i~-~~~~d~~~~--~~~fD~ii~~~ 127 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDIS--EQMVQMARNRAQGRDVAGNVE-FEVNDLLSL--CGEFDIVVCMD 127 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECC--HHHHHHHHHHHHhcCCCCceE-EEECChhhC--CCCcCEEEEhh
Confidence 4567899999999999999999988899999999 569999999987766522211 222332221 26899999999
Q ss_pred cCCCC--CChHHHHHHHHHhccCC
Q 030935 148 VFYDA--SGKICAFEILICSLFPI 169 (169)
Q Consensus 148 ~iy~~--~~~~~l~~~l~~~L~p~ 169 (169)
++++. .....+++.+.+.++|+
T Consensus 128 ~l~~~~~~~~~~~l~~i~~~~~~~ 151 (219)
T TIGR02021 128 VLIHYPASDMAKALGHLASLTKER 151 (219)
T ss_pred HHHhCCHHHHHHHHHHHHHHhCCC
Confidence 98765 34667788888777663
No 50
>PRK08317 hypothetical protein; Provisional
Probab=99.41 E-value=5.5e-12 Score=97.18 Aligned_cols=114 Identities=14% Similarity=-0.001 Sum_probs=84.5
Q ss_pred cchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhC---CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEc
Q 030935 52 WPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTW 128 (169)
Q Consensus 52 W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g---a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~ 128 (169)
||-....-+.+.......++.+|||+|||+|..+..+++.. .+|+++|.+ +.+++.++++.......+.+...+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~--~~~~~~a~~~~~~~~~~~~~~~~d~ 78 (241)
T PRK08317 1 LPDFRRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRS--EAMLALAKERAAGLGPNVEFVRGDA 78 (241)
T ss_pred CchHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCC--HHHHHHHHHHhhCCCCceEEEeccc
Confidence 34445555566666566678899999999999999888753 489999999 5699999887433333333333222
Q ss_pred CCCCcCCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 129 GFLDASIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 129 ~~~~~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.. .+..+.+||+|++..++.+..+...+++.+.+.|+|+
T Consensus 79 ~~--~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~g 117 (241)
T PRK08317 79 DG--LPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPG 117 (241)
T ss_pred cc--CCCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCC
Confidence 22 1233468999999999999999999999999999996
No 51
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.40 E-value=1.6e-11 Score=85.46 Aligned_cols=105 Identities=14% Similarity=0.050 Sum_probs=75.6
Q ss_pred HHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--
Q 030935 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-- 133 (169)
Q Consensus 58 La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~-- 133 (169)
+..++.......++.+|||+|||+|..+..+++.. .+|+++|++ +.+++.+++|++.++... + .+..++...
T Consensus 7 ~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s--~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~~~ 82 (124)
T TIGR02469 7 VRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERN--PEALRLIERNARRFGVSN-I-VIVEGDAPEAL 82 (124)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCC--HHHHHHHHHHHHHhCCCc-e-EEEeccccccC
Confidence 33444444445567799999999999999998863 489999999 569999999998876541 2 233333221
Q ss_pred CCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 134 SIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 134 ~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.....+||+|++.... ...+.+++.+.+.|+|+
T Consensus 83 ~~~~~~~D~v~~~~~~---~~~~~~l~~~~~~Lk~g 115 (124)
T TIGR02469 83 EDSLPEPDRVFIGGSG---GLLQEILEAIWRRLRPG 115 (124)
T ss_pred hhhcCCCCEEEECCcc---hhHHHHHHHHHHHcCCC
Confidence 1123589999986532 45678999999999986
No 52
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.40 E-value=1.6e-11 Score=92.35 Aligned_cols=103 Identities=13% Similarity=0.074 Sum_probs=75.7
Q ss_pred HHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCC
Q 030935 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF 136 (169)
Q Consensus 59 a~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~ 136 (169)
...+.......++.+|||+|||+|.+++.+++.+ .+|+++|.+ +.+++.+++|++.+++. ++. +..++.... .
T Consensus 20 r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s--~~~~~~a~~n~~~~~~~-~i~-~~~~d~~~~-~ 94 (187)
T PRK08287 20 RALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERN--PDALRLIKENRQRFGCG-NID-IIPGEAPIE-L 94 (187)
T ss_pred HHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECC--HHHHHHHHHHHHHhCCC-CeE-EEecCchhh-c
Confidence 3344333344477899999999999999998875 489999999 56999999999888764 222 333443222 2
Q ss_pred CCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 137 DLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 137 ~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+.+||+|++.... ..++.+++.+.+.|+|+
T Consensus 95 ~~~~D~v~~~~~~---~~~~~~l~~~~~~Lk~g 124 (187)
T PRK08287 95 PGKADAIFIGGSG---GNLTAIIDWSLAHLHPG 124 (187)
T ss_pred CcCCCEEEECCCc---cCHHHHHHHHHHhcCCC
Confidence 4589999986543 35788999999999986
No 53
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.39 E-value=5.3e-12 Score=97.15 Aligned_cols=98 Identities=18% Similarity=0.135 Sum_probs=78.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCC-cceEEEEEcCCCCcCCCCCCCcEEEEcC
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNIILGAD 147 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~-~~~~~~l~~~~~~~~~~~~~fDlIi~sd 147 (169)
.++.+|||+|||+|.++..+++.+.+++++|.+ +.+++.+++++..++. .+.+...+..+.... .+.+||+|+++.
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s--~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~i~~~~ 120 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARLGANVTGIDAS--EENIEVAKLHAKKDPLLKIEYRCTSVEDLAEK-GAKSFDVVTCME 120 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCC--HHHHHHHHHHHHHcCCCceEEEeCCHHHhhcC-CCCCccEEEehh
Confidence 457899999999999999998888899999999 5699999999887766 344333332222111 135899999999
Q ss_pred cCCCCCChHHHHHHHHHhccCC
Q 030935 148 VFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 148 ~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
++++..+...+++.+.+.|+|+
T Consensus 121 ~l~~~~~~~~~l~~~~~~L~~g 142 (224)
T TIGR01983 121 VLEHVPDPQAFIRACAQLLKPG 142 (224)
T ss_pred HHHhCCCHHHHHHHHHHhcCCC
Confidence 9999999999999999999985
No 54
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.39 E-value=1.2e-11 Score=99.24 Aligned_cols=97 Identities=19% Similarity=0.067 Sum_probs=70.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcC
Q 030935 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGAD 147 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd 147 (169)
++.+|||+|||+|.+++.+++.. ++|+++|++ +.+++.+++|++.+++..++. +..++......+.+||+|+++.
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis--~~al~~A~~n~~~~~~~~~i~-~~~~D~~~~~~~~~fD~Iv~NP 197 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDIS--PDALAVAEINIERHGLEDRVT-LIQSDLFAALPGRKYDLIVSNP 197 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECC--HHHHHHHHHHHHHcCCCCcEE-EEECchhhccCCCCccEEEECC
Confidence 35689999999999999999864 599999999 569999999999998753322 2333433333344899999875
Q ss_pred cCCCCC-------------------------ChHHHHHHHHHhccCC
Q 030935 148 VFYDAS-------------------------GKICAFEILICSLFPI 169 (169)
Q Consensus 148 ~iy~~~-------------------------~~~~l~~~l~~~L~p~ 169 (169)
+..... .+..+++.+.+.|+|+
T Consensus 198 Py~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~g 244 (284)
T TIGR03533 198 PYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNEN 244 (284)
T ss_pred CCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCC
Confidence 532211 1355677778888885
No 55
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.39 E-value=6.1e-12 Score=100.44 Aligned_cols=115 Identities=16% Similarity=0.150 Sum_probs=78.3
Q ss_pred ecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcC
Q 030935 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWG 129 (169)
Q Consensus 51 ~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~ 129 (169)
.|.+-..-.. +..+...++|++|||||||.|..+.-++..|+ .|+++|-+. ..+.+.+.-.+..+.+..+..+..+
T Consensus 97 EWrSd~KW~r-l~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~--lf~~QF~~i~~~lg~~~~~~~lplg 173 (315)
T PF08003_consen 97 EWRSDWKWDR-LLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSP--LFYLQFEAIKHFLGQDPPVFELPLG 173 (315)
T ss_pred cccccchHHH-HHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCCh--HHHHHHHHHHHHhCCCccEEEcCcc
Confidence 3554433333 33344568999999999999999999999998 699999884 2333322211222222233333222
Q ss_pred CCCcCCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 130 FLDASIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 130 ~~~~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
-...+. ...||+|+|--|+||..+.-..++.|++.|+||
T Consensus 174 vE~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~g 212 (315)
T PF08003_consen 174 VEDLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPG 212 (315)
T ss_pred hhhccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCC
Confidence 111122 458999999999999999999999999999986
No 56
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.39 E-value=5e-13 Score=90.90 Aligned_cols=92 Identities=17% Similarity=0.099 Sum_probs=69.6
Q ss_pred EEEECCCCCHHHHHHHHhC-----CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCc
Q 030935 74 VVELGAGTSLPGLVAAKVG-----SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (169)
Q Consensus 74 vLElGcGtGl~~l~~a~~g-----a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~ 148 (169)
|||+|||+|.....+++.. .+++++|++ ++|++.++++....+.++++...+..+. +....+||+|+++..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s--~~~l~~~~~~~~~~~~~~~~~~~D~~~l--~~~~~~~D~v~~~~~ 76 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDIS--PEMLELAKKRFSEDGPKVRFVQADARDL--PFSDGKFDLVVCSGL 76 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES---HHHHHHHHHHSHHTTTTSEEEESCTTCH--HHHSSSEEEEEE-TT
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECC--HHHHHHHHHhchhcCCceEEEECCHhHC--cccCCCeeEEEEcCC
Confidence 7999999999999998874 699999999 6799999999987777766654444432 223459999999655
Q ss_pred -CCCC--CChHHHHHHHHHhccCC
Q 030935 149 -FYDA--SGKICAFEILICSLFPI 169 (169)
Q Consensus 149 -iy~~--~~~~~l~~~l~~~L~p~ 169 (169)
+++. ...+.+++.+.+.|+|+
T Consensus 77 ~~~~~~~~~~~~ll~~~~~~l~pg 100 (101)
T PF13649_consen 77 SLHHLSPEELEALLRRIARLLRPG 100 (101)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred ccCCCCHHHHHHHHHHHHHHhCCC
Confidence 5544 46789999999999985
No 57
>PRK05785 hypothetical protein; Provisional
Probab=99.39 E-value=6.3e-12 Score=97.61 Aligned_cols=88 Identities=11% Similarity=-0.021 Sum_probs=70.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCc
Q 030935 70 SGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~-ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~ 148 (169)
++.+|||+|||||.++..+++. +.+|+++|.+ ++|++.++.+. .....+... .+..+.+||+|+++..
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S--~~Ml~~a~~~~-------~~~~~d~~~--lp~~d~sfD~v~~~~~ 119 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYA--ENMLKMNLVAD-------DKVVGSFEA--LPFRDKSFDVVMSSFA 119 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCC--HHHHHHHHhcc-------ceEEechhh--CCCCCCCEEEEEecCh
Confidence 3679999999999999999887 5799999999 56999887641 112122222 2445679999999999
Q ss_pred CCCCCChHHHHHHHHHhccC
Q 030935 149 FYDASGKICAFEILICSLFP 168 (169)
Q Consensus 149 iy~~~~~~~l~~~l~~~L~p 168 (169)
+++..+.+.+++.+++.|+|
T Consensus 120 l~~~~d~~~~l~e~~RvLkp 139 (226)
T PRK05785 120 LHASDNIEKVIAEFTRVSRK 139 (226)
T ss_pred hhccCCHHHHHHHHHHHhcC
Confidence 99999999999999999998
No 58
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.38 E-value=5.4e-12 Score=102.39 Aligned_cols=89 Identities=17% Similarity=0.156 Sum_probs=65.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhC------CcceEEEEEcCCCCcCCCCCCCcE
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNK------LNCRVMGLTWGFLDASIFDLNPNI 142 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~------~~~~~~~l~~~~~~~~~~~~~fDl 142 (169)
.++.+|||+|||+|.+++.+++.|.+|+++|++ +.|++.++++.+... ...++.. .+... .+.+||+
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S--~~ml~~A~~~~~~~~~~~~~~~~~~f~~---~Dl~~--l~~~fD~ 215 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALEGAIVSASDIS--AAMVAEAERRAKEALAALPPEVLPKFEA---NDLES--LSGKYDT 215 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHCCCEEEEEECC--HHHHHHHHHHHHhcccccccccceEEEE---cchhh--cCCCcCE
Confidence 467899999999999999999999999999999 569999999987542 1122222 23211 2468999
Q ss_pred EEEcCcCCCCCC--hHHHHHHHHH
Q 030935 143 ILGADVFYDASG--KICAFEILIC 164 (169)
Q Consensus 143 Ii~sd~iy~~~~--~~~l~~~l~~ 164 (169)
|+|.++++|... ...+++.+..
T Consensus 216 Vv~~~vL~H~p~~~~~~ll~~l~~ 239 (315)
T PLN02585 216 VTCLDVLIHYPQDKADGMIAHLAS 239 (315)
T ss_pred EEEcCEEEecCHHHHHHHHHHHHh
Confidence 999999876543 3445666654
No 59
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.38 E-value=1.6e-11 Score=93.91 Aligned_cols=106 Identities=13% Similarity=0.015 Sum_probs=75.0
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCC
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFL 131 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~ 131 (169)
+..+..++.+.....++.+|||+|||+|..+..+++. +.+|+++|++ +++++.+++|++.++...++. +..++.
T Consensus 57 ~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~--~~~~~~a~~~l~~~~~~~~v~-~~~~d~ 133 (205)
T PRK13944 57 APHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIV--KELAIYAAQNIERLGYWGVVE-VYHGDG 133 (205)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCC--HHHHHHHHHHHHHcCCCCcEE-EEECCc
Confidence 3444556665555557789999999999999888875 3589999999 569999999999887653322 333443
Q ss_pred CcCC-CCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 132 DASI-FDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 132 ~~~~-~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.... ...+||+|++...+.+ +.+.+.+.|+|+
T Consensus 134 ~~~~~~~~~fD~Ii~~~~~~~------~~~~l~~~L~~g 166 (205)
T PRK13944 134 KRGLEKHAPFDAIIVTAAAST------IPSALVRQLKDG 166 (205)
T ss_pred ccCCccCCCccEEEEccCcch------hhHHHHHhcCcC
Confidence 3222 2348999998876543 335677888885
No 60
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.38 E-value=1.5e-11 Score=94.99 Aligned_cols=97 Identities=20% Similarity=0.021 Sum_probs=76.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhC---CeEEEEcCCCcHHHHHHHHHHHHHhCCc--ceEEEEEcCCCCcCCCCCCCcEE
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASIFDLNPNII 143 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~g---a~V~~~D~~~~~~~l~~~~~n~~~n~~~--~~~~~l~~~~~~~~~~~~~fDlI 143 (169)
.++.+|||+|||+|..+..+++.+ .+++++|++ +.+++.+++++..++.. ..+...+..+. .....+||+|
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s--~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~I 125 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFS--EGMLAVGREKLRDLGLSGNVEFVQGDAEAL--PFPDNSFDAV 125 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCC--HHHHHHHHHhhcccccccCeEEEecccccC--CCCCCCccEE
Confidence 356899999999999999998876 689999999 46999999998765443 23332332221 2234589999
Q ss_pred EEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 144 LGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 144 i~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+++.++++..+.+.+++.+.+.|+|+
T Consensus 126 ~~~~~l~~~~~~~~~l~~~~~~L~~g 151 (239)
T PRK00216 126 TIAFGLRNVPDIDKALREMYRVLKPG 151 (239)
T ss_pred EEecccccCCCHHHHHHHHHHhccCC
Confidence 99999999999999999999999986
No 61
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.38 E-value=8.9e-13 Score=91.49 Aligned_cols=97 Identities=25% Similarity=0.129 Sum_probs=72.3
Q ss_pred CCeEEEECCCCCHHHHHHHHhC-CeEEEEcCCCcHHHHHHHHHHHHHhCCcce--EEEEEcCCCCcCCCCCCCcEEEEcC
Q 030935 71 GANVVELGAGTSLPGLVAAKVG-SNVTLTDDSNRIEVLKNMRRVCEMNKLNCR--VMGLTWGFLDASIFDLNPNIILGAD 147 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~~g-a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~--~~~l~~~~~~~~~~~~~fDlIi~sd 147 (169)
|.+|||+|||+|.+++.+++.+ .+++++|++ +..++.++.|+..++...+ +...++.+........+||+|+++.
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~--~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~np 78 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDID--PEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNP 78 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESS--HHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEEC--HHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECC
Confidence 4689999999999999999999 799999999 6799999999999887433 3333332222234567999999977
Q ss_pred cCCCCC--------ChHHHHHHHHHhccCC
Q 030935 148 VFYDAS--------GKICAFEILICSLFPI 169 (169)
Q Consensus 148 ~iy~~~--------~~~~l~~~l~~~L~p~ 169 (169)
+..... ....+++.+.+.|+|+
T Consensus 79 P~~~~~~~~~~~~~~~~~~~~~~~~~L~~g 108 (117)
T PF13659_consen 79 PYGPRSGDKAALRRLYSRFLEAAARLLKPG 108 (117)
T ss_dssp STTSBTT----GGCHHHHHHHHHHHHEEEE
T ss_pred CCccccccchhhHHHHHHHHHHHHHHcCCC
Confidence 776431 3467899999999874
No 62
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.38 E-value=1e-11 Score=98.58 Aligned_cols=98 Identities=23% Similarity=0.279 Sum_probs=76.7
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHh-CC--eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc-CCCCCCCcEE
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKV-GS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-SIFDLNPNII 143 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~-ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~-~~~~~~fDlI 143 (169)
..++.+|||+|||+|..++.+++. +. +|+++|.+ +.+++.+++|...++.. ++. +..++... +..+..||+|
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s--~~~l~~A~~~~~~~g~~-~v~-~~~~d~~~l~~~~~~fD~V 150 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMT--PEMLAKARANARKAGYT-NVE-FRLGEIEALPVADNSVDVI 150 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCC--HHHHHHHHHHHHHcCCC-CEE-EEEcchhhCCCCCCceeEE
Confidence 346889999999999998877764 44 79999999 56999999998877663 221 22233322 2334589999
Q ss_pred EEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 144 LGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 144 i~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+++.++++..+.+.+++.+.+.|+|+
T Consensus 151 i~~~v~~~~~d~~~~l~~~~r~LkpG 176 (272)
T PRK11873 151 ISNCVINLSPDKERVFKEAFRVLKPG 176 (272)
T ss_pred EEcCcccCCCCHHHHHHHHHHHcCCC
Confidence 99999999999999999999999996
No 63
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.37 E-value=7.8e-12 Score=104.06 Aligned_cols=100 Identities=19% Similarity=0.160 Sum_probs=76.6
Q ss_pred HHHhccCCCCCCeEEEECCCCCHHHHHHHHh-CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCC
Q 030935 61 YVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLN 139 (169)
Q Consensus 61 ~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~ 139 (169)
++.+.....++.+|||+|||+|.+++.+++. |++|+++|++ +++++.++++++ +..+++...++.+ .+.+
T Consensus 158 ~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS--~~~l~~A~~~~~--~l~v~~~~~D~~~-----l~~~ 228 (383)
T PRK11705 158 LICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTIS--AEQQKLAQERCA--GLPVEIRLQDYRD-----LNGQ 228 (383)
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCC--HHHHHHHHHHhc--cCeEEEEECchhh-----cCCC
Confidence 4444445557889999999999999988875 7799999999 569999998874 3333333222221 1458
Q ss_pred CcEEEEcCcCCCCC--ChHHHHHHHHHhccCC
Q 030935 140 PNIILGADVFYDAS--GKICAFEILICSLFPI 169 (169)
Q Consensus 140 fDlIi~sd~iy~~~--~~~~l~~~l~~~L~p~ 169 (169)
||.|++..++++.. .++.+++.+.+.|+|+
T Consensus 229 fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpG 260 (383)
T PRK11705 229 FDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPD 260 (383)
T ss_pred CCEEEEeCchhhCChHHHHHHHHHHHHHcCCC
Confidence 99999999998874 4688999999999996
No 64
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.36 E-value=1.6e-11 Score=94.51 Aligned_cols=106 Identities=17% Similarity=0.028 Sum_probs=74.5
Q ss_pred hHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC---eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCC
Q 030935 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGF 130 (169)
Q Consensus 54 ~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga---~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~ 130 (169)
.+..+...+.+.....++.+|||+|||+|..+..+++... +|+++|++ +++++.+++|++.+++. ++. +..++
T Consensus 61 ~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~--~~~~~~A~~~~~~~g~~-~v~-~~~~d 136 (215)
T TIGR00080 61 SAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERI--PELAEKAERRLRKLGLD-NVI-VIVGD 136 (215)
T ss_pred chHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCC--HHHHHHHHHHHHHCCCC-CeE-EEECC
Confidence 3344555565555566788999999999999999998754 59999999 56999999999988764 222 22333
Q ss_pred CCcCC-CCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 131 LDASI-FDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 131 ~~~~~-~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
..... ...+||+|++.... +.+.+.+.+.|+|+
T Consensus 137 ~~~~~~~~~~fD~Ii~~~~~------~~~~~~~~~~L~~g 170 (215)
T TIGR00080 137 GTQGWEPLAPYDRIYVTAAG------PKIPEALIDQLKEG 170 (215)
T ss_pred cccCCcccCCCCEEEEcCCc------ccccHHHHHhcCcC
Confidence 32222 23489999986543 23445677888886
No 65
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.36 E-value=1.7e-11 Score=102.32 Aligned_cols=93 Identities=19% Similarity=0.137 Sum_probs=69.1
Q ss_pred cchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcC
Q 030935 52 WPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWG 129 (169)
Q Consensus 52 W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~ 129 (169)
=|.+..+.+.+..... ++.+|||+|||+|.+++.+++. +++|+++|++ +++++.+++|++.++.++++...++.
T Consensus 235 RpeTE~LVe~aL~~l~--~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS--~~ALe~AreNa~~~g~rV~fi~gDl~ 310 (423)
T PRK14966 235 RPETEHLVEAVLARLP--ENGRVWDLGTGSGAVAVTVALERPDAFVRASDIS--PPALETARKNAADLGARVEFAHGSWF 310 (423)
T ss_pred CccHHHHHHHhhhccC--CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECC--HHHHHHHHHHHHHcCCcEEEEEcchh
Confidence 3567788888876542 4569999999999999998875 4589999999 57999999999988876555544443
Q ss_pred CCCcCCCCCCCcEEEEcCcC
Q 030935 130 FLDASIFDLNPNIILGADVF 149 (169)
Q Consensus 130 ~~~~~~~~~~fDlIi~sd~i 149 (169)
.... ....+||+|+|+.+.
T Consensus 311 e~~l-~~~~~FDLIVSNPPY 329 (423)
T PRK14966 311 DTDM-PSEGKWDIIVSNPPY 329 (423)
T ss_pred cccc-ccCCCccEEEECCCC
Confidence 2111 123479999997753
No 66
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.35 E-value=2e-11 Score=96.20 Aligned_cols=94 Identities=14% Similarity=0.015 Sum_probs=65.5
Q ss_pred chHHHHHHHHHhccCC-CCCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcC
Q 030935 53 PCSVILAEYVWQQRYR-FSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWG 129 (169)
Q Consensus 53 ~~~~~La~~l~~~~~~-~~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~ 129 (169)
+.+..|.+.+...... ..+.+|||+|||+|.+++.+++. +.+|+++|++ +.+++.+++|++.|+. ++...++.
T Consensus 68 ~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis--~~al~~A~~N~~~~~~--~~~~~D~~ 143 (251)
T TIGR03704 68 RRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADID--PAAVRCARRNLADAGG--TVHEGDLY 143 (251)
T ss_pred ccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECC--HHHHHHHHHHHHHcCC--EEEEeech
Confidence 4567777777654321 23458999999999999998875 4589999999 5699999999998874 34434443
Q ss_pred CCCcCCCCCCCcEEEEcCcCC
Q 030935 130 FLDASIFDLNPNIILGADVFY 150 (169)
Q Consensus 130 ~~~~~~~~~~fDlIi~sd~iy 150 (169)
+........+||+|+++.+..
T Consensus 144 ~~l~~~~~~~fDlVv~NPPy~ 164 (251)
T TIGR03704 144 DALPTALRGRVDILAANAPYV 164 (251)
T ss_pred hhcchhcCCCEeEEEECCCCC
Confidence 221111134799999866543
No 67
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.35 E-value=1.1e-11 Score=94.50 Aligned_cols=96 Identities=18% Similarity=0.056 Sum_probs=69.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCcCCCCCCCcEEEEc
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASIFDLNPNIILGA 146 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~~~~~~~fDlIi~s 146 (169)
.++.+|||||||+|.+|+.++..++ +|+++|.+ +++++.+++|++.+++. +.+..-++..... ....+||+|++
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~--~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~-~~~~~fDlV~~- 127 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMD--RAVAQQLIKNLATLKAGNARVVNTNALSFLA-QPGTPHNVVFV- 127 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECC--HHHHHHHHHHHHHhCCCcEEEEEchHHHHHh-hcCCCceEEEE-
Confidence 3577999999999999997665554 89999999 56999999999998864 3333333222111 12346999997
Q ss_pred CcCCCCCChHHHHHHHHHh--ccC
Q 030935 147 DVFYDASGKICAFEILICS--LFP 168 (169)
Q Consensus 147 d~iy~~~~~~~l~~~l~~~--L~p 168 (169)
|+-|.....+.+++.|... |+|
T Consensus 128 DPPy~~g~~~~~l~~l~~~~~l~~ 151 (199)
T PRK10909 128 DPPFRKGLLEETINLLEDNGWLAD 151 (199)
T ss_pred CCCCCCChHHHHHHHHHHCCCcCC
Confidence 5558778888888888764 444
No 68
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.35 E-value=2e-11 Score=97.74 Aligned_cols=113 Identities=19% Similarity=0.123 Sum_probs=77.3
Q ss_pred cchHHHHHHHHHhcc-CCCCCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCc--ceEEEE
Q 030935 52 WPCSVILAEYVWQQR-YRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGL 126 (169)
Q Consensus 52 W~~~~~La~~l~~~~-~~~~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~--~~~~~l 126 (169)
-|.+..|.+.+.... ...+..+|||+|||+|.+++.+++.. .+|+++|++ +++++.+++|++.+++. +.+..
T Consensus 95 r~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis--~~al~~a~~n~~~~~~~~~v~~~~- 171 (284)
T TIGR00536 95 RPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDIS--PDALAVAEENAEKNQLEHRVEFIQ- 171 (284)
T ss_pred CCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECC--HHHHHHHHHHHHHcCCCCcEEEEE-
Confidence 355666766665432 11123689999999999999999865 489999999 56999999999998875 33333
Q ss_pred EcCCCCcCCCCCCCcEEEEcCcCCCCC-------------------------ChHHHHHHHHHhccCC
Q 030935 127 TWGFLDASIFDLNPNIILGADVFYDAS-------------------------GKICAFEILICSLFPI 169 (169)
Q Consensus 127 ~~~~~~~~~~~~~fDlIi~sd~iy~~~-------------------------~~~~l~~~l~~~L~p~ 169 (169)
++........+||+|+++.+..... .+..+++...+.|+|+
T Consensus 172 --~d~~~~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~g 237 (284)
T TIGR00536 172 --SNLFEPLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPN 237 (284)
T ss_pred --CchhccCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCC
Confidence 3333333334899999864332211 2445677777788875
No 69
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.35 E-value=2.8e-11 Score=98.00 Aligned_cols=95 Identities=19% Similarity=0.063 Sum_probs=69.8
Q ss_pred CeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCcC
Q 030935 72 ANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVF 149 (169)
Q Consensus 72 ~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~i 149 (169)
.+|||+|||+|.+++.+++.. ++|+++|++ +.+++.+++|++.+++..++. +..++......+.+||+|+++.+.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis--~~al~~A~~n~~~~~l~~~i~-~~~~D~~~~l~~~~fDlIvsNPPy 211 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDIS--PDALAVAEINIERHGLEDRVT-LIESDLFAALPGRRYDLIVSNPPY 211 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCC--HHHHHHHHHHHHHhCCCCcEE-EEECchhhhCCCCCccEEEECCCC
Confidence 689999999999999999864 589999999 569999999999988753322 334443333334589999997543
Q ss_pred CCC-------------------------CChHHHHHHHHHhccCC
Q 030935 150 YDA-------------------------SGKICAFEILICSLFPI 169 (169)
Q Consensus 150 y~~-------------------------~~~~~l~~~l~~~L~p~ 169 (169)
... ..+..+++...+.|+|+
T Consensus 212 i~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pg 256 (307)
T PRK11805 212 VDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTED 256 (307)
T ss_pred CCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCC
Confidence 211 11356788888889886
No 70
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=1.6e-11 Score=91.75 Aligned_cols=77 Identities=25% Similarity=0.231 Sum_probs=61.0
Q ss_pred cCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEE
Q 030935 66 RYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIIL 144 (169)
Q Consensus 66 ~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi 144 (169)
.....|++|+|||||||.+|+.++.+|+ +|+++|++ +++++.+++|+......+.+..-+..+ ...++|.+|
T Consensus 41 ~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD--~~a~ei~r~N~~~l~g~v~f~~~dv~~-----~~~~~dtvi 113 (198)
T COG2263 41 RGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDID--PEALEIARANAEELLGDVEFVVADVSD-----FRGKFDTVI 113 (198)
T ss_pred cCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecC--HHHHHHHHHHHHhhCCceEEEEcchhh-----cCCccceEE
Confidence 4567899999999999999999999998 79999999 679999999999866655544333222 345778888
Q ss_pred EcCcC
Q 030935 145 GADVF 149 (169)
Q Consensus 145 ~sd~i 149 (169)
.+.++
T Consensus 114 mNPPF 118 (198)
T COG2263 114 MNPPF 118 (198)
T ss_pred ECCCC
Confidence 76654
No 71
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.34 E-value=1.6e-11 Score=96.38 Aligned_cols=96 Identities=17% Similarity=0.161 Sum_probs=72.9
Q ss_pred CCCeEEEECCCCCHHHHHHHHh----CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEE
Q 030935 70 SGANVVELGAGTSLPGLVAAKV----GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILG 145 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~----ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~ 145 (169)
++.+|||+|||+|..++.+++. +.+|+++|.+ +.|++.+++++..++...++. +..++... .....+|+|++
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S--~~ml~~A~~~~~~~~~~~~v~-~~~~d~~~-~~~~~~D~vv~ 131 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNS--PAMIERCRRHIDAYKAPTPVD-VIEGDIRD-IAIENASMVVL 131 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCC--HHHHHHHHHHHHhcCCCCCeE-EEeCChhh-CCCCCCCEEeh
Confidence 5679999999999999888762 4699999999 579999999998776643322 22333322 12236899999
Q ss_pred cCcCCCCC--ChHHHHHHHHHhccCC
Q 030935 146 ADVFYDAS--GKICAFEILICSLFPI 169 (169)
Q Consensus 146 sd~iy~~~--~~~~l~~~l~~~L~p~ 169 (169)
+-++++.. ....+++.+.+.|+||
T Consensus 132 ~~~l~~l~~~~~~~~l~~i~~~LkpG 157 (247)
T PRK15451 132 NFTLQFLEPSERQALLDKIYQGLNPG 157 (247)
T ss_pred hhHHHhCCHHHHHHHHHHHHHhcCCC
Confidence 98887664 3468999999999996
No 72
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.32 E-value=5e-12 Score=95.29 Aligned_cols=93 Identities=15% Similarity=0.049 Sum_probs=67.0
Q ss_pred CCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCcCC
Q 030935 71 GANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFY 150 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~iy 150 (169)
-.++||+|||.|.++..+|.++.+++++|++ +.+++.+++.+... ..++ +...+.....++.+||+|+.+.++|
T Consensus 44 y~~alEvGCs~G~lT~~LA~rCd~LlavDis--~~Al~~Ar~Rl~~~-~~V~---~~~~dvp~~~P~~~FDLIV~SEVlY 117 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRCDRLLAVDIS--PRALARARERLAGL-PHVE---WIQADVPEFWPEGRFDLIVLSEVLY 117 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGEEEEEEEES---HHHHHHHHHHTTT--SSEE---EEES-TTT---SS-EEEEEEES-GG
T ss_pred cceeEecCCCccHHHHHHHHhhCceEEEeCC--HHHHHHHHHhcCCC-CCeE---EEECcCCCCCCCCCeeEEEEehHhH
Confidence 3589999999999999999998899999999 56999999888643 2233 3334444455667999999999999
Q ss_pred CCCC---hHHHHHHHHHhccCC
Q 030935 151 DASG---KICAFEILICSLFPI 169 (169)
Q Consensus 151 ~~~~---~~~l~~~l~~~L~p~ 169 (169)
+... +..+++.+.++|+|+
T Consensus 118 YL~~~~~L~~~l~~l~~~L~pg 139 (201)
T PF05401_consen 118 YLDDAEDLRAALDRLVAALAPG 139 (201)
T ss_dssp GSSSHHHHHHHHHHHHHTEEEE
T ss_pred cCCCHHHHHHHHHHHHHHhCCC
Confidence 9976 456888888999885
No 73
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.32 E-value=2.1e-11 Score=94.11 Aligned_cols=94 Identities=19% Similarity=0.088 Sum_probs=72.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCC--eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEc
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~s 146 (169)
.++++|||+|||+|..+..+++.+. +++++|++ +.+++.++.+... ++.+...+..+. +..+.+||+|+++
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~--~~~~~~~~~~~~~---~~~~~~~d~~~~--~~~~~~fD~vi~~ 105 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDIS--AGMLAQAKTKLSE---NVQFICGDAEKL--PLEDSSFDLIVSN 105 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeCh--HHHHHHHHHhcCC---CCeEEecchhhC--CCCCCceeEEEEh
Confidence 3457899999999999999998764 68999999 5688888776542 223332332221 2344689999999
Q ss_pred CcCCCCCChHHHHHHHHHhccCC
Q 030935 147 DVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 147 d~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.++++..+...+++.+.+.|+|+
T Consensus 106 ~~l~~~~~~~~~l~~~~~~L~~~ 128 (240)
T TIGR02072 106 LALQWCDDLSQALSELARVLKPG 128 (240)
T ss_pred hhhhhccCHHHHHHHHHHHcCCC
Confidence 99999999999999999999986
No 74
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.32 E-value=4.3e-11 Score=92.06 Aligned_cols=106 Identities=14% Similarity=0.056 Sum_probs=76.4
Q ss_pred hHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhC---CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCC
Q 030935 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGF 130 (169)
Q Consensus 54 ~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g---a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~ 130 (169)
.+..+..++.+.....++.+|||+|||+|..+..+++.. .+|+++|++ +++++.+++|++.++.. ++ .+..++
T Consensus 60 ~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~--~~~~~~a~~~l~~~g~~-~v-~~~~gd 135 (212)
T PRK13942 60 SAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERI--PELAEKAKKTLKKLGYD-NV-EVIVGD 135 (212)
T ss_pred CcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCC--HHHHHHHHHHHHHcCCC-Ce-EEEECC
Confidence 445566666666566688899999999999999888763 489999999 57999999999988764 12 244455
Q ss_pred CCcCC-CCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 131 LDASI-FDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 131 ~~~~~-~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
..... ...+||+|++...+ +.+.+.+.+.|+|+
T Consensus 136 ~~~~~~~~~~fD~I~~~~~~------~~~~~~l~~~Lkpg 169 (212)
T PRK13942 136 GTLGYEENAPYDRIYVTAAG------PDIPKPLIEQLKDG 169 (212)
T ss_pred cccCCCcCCCcCEEEECCCc------ccchHHHHHhhCCC
Confidence 43322 23589999986544 23345677788886
No 75
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.32 E-value=5.1e-11 Score=93.05 Aligned_cols=114 Identities=18% Similarity=0.080 Sum_probs=82.6
Q ss_pred eecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEE
Q 030935 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGL 126 (169)
Q Consensus 50 ~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l 126 (169)
..+|.+..+.+.+..... ..+.+|||+|||+|.+++.+++. +.+++++|++ +.+++.+++|++.++.. ++ +
T Consensus 68 ~p~~~~~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~--~~~~~~a~~~~~~~~~~~~~---~ 141 (251)
T TIGR03534 68 IPRPDTEELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDIS--PEALAVARKNAARLGLDNVT---F 141 (251)
T ss_pred cCCCChHHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECC--HHHHHHHHHHHHHcCCCeEE---E
Confidence 345777778777776543 24568999999999999999986 4589999999 56999999999988775 33 3
Q ss_pred EcCCCCcCCCCCCCcEEEEcCcCCCCCC--------------------------hHHHHHHHHHhccCC
Q 030935 127 TWGFLDASIFDLNPNIILGADVFYDASG--------------------------KICAFEILICSLFPI 169 (169)
Q Consensus 127 ~~~~~~~~~~~~~fDlIi~sd~iy~~~~--------------------------~~~l~~~l~~~L~p~ 169 (169)
..++........+||+|+++.+.+.... +..+++.+.+.|+|+
T Consensus 142 ~~~d~~~~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~g 210 (251)
T TIGR03534 142 LQSDWFEPLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPG 210 (251)
T ss_pred EECchhccCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccC
Confidence 3344333334568999998766543211 235778888888885
No 76
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.31 E-value=3.9e-11 Score=103.16 Aligned_cols=77 Identities=17% Similarity=0.174 Sum_probs=57.5
Q ss_pred CCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCc
Q 030935 71 GANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~ 148 (169)
+.+|||+|||+|.+++.+++. +++|+++|++ +.+++.+++|++.+++..++. +..++........+||+|+++.+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis--~~al~~A~~N~~~~~l~~~v~-~~~~D~~~~~~~~~fDlIvsNPP 215 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDIS--LDAIEVAKSNAIKYEVTDRIQ-IIHSNWFENIEKQKFDFIVSNPP 215 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECC--HHHHHHHHHHHHHcCCcccee-eeecchhhhCcCCCccEEEECCC
Confidence 458999999999999988875 4599999999 569999999999888753322 23334333333458999998765
Q ss_pred CC
Q 030935 149 FY 150 (169)
Q Consensus 149 iy 150 (169)
..
T Consensus 216 Yi 217 (506)
T PRK01544 216 YI 217 (506)
T ss_pred CC
Confidence 43
No 77
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.31 E-value=7.5e-11 Score=90.45 Aligned_cols=105 Identities=14% Similarity=-0.015 Sum_probs=74.6
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS 134 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~ 134 (169)
...+..++.......++.+|||+|||+|..+..+++.+.+|+++|.+ +++++.+++|++.+++.. ..+..++....
T Consensus 63 ~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~--~~~~~~a~~~~~~~~~~~--v~~~~~d~~~~ 138 (212)
T PRK00312 63 QPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERI--KTLQWEAKRRLKQLGLHN--VSVRHGDGWKG 138 (212)
T ss_pred cHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCC--HHHHHHHHHHHHHCCCCc--eEEEECCcccC
Confidence 34445555555555577899999999999999888887799999999 569999999998877642 12333333222
Q ss_pred CC-CCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 135 IF-DLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 135 ~~-~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.. ..+||+|++...+ ..+.+.+.+.|+|+
T Consensus 139 ~~~~~~fD~I~~~~~~------~~~~~~l~~~L~~g 168 (212)
T PRK00312 139 WPAYAPFDRILVTAAA------PEIPRALLEQLKEG 168 (212)
T ss_pred CCcCCCcCEEEEccCc------hhhhHHHHHhcCCC
Confidence 22 2589999986544 33456677888885
No 78
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.30 E-value=2.2e-11 Score=93.21 Aligned_cols=89 Identities=12% Similarity=0.044 Sum_probs=65.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcC
Q 030935 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGAD 147 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd 147 (169)
++.+|||+|||+|..+..+++. +.+++++|++ +++++.++++.. + ..+... +...+..+.+||+|++..
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS--~~~l~~A~~~~~--~--~~~~~~---d~~~~~~~~sfD~V~~~~ 113 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEIN--EYAVEKAKAYLP--N--INIIQG---SLFDPFKDNFFDLVLTKG 113 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECC--HHHHHHHHhhCC--C--CcEEEe---eccCCCCCCCEEEEEECC
Confidence 5678999999999999998886 5699999999 569999987642 1 222222 322344456999999999
Q ss_pred cCCCCC--ChHHHHHHHHHhcc
Q 030935 148 VFYDAS--GKICAFEILICSLF 167 (169)
Q Consensus 148 ~iy~~~--~~~~l~~~l~~~L~ 167 (169)
++++.. .+..+++.+.+.++
T Consensus 114 vL~hl~p~~~~~~l~el~r~~~ 135 (204)
T TIGR03587 114 VLIHINPDNLPTAYRELYRCSN 135 (204)
T ss_pred hhhhCCHHHHHHHHHHHHhhcC
Confidence 998763 35666676666553
No 79
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.30 E-value=6.5e-11 Score=96.69 Aligned_cols=110 Identities=16% Similarity=0.014 Sum_probs=81.2
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc-
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA- 133 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~- 133 (169)
...|+..|.+.....++.+|||.|||||.+.+.++..+++|+++|++ ++|++.++.|++.+++.. +. +..++...
T Consensus 167 ~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~--~~~~~~a~~nl~~~g~~~-i~-~~~~D~~~l 242 (329)
T TIGR01177 167 DPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDID--WKMVAGARINLEHYGIED-FF-VKRGDATKL 242 (329)
T ss_pred CHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCC--HHHHHHHHHHHHHhCCCC-Ce-EEecchhcC
Confidence 34566666655445578899999999999999999999999999999 569999999999888764 22 22333322
Q ss_pred CCCCCCCcEEEEcCcCCCC----------CChHHHHHHHHHhccCC
Q 030935 134 SIFDLNPNIILGADVFYDA----------SGKICAFEILICSLFPI 169 (169)
Q Consensus 134 ~~~~~~fDlIi~sd~iy~~----------~~~~~l~~~l~~~L~p~ 169 (169)
+....+||+|++.. .|.. ..+..+++.+.+.|+|+
T Consensus 243 ~~~~~~~D~Iv~dP-Pyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~g 287 (329)
T TIGR01177 243 PLSSESVDAIATDP-PYGRSTTAAGDGLESLYERSLEEFHEVLKSE 287 (329)
T ss_pred CcccCCCCEEEECC-CCcCcccccCCchHHHHHHHHHHHHHHccCC
Confidence 23346899999854 4422 12578899999999985
No 80
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.30 E-value=6.4e-11 Score=93.87 Aligned_cols=94 Identities=21% Similarity=0.218 Sum_probs=67.9
Q ss_pred ecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHh-CCcceEEEEE
Q 030935 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMN-KLNCRVMGLT 127 (169)
Q Consensus 51 ~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n-~~~~~~~~l~ 127 (169)
..|.+..+.+.+.......++.+|||+|||+|.+++.+++.. .+|+++|++ +.+++.+++|++.. ...+.+...+
T Consensus 89 pr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis--~~~l~~a~~n~~~~~~~~i~~~~~d 166 (275)
T PRK09328 89 PRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDIS--PEALAVARRNAKHGLGARVEFLQGD 166 (275)
T ss_pred CCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECC--HHHHHHHHHHHHhCCCCcEEEEEcc
Confidence 356677888888755444567799999999999999999875 589999999 56999999999822 2233333333
Q ss_pred cCCCCcCCCCCCCcEEEEcCcC
Q 030935 128 WGFLDASIFDLNPNIILGADVF 149 (169)
Q Consensus 128 ~~~~~~~~~~~~fDlIi~sd~i 149 (169)
+ .......+||+|+++.+.
T Consensus 167 ~---~~~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 167 W---FEPLPGGRFDLIVSNPPY 185 (275)
T ss_pred c---cCcCCCCceeEEEECCCc
Confidence 3 233334689999986554
No 81
>PRK06202 hypothetical protein; Provisional
Probab=99.30 E-value=4.6e-11 Score=92.82 Aligned_cols=94 Identities=10% Similarity=-0.033 Sum_probs=69.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh----C--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcE
Q 030935 69 FSGANVVELGAGTSLPGLVAAKV----G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNI 142 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~----g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDl 142 (169)
.++.+|||||||+|.++..+++. | .+|+++|++ ++|++.++++...+++.. ...+.+... ..+.+||+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s--~~~l~~a~~~~~~~~~~~--~~~~~~~l~--~~~~~fD~ 132 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPD--PRAVAFARANPRRPGVTF--RQAVSDELV--AEGERFDV 132 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCC--HHHHHHHHhccccCCCeE--EEEeccccc--ccCCCccE
Confidence 35679999999999998887752 3 389999999 569999988876555443 223323221 23468999
Q ss_pred EEEcCcCCCCCC--hHHHHHHHHHhccC
Q 030935 143 ILGADVFYDASG--KICAFEILICSLFP 168 (169)
Q Consensus 143 Ii~sd~iy~~~~--~~~l~~~l~~~L~p 168 (169)
|+++.++++..+ ...+++.+.+.++.
T Consensus 133 V~~~~~lhh~~d~~~~~~l~~~~r~~~~ 160 (232)
T PRK06202 133 VTSNHFLHHLDDAEVVRLLADSAALARR 160 (232)
T ss_pred EEECCeeecCChHHHHHHHHHHHHhcCe
Confidence 999999998876 35688888877753
No 82
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.29 E-value=4.3e-11 Score=93.40 Aligned_cols=96 Identities=15% Similarity=0.110 Sum_probs=72.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHh----CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEE
Q 030935 70 SGANVVELGAGTSLPGLVAAKV----GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILG 145 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~----ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~ 145 (169)
++.+|||+|||+|..+..+++. +.+|+++|++ +.|++.++++++..+...++. +..++.... ....+|+|++
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s--~~ml~~a~~~~~~~~~~~~v~-~~~~d~~~~-~~~~~d~v~~ 128 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNS--QPMVERCRQHIAAYHSEIPVE-ILCNDIRHV-EIKNASMVIL 128 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCC--HHHHHHHHHHHHhcCCCCCeE-EEECChhhC-CCCCCCEEee
Confidence 5679999999999999988874 4589999999 569999999987654332221 223343222 1236899999
Q ss_pred cCcCCCCC--ChHHHHHHHHHhccCC
Q 030935 146 ADVFYDAS--GKICAFEILICSLFPI 169 (169)
Q Consensus 146 sd~iy~~~--~~~~l~~~l~~~L~p~ 169 (169)
+.++++.. +...+++.+.+.|+|+
T Consensus 129 ~~~l~~~~~~~~~~~l~~i~~~Lkpg 154 (239)
T TIGR00740 129 NFTLQFLPPEDRIALLTKIYEGLNPN 154 (239)
T ss_pred ecchhhCCHHHHHHHHHHHHHhcCCC
Confidence 99988764 4578999999999996
No 83
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.29 E-value=3.2e-11 Score=102.78 Aligned_cols=100 Identities=22% Similarity=0.092 Sum_probs=72.4
Q ss_pred CCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEc
Q 030935 67 YRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (169)
Q Consensus 67 ~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~s 146 (169)
...++++|||||||+|..+..+++.+.+|+++|++ +.+++.++.... ...++.+...+......+..+.+||+|+++
T Consensus 34 ~~~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s--~~~l~~a~~~~~-~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~ 110 (475)
T PLN02336 34 PPYEGKSVLELGAGIGRFTGELAKKAGQVIALDFI--ESVIKKNESING-HYKNVKFMCADVTSPDLNISDGSVDLIFSN 110 (475)
T ss_pred CccCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCC--HHHHHHHHHHhc-cCCceEEEEecccccccCCCCCCEEEEehh
Confidence 33456799999999999999999998899999999 468876544211 111233333333221223345689999999
Q ss_pred CcCCCCCC--hHHHHHHHHHhccCC
Q 030935 147 DVFYDASG--KICAFEILICSLFPI 169 (169)
Q Consensus 147 d~iy~~~~--~~~l~~~l~~~L~p~ 169 (169)
.++++..+ +..+++.+++.|+|+
T Consensus 111 ~~l~~l~~~~~~~~l~~~~r~Lk~g 135 (475)
T PLN02336 111 WLLMYLSDKEVENLAERMVKWLKVG 135 (475)
T ss_pred hhHHhCCHHHHHHHHHHHHHhcCCC
Confidence 99998765 678999999999986
No 84
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.28 E-value=1.2e-11 Score=100.12 Aligned_cols=103 Identities=19% Similarity=0.190 Sum_probs=74.0
Q ss_pred HHhccCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCC-CCC
Q 030935 62 VWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF-DLN 139 (169)
Q Consensus 62 l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~-~~~ 139 (169)
+.++...++++.|||+|||||++++++|+.|| +|+++|.++ +++.+++.+..|++...+. ...|..++-.. .++
T Consensus 52 i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~---ia~~a~~iv~~N~~~~ii~-vi~gkvEdi~LP~eK 127 (346)
T KOG1499|consen 52 ILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS---IADFARKIVKDNGLEDVIT-VIKGKVEDIELPVEK 127 (346)
T ss_pred HhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH---HHHHHHHHHHhcCccceEE-EeecceEEEecCccc
Confidence 55677789999999999999999999999999 799999984 8899999999999875433 44454433223 479
Q ss_pred CcEEEEcC---cCCCCCChHHHHHHHHHhccC
Q 030935 140 PNIILGAD---VFYDASGKICAFEILICSLFP 168 (169)
Q Consensus 140 fDlIi~sd---~iy~~~~~~~l~~~l~~~L~p 168 (169)
.|+|++-= ++++...++..+-.=-+.|+|
T Consensus 128 VDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~ 159 (346)
T KOG1499|consen 128 VDIIVSEWMGYFLLYESMLDSVLYARDKWLKE 159 (346)
T ss_pred eeEEeehhhhHHHHHhhhhhhhhhhhhhccCC
Confidence 99999632 333444444444333334444
No 85
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.28 E-value=3.6e-11 Score=92.79 Aligned_cols=93 Identities=16% Similarity=0.159 Sum_probs=69.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCc--ceEEEEEcCCCCcCCCCCCCcEEEEc
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASIFDLNPNIILGA 146 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~--~~~~~l~~~~~~~~~~~~~fDlIi~s 146 (169)
.++.+|||+|||+|..+..+++.+.+|+++|++ +.+++.++++....+.. +.+.. ++.. ....+||+|++.
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s--~~~i~~a~~~~~~~~~~~~i~~~~---~d~~--~~~~~fD~v~~~ 134 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGAKVVASDIS--PQMVEEARERAPEAGLAGNITFEV---GDLE--SLLGRFDTVVCL 134 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECC--HHHHHHHHHHHHhcCCccCcEEEE---cCch--hccCCcCEEEEc
Confidence 457799999999999999999988899999999 56999999998776652 33322 2221 224589999999
Q ss_pred CcCCCC--CChHHHHHHHHHhccC
Q 030935 147 DVFYDA--SGKICAFEILICSLFP 168 (169)
Q Consensus 147 d~iy~~--~~~~~l~~~l~~~L~p 168 (169)
+++++. .....+++.+.+.+++
T Consensus 135 ~~l~~~~~~~~~~~l~~l~~~~~~ 158 (230)
T PRK07580 135 DVLIHYPQEDAARMLAHLASLTRG 158 (230)
T ss_pred chhhcCCHHHHHHHHHHHHhhcCC
Confidence 998653 3456677777665543
No 86
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.28 E-value=4.3e-11 Score=90.62 Aligned_cols=94 Identities=14% Similarity=0.085 Sum_probs=69.6
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc---CC-CCCCCcE
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA---SI-FDLNPNI 142 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~---~~-~~~~fDl 142 (169)
..++.+||||+||+|.+|+.++++|+ +|+++|.+ +.+++.+++|++.+++..++. +..++... .. ...+++.
T Consensus 47 ~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~--~~a~~~~~~N~~~~~~~~~~~-~~~~D~~~~l~~~~~~~~~~d 123 (189)
T TIGR00095 47 EIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDD--RKANQTLKENLALLKSGEQAE-VVRNSALRALKFLAKKPTFDN 123 (189)
T ss_pred hcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCC--HHHHHHHHHHHHHhCCcccEE-EEehhHHHHHHHhhccCCCce
Confidence 45789999999999999999999998 89999999 569999999999998753322 22333211 11 1223444
Q ss_pred EEEcCcCCCCCChHHHHHHHHH
Q 030935 143 ILGADVFYDASGKICAFEILIC 164 (169)
Q Consensus 143 Ii~sd~iy~~~~~~~l~~~l~~ 164 (169)
||..|+.|.....+.+++.+.+
T Consensus 124 vv~~DPPy~~~~~~~~l~~l~~ 145 (189)
T TIGR00095 124 VIYLDPPFFNGALQALLELCEN 145 (189)
T ss_pred EEEECcCCCCCcHHHHHHHHHH
Confidence 4556999988788888887755
No 87
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.28 E-value=2.7e-11 Score=92.49 Aligned_cols=98 Identities=14% Similarity=-0.091 Sum_probs=71.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEc-CCCCcCCCCCCCcEEEE
Q 030935 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTW-GFLDASIFDLNPNIILG 145 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~-~~~~~~~~~~~fDlIi~ 145 (169)
.+.+|||+|||+|..+..+++.. .+|+++|++ +.+++.++++++.++.. +.+...++ ........+..||+|++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s--~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVH--EPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEec--hHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEE
Confidence 46799999999999999988763 489999999 46999999999888763 33333333 21111133458999998
Q ss_pred cCcCCCCC--------ChHHHHHHHHHhccCC
Q 030935 146 ADVFYDAS--------GKICAFEILICSLFPI 169 (169)
Q Consensus 146 sd~iy~~~--------~~~~l~~~l~~~L~p~ 169 (169)
.-+..+.. ..+.+++.+.+.|+|+
T Consensus 118 ~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lkpg 149 (202)
T PRK00121 118 NFPDPWPKKRHHKRRLVQPEFLALYARKLKPG 149 (202)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHcCCC
Confidence 64432211 2578999999999996
No 88
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.28 E-value=5.9e-11 Score=97.13 Aligned_cols=94 Identities=16% Similarity=0.060 Sum_probs=73.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcC
Q 030935 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGAD 147 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd 147 (169)
++.+|||||||+|.+++.+++. +.+|+++|.+ +.|++.++++...+++ ++...+..+ .+..+.+||+|+++.
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S--~~mL~~A~~k~~~~~i--~~i~gD~e~--lp~~~~sFDvVIs~~ 186 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQS--PHQLAKAKQKEPLKEC--KIIEGDAED--LPFPTDYADRYVSAG 186 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECC--HHHHHHHHHhhhccCC--eEEeccHHh--CCCCCCceeEEEEcC
Confidence 4679999999999999888774 3589999999 5699999988654433 232222221 123345899999999
Q ss_pred cCCCCCChHHHHHHHHHhccCC
Q 030935 148 VFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 148 ~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
++++..+.+.+++.+.+.|+|+
T Consensus 187 ~L~~~~d~~~~L~e~~rvLkPG 208 (340)
T PLN02490 187 SIEYWPDPQRGIKEAYRVLKIG 208 (340)
T ss_pred hhhhCCCHHHHHHHHHHhcCCC
Confidence 9999999999999999999996
No 89
>PRK06922 hypothetical protein; Provisional
Probab=99.27 E-value=3.1e-11 Score=105.15 Aligned_cols=100 Identities=14% Similarity=0.068 Sum_probs=74.4
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEE
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILG 145 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~ 145 (169)
..++.+|||+|||+|..+..+++. +.+|+++|++ +.|++.++++...++.+..+...+..+....+.+.+||+|++
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS--~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVs 493 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDIS--ENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVY 493 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECC--HHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEE
Confidence 346789999999999998888774 4599999999 569999999877665544433333322211234568999999
Q ss_pred cCcCCCC-------------CChHHHHHHHHHhccCC
Q 030935 146 ADVFYDA-------------SGKICAFEILICSLFPI 169 (169)
Q Consensus 146 sd~iy~~-------------~~~~~l~~~l~~~L~p~ 169 (169)
+.++++. .....+++.+.+.|+||
T Consensus 494 n~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPG 530 (677)
T PRK06922 494 SSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPG 530 (677)
T ss_pred chHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCC
Confidence 8877642 35688999999999996
No 90
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.27 E-value=1.5e-10 Score=88.00 Aligned_cols=99 Identities=14% Similarity=0.061 Sum_probs=72.9
Q ss_pred ccCCCCCCeEEEECCCCCHHHHHHHHh-C--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC--CCCCC
Q 030935 65 QRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS--IFDLN 139 (169)
Q Consensus 65 ~~~~~~~~~vLElGcGtGl~~l~~a~~-g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~--~~~~~ 139 (169)
.....++.+|||+|||+|.+++.+++. + .+|+++|++ +++++.+++|++.+++..++. +..++..+. ....+
T Consensus 35 ~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~--~~~~~~a~~n~~~~g~~~~v~-~~~~d~~~~l~~~~~~ 111 (198)
T PRK00377 35 KLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKD--EKAINLTRRNAEKFGVLNNIV-LIKGEAPEILFTINEK 111 (198)
T ss_pred HcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECC--HHHHHHHHHHHHHhCCCCCeE-EEEechhhhHhhcCCC
Confidence 345567889999999999999998874 3 489999999 569999999999887432222 222333221 12358
Q ss_pred CcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 140 PNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 140 fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
||.|++.- ....+..+++.+.+.|+|+
T Consensus 112 ~D~V~~~~---~~~~~~~~l~~~~~~Lkpg 138 (198)
T PRK00377 112 FDRIFIGG---GSEKLKEIISASWEIIKKG 138 (198)
T ss_pred CCEEEECC---CcccHHHHHHHHHHHcCCC
Confidence 99999843 3456788999999999985
No 91
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=2.5e-11 Score=92.39 Aligned_cols=139 Identities=17% Similarity=0.080 Sum_probs=94.1
Q ss_pred CcceEEEEEeccCCCCCceEEEEeccccCCcceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEE
Q 030935 17 HMTTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVT 96 (169)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~ 96 (169)
.|..+.|+.|..+.- +-.-..++.-..|.-.|=++..+...|.+.....++.+|||+|||+|..+..+|+...+|+
T Consensus 23 A~~~vPRe~FVp~~~----~~~AY~d~~lpi~~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~ 98 (209)
T COG2518 23 AFLAVPRELFVPAAY----KHLAYEDRALPIGCGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVV 98 (209)
T ss_pred HHHhCCHHhccCchh----hcccccCCcccCCCCceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEE
Confidence 355666777754221 1111112212233334445666666677766777899999999999999999999988999
Q ss_pred EEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCC-CCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 97 LTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFD-LNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 97 ~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~-~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.+|.. +++.+.|++|++..+... ....+++-.....+ .+||.|+.+-.. +.+-+.|.+.|+||
T Consensus 99 siEr~--~~L~~~A~~~L~~lg~~n--V~v~~gDG~~G~~~~aPyD~I~Vtaaa------~~vP~~Ll~QL~~g 162 (209)
T COG2518 99 SIERI--EELAEQARRNLETLGYEN--VTVRHGDGSKGWPEEAPYDRIIVTAAA------PEVPEALLDQLKPG 162 (209)
T ss_pred EEEEc--HHHHHHHHHHHHHcCCCc--eEEEECCcccCCCCCCCcCEEEEeecc------CCCCHHHHHhcccC
Confidence 99999 569999999999988853 33566766555554 499999975443 33335566666664
No 92
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.26 E-value=4.8e-11 Score=99.68 Aligned_cols=97 Identities=20% Similarity=0.016 Sum_probs=70.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCC-----CCCCCcEE
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASI-----FDLNPNII 143 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~-----~~~~fDlI 143 (169)
++++|||+|||||.+++.++..|+ +|+++|++ +.+++.+++|++.|++......+..++..... ...+||+|
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s--~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTS--QEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECC--HHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 678999999999999998887777 89999999 56999999999999985211223344433211 13489999
Q ss_pred EEcCcCCCCCC----------hHHHHHHHHHhccCC
Q 030935 144 LGADVFYDASG----------KICAFEILICSLFPI 169 (169)
Q Consensus 144 i~sd~iy~~~~----------~~~l~~~l~~~L~p~ 169 (169)
++ |+.|.... +..+++...+.|+|+
T Consensus 298 il-DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~g 332 (396)
T PRK15128 298 VM-DPPKFVENKSQLMGACRGYKDINMLAIQLLNPG 332 (396)
T ss_pred EE-CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 97 54454433 455566667888875
No 93
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.25 E-value=1.1e-12 Score=100.53 Aligned_cols=108 Identities=19% Similarity=0.123 Sum_probs=75.7
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS 134 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~ 134 (169)
...|++.|.... .-.=+++||||||||+.|..+-.+..+.+++|+|+ .|++.+.+. ++-.....-+...+...
T Consensus 111 P~~l~emI~~~~-~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~--nMl~kA~eK----g~YD~L~~Aea~~Fl~~ 183 (287)
T COG4976 111 PELLAEMIGKAD-LGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISE--NMLAKAHEK----GLYDTLYVAEAVLFLED 183 (287)
T ss_pred HHHHHHHHHhcc-CCccceeeecccCcCcccHhHHHHHhhccCCchhH--HHHHHHHhc----cchHHHHHHHHHHHhhh
Confidence 344555444332 11236899999999999999988888999999995 498877653 22111000000111122
Q ss_pred CCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 135 IFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 135 ~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
..+.+||+|.++||+-+...++.++.....+|+|+
T Consensus 184 ~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~g 218 (287)
T COG4976 184 LTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPG 218 (287)
T ss_pred ccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCC
Confidence 33569999999999999999999999999999986
No 94
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.23 E-value=2.5e-10 Score=87.27 Aligned_cols=96 Identities=23% Similarity=0.157 Sum_probs=74.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCC---eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEE
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILG 145 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~ga---~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~ 145 (169)
.++.+|||+|||+|..+..+++.+. +++++|++ +.+++.++++.. ....+.+...+..+. ...+.+||+|++
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~--~~~~~~~~~~~~-~~~~i~~~~~d~~~~--~~~~~~~D~i~~ 112 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFS--SEMLEVAKKKSE-LPLNIEFIQADAEAL--PFEDNSFDAVTI 112 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECC--HHHHHHHHHHhc-cCCCceEEecchhcC--CCCCCcEEEEEE
Confidence 3678999999999999998887654 89999999 569999888775 222233333322221 223458999999
Q ss_pred cCcCCCCCChHHHHHHHHHhccCC
Q 030935 146 ADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 146 sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+..+++..+...+++.+.+.|+|+
T Consensus 113 ~~~~~~~~~~~~~l~~~~~~L~~g 136 (223)
T TIGR01934 113 AFGLRNVTDIQKALREMYRVLKPG 136 (223)
T ss_pred eeeeCCcccHHHHHHHHHHHcCCC
Confidence 999999999999999999999996
No 95
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.23 E-value=1.6e-10 Score=97.97 Aligned_cols=105 Identities=12% Similarity=-0.033 Sum_probs=76.1
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCc
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDA 133 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~ 133 (169)
+..|.+.+.+.....++.+|||+|||+|.+++.+++.+++|+++|++ +++++.+++|++.+++. +++...++.+...
T Consensus 282 ~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s--~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~ 359 (443)
T PRK13168 282 NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGV--EAMVERARENARRNGLDNVTFYHANLEEDFT 359 (443)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCC--HHHHHHHHHHHHHcCCCceEEEEeChHHhhh
Confidence 56677777765555567899999999999999999998899999999 56999999999998874 4444444332211
Q ss_pred C--CCCCCCcEEEEcCcCCCCCChHHHHHHHHH
Q 030935 134 S--IFDLNPNIILGADVFYDASGKICAFEILIC 164 (169)
Q Consensus 134 ~--~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~ 164 (169)
. ..+.+||+|++ |+-|.- ....++.+.+
T Consensus 360 ~~~~~~~~fD~Vi~-dPPr~g--~~~~~~~l~~ 389 (443)
T PRK13168 360 DQPWALGGFDKVLL-DPPRAG--AAEVMQALAK 389 (443)
T ss_pred hhhhhcCCCCEEEE-CcCCcC--hHHHHHHHHh
Confidence 1 22347999997 666653 3455566655
No 96
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.22 E-value=6.7e-11 Score=105.29 Aligned_cols=98 Identities=20% Similarity=0.074 Sum_probs=72.5
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCC--CCCCCcEEEEc
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASI--FDLNPNIILGA 146 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~--~~~~fDlIi~s 146 (169)
+|++|||||||||.+|+.+++.|+ +|+++|++ +.+++.+++|++.|+++..-..+..++..+.. ...+||+|++.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s--~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMS--NTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID 615 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCC--HHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence 578999999999999999999888 69999999 56999999999999885211223333322211 14589999985
Q ss_pred CcCCCC-----------CChHHHHHHHHHhccCC
Q 030935 147 DVFYDA-----------SGKICAFEILICSLFPI 169 (169)
Q Consensus 147 d~iy~~-----------~~~~~l~~~l~~~L~p~ 169 (169)
.+-+.. ..+..+++.+.+.|+|+
T Consensus 616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~g 649 (702)
T PRK11783 616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPG 649 (702)
T ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCC
Confidence 444321 13567888888889886
No 97
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.20 E-value=4e-10 Score=91.03 Aligned_cols=106 Identities=8% Similarity=-0.003 Sum_probs=78.3
Q ss_pred HHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCC
Q 030935 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF 136 (169)
Q Consensus 59 a~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~ 136 (169)
++.+.+.....++.+|||+|||+|.+++.+++.. .+++++|. +.+++.+++|++..++..++. ...++......
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~---~~~~~~a~~~~~~~gl~~rv~-~~~~d~~~~~~ 213 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL---PGAIDLVNENAAEKGVADRMR-GIAVDIYKESY 213 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec---HHHHHHHHHHHHhCCccceEE-EEecCccCCCC
Confidence 3444444444466799999999999999999875 48999997 359999999999888764433 33344432222
Q ss_pred CCCCcEEEEcCcCCCCCC--hHHHHHHHHHhccCC
Q 030935 137 DLNPNIILGADVFYDASG--KICAFEILICSLFPI 169 (169)
Q Consensus 137 ~~~fDlIi~sd~iy~~~~--~~~l~~~l~~~L~p~ 169 (169)
+ .+|+|+.+.++|+... ...+++.+.++|+||
T Consensus 214 ~-~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pg 247 (306)
T TIGR02716 214 P-EADAVLFCRILYSANEQLSTIMCKKAFDAMRSG 247 (306)
T ss_pred C-CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCC
Confidence 2 4799999999986543 467999999999996
No 98
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.19 E-value=1.8e-10 Score=87.25 Aligned_cols=91 Identities=8% Similarity=-0.054 Sum_probs=67.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCc
Q 030935 70 SGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~-ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~ 148 (169)
++.+|||+|||+|.++..+++. +..++++|++ +++++.++. +++ ++...+..+...+..+.+||+|+++.+
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s--~~~i~~a~~----~~~--~~~~~d~~~~l~~~~~~sfD~Vi~~~~ 84 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEID--QDGVLACVA----RGV--NVIQGDLDEGLEAFPDKSFDYVILSQT 84 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCC--HHHHHHHHH----cCC--eEEEEEhhhcccccCCCCcCEEEEhhH
Confidence 5679999999999999888764 4589999999 468877654 233 333333322111233468999999999
Q ss_pred CCCCCChHHHHHHHHHhccC
Q 030935 149 FYDASGKICAFEILICSLFP 168 (169)
Q Consensus 149 iy~~~~~~~l~~~l~~~L~p 168 (169)
+++..+...+++.+.+.+++
T Consensus 85 l~~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 85 LQATRNPEEILDEMLRVGRH 104 (194)
T ss_pred hHcCcCHHHHHHHHHHhCCe
Confidence 99999999999998887765
No 99
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.18 E-value=2.7e-10 Score=92.60 Aligned_cols=83 Identities=14% Similarity=0.082 Sum_probs=60.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHh-CCcceEEEEEc---CCCCcCC--CCCCCc
Q 030935 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMN-KLNCRVMGLTW---GFLDASI--FDLNPN 141 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n-~~~~~~~~l~~---~~~~~~~--~~~~fD 141 (169)
++.++||||||+|.+...++.. +.+++++|++ +.+++.|++|++.| ++..++..... .+..... ...+||
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId--~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fD 191 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDID--PQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFD 191 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCC--HHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceE
Confidence 4568999999999877766654 5699999999 56999999999999 77654432221 2222221 235899
Q ss_pred EEEEcCcCCCCCC
Q 030935 142 IILGADVFYDASG 154 (169)
Q Consensus 142 lIi~sd~iy~~~~ 154 (169)
+|+|+.++|....
T Consensus 192 livcNPPf~~s~~ 204 (321)
T PRK11727 192 ATLCNPPFHASAA 204 (321)
T ss_pred EEEeCCCCcCcch
Confidence 9999999886543
No 100
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.18 E-value=6e-11 Score=89.36 Aligned_cols=96 Identities=22% Similarity=0.195 Sum_probs=68.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCC--CcCC--CCCCCcEE
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFL--DASI--FDLNPNII 143 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~--~~~~--~~~~fDlI 143 (169)
++|.++|||.||||.+|+.++.+|| +|+++|.+ +..+..+++|++.-+...++..+..+.. .... ...+||+|
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~--~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiI 118 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKN--RKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDII 118 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES---HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECC--HHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEE
Confidence 6899999999999999999999998 89999999 5699999999998887654443433321 1111 34699999
Q ss_pred EEcCcCCCCCCh-HHHHHHHH--Hhcc
Q 030935 144 LGADVFYDASGK-ICAFEILI--CSLF 167 (169)
Q Consensus 144 i~sd~iy~~~~~-~~l~~~l~--~~L~ 167 (169)
+. |+-|..... +.+++.|. ..|+
T Consensus 119 fl-DPPY~~~~~~~~~l~~l~~~~~l~ 144 (183)
T PF03602_consen 119 FL-DPPYAKGLYYEELLELLAENNLLN 144 (183)
T ss_dssp EE---STTSCHHHHHHHHHHHHTTSEE
T ss_pred EE-CCCcccchHHHHHHHHHHHCCCCC
Confidence 96 899988874 88888887 4444
No 101
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.16 E-value=1.1e-09 Score=83.11 Aligned_cols=107 Identities=16% Similarity=0.095 Sum_probs=72.8
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCC
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLD 132 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~ 132 (169)
...+...+.......++.+|||+|||+|.+++.+++. +.+|+++|.+ +++++.+++|++.++.. ++. ...++..
T Consensus 25 ~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s--~~~~~~a~~n~~~~~~~-~v~-~~~~d~~ 100 (196)
T PRK07402 25 KREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERD--EEVVNLIRRNCDRFGVK-NVE-VIEGSAP 100 (196)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCC--HHHHHHHHHHHHHhCCC-CeE-EEECchH
Confidence 3334444444444457789999999999999998875 3589999999 57999999999988764 222 2223221
Q ss_pred cC--CCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 133 AS--IFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 133 ~~--~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.. .....+|.|+.. ....++.+++.+.+.|+|+
T Consensus 101 ~~~~~~~~~~d~v~~~----~~~~~~~~l~~~~~~Lkpg 135 (196)
T PRK07402 101 ECLAQLAPAPDRVCIE----GGRPIKEILQAVWQYLKPG 135 (196)
T ss_pred HHHhhCCCCCCEEEEE----CCcCHHHHHHHHHHhcCCC
Confidence 11 112245666542 2345789999999999996
No 102
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=99.16 E-value=2.2e-10 Score=92.50 Aligned_cols=101 Identities=18% Similarity=0.266 Sum_probs=77.3
Q ss_pred HhccCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCc
Q 030935 63 WQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPN 141 (169)
Q Consensus 63 ~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fD 141 (169)
.++...++++.|||+|||+|+++.++++.|+ +|.+++.++ |.+.++.-++.|++..++. ..-|..++-..+++.|
T Consensus 170 l~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~---MAqyA~~Lv~~N~~~~rIt-VI~GKiEdieLPEk~D 245 (517)
T KOG1500|consen 170 LENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE---MAQYARKLVASNNLADRIT-VIPGKIEDIELPEKVD 245 (517)
T ss_pred HhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhH---HHHHHHHHHhcCCccceEE-EccCccccccCchhcc
Confidence 3455678999999999999999999999998 799999984 9999999999998765543 5567666655678999
Q ss_pred EEEEcCc---CCCCCChHHHHHHHHHhccC
Q 030935 142 IILGADV---FYDASGKICAFEILICSLFP 168 (169)
Q Consensus 142 lIi~sd~---iy~~~~~~~l~~~l~~~L~p 168 (169)
+||+-.. +|+...++.-+-. .+.|+|
T Consensus 246 viISEPMG~mL~NERMLEsYl~A-rk~l~P 274 (517)
T KOG1500|consen 246 VIISEPMGYMLVNERMLESYLHA-RKWLKP 274 (517)
T ss_pred EEEeccchhhhhhHHHHHHHHHH-HhhcCC
Confidence 9998664 4455555553322 266666
No 103
>PRK04266 fibrillarin; Provisional
Probab=99.15 E-value=8.4e-10 Score=85.78 Aligned_cols=113 Identities=14% Similarity=0.029 Sum_probs=72.6
Q ss_pred cceeecch------HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhC
Q 030935 47 YGLFVWPC------SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNK 118 (169)
Q Consensus 47 ~g~~~W~~------~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~ 118 (169)
.+.++|.. +.+|+.+ +.....++.+|||+|||+|..++.+++.. .+|+++|++ +.|++.++++++..
T Consensus 45 ~~~~~~~~~r~~~~~~ll~~~--~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~--~~ml~~l~~~a~~~- 119 (226)
T PRK04266 45 VEYREWNPRRSKLAAAILKGL--KNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFA--PRPMRELLEVAEER- 119 (226)
T ss_pred cEEEEECCCccchHHHHHhhH--hhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECC--HHHHHHHHHHhhhc-
Confidence 34566654 4444444 23445578899999999999999999863 489999999 56998877776543
Q ss_pred CcceEEEEEcCCCCcC----CCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 119 LNCRVMGLTWGFLDAS----IFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 119 ~~~~~~~l~~~~~~~~----~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.++.+. .++...+ ....+||+|++. .- ++.....+++.+.+.||||
T Consensus 120 ~nv~~i---~~D~~~~~~~~~l~~~~D~i~~d-~~-~p~~~~~~L~~~~r~LKpG 169 (226)
T PRK04266 120 KNIIPI---LADARKPERYAHVVEKVDVIYQD-VA-QPNQAEIAIDNAEFFLKDG 169 (226)
T ss_pred CCcEEE---ECCCCCcchhhhccccCCEEEEC-CC-ChhHHHHHHHHHHHhcCCC
Confidence 122222 2222211 113469999853 21 1222345689999999996
No 104
>PHA03412 putative methyltransferase; Provisional
Probab=99.15 E-value=3.6e-10 Score=87.88 Aligned_cols=110 Identities=15% Similarity=0.050 Sum_probs=72.5
Q ss_pred cceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh-----CCeEEEEcCCCcHHHHHHHHHHHHHhCCcc
Q 030935 47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-----GSNVTLTDDSNRIEVLKNMRRVCEMNKLNC 121 (169)
Q Consensus 47 ~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-----ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~ 121 (169)
.|...=|.+ +|+++... ...+.+|||+|||+|.+++.+++. ..+|+++|++ +.+++.+++|... .
T Consensus 30 ~GqFfTP~~--iAr~~~i~--~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID--~~Al~~Ar~n~~~----~ 99 (241)
T PHA03412 30 LGAFFTPIG--LARDFTID--ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELN--HTYYKLGKRIVPE----A 99 (241)
T ss_pred CCccCCCHH--HHHHHHHh--ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECC--HHHHHHHHhhccC----C
Confidence 344444444 44444322 124679999999999999988874 3489999999 5699999988631 2
Q ss_pred eEEEEEcCCCCcCCCCCCCcEEEEcCcCCCCCC------------hHHHHHHHHHhccCC
Q 030935 122 RVMGLTWGFLDASIFDLNPNIILGADVFYDASG------------KICAFEILICSLFPI 169 (169)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~fDlIi~sd~iy~~~~------------~~~l~~~l~~~L~p~ 169 (169)
. +.+++......+.+||+||++.+.+.... ...+++...++++||
T Consensus 100 ~---~~~~D~~~~~~~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G 156 (241)
T PHA03412 100 T---WINADALTTEFDTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQG 156 (241)
T ss_pred E---EEEcchhcccccCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCC
Confidence 2 33344433223458999999988873321 344677777777664
No 105
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.14 E-value=2.6e-10 Score=86.92 Aligned_cols=94 Identities=16% Similarity=0.079 Sum_probs=73.5
Q ss_pred CCCCCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEE
Q 030935 67 YRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIIL 144 (169)
Q Consensus 67 ~~~~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi 144 (169)
+...-.+|.|||||+|..+..++++ ++.++++|.| ++|++.|+.. ..++++.. ++...-..+.+.|+++
T Consensus 27 p~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS--~~Mla~Aa~r----lp~~~f~~---aDl~~w~p~~~~dllf 97 (257)
T COG4106 27 PLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSS--PAMLAKAAQR----LPDATFEE---ADLRTWKPEQPTDLLF 97 (257)
T ss_pred CccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCC--HHHHHHHHHh----CCCCceec---ccHhhcCCCCccchhh
Confidence 3445568999999999999999987 5699999999 6799988553 33444332 2322222334899999
Q ss_pred EcCcCCCCCChHHHHHHHHHhccCC
Q 030935 145 GADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 145 ~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
++-++++..+...++..|...|+||
T Consensus 98 aNAvlqWlpdH~~ll~rL~~~L~Pg 122 (257)
T COG4106 98 ANAVLQWLPDHPELLPRLVSQLAPG 122 (257)
T ss_pred hhhhhhhccccHHHHHHHHHhhCCC
Confidence 9999999999999999999999997
No 106
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.14 E-value=1.2e-09 Score=92.32 Aligned_cols=100 Identities=14% Similarity=-0.057 Sum_probs=70.7
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEE
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILG 145 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~ 145 (169)
..+|.+|||+|||+|..++.+++.+ .+|+++|++ +.+++.+++|++.+++.+.+...+...........+||.|++
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s--~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~ 319 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDID--AQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILL 319 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCC--HHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEE
Confidence 3468899999999999999998865 489999999 569999999999988765433322222111112357999996
Q ss_pred cCcCCCC------------C----------ChHHHHHHHHHhccCC
Q 030935 146 ADVFYDA------------S----------GKICAFEILICSLFPI 169 (169)
Q Consensus 146 sd~iy~~------------~----------~~~~l~~~l~~~L~p~ 169 (169)
.-+.... . ....+++...+.|+||
T Consensus 320 D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpG 365 (427)
T PRK10901 320 DAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPG 365 (427)
T ss_pred CCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4433211 0 1246888888999986
No 107
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.13 E-value=5.4e-10 Score=90.82 Aligned_cols=89 Identities=15% Similarity=-0.006 Sum_probs=64.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCcCC--CCCCCcEEEE
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASI--FDLNPNIILG 145 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~~~--~~~~fDlIi~ 145 (169)
.++.+|||+|||+|.+++.+++.+++|+++|++ +.+++.+++|++.+++. +++. .++..... ...+||+|+.
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s--~~av~~A~~n~~~~~l~~v~~~---~~D~~~~~~~~~~~~D~Vv~ 246 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATPGMQLTGIEIS--AEAIACAKQSAAELGLTNVQFQ---ALDSTQFATAQGEVPDLVLV 246 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCC--HHHHHHHHHHHHHcCCCceEEE---EcCHHHHHHhcCCCCeEEEE
Confidence 356899999999999999999999999999999 56999999999999874 3333 34432211 2247999998
Q ss_pred cCcCCCCCChHHHHHHHHH
Q 030935 146 ADVFYDASGKICAFEILIC 164 (169)
Q Consensus 146 sd~iy~~~~~~~l~~~l~~ 164 (169)
..+ +. .....+.+.|..
T Consensus 247 dPP-r~-G~~~~~~~~l~~ 263 (315)
T PRK03522 247 NPP-RR-GIGKELCDYLSQ 263 (315)
T ss_pred CCC-CC-CccHHHHHHHHH
Confidence 544 32 334455555543
No 108
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.13 E-value=8.5e-10 Score=85.03 Aligned_cols=110 Identities=16% Similarity=-0.033 Sum_probs=73.6
Q ss_pred hHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcce-----------
Q 030935 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCR----------- 122 (169)
Q Consensus 54 ~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~----------- 122 (169)
....|.+++.... ..++.+|||+|||.|.-++.+|.+|.+|+++|++ +.+++.+.. .+++...
T Consensus 19 p~~~l~~~~~~l~-~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S--~~Ai~~~~~---~~~~~~~~~~~~~~~~~~ 92 (213)
T TIGR03840 19 VNPLLVKHWPALG-LPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELS--EIAVEQFFA---ENGLTPTVTQQGEFTRYR 92 (213)
T ss_pred CCHHHHHHHHhhC-CCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCC--HHHHHHHHH---HcCCCcceeccccceeee
Confidence 3556666765532 1256799999999999999999999999999999 458886532 1222100
Q ss_pred --EEEEEcCCCCcCCC--CCCCcEEEEcCcCCCC--CChHHHHHHHHHhccCC
Q 030935 123 --VMGLTWGFLDASIF--DLNPNIILGADVFYDA--SGKICAFEILICSLFPI 169 (169)
Q Consensus 123 --~~~l~~~~~~~~~~--~~~fDlIi~sd~iy~~--~~~~~l~~~l~~~L~p~ 169 (169)
-..+..++...... ..+||.|+-.-++.+. +..+..++.++++|+|+
T Consensus 93 ~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpg 145 (213)
T TIGR03840 93 AGNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPG 145 (213)
T ss_pred cCceEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCC
Confidence 01233344432211 2479999977665533 34466899999999996
No 109
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.12 E-value=1.8e-09 Score=80.77 Aligned_cols=97 Identities=20% Similarity=0.145 Sum_probs=74.6
Q ss_pred ccCCCCCCeEEEECCCCCHHHHHHHHhCC--eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCC-CCc
Q 030935 65 QRYRFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDL-NPN 141 (169)
Q Consensus 65 ~~~~~~~~~vLElGcGtGl~~l~~a~~ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~-~fD 141 (169)
.....+|.+++|+|||||.+++.++..+. +|+++|.+ +++++.+++|++..+.+. +. +.-++..+.+.+. +||
T Consensus 29 ~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~--~~a~~~~~~N~~~fg~~n-~~-vv~g~Ap~~L~~~~~~d 104 (187)
T COG2242 29 KLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERD--EEALELIERNAARFGVDN-LE-VVEGDAPEALPDLPSPD 104 (187)
T ss_pred hhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecC--HHHHHHHHHHHHHhCCCc-EE-EEeccchHhhcCCCCCC
Confidence 34456888999999999999999997654 89999999 569999999999998652 22 3334433333333 689
Q ss_pred EEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 142 IILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 142 lIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.|+-.-- ..++.+++++.+.|+|+
T Consensus 105 aiFIGGg----~~i~~ile~~~~~l~~g 128 (187)
T COG2242 105 AIFIGGG----GNIEEILEAAWERLKPG 128 (187)
T ss_pred EEEECCC----CCHHHHHHHHHHHcCcC
Confidence 8886554 67999999999999986
No 110
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.11 E-value=7.9e-10 Score=91.86 Aligned_cols=92 Identities=14% Similarity=0.010 Sum_probs=67.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCcCC--CCCCCcEEEE
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASI--FDLNPNIILG 145 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~~~--~~~~fDlIi~ 145 (169)
..+.+|||||||+|.+++.++..+.+|+++|++ +.+++.+++|++.|++. ++ +..++..... ...+||+|+.
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~--~~av~~a~~N~~~~~~~~~~---~~~~d~~~~~~~~~~~~D~vi~ 306 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIE--SEAIACAQQSAQMLGLDNLS---FAALDSAKFATAQMSAPELVLV 306 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcCCeEEEEECC--HHHHHHHHHHHHHcCCCcEE---EEECCHHHHHHhcCCCCCEEEE
Confidence 356799999999999999999988899999999 56999999999999874 33 3334432211 1236999997
Q ss_pred cCcCCCCCChHHHHHHHHHhccC
Q 030935 146 ADVFYDASGKICAFEILICSLFP 168 (169)
Q Consensus 146 sd~iy~~~~~~~l~~~l~~~L~p 168 (169)
|+-|. ...+.+++.|.+ ++|
T Consensus 307 -DPPr~-G~~~~~l~~l~~-~~p 326 (374)
T TIGR02085 307 -NPPRR-GIGKELCDYLSQ-MAP 326 (374)
T ss_pred -CCCCC-CCcHHHHHHHHh-cCC
Confidence 56564 555666676654 454
No 111
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.10 E-value=7.5e-10 Score=87.93 Aligned_cols=98 Identities=14% Similarity=0.060 Sum_probs=67.0
Q ss_pred CCCeEEEECCCCCH----HHHHHHHh-------CCeEEEEcCCCcHHHHHHHHHHHH----HhCCc--------------
Q 030935 70 SGANVVELGAGTSL----PGLVAAKV-------GSNVTLTDDSNRIEVLKNMRRVCE----MNKLN-------------- 120 (169)
Q Consensus 70 ~~~~vLElGcGtGl----~~l~~a~~-------ga~V~~~D~~~~~~~l~~~~~n~~----~n~~~-------------- 120 (169)
++.+|||+|||||- +++.+++. +.+|+++|++ +.|++.|++.+. ..+++
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis--~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~ 176 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDID--LKALEKARAGIYPERELEDLPKALLARYFSRVEDK 176 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECC--HHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence 45699999999996 45555553 2489999999 569999988641 11110
Q ss_pred ------c-eEEEEEcCCCCcCC-CCCCCcEEEEcCcCCCCC--ChHHHHHHHHHhccCC
Q 030935 121 ------C-RVMGLTWGFLDASI-FDLNPNIILGADVFYDAS--GKICAFEILICSLFPI 169 (169)
Q Consensus 121 ------~-~~~~l~~~~~~~~~-~~~~fDlIi~sd~iy~~~--~~~~l~~~l~~~L~p~ 169 (169)
. ....+...+..... ...+||+|+|..++++.. ....+++.+++.|+||
T Consensus 177 ~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pG 235 (264)
T smart00138 177 YRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPG 235 (264)
T ss_pred EEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCC
Confidence 0 01123334443322 346899999999887664 4568999999999996
No 112
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=99.10 E-value=3.6e-11 Score=94.94 Aligned_cols=110 Identities=29% Similarity=0.465 Sum_probs=76.6
Q ss_pred CcceeecchHHHHHHHHHhc---cCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHH-----HHHHHHHH
Q 030935 46 EYGLFVWPCSVILAEYVWQQ---RYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLK-----NMRRVCEM 116 (169)
Q Consensus 46 ~~g~~~W~~~~~La~~l~~~---~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~-----~~~~n~~~ 116 (169)
.+|+++|.++..|..++.+. .-.+.+++|||||||+|++++.+.+.|+ .|.+.|++. +.++ ++..|...
T Consensus 89 EGg~k~wecS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na--~vl~~~t~pn~~~~~~~ 166 (282)
T KOG2920|consen 89 EGGLKLWECSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNA--EVLRLVTLPNILVNSHA 166 (282)
T ss_pred ecceEEeecHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecch--hheeeecccceecchhh
Confidence 68999999999999999865 3346899999999999999999999995 899999994 4552 11111111
Q ss_pred h------CCcceEEEE---EcCCCCcCCCCCCCcEEEEcCcCCCCCChHHHH
Q 030935 117 N------KLNCRVMGL---TWGFLDASIFDLNPNIILGADVFYDASGKICAF 159 (169)
Q Consensus 117 n------~~~~~~~~l---~~~~~~~~~~~~~fDlIi~sd~iy~~~~~~~l~ 159 (169)
. .....+..- +|-... ....+||+|+++..+|.....+.+.
T Consensus 167 ~~~~~e~~~~~~i~~s~l~dg~~~~--t~~~~ydlIlsSetiy~~~~~~~~~ 216 (282)
T KOG2920|consen 167 GVEEKENHKVDEILNSLLSDGVFNH--TERTHYDLILSSETIYSIDSLAVLY 216 (282)
T ss_pred hhhhhhcccceeccccccccchhhh--ccccchhhhhhhhhhhCcchhhhhH
Confidence 1 000011111 331110 0113899999999999999998884
No 113
>PLN02672 methionine S-methyltransferase
Probab=99.10 E-value=7.3e-10 Score=101.62 Aligned_cols=95 Identities=20% Similarity=0.073 Sum_probs=69.0
Q ss_pred chHHHHHHHHHhccC-CCCCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCc---------
Q 030935 53 PCSVILAEYVWQQRY-RFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN--------- 120 (169)
Q Consensus 53 ~~~~~La~~l~~~~~-~~~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~--------- 120 (169)
|.+..|++.+...+. .+++++|||||||+|.+++.+++.. ++|+++|++ +++++.+++|++.|+++
T Consensus 100 peTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis--~~Al~~A~~Na~~n~l~~~~~~~~~~ 177 (1082)
T PLN02672 100 DWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDIN--PRAVKVAWINLYLNALDDDGLPVYDG 177 (1082)
T ss_pred hhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECC--HHHHHHHHHHHHHcCccccccccccc
Confidence 567888888544432 2457799999999999999999864 489999999 57999999999988642
Q ss_pred -----ceEEEEEcCCCCcCCCC--CCCcEEEEcCcC
Q 030935 121 -----CRVMGLTWGFLDASIFD--LNPNIILGADVF 149 (169)
Q Consensus 121 -----~~~~~l~~~~~~~~~~~--~~fDlIi~sd~i 149 (169)
.....+..++....... .+||+||++.+.
T Consensus 178 ~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPY 213 (1082)
T PLN02672 178 EGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQ 213 (1082)
T ss_pred ccccccccEEEEECchhhhccccCCceEEEEECCCc
Confidence 01123445555443322 269999997764
No 114
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.09 E-value=6.5e-10 Score=84.32 Aligned_cols=98 Identities=11% Similarity=-0.122 Sum_probs=68.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCcC-CCCCCCcEEEE
Q 030935 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDAS-IFDLNPNIILG 145 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~~-~~~~~fDlIi~ 145 (169)
...++||||||+|.+++.+++.. .+|+++|++ +++++.+++++..+++. +++...+..+.... ..+..+|.|+.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~--~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~ 93 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIH--TPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFL 93 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEee--HHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEE
Confidence 45689999999999999998874 489999999 56999999999887764 33322222211111 22347999987
Q ss_pred cCcCCCCC--------ChHHHHHHHHHhccCC
Q 030935 146 ADVFYDAS--------GKICAFEILICSLFPI 169 (169)
Q Consensus 146 sd~iy~~~--------~~~~l~~~l~~~L~p~ 169 (169)
+-+.-+.. ..+.+++.+++.|+|+
T Consensus 94 ~~pdpw~k~~h~~~r~~~~~~l~~~~r~Lkpg 125 (194)
T TIGR00091 94 NFPDPWPKKRHNKRRITQPHFLKEYANVLKKG 125 (194)
T ss_pred ECCCcCCCCCccccccCCHHHHHHHHHHhCCC
Confidence 63322221 1368999999999996
No 115
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.09 E-value=7.1e-10 Score=86.58 Aligned_cols=105 Identities=11% Similarity=0.004 Sum_probs=74.8
Q ss_pred HHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCC
Q 030935 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASI 135 (169)
Q Consensus 59 a~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~ 135 (169)
++|+.......+.++|||+|||+|..++.+++. +.+|+.+|++ +++++.+++|++.+++..++ .+..++..+.+
T Consensus 57 g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d--~~~~~~A~~n~~~~gl~~~i-~~~~gda~~~L 133 (234)
T PLN02781 57 GLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDID--KEAYEVGLEFIKKAGVDHKI-NFIQSDALSAL 133 (234)
T ss_pred HHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECC--HHHHHHHHHHHHHcCCCCcE-EEEEccHHHHH
Confidence 334333333346789999999999988887763 2499999999 56999999999999986433 24444432211
Q ss_pred -------CCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 136 -------FDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 136 -------~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
...+||+|+. |.- ...+..+++.+.+.|+||
T Consensus 134 ~~l~~~~~~~~fD~Vfi-Da~--k~~y~~~~~~~~~ll~~G 171 (234)
T PLN02781 134 DQLLNNDPKPEFDFAFV-DAD--KPNYVHFHEQLLKLVKVG 171 (234)
T ss_pred HHHHhCCCCCCCCEEEE-CCC--HHHHHHHHHHHHHhcCCC
Confidence 1358999986 432 356778889999999986
No 116
>PLN03075 nicotianamine synthase; Provisional
Probab=99.09 E-value=2.2e-09 Score=86.21 Aligned_cols=97 Identities=18% Similarity=0.081 Sum_probs=70.6
Q ss_pred CCCeEEEECCCCC-HHHHHHHH-h--CCeEEEEcCCCcHHHHHHHHHHHHH-hCCcceEEEEEcCCCCcCC-CCCCCcEE
Q 030935 70 SGANVVELGAGTS-LPGLVAAK-V--GSNVTLTDDSNRIEVLKNMRRVCEM-NKLNCRVMGLTWGFLDASI-FDLNPNII 143 (169)
Q Consensus 70 ~~~~vLElGcGtG-l~~l~~a~-~--ga~V~~~D~~~~~~~l~~~~~n~~~-n~~~~~~~~l~~~~~~~~~-~~~~fDlI 143 (169)
.+++|+|+|||.| +.++.+++ . +.+++++|++ +++++.|++++.. .++..++. +..++..... ...+||+|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d--~~ai~~Ar~~~~~~~gL~~rV~-F~~~Da~~~~~~l~~FDlV 199 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDID--PSANDVARRLVSSDPDLSKRMF-FHTADVMDVTESLKEYDVV 199 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCC--HHHHHHHHHHhhhccCccCCcE-EEECchhhcccccCCcCEE
Confidence 6789999999955 66776664 3 3489999999 6799999999964 55542222 3334432222 23589999
Q ss_pred EEcCcCCCC-CChHHHHHHHHHhccCC
Q 030935 144 LGADVFYDA-SGKICAFEILICSLFPI 169 (169)
Q Consensus 144 i~sd~iy~~-~~~~~l~~~l~~~L~p~ 169 (169)
++.-++|+. +....+++.+++.|+||
T Consensus 200 F~~ALi~~dk~~k~~vL~~l~~~LkPG 226 (296)
T PLN03075 200 FLAALVGMDKEEKVKVIEHLGKHMAPG 226 (296)
T ss_pred EEecccccccccHHHHHHHHHHhcCCC
Confidence 999556653 89999999999999997
No 117
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.08 E-value=2.4e-09 Score=79.36 Aligned_cols=95 Identities=18% Similarity=0.168 Sum_probs=63.8
Q ss_pred HHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC-CCCC
Q 030935 60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS-IFDL 138 (169)
Q Consensus 60 ~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~-~~~~ 138 (169)
+.+.......++.+|||+|||+|.++..+++.+.+|+++|++ +.+++.+++|+..+ .++++. .++.... ....
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~--~~~~~~~~~~~~~~-~~v~ii---~~D~~~~~~~~~ 76 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGALTEELLERAARVTAIEID--PRLAPRLREKFAAA-DNLTVI---HGDALKFDLPKL 76 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccHHHHHHHhcCCeEEEEECC--HHHHHHHHHHhccC-CCEEEE---ECchhcCCcccc
Confidence 344444445567799999999999999999988899999999 46999999988542 123333 2333222 2223
Q ss_pred CCcEEEEcCcCCCCCChHHHHHHHH
Q 030935 139 NPNIILGADVFYDASGKICAFEILI 163 (169)
Q Consensus 139 ~fDlIi~sd~iy~~~~~~~l~~~l~ 163 (169)
+||+|+++ +.|+.. .+++..+.
T Consensus 77 ~~d~vi~n-~Py~~~--~~~i~~~l 98 (169)
T smart00650 77 QPYKVVGN-LPYNIS--TPILFKLL 98 (169)
T ss_pred CCCEEEEC-CCcccH--HHHHHHHH
Confidence 68999974 566542 34444443
No 118
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.07 E-value=3.4e-09 Score=86.34 Aligned_cols=103 Identities=17% Similarity=0.026 Sum_probs=69.8
Q ss_pred HHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC---eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc
Q 030935 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA 133 (169)
Q Consensus 57 ~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga---~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~ 133 (169)
.+..++.+.....++.+|||+|||+|..++.+++... +|+++|.+ +++++.+++|++.++... +. +..++...
T Consensus 67 ~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis--~~~l~~Ar~~l~~~g~~n-V~-~i~gD~~~ 142 (322)
T PRK13943 67 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYS--RKICEIAKRNVRRLGIEN-VI-FVCGDGYY 142 (322)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECC--HHHHHHHHHHHHHcCCCc-EE-EEeCChhh
Confidence 3444454444455778999999999999999988542 69999999 569999999999887742 22 22344322
Q ss_pred CCC-CCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 134 SIF-DLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 134 ~~~-~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
... ..+||+|+++-.+ +.+...+.+.|+|+
T Consensus 143 ~~~~~~~fD~Ii~~~g~------~~ip~~~~~~Lkpg 173 (322)
T PRK13943 143 GVPEFAPYDVIFVTVGV------DEVPETWFTQLKEG 173 (322)
T ss_pred cccccCCccEEEECCch------HHhHHHHHHhcCCC
Confidence 222 2479999986332 23344566778775
No 119
>PHA03411 putative methyltransferase; Provisional
Probab=99.06 E-value=2.7e-09 Score=84.68 Aligned_cols=93 Identities=11% Similarity=0.087 Sum_probs=64.6
Q ss_pred cceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEE
Q 030935 47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVM 124 (169)
Q Consensus 47 ~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~ 124 (169)
.|...=|.+++ ..|+... ....+|||+|||+|.+++.+++. +.+|+++|++ +.+++.+++|.. .+.
T Consensus 45 ~G~FfTP~~i~-~~f~~~~---~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDis--p~al~~Ar~n~~----~v~-- 112 (279)
T PHA03411 45 SGAFFTPEGLA-WDFTIDA---HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELN--PEFARIGKRLLP----EAE-- 112 (279)
T ss_pred ceeEcCCHHHH-HHHHhcc---ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECC--HHHHHHHHHhCc----CCE--
Confidence 56666676653 3454322 23468999999999999988775 4599999999 569999988742 222
Q ss_pred EEEcCCCCcCCCCCCCcEEEEcCcCCCC
Q 030935 125 GLTWGFLDASIFDLNPNIILGADVFYDA 152 (169)
Q Consensus 125 ~l~~~~~~~~~~~~~fDlIi~sd~iy~~ 152 (169)
+..++........+||+|+++.++++.
T Consensus 113 -~v~~D~~e~~~~~kFDlIIsNPPF~~l 139 (279)
T PHA03411 113 -WITSDVFEFESNEKFDVVISNPPFGKI 139 (279)
T ss_pred -EEECchhhhcccCCCcEEEEcCCcccc
Confidence 233444333334589999999888863
No 120
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.03 E-value=2e-09 Score=71.03 Aligned_cols=94 Identities=23% Similarity=0.136 Sum_probs=68.7
Q ss_pred eEEEECCCCCHHHHHHHH-hCCeEEEEcCCCcHHHHHHHHHHHHHhCC-cceEEEEEcCCCCcCCCCCCCcEEEEcCcCC
Q 030935 73 NVVELGAGTSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNIILGADVFY 150 (169)
Q Consensus 73 ~vLElGcGtGl~~l~~a~-~ga~V~~~D~~~~~~~l~~~~~n~~~n~~-~~~~~~l~~~~~~~~~~~~~fDlIi~sd~iy 150 (169)
+++|+|||+|..+..+++ .+.+++++|.++ .++..++++...+.. ..++...++.+... ....+||+|+++.+++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~i~~~~~~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISP--VALELARKAAAALLADNVEVLKGDAEELPP-EADESFDVIISDPPLH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCH--HHHHHHHHHHhcccccceEEEEcChhhhcc-ccCCceEEEEEcccee
Confidence 589999999999998887 445899999994 588877754333322 23333333333211 1345899999999999
Q ss_pred C-CCChHHHHHHHHHhccCC
Q 030935 151 D-ASGKICAFEILICSLFPI 169 (169)
Q Consensus 151 ~-~~~~~~l~~~l~~~L~p~ 169 (169)
+ ......+++.+.+.|+|+
T Consensus 78 ~~~~~~~~~l~~~~~~l~~~ 97 (107)
T cd02440 78 HLVEDLARFLEEARRLLKPG 97 (107)
T ss_pred ehhhHHHHHHHHHHHHcCCC
Confidence 8 889999999999999885
No 121
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.03 E-value=4.9e-09 Score=78.70 Aligned_cols=99 Identities=20% Similarity=0.155 Sum_probs=72.1
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCC--CcCCCC-CCCcEE
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFL--DASIFD-LNPNII 143 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~--~~~~~~-~~fDlI 143 (169)
.+.|.++|||-||+|.+|+.++.+|| +++++|.+ .+.+..+++|++.-+...+...+..... ...... .+||+|
T Consensus 41 ~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~--~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlV 118 (187)
T COG0742 41 EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKD--RKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLV 118 (187)
T ss_pred ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecC--HHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEE
Confidence 37899999999999999999999998 89999999 4699999999988875433333332222 111111 259999
Q ss_pred EEcCcCCCCCChHHHHHHHH----HhccCC
Q 030935 144 LGADVFYDASGKICAFEILI----CSLFPI 169 (169)
Q Consensus 144 i~sd~iy~~~~~~~l~~~l~----~~L~p~ 169 (169)
+. |+-|.....+.....+. ..|+|+
T Consensus 119 fl-DPPy~~~l~~~~~~~~~~~~~~~L~~~ 147 (187)
T COG0742 119 FL-DPPYAKGLLDKELALLLLEENGWLKPG 147 (187)
T ss_pred Ee-CCCCccchhhHHHHHHHHHhcCCcCCC
Confidence 96 99999777755555554 446653
No 122
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.02 E-value=3.7e-09 Score=87.74 Aligned_cols=98 Identities=12% Similarity=-0.022 Sum_probs=72.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCcCCCCCCCcEEEEc
Q 030935 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASIFDLNPNIILGA 146 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~~~~~~~fDlIi~s 146 (169)
.+..+||||||+|...+.+|+.. ..++++|++ +.+++.+.+++..+++. +.+...+.......+.+..+|.|+..
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~--~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~ln 199 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIH--TPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVH 199 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECC--HHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEe
Confidence 45689999999999999999874 489999999 56999999999888774 33333333222233455689999976
Q ss_pred CcCCCCCC------hHHHHHHHHHhccCC
Q 030935 147 DVFYDASG------KICAFEILICSLFPI 169 (169)
Q Consensus 147 d~iy~~~~------~~~l~~~l~~~L~p~ 169 (169)
-+..|... .+.+++.+++.|+||
T Consensus 200 FPdPW~KkrHRRlv~~~fL~e~~RvLkpG 228 (390)
T PRK14121 200 FPVPWDKKPHRRVISEDFLNEALRVLKPG 228 (390)
T ss_pred CCCCccccchhhccHHHHHHHHHHHcCCC
Confidence 44333322 278999999999986
No 123
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.02 E-value=3.2e-09 Score=82.10 Aligned_cols=109 Identities=17% Similarity=0.015 Sum_probs=72.8
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcc-------------
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNC------------- 121 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~------------- 121 (169)
...|.+|+.... ..++.+||++|||.|.-++.+|.+|.+|+++|++ +.+++.+.. .+++..
T Consensus 23 ~~~L~~~~~~~~-~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s--~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~ 96 (218)
T PRK13255 23 NPLLQKYWPALA-LPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELS--ELAVEQFFA---ENGLTPQTRQSGEFEHYQA 96 (218)
T ss_pred CHHHHHHHHhhC-CCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccC--HHHHHHHHH---HcCCCcccccccccccccc
Confidence 445555664322 2256799999999999999999999999999999 458886532 222211
Q ss_pred eEEEEEcCCCCcCCC--CCCCcEEEEcCcCCCC--CChHHHHHHHHHhccCC
Q 030935 122 RVMGLTWGFLDASIF--DLNPNIILGADVFYDA--SGKICAFEILICSLFPI 169 (169)
Q Consensus 122 ~~~~l~~~~~~~~~~--~~~fDlIi~sd~iy~~--~~~~~l~~~l~~~L~p~ 169 (169)
.-..+..++...... ...||+|+-.-++.+. +..+..++.++++|+|+
T Consensus 97 ~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pg 148 (218)
T PRK13255 97 GEITIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAG 148 (218)
T ss_pred CceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCC
Confidence 011233344433211 1378999977765533 44577899999999996
No 124
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.01 E-value=6.3e-09 Score=81.21 Aligned_cols=116 Identities=15% Similarity=-0.017 Sum_probs=88.6
Q ss_pred CcceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh--------CCeEEEEcCCCcHHHHHHHHHHHHHh
Q 030935 46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--------GSNVTLTDDSNRIEVLKNMRRVCEMN 117 (169)
Q Consensus 46 ~~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~--------ga~V~~~D~~~~~~~l~~~~~n~~~n 117 (169)
..++++|.. +........++.++||++||||-++.-+.+. +.+|++.|++ |.||..+++..+..
T Consensus 82 lGiHRlWKd------~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Din--p~mL~vgkqRa~~~ 153 (296)
T KOG1540|consen 82 LGIHRLWKD------MFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDIN--PHMLAVGKQRAKKR 153 (296)
T ss_pred cchhHHHHH------HhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCC--HHHHHHHHHHHhhc
Confidence 567888865 3344445667889999999999999877663 2589999999 67999999988776
Q ss_pred CCcce-EEEEEcCCCC-cCCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 118 KLNCR-VMGLTWGFLD-ASIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 118 ~~~~~-~~~l~~~~~~-~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
++... ......++.+ .++.+..||....+-=|-+..+++..++...+.||||
T Consensus 154 ~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpG 207 (296)
T KOG1540|consen 154 PLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPG 207 (296)
T ss_pred CCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCC
Confidence 65432 1222233332 2455679999999999999999999999999999997
No 125
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.01 E-value=3.9e-09 Score=89.13 Aligned_cols=106 Identities=18% Similarity=0.116 Sum_probs=73.4
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCc
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDA 133 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~ 133 (169)
+..|.+.+.+.....++.+|||+|||+|.+++.+++.+.+|+++|++ +.+++.+++|++.|++. ++ +..++...
T Consensus 277 ~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~--~~av~~a~~n~~~~~~~nv~---~~~~d~~~ 351 (431)
T TIGR00479 277 NEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVV--PESVEKAQQNAELNGIANVE---FLAGTLET 351 (431)
T ss_pred HHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcC--HHHHHHHHHHHHHhCCCceE---EEeCCHHH
Confidence 44455555544444456799999999999999999988899999999 56999999999999874 33 33344322
Q ss_pred C-----CCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccC
Q 030935 134 S-----IFDLNPNIILGADVFYDASGKICAFEILICSLFP 168 (169)
Q Consensus 134 ~-----~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p 168 (169)
. ....+||+|+. |+-+. .....+++.+.+ ++|
T Consensus 352 ~l~~~~~~~~~~D~vi~-dPPr~-G~~~~~l~~l~~-l~~ 388 (431)
T TIGR00479 352 VLPKQPWAGQIPDVLLL-DPPRK-GCAAEVLRTIIE-LKP 388 (431)
T ss_pred HHHHHHhcCCCCCEEEE-CcCCC-CCCHHHHHHHHh-cCC
Confidence 1 11347999996 44442 445666666554 444
No 126
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.00 E-value=4.4e-09 Score=85.00 Aligned_cols=97 Identities=14% Similarity=0.069 Sum_probs=66.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC--CCCC---CCc
Q 030935 70 SGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS--IFDL---NPN 141 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~--~~~~---~fD 141 (169)
++.+|||||||||..+..+++. +.+|+++|+| ++|++.+++++.......++. ..+++.... .... ...
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS--~~mL~~a~~~l~~~~p~~~v~-~i~gD~~~~~~~~~~~~~~~~ 139 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDIS--ADALKESAAALAADYPQLEVH-GICADFTQPLALPPEPAAGRR 139 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECC--HHHHHHHHHHHHhhCCCceEE-EEEEcccchhhhhcccccCCe
Confidence 5678999999999999988876 4689999999 569999999887644333322 233444321 1111 123
Q ss_pred -EEEEcCcCCCCC--ChHHHHHHHHHhccCC
Q 030935 142 -IILGADVFYDAS--GKICAFEILICSLFPI 169 (169)
Q Consensus 142 -lIi~sd~iy~~~--~~~~l~~~l~~~L~p~ 169 (169)
++++.-.+++.. ....+++.+.+.|+|+
T Consensus 140 ~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pg 170 (301)
T TIGR03438 140 LGFFPGSTIGNFTPEEAVAFLRRIRQLLGPG 170 (301)
T ss_pred EEEEecccccCCCHHHHHHHHHHHHHhcCCC
Confidence 344444666553 4667999999999996
No 127
>PRK04148 hypothetical protein; Provisional
Probab=98.99 E-value=3.2e-09 Score=75.84 Aligned_cols=92 Identities=17% Similarity=0.218 Sum_probs=61.1
Q ss_pred HHHHHHHhccCCCCCCeEEEECCCCCH-HHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCC
Q 030935 57 ILAEYVWQQRYRFSGANVVELGAGTSL-PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASI 135 (169)
Q Consensus 57 ~La~~l~~~~~~~~~~~vLElGcGtGl-~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~ 135 (169)
.+++|+.++....+++++||+|||+|. ++..+++.|.+|+++|+++ ..++.++++ +. .+.. ++...+
T Consensus 3 ~i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~--~aV~~a~~~----~~--~~v~---dDlf~p- 70 (134)
T PRK04148 3 TIAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINE--KAVEKAKKL----GL--NAFV---DDLFNP- 70 (134)
T ss_pred HHHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCH--HHHHHHHHh----CC--eEEE---CcCCCC-
Confidence 478888877655577899999999997 9999999999999999994 577776654 33 2222 333222
Q ss_pred CCCCCcEEEEcCcCCCCCChHHHHHHHH
Q 030935 136 FDLNPNIILGADVFYDASGKICAFEILI 163 (169)
Q Consensus 136 ~~~~fDlIi~sd~iy~~~~~~~l~~~l~ 163 (169)
.+++-=.+|++|.....+++...+.
T Consensus 71 ---~~~~y~~a~liysirpp~el~~~~~ 95 (134)
T PRK04148 71 ---NLEIYKNAKLIYSIRPPRDLQPFIL 95 (134)
T ss_pred ---CHHHHhcCCEEEEeCCCHHHHHHHH
Confidence 3333334555565555555544443
No 128
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.98 E-value=3.4e-09 Score=81.43 Aligned_cols=106 Identities=17% Similarity=0.129 Sum_probs=69.5
Q ss_pred hHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh-CC--eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCC
Q 030935 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGF 130 (169)
Q Consensus 54 ~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~ 130 (169)
++..+...+++.....+|.+|||+|||||..+..+++. |. +|+.+|.+ +.+++.+++|++..+... +. +..++
T Consensus 56 s~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~--~~l~~~A~~~l~~~~~~n-v~-~~~gd 131 (209)
T PF01135_consen 56 SAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERD--PELAERARRNLARLGIDN-VE-VVVGD 131 (209)
T ss_dssp --HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESB--HHHHHHHHHHHHHHTTHS-EE-EEES-
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECcc--HHHHHHHHHHHHHhccCc-ee-EEEcc
Confidence 44555556666666778999999999999999999886 43 69999999 579999999999888752 22 33344
Q ss_pred CCcCCC-CCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 131 LDASIF-DLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 131 ~~~~~~-~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
...... ..+||.|+..-.+. .+-..|.+.|+||
T Consensus 132 g~~g~~~~apfD~I~v~~a~~------~ip~~l~~qL~~g 165 (209)
T PF01135_consen 132 GSEGWPEEAPFDRIIVTAAVP------EIPEALLEQLKPG 165 (209)
T ss_dssp GGGTTGGG-SEEEEEESSBBS------S--HHHHHTEEEE
T ss_pred hhhccccCCCcCEEEEeeccc------hHHHHHHHhcCCC
Confidence 333332 24899999876553 2224455566653
No 129
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.98 E-value=1.2e-08 Score=86.14 Aligned_cols=110 Identities=11% Similarity=-0.039 Sum_probs=76.2
Q ss_pred chHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh-C-CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCC
Q 030935 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGF 130 (169)
Q Consensus 53 ~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-g-a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~ 130 (169)
.++..++.++ ...+|.+|||+|||+|..++.+++. + ++|+++|++ +.+++.+++|++.+++.+.+.... ++
T Consensus 225 ~~s~~~~~~L----~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~--~~~l~~~~~n~~r~g~~~~v~~~~-~d 297 (426)
T TIGR00563 225 ASAQWVATWL----APQNEETILDACAAPGGKTTHILELAPQAQVVALDIH--EHRLKRVYENLKRLGLTIKAETKD-GD 297 (426)
T ss_pred HHHHHHHHHh----CCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCC--HHHHHHHHHHHHHcCCCeEEEEec-cc
Confidence 3455555555 2346789999999999999998875 3 599999999 569999999999998874432222 32
Q ss_pred CCcCC---CCCCCcEEEEc------CcCCCCCC----------------hHHHHHHHHHhccCC
Q 030935 131 LDASI---FDLNPNIILGA------DVFYDASG----------------KICAFEILICSLFPI 169 (169)
Q Consensus 131 ~~~~~---~~~~fDlIi~s------d~iy~~~~----------------~~~l~~~l~~~L~p~ 169 (169)
..... ...+||.|++- .++...+. ...++....+.|+||
T Consensus 298 ~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkpg 361 (426)
T TIGR00563 298 GRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTG 361 (426)
T ss_pred cccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 22111 23579999952 23332222 357888889999986
No 130
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.98 E-value=6.6e-09 Score=79.82 Aligned_cols=90 Identities=14% Similarity=-0.022 Sum_probs=60.6
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhC---CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCC------cCCCCC
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLD------ASIFDL 138 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~g---a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~------~~~~~~ 138 (169)
..++.+|||||||+|..+..+++.. .+|+++|+++ |.. .. ++.+...+..+.. ......
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~---~~~-------~~--~v~~i~~D~~~~~~~~~i~~~~~~~ 116 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP---MDP-------IV--GVDFLQGDFRDELVLKALLERVGDS 116 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc---ccC-------CC--CcEEEecCCCChHHHHHHHHHhCCC
Confidence 3467899999999999999888863 3899999984 210 11 2333333333321 013345
Q ss_pred CCcEEEEcCcCCCCCC-----------hHHHHHHHHHhccCC
Q 030935 139 NPNIILGADVFYDASG-----------KICAFEILICSLFPI 169 (169)
Q Consensus 139 ~fDlIi~sd~iy~~~~-----------~~~l~~~l~~~L~p~ 169 (169)
+||+|+++...+.... .+.+++.+.+.|+||
T Consensus 117 ~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpG 158 (209)
T PRK11188 117 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPG 158 (209)
T ss_pred CCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 8999999766665432 246889999999986
No 131
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.97 E-value=1.3e-08 Score=86.43 Aligned_cols=97 Identities=14% Similarity=-0.047 Sum_probs=69.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC--CCCCCCcEE
Q 030935 69 FSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS--IFDLNPNII 143 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~--~~~~~fDlI 143 (169)
.++.+|||+|||+|..++.+++. ..+|+++|++ +.+++.+++|++.+++.. + .+..++.... ....+||+|
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~--~~~l~~~~~n~~~~g~~~-v-~~~~~D~~~~~~~~~~~fD~V 324 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIH--EHKLKLIEENAKRLGLTN-I-ETKALDARKVHEKFAEKFDKI 324 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCC--HHHHHHHHHHHHHcCCCe-E-EEEeCCcccccchhcccCCEE
Confidence 46789999999999999998875 3489999999 569999999999988753 2 2333333221 122589999
Q ss_pred EEcCcCCCCCC----------------------hHHHHHHHHHhccCC
Q 030935 144 LGADVFYDASG----------------------KICAFEILICSLFPI 169 (169)
Q Consensus 144 i~sd~iy~~~~----------------------~~~l~~~l~~~L~p~ 169 (169)
++.-+.+.... ...+++...+.|+||
T Consensus 325 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG 372 (444)
T PRK14902 325 LVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKG 372 (444)
T ss_pred EEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 97544332111 245788888899986
No 132
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.95 E-value=5.2e-09 Score=86.62 Aligned_cols=105 Identities=14% Similarity=0.078 Sum_probs=73.4
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCc
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDA 133 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~ 133 (169)
+..|.+++.+.... .+.+||||+||+|.+|+.+++...+|+++|.+ +.+++.+++|++.|++. +++...+..+...
T Consensus 192 ~e~l~~~v~~~~~~-~~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~--~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~ 268 (362)
T PRK05031 192 NEKMLEWALDATKG-SKGDLLELYCGNGNFTLALARNFRRVLATEIS--KPSVAAAQYNIAANGIDNVQIIRMSAEEFTQ 268 (362)
T ss_pred HHHHHHHHHHHhhc-CCCeEEEEeccccHHHHHHHhhCCEEEEEECC--HHHHHHHHHHHHHhCCCcEEEEECCHHHHHH
Confidence 56666666654322 23579999999999999888887799999999 56999999999999874 3343333322111
Q ss_pred CCC--------------CCCCcEEEEcCcCCCCCChHHHHHHHHH
Q 030935 134 SIF--------------DLNPNIILGADVFYDASGKICAFEILIC 164 (169)
Q Consensus 134 ~~~--------------~~~fDlIi~sd~iy~~~~~~~l~~~l~~ 164 (169)
... ..+||+|+. |+-+ ....+.+++.|.+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~D~v~l-DPPR-~G~~~~~l~~l~~ 311 (362)
T PRK05031 269 AMNGVREFNRLKGIDLKSYNFSTIFV-DPPR-AGLDDETLKLVQA 311 (362)
T ss_pred HHhhcccccccccccccCCCCCEEEE-CCCC-CCCcHHHHHHHHc
Confidence 110 125899997 6666 4666777777754
No 133
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.95 E-value=2.4e-09 Score=80.60 Aligned_cols=88 Identities=10% Similarity=-0.002 Sum_probs=67.1
Q ss_pred CCCeEEEECCCCCHHHHHHHH-hCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCc
Q 030935 70 SGANVVELGAGTSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~-~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~ 148 (169)
+|.+|||||||.|.+-..+.. ++.+..++|+++ +.+..+ -.+|++ +.+.+..+....+.+.+||+||.+.+
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~--~~v~~c----v~rGv~--Viq~Dld~gL~~f~d~sFD~VIlsqt 84 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDP--DNVAAC----VARGVS--VIQGDLDEGLADFPDQSFDYVILSQT 84 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCH--HHHHHH----HHcCCC--EEECCHHHhHhhCCCCCccEEehHhH
Confidence 678999999999988777766 677999999994 344433 335665 45555555445566789999999999
Q ss_pred CCCCCChHHHHHHHHHh
Q 030935 149 FYDASGKICAFEILICS 165 (169)
Q Consensus 149 iy~~~~~~~l~~~l~~~ 165 (169)
+.....++.+++.+.+.
T Consensus 85 LQ~~~~P~~vL~EmlRV 101 (193)
T PF07021_consen 85 LQAVRRPDEVLEEMLRV 101 (193)
T ss_pred HHhHhHHHHHHHHHHHh
Confidence 99999988888777654
No 134
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.94 E-value=2.7e-09 Score=82.95 Aligned_cols=62 Identities=21% Similarity=0.130 Sum_probs=51.9
Q ss_pred eecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHH-HHHHH
Q 030935 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLK-NMRRV 113 (169)
Q Consensus 50 ~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~-~~~~n 113 (169)
.++.++..|...+......+++++|||+|||||.++..+++.|+ +|+++|.++ .++. ..+.+
T Consensus 55 ~vsr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~--~~l~~~l~~~ 118 (228)
T TIGR00478 55 FVSRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGY--NQLAEKLRQD 118 (228)
T ss_pred hhhhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCH--HHHHHHHhcC
Confidence 66888999999998876667899999999999999999999987 799999995 3554 34443
No 135
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=2.1e-08 Score=78.27 Aligned_cols=100 Identities=21% Similarity=0.166 Sum_probs=79.5
Q ss_pred HHhccCCCCCCeEEEECCCCCHHHHHHHHh-CC--eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCC
Q 030935 62 VWQQRYRFSGANVVELGAGTSLPGLVAAKV-GS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDL 138 (169)
Q Consensus 62 l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~ 138 (169)
+.......+|.+|||.|.|+|.++.++|.. |. +|+..|+. ++.++.|++|++..++...+. +.-++..+...+.
T Consensus 86 I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r--~d~~k~A~~Nl~~~~l~d~v~-~~~~Dv~~~~~~~ 162 (256)
T COG2519 86 IVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIR--EDFAKTARENLSEFGLGDRVT-LKLGDVREGIDEE 162 (256)
T ss_pred HHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEec--HHHHHHHHHHHHHhccccceE-EEecccccccccc
Confidence 333445678999999999999999999973 43 89999999 569999999999887765433 3347776666666
Q ss_pred CCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 139 NPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 139 ~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.||.|+. +..++-..++.++.+|+|+
T Consensus 163 ~vDav~L-----Dmp~PW~~le~~~~~Lkpg 188 (256)
T COG2519 163 DVDAVFL-----DLPDPWNVLEHVSDALKPG 188 (256)
T ss_pred ccCEEEE-----cCCChHHHHHHHHHHhCCC
Confidence 9999886 4567888999999999996
No 136
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.94 E-value=8.3e-09 Score=83.16 Aligned_cols=92 Identities=12% Similarity=0.103 Sum_probs=65.4
Q ss_pred HHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCC
Q 030935 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFD 137 (169)
Q Consensus 58 La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~ 137 (169)
+++.+.......++.+|||+|||+|.++..+++.+.+|+++|++ +++++.+++++..++...++. +..++..... .
T Consensus 24 i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD--~~li~~l~~~~~~~~~~~~v~-ii~~Dal~~~-~ 99 (294)
T PTZ00338 24 VLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEID--PRMVAELKKRFQNSPLASKLE-VIEGDALKTE-F 99 (294)
T ss_pred HHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECC--HHHHHHHHHHHHhcCCCCcEE-EEECCHhhhc-c
Confidence 44455555555678899999999999999999988899999999 569999999988765332222 3444443221 2
Q ss_pred CCCcEEEEcCcCCCCCC
Q 030935 138 LNPNIILGADVFYDASG 154 (169)
Q Consensus 138 ~~fDlIi~sd~iy~~~~ 154 (169)
.+||.|++ .+-|+...
T Consensus 100 ~~~d~Vva-NlPY~Ist 115 (294)
T PTZ00338 100 PYFDVCVA-NVPYQISS 115 (294)
T ss_pred cccCEEEe-cCCcccCc
Confidence 36898886 55565543
No 137
>PLN02476 O-methyltransferase
Probab=98.94 E-value=6.7e-09 Score=82.85 Aligned_cols=96 Identities=18% Similarity=0.193 Sum_probs=74.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCC-------CC
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASI-------FD 137 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~-------~~ 137 (169)
..+.++|||+|+|+|..++.+|+. +.+|+.+|.+ ++.++.|++|++.+++..++ .+..|+..+.+ ..
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d--~e~~~~Ar~n~~~aGl~~~I-~li~GdA~e~L~~l~~~~~~ 192 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERD--SNSLEVAKRYYELAGVSHKV-NVKHGLAAESLKSMIQNGEG 192 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECC--HHHHHHHHHHHHHcCCCCcE-EEEEcCHHHHHHHHHhcccC
Confidence 346789999999999999999874 3489999999 56999999999999987443 35555543211 12
Q ss_pred CCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 138 LNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 138 ~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.+||+|+. |. +...+...++.+.+.|+||
T Consensus 193 ~~FD~VFI-Da--~K~~Y~~y~e~~l~lL~~G 221 (278)
T PLN02476 193 SSYDFAFV-DA--DKRMYQDYFELLLQLVRVG 221 (278)
T ss_pred CCCCEEEE-CC--CHHHHHHHHHHHHHhcCCC
Confidence 48999996 43 3577889999999999986
No 138
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.94 E-value=1.1e-08 Score=81.48 Aligned_cols=99 Identities=13% Similarity=0.023 Sum_probs=63.7
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhC-----CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcC
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG-----SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWG 129 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g-----a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~ 129 (169)
...+++.+.+... ..+.+|||+|||+|..+..+++.. ..|+++|++ +.+++.++++. ..+.+...+..
T Consensus 71 ~~~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s--~~~l~~A~~~~----~~~~~~~~d~~ 143 (272)
T PRK11088 71 RDAVANLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDIS--KVAIKYAAKRY----PQVTFCVASSH 143 (272)
T ss_pred HHHHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCC--HHHHHHHHHhC----CCCeEEEeecc
Confidence 3444444544322 245689999999999998887642 379999999 56998887653 22333323322
Q ss_pred CCCcCCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 130 FLDASIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 130 ~~~~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+ .++.+.+||+|++.. .+ ..++.+.+.|+|+
T Consensus 144 ~--lp~~~~sfD~I~~~~---~~----~~~~e~~rvLkpg 174 (272)
T PRK11088 144 R--LPFADQSLDAIIRIY---AP----CKAEELARVVKPG 174 (272)
T ss_pred c--CCCcCCceeEEEEec---CC----CCHHHHHhhccCC
Confidence 2 234456899999753 22 3456788889886
No 139
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.93 E-value=7.2e-09 Score=86.20 Aligned_cols=99 Identities=20% Similarity=0.074 Sum_probs=79.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCC-----CCCCCcE
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASI-----FDLNPNI 142 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~-----~~~~fDl 142 (169)
.+|++||++-|=||..|+.+|..|| +|+.+|+|. ..++.+++|.++|+++...+.+.+++..+.+ ...+||+
T Consensus 216 ~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~--~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDl 293 (393)
T COG1092 216 AAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSK--RALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDL 293 (393)
T ss_pred ccCCeEEEecccCcHHHHHHHhcCCCceEEEeccH--HHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccE
Confidence 3699999999999999999999999 899999995 5999999999999997655556666654322 2349999
Q ss_pred EEEcCcCCCC---------CChHHHHHHHHHhccCC
Q 030935 143 ILGADVFYDA---------SGKICAFEILICSLFPI 169 (169)
Q Consensus 143 Ii~sd~iy~~---------~~~~~l~~~l~~~L~p~ 169 (169)
||.-.+-|-. .++..++..+.+.|+|+
T Consensus 294 IilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pg 329 (393)
T COG1092 294 IILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPG 329 (393)
T ss_pred EEECCcccccCcccchhHHHHHHHHHHHHHHHcCCC
Confidence 9986666632 33667888888888885
No 140
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.93 E-value=1.1e-08 Score=81.01 Aligned_cols=87 Identities=14% Similarity=0.009 Sum_probs=61.8
Q ss_pred HHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCC
Q 030935 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF 136 (169)
Q Consensus 57 ~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~ 136 (169)
-+++.+.+.....++.+|||+|||+|.++..+++.+.+|+++|+++ .+++.+++++... .++.+. .++.... .
T Consensus 16 ~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~--~~~~~l~~~~~~~-~~v~ii---~~D~~~~-~ 88 (258)
T PRK14896 16 RVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDP--RLAEFLRDDEIAA-GNVEII---EGDALKV-D 88 (258)
T ss_pred HHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCH--HHHHHHHHHhccC-CCEEEE---EeccccC-C
Confidence 3445555555556788999999999999999999988999999994 6999999887541 123333 3333221 1
Q ss_pred CCCCcEEEEcCcCC
Q 030935 137 DLNPNIILGADVFY 150 (169)
Q Consensus 137 ~~~fDlIi~sd~iy 150 (169)
-..||.|+++-+.|
T Consensus 89 ~~~~d~Vv~NlPy~ 102 (258)
T PRK14896 89 LPEFNKVVSNLPYQ 102 (258)
T ss_pred chhceEEEEcCCcc
Confidence 12589999876644
No 141
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.92 E-value=7.3e-09 Score=82.58 Aligned_cols=89 Identities=15% Similarity=0.133 Sum_probs=61.0
Q ss_pred HHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCC
Q 030935 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFD 137 (169)
Q Consensus 58 La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~ 137 (169)
+++.+.+.....++.+|||+|||+|.++..+++.+.+|+++|++ ++|++.+++++.. .++.+...++.... ..+
T Consensus 30 i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d--~~~~~~~~~~~~~--~~v~~i~~D~~~~~--~~~ 103 (272)
T PRK00274 30 ILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEID--RDLAPILAETFAE--DNLTIIEGDALKVD--LSE 103 (272)
T ss_pred HHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECC--HHHHHHHHHhhcc--CceEEEEChhhcCC--HHH
Confidence 44556555555677899999999999999999998899999999 5699999887743 23333333333221 111
Q ss_pred CCCcEEEEcCcCCCCC
Q 030935 138 LNPNIILGADVFYDAS 153 (169)
Q Consensus 138 ~~fDlIi~sd~iy~~~ 153 (169)
..++.|+++-+ |+..
T Consensus 104 ~~~~~vv~NlP-Y~is 118 (272)
T PRK00274 104 LQPLKVVANLP-YNIT 118 (272)
T ss_pred cCcceEEEeCC-ccch
Confidence 12588888755 5553
No 142
>PRK04457 spermidine synthase; Provisional
Probab=98.89 E-value=1.8e-08 Score=80.01 Aligned_cols=95 Identities=14% Similarity=0.071 Sum_probs=67.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC--CCCCCCcEEEE
Q 030935 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS--IFDLNPNIILG 145 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~--~~~~~fDlIi~ 145 (169)
++++|||||||+|.++..+++. +.+|+++|++ +++++.+++++..++...++. +..++.... ..+.+||+|+.
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEid--p~vi~~A~~~f~~~~~~~rv~-v~~~Da~~~l~~~~~~yD~I~~ 142 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEIN--PQVIAVARNHFELPENGERFE-VIEADGAEYIAVHRHSTDVILV 142 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECC--HHHHHHHHHHcCCCCCCCceE-EEECCHHHHHHhCCCCCCEEEE
Confidence 4578999999999999988775 3589999999 569999999987554322222 223333221 12358999997
Q ss_pred cCcCCCCC------ChHHHHHHHHHhccCC
Q 030935 146 ADVFYDAS------GKICAFEILICSLFPI 169 (169)
Q Consensus 146 sd~iy~~~------~~~~l~~~l~~~L~p~ 169 (169)
|. |+.. ....+++.+++.|+|+
T Consensus 143 -D~-~~~~~~~~~l~t~efl~~~~~~L~pg 170 (262)
T PRK04457 143 -DG-FDGEGIIDALCTQPFFDDCRNALSSD 170 (262)
T ss_pred -eC-CCCCCCccccCcHHHHHHHHHhcCCC
Confidence 43 3222 2378999999999996
No 143
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.89 E-value=7e-08 Score=81.94 Aligned_cols=113 Identities=17% Similarity=0.081 Sum_probs=76.0
Q ss_pred eeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEE
Q 030935 49 LFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMG 125 (169)
Q Consensus 49 ~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~ 125 (169)
+.+++.+..++..+.. ..+|.+|||+|||+|..++.+++. +.+|+++|++ +.+++.+++|++..++.. +.
T Consensus 232 ~~vqd~~s~l~~~~l~---~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s--~~~l~~~~~~~~~~g~~~-v~- 304 (445)
T PRK14904 232 VSVQNPTQALACLLLN---PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRY--PQKLEKIRSHASALGITI-IE- 304 (445)
T ss_pred EEEeCHHHHHHHHhcC---CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECC--HHHHHHHHHHHHHhCCCe-EE-
Confidence 4666555555544432 346789999999999999888764 3489999999 569999999999888752 22
Q ss_pred EEcCCCCcCCCCCCCcEEEEcCcCC--------------CC--C-------ChHHHHHHHHHhccCC
Q 030935 126 LTWGFLDASIFDLNPNIILGADVFY--------------DA--S-------GKICAFEILICSLFPI 169 (169)
Q Consensus 126 l~~~~~~~~~~~~~fDlIi~sd~iy--------------~~--~-------~~~~l~~~l~~~L~p~ 169 (169)
...++......+.+||.|+. |+.+ .. . ....++....+.|+||
T Consensus 305 ~~~~Da~~~~~~~~fD~Vl~-D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpg 370 (445)
T PRK14904 305 TIEGDARSFSPEEQPDAILL-DAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPG 370 (445)
T ss_pred EEeCcccccccCCCCCEEEE-cCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 22233322223458999995 3222 11 1 1235888889999986
No 144
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.88 E-value=5e-08 Score=82.61 Aligned_cols=98 Identities=15% Similarity=0.041 Sum_probs=69.4
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHh-C--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC-----CCCCC
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS-----IFDLN 139 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~-g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~-----~~~~~ 139 (169)
..+|.+|||+|||+|..++.+++. + .+|+++|++ +.+++.+++|++.+++.. +. ...++.... ....+
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~--~~rl~~~~~n~~r~g~~~-v~-~~~~D~~~~~~~~~~~~~~ 325 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRS--ASRLKKLQENAQRLGLKS-IK-ILAADSRNLLELKPQWRGY 325 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCC--HHHHHHHHHHHHHcCCCe-EE-EEeCChhhccccccccccc
Confidence 446789999999999999988875 2 489999999 569999999999998753 22 222332211 12358
Q ss_pred CcEEEEcCc------CCCCCC----------------hHHHHHHHHHhccCC
Q 030935 140 PNIILGADV------FYDASG----------------KICAFEILICSLFPI 169 (169)
Q Consensus 140 fDlIi~sd~------iy~~~~----------------~~~l~~~l~~~L~p~ 169 (169)
||.|++--+ +....+ ...+++...+.|+||
T Consensus 326 fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpg 377 (434)
T PRK14901 326 FDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPG 377 (434)
T ss_pred CCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999996322 222221 357888889999986
No 145
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.87 E-value=4.8e-08 Score=77.55 Aligned_cols=97 Identities=9% Similarity=-0.083 Sum_probs=66.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHhCCcc-eEEEEEcCCCCcCCCCCCCcEEE
Q 030935 69 FSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNC-RVMGLTWGFLDASIFDLNPNIIL 144 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~-~~~~l~~~~~~~~~~~~~fDlIi 144 (169)
.+|.+|||+|||+|..++.+++. ...|+++|++ +.+++.+++|++.+++.. .+...+.... .....+||.|+
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~--~~~l~~~~~n~~~~g~~~v~~~~~D~~~~--~~~~~~fD~Vl 145 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFS--KSRTKVLIANINRCGVLNVAVTNFDGRVF--GAAVPKFDAIL 145 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCC--HHHHHHHHHHHHHcCCCcEEEecCCHHHh--hhhccCCCEEE
Confidence 46789999999999999988775 2489999999 569999999999988742 2222222111 11223699999
Q ss_pred EcCcCCCCC----------------------ChHHHHHHHHHhccCC
Q 030935 145 GADVFYDAS----------------------GKICAFEILICSLFPI 169 (169)
Q Consensus 145 ~sd~iy~~~----------------------~~~~l~~~l~~~L~p~ 169 (169)
.--+..... ....+++...+.|+|+
T Consensus 146 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpg 192 (264)
T TIGR00446 146 LDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPG 192 (264)
T ss_pred EcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 743333211 1245788888888885
No 146
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.87 E-value=5.2e-08 Score=82.44 Aligned_cols=99 Identities=13% Similarity=-0.047 Sum_probs=69.3
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHhCCcc-eEEEEEcCCCCcCCCCCCCcEE
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNC-RVMGLTWGFLDASIFDLNPNII 143 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~-~~~~l~~~~~~~~~~~~~fDlI 143 (169)
..+|.+|||+|||+|..++.++.. +.+|+++|++ +.+++.+++|++..++.. ++...+..... .....+||.|
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis--~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~-~~~~~~fD~V 311 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDIS--REKIQLVEKHAKRLKLSSIEIKIADAERLT-EYVQDTFDRI 311 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECC--HHHHHHHHHHHHHcCCCeEEEEECchhhhh-hhhhccCCEE
Confidence 346789999999999999988875 3589999999 569999999999888752 33322222211 1224589999
Q ss_pred EEcCcCCCCC----------------------ChHHHHHHHHHhccCC
Q 030935 144 LGADVFYDAS----------------------GKICAFEILICSLFPI 169 (169)
Q Consensus 144 i~sd~iy~~~----------------------~~~~l~~~l~~~L~p~ 169 (169)
++--+..... ....++....+.|+||
T Consensus 312 l~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG 359 (431)
T PRK14903 312 LVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKG 359 (431)
T ss_pred EECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9733332111 1255688888888886
No 147
>PRK00811 spermidine synthase; Provisional
Probab=98.87 E-value=1.4e-08 Score=81.34 Aligned_cols=96 Identities=17% Similarity=0.026 Sum_probs=66.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-CC-eEEEEcCCCcHHHHHHHHHHHHHhC--C--cceEEEEEcCCCCcCC--CCCCCc
Q 030935 70 SGANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNRIEVLKNMRRVCEMNK--L--NCRVMGLTWGFLDASI--FDLNPN 141 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~-ga-~V~~~D~~~~~~~l~~~~~n~~~n~--~--~~~~~~l~~~~~~~~~--~~~~fD 141 (169)
+.++||+||||+|.++..+++. +. +|+++|++ +++++.+++++...+ . +.++ .+..++..... ...+||
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid--~~vv~~a~~~~~~~~~~~~~d~rv-~v~~~Da~~~l~~~~~~yD 152 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEID--ERVVEVCRKYLPEIAGGAYDDPRV-ELVIGDGIKFVAETENSFD 152 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCC--HHHHHHHHHHhHHhccccccCCce-EEEECchHHHHhhCCCccc
Confidence 4579999999999999988886 43 89999999 569999999876432 1 1222 23444432211 345899
Q ss_pred EEEEcCcC--CCCC---ChHHHHHHHHHhccCC
Q 030935 142 IILGADVF--YDAS---GKICAFEILICSLFPI 169 (169)
Q Consensus 142 lIi~sd~i--y~~~---~~~~l~~~l~~~L~p~ 169 (169)
+|++ |.. +... ....+++.+++.|+|+
T Consensus 153 vIi~-D~~dp~~~~~~l~t~ef~~~~~~~L~~g 184 (283)
T PRK00811 153 VIIV-DSTDPVGPAEGLFTKEFYENCKRALKED 184 (283)
T ss_pred EEEE-CCCCCCCchhhhhHHHHHHHHHHhcCCC
Confidence 9997 431 1111 1267889999999986
No 148
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.86 E-value=2.5e-08 Score=76.91 Aligned_cols=96 Identities=17% Similarity=0.082 Sum_probs=74.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc---CCCCCCCcE
Q 030935 69 FSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA---SIFDLNPNI 142 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~---~~~~~~fDl 142 (169)
...++|||+|.+.|+.++.+|.. ..+++.+|.+ +++.+.|++|++..+...++..+.-++..+ .....+||+
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~--~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDl 135 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERD--EERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDL 135 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCC--HHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccE
Confidence 36789999999999999999874 2389999999 579999999999999887644333233322 223469999
Q ss_pred EEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 143 ILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 143 Ii~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
|+. | .....++.+++.+...|+||
T Consensus 136 iFI-D--adK~~yp~~le~~~~lLr~G 159 (219)
T COG4122 136 VFI-D--ADKADYPEYLERALPLLRPG 159 (219)
T ss_pred EEE-e--CChhhCHHHHHHHHHHhCCC
Confidence 995 3 35677899999999999986
No 149
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.86 E-value=1.9e-08 Score=80.61 Aligned_cols=117 Identities=19% Similarity=0.086 Sum_probs=76.9
Q ss_pred CcceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEE
Q 030935 46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVM 124 (169)
Q Consensus 46 ~~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~ 124 (169)
.+|+.. .-...-.++.++ .+|++||++-|=||.+|+.+++.|| +|+.+|.| ..+++.+++|+++|+++....
T Consensus 104 ktGlFl--DqR~nR~~v~~~---~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S--~~al~~a~~N~~lNg~~~~~~ 176 (286)
T PF10672_consen 104 KTGLFL--DQRENRKWVRKY---AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSS--KRALEWAKENAALNGLDLDRH 176 (286)
T ss_dssp STSS-G--GGHHHHHHHHHH---CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES---HHHHHHHHHHHHHTT-CCTCE
T ss_pred cceEcH--HHHhhHHHHHHH---cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCC--HHHHHHHHHHHHHcCCCccce
Confidence 456532 434444455443 3689999999999999999999998 79999999 469999999999999864333
Q ss_pred EEEcCCCCcCC----CCCCCcEEEEcCcCCCCC------ChHHHHHHHHHhccCC
Q 030935 125 GLTWGFLDASI----FDLNPNIILGADVFYDAS------GKICAFEILICSLFPI 169 (169)
Q Consensus 125 ~l~~~~~~~~~----~~~~fDlIi~sd~iy~~~------~~~~l~~~l~~~L~p~ 169 (169)
.+...+....+ ...+||+||+-.+-|-.. ++..+++.+.+.|+|+
T Consensus 177 ~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~g 231 (286)
T PF10672_consen 177 RFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPG 231 (286)
T ss_dssp EEEES-HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEE
T ss_pred EEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 34344432211 235999999977766432 3556777777777764
No 150
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.85 E-value=1.5e-08 Score=77.70 Aligned_cols=93 Identities=14% Similarity=0.062 Sum_probs=68.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCcC
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVF 149 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~i 149 (169)
+..-|||+|||||+.|-.+...|...+++|+| +.|++.+.+ .... ..+...+.|.- .++.+..||-+|+--.+
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiS--psML~~a~~--~e~e--gdlil~DMG~G-lpfrpGtFDg~ISISAv 122 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDIS--PSMLEQAVE--RELE--GDLILCDMGEG-LPFRPGTFDGVISISAV 122 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCC--HHHHHHHHH--hhhh--cCeeeeecCCC-CCCCCCccceEEEeeee
Confidence 56689999999999999999999899999999 569998886 2222 23344555532 35567799999976666
Q ss_pred CCCCC-----------hHHHHHHHHHhccCC
Q 030935 150 YDASG-----------KICAFEILICSLFPI 169 (169)
Q Consensus 150 y~~~~-----------~~~l~~~l~~~L~p~ 169 (169)
.+.-+ +-.||.+|..+|+++
T Consensus 123 QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg 153 (270)
T KOG1541|consen 123 QWLCNADKSLHVPKKRLLRFFGTLYSCLKRG 153 (270)
T ss_pred eeecccCccccChHHHHHHHhhhhhhhhccC
Confidence 54311 345788888888764
No 151
>PTZ00146 fibrillarin; Provisional
Probab=98.84 E-value=1.9e-07 Score=74.92 Aligned_cols=114 Identities=12% Similarity=-0.007 Sum_probs=72.2
Q ss_pred cceeecch-HHHHHHHHHh---ccCCCCCCeEEEECCCCCHHHHHHHHhC---CeEEEEcCCCcHHHHHHHHHHHH-HhC
Q 030935 47 YGLFVWPC-SVILAEYVWQ---QRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCE-MNK 118 (169)
Q Consensus 47 ~g~~~W~~-~~~La~~l~~---~~~~~~~~~vLElGcGtGl~~l~~a~~g---a~V~~~D~~~~~~~l~~~~~n~~-~n~ 118 (169)
.-+++|.- --.||.-++. +....++.+|||||||+|..+..++... ..|+++|+++ ++++.+...++ ..+
T Consensus 105 ~eyR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~--r~~~dLl~~ak~r~N 182 (293)
T PTZ00146 105 IEYRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSH--RSGRDLTNMAKKRPN 182 (293)
T ss_pred ceeeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcH--HHHHHHHHHhhhcCC
Confidence 35899976 2244444433 2345578899999999999999999863 3799999994 46544443332 222
Q ss_pred CcceEEEEEcCCCCcC----CCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 119 LNCRVMGLTWGFLDAS----IFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 119 ~~~~~~~l~~~~~~~~----~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+ .+.. ++...+ .....||+|++. +. .+.+...++..+.+.|||+
T Consensus 183 I--~~I~---~Da~~p~~y~~~~~~vDvV~~D-va-~pdq~~il~~na~r~LKpG 230 (293)
T PTZ00146 183 I--VPII---EDARYPQKYRMLVPMVDVIFAD-VA-QPDQARIVALNAQYFLKNG 230 (293)
T ss_pred C--EEEE---CCccChhhhhcccCCCCEEEEe-CC-CcchHHHHHHHHHHhccCC
Confidence 2 2221 222111 122479999974 42 4555566777889999986
No 152
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.84 E-value=9.3e-09 Score=78.06 Aligned_cols=95 Identities=16% Similarity=0.073 Sum_probs=71.7
Q ss_pred eEEEECCCCCHHHHHHH-HhCCeEEEEcCCCcHHHHHHHHHHHHHhCC-cceEEEEEcCCCCcCCCCCCCcEEEEcCcCC
Q 030935 73 NVVELGAGTSLPGLVAA-KVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNIILGADVFY 150 (169)
Q Consensus 73 ~vLElGcGtGl~~l~~a-~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~-~~~~~~l~~~~~~~~~~~~~fDlIi~sd~iy 150 (169)
.|||+|||||.---+.- +.+.+|+++|-++ .|.+.+.+.++.+.. ++......-+.....+.+.++|.|+++-++-
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~--~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLC 156 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNE--KMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLC 156 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcH--HHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEe
Confidence 58999999996654443 4567999999995 599999888887743 2221222223222234566999999999999
Q ss_pred CCCChHHHHHHHHHhccCC
Q 030935 151 DASGKICAFEILICSLFPI 169 (169)
Q Consensus 151 ~~~~~~~l~~~l~~~L~p~ 169 (169)
..++....++.+.+.|+|+
T Consensus 157 Sve~~~k~L~e~~rlLRpg 175 (252)
T KOG4300|consen 157 SVEDPVKQLNEVRRLLRPG 175 (252)
T ss_pred ccCCHHHHHHHHHHhcCCC
Confidence 9999999999999999996
No 153
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.84 E-value=2.4e-08 Score=83.16 Aligned_cols=91 Identities=18% Similarity=0.149 Sum_probs=65.9
Q ss_pred CCeEEEECCCCCHHHHHHHHh-CC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCC-CCCCcEEEEcC
Q 030935 71 GANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF-DLNPNIILGAD 147 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~~-ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~-~~~fDlIi~sd 147 (169)
+.+|||++||+|..|+.+++. ++ +|+++|++ +.+++.+++|++.|++... .+..++...... ..+||+|+. |
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din--~~Av~~a~~N~~~N~~~~~--~v~~~Da~~~l~~~~~fD~V~l-D 132 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDIN--PDAVELIKKNLELNGLENE--KVFNKDANALLHEERKFDVVDI-D 132 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCC--HHHHHHHHHHHHHhCCCce--EEEhhhHHHHHhhcCCCCEEEE-C
Confidence 468999999999999999875 43 89999999 5699999999999988632 122233222111 357999998 7
Q ss_pred cCCCCCChHHHHHHHHHhccCC
Q 030935 148 VFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 148 ~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+. ....+++......++|+
T Consensus 133 P~---Gs~~~~l~~al~~~~~~ 151 (382)
T PRK04338 133 PF---GSPAPFLDSAIRSVKRG 151 (382)
T ss_pred CC---CCcHHHHHHHHHHhcCC
Confidence 63 55667777755556653
No 154
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.84 E-value=6.6e-08 Score=72.79 Aligned_cols=101 Identities=15% Similarity=0.037 Sum_probs=63.9
Q ss_pred HHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhC---CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCC-
Q 030935 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLD- 132 (169)
Q Consensus 57 ~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g---a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~- 132 (169)
.+.+...+.....++.+|||+|||+|.++..+++.. .+|+++|+++. + ...+ ..+...+..+..
T Consensus 19 ~~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~--~--------~~~~--i~~~~~d~~~~~~ 86 (188)
T TIGR00438 19 KLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPM--K--------PIEN--VDFIRGDFTDEEV 86 (188)
T ss_pred HHHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEecccc--c--------cCCC--ceEEEeeCCChhH
Confidence 444455545555688899999999999999887753 27999999962 2 1112 233333433211
Q ss_pred -----cCCCCCCCcEEEEcCcCCC-----CC------ChHHHHHHHHHhccCC
Q 030935 133 -----ASIFDLNPNIILGADVFYD-----AS------GKICAFEILICSLFPI 169 (169)
Q Consensus 133 -----~~~~~~~fDlIi~sd~iy~-----~~------~~~~l~~~l~~~L~p~ 169 (169)
......+||+|++.-..+. .. ..+.+++.+.+.|+|+
T Consensus 87 ~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkpg 139 (188)
T TIGR00438 87 LNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPK 139 (188)
T ss_pred HHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCC
Confidence 0123458999998543221 11 1367889999999986
No 155
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.83 E-value=2.7e-08 Score=82.14 Aligned_cols=105 Identities=13% Similarity=0.096 Sum_probs=71.9
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCc
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDA 133 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~ 133 (169)
...|.+++.+.... .+.+|||||||+|.+|+.+++...+|+++|++ +++++.+++|++.|++. +++...+..+...
T Consensus 183 ~~~l~~~v~~~~~~-~~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~--~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~ 259 (353)
T TIGR02143 183 NIKMLEWACEVTQG-SKGDLLELYCGNGNFSLALAQNFRRVLATEIA--KPSVNAAQYNIAANNIDNVQIIRMSAEEFTQ 259 (353)
T ss_pred HHHHHHHHHHHhhc-CCCcEEEEeccccHHHHHHHHhCCEEEEEECC--HHHHHHHHHHHHHcCCCcEEEEEcCHHHHHH
Confidence 45555555554322 23479999999999999999887799999999 56999999999999874 3433333322111
Q ss_pred C------C---C-----CCCCcEEEEcCcCCCCCChHHHHHHHHH
Q 030935 134 S------I---F-----DLNPNIILGADVFYDASGKICAFEILIC 164 (169)
Q Consensus 134 ~------~---~-----~~~fDlIi~sd~iy~~~~~~~l~~~l~~ 164 (169)
. . . ..+||+|+. |+- .....+.+++.|.+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~d~v~l-DPP-R~G~~~~~l~~l~~ 302 (353)
T TIGR02143 260 AMNGVREFRRLKGIDLKSYNCSTIFV-DPP-RAGLDPDTCKLVQA 302 (353)
T ss_pred HHhhccccccccccccccCCCCEEEE-CCC-CCCCcHHHHHHHHc
Confidence 1 0 0 124899997 655 45666777777654
No 156
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.82 E-value=5.3e-08 Score=76.81 Aligned_cols=100 Identities=14% Similarity=0.121 Sum_probs=68.8
Q ss_pred hHHHHHHHHHh---ccCCCCCCeEEEECCCCCHHHHHHHHh-C-CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEE--
Q 030935 54 CSVILAEYVWQ---QRYRFSGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGL-- 126 (169)
Q Consensus 54 ~~~~La~~l~~---~~~~~~~~~vLElGcGtGl~~l~~a~~-g-a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l-- 126 (169)
-++.+.+++.. +..-+++..+||+|||+|.+++.++.. + ..|+++|.++ .++..+.+|++.+++...+...
T Consensus 129 ETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~--~Ai~La~eN~qr~~l~g~i~v~~~ 206 (328)
T KOG2904|consen 129 ETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSK--AAIKLAKENAQRLKLSGRIEVIHN 206 (328)
T ss_pred cHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccH--HHHHHHHHHHHHHhhcCceEEEec
Confidence 35555556553 233445668999999999999988774 3 3799999995 5999999999999876543322
Q ss_pred ----EcCCCCcCCCCCCCcEEEEcCcCCCCCChH
Q 030935 127 ----TWGFLDASIFDLNPNIILGADVFYDASGKI 156 (169)
Q Consensus 127 ----~~~~~~~~~~~~~fDlIi~sd~iy~~~~~~ 156 (169)
+|.+. .+....++|+++|+.+.-...+.+
T Consensus 207 ~me~d~~~~-~~l~~~~~dllvsNPPYI~~dD~~ 239 (328)
T KOG2904|consen 207 IMESDASDE-HPLLEGKIDLLVSNPPYIRKDDNR 239 (328)
T ss_pred ccccccccc-cccccCceeEEecCCCcccccchh
Confidence 22221 123446999999987765444433
No 157
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.80 E-value=1.4e-08 Score=77.83 Aligned_cols=109 Identities=17% Similarity=0.060 Sum_probs=78.0
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCC
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFL 131 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~ 131 (169)
+..-++++.......+.++|||+||++|..++.+|+. +++|+.+|.+ ++..+.|++|++..++..++. +..++.
T Consensus 30 ~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~--~~~~~~A~~~~~~ag~~~~I~-~~~gda 106 (205)
T PF01596_consen 30 SPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEID--PERAEIARENFRKAGLDDRIE-VIEGDA 106 (205)
T ss_dssp HHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESS--HHHHHHHHHHHHHTTGGGGEE-EEES-H
T ss_pred CHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCc--HHHHHHHHHHHHhcCCCCcEE-EEEecc
Confidence 4444444443333345689999999999999999974 5699999999 679999999999998865543 444543
Q ss_pred CcC---C----CCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 132 DAS---I----FDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 132 ~~~---~----~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.+. . ...+||+|+. |. ....+...++.+...|+||
T Consensus 107 ~~~l~~l~~~~~~~~fD~VFi-Da--~K~~y~~y~~~~~~ll~~g 148 (205)
T PF01596_consen 107 LEVLPELANDGEEGQFDFVFI-DA--DKRNYLEYFEKALPLLRPG 148 (205)
T ss_dssp HHHHHHHHHTTTTTSEEEEEE-ES--TGGGHHHHHHHHHHHEEEE
T ss_pred HhhHHHHHhccCCCceeEEEE-cc--cccchhhHHHHHhhhccCC
Confidence 221 1 1247999996 43 4677888888888888875
No 158
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.78 E-value=6.1e-08 Score=80.50 Aligned_cols=91 Identities=12% Similarity=0.032 Sum_probs=64.5
Q ss_pred CCeEEEECCCCCHHHHHHHHh--CC-eEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCcCCCCCCCcEEEEc
Q 030935 71 GANVVELGAGTSLPGLVAAKV--GS-NVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASIFDLNPNIILGA 146 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~~--ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~~~~~~~fDlIi~s 146 (169)
+.+|||+.||+|..|+.+++. |+ +|+++|++ +.+++.+++|++.|+.. +++...+....... ...+||+|..
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n--~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~-~~~~fDvIdl- 120 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDIN--PKAVESIKNNVEYNSVENIEVPNEDAANVLRY-RNRKFHVIDI- 120 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCC--HHHHHHHHHHHHHhCCCcEEEEchhHHHHHHH-hCCCCCEEEe-
Confidence 358999999999999999987 55 89999999 57999999999999875 33333222222111 1247999997
Q ss_pred CcCCCCCChHHHHHHHHHhccC
Q 030935 147 DVFYDASGKICAFEILICSLFP 168 (169)
Q Consensus 147 d~iy~~~~~~~l~~~l~~~L~p 168 (169)
|+ |. ...+++....+.+++
T Consensus 121 DP-fG--s~~~fld~al~~~~~ 139 (374)
T TIGR00308 121 DP-FG--TPAPFVDSAIQASAE 139 (374)
T ss_pred CC-CC--CcHHHHHHHHHhccc
Confidence 88 53 334566655555543
No 159
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.78 E-value=8.7e-08 Score=78.09 Aligned_cols=111 Identities=19% Similarity=0.020 Sum_probs=85.7
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEc-CCCCc
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTW-GFLDA 133 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~-~~~~~ 133 (169)
...||+.|.+.....+|..|||=-||||.+-+.+...|++|+++|++ .+|++-++.|++..++..- ..+.. +....
T Consensus 182 ~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did--~~mv~gak~Nl~~y~i~~~-~~~~~~Da~~l 258 (347)
T COG1041 182 DPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDID--ERMVRGAKINLEYYGIEDY-PVLKVLDATNL 258 (347)
T ss_pred CHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchH--HHHHhhhhhhhhhhCcCce-eEEEecccccC
Confidence 35677777776677789999999999999999999999999999999 4699999999999886532 22332 22222
Q ss_pred CCCCCCCcEEEEcCcCCCCCC----------hHHHHHHHHHhccCC
Q 030935 134 SIFDLNPNIILGADVFYDASG----------KICAFEILICSLFPI 169 (169)
Q Consensus 134 ~~~~~~fDlIi~sd~iy~~~~----------~~~l~~~l~~~L~p~ 169 (169)
++.+..+|.|++ |+-|-... +..+++.+.+.|+++
T Consensus 259 pl~~~~vdaIat-DPPYGrst~~~~~~l~~Ly~~~le~~~evLk~g 303 (347)
T COG1041 259 PLRDNSVDAIAT-DPPYGRSTKIKGEGLDELYEEALESASEVLKPG 303 (347)
T ss_pred CCCCCccceEEe-cCCCCcccccccccHHHHHHHHHHHHHHHhhcC
Confidence 344446999996 99884433 677888999999874
No 160
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.78 E-value=9e-09 Score=79.68 Aligned_cols=91 Identities=13% Similarity=0.033 Sum_probs=64.6
Q ss_pred eEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCC--CCCCcEEEEcCcCC
Q 030935 73 NVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF--DLNPNIILGADVFY 150 (169)
Q Consensus 73 ~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~--~~~fDlIi~sd~iy 150 (169)
.++|+|||+|..++.+|..-.+|++||.+ +.||+.+++.-...-.... ..+.-.+. ..+. +++.|+|+|+-++|
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k~VIatD~s--~~mL~~a~k~~~~~y~~t~-~~ms~~~~-v~L~g~e~SVDlI~~Aqa~H 111 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHYKEVIATDVS--EAMLKVAKKHPPVTYCHTP-STMSSDEM-VDLLGGEESVDLITAAQAVH 111 (261)
T ss_pred eEEEeccCCCcchHHHHHhhhhheeecCC--HHHHHHhhcCCCcccccCC-cccccccc-ccccCCCcceeeehhhhhHH
Confidence 79999999998899999987799999999 5699977653221111100 00110111 1122 56999999999999
Q ss_pred CCCChHHHHHHHHHhccC
Q 030935 151 DASGKICAFEILICSLFP 168 (169)
Q Consensus 151 ~~~~~~~l~~~l~~~L~p 168 (169)
+-. ++.+++.+.+.|+|
T Consensus 112 WFd-le~fy~~~~rvLRk 128 (261)
T KOG3010|consen 112 WFD-LERFYKEAYRVLRK 128 (261)
T ss_pred hhc-hHHHHHHHHHHcCC
Confidence 764 78899999999987
No 161
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=3.5e-08 Score=71.10 Aligned_cols=95 Identities=15% Similarity=0.082 Sum_probs=67.7
Q ss_pred cchHHHHHHHHH----hccCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEE
Q 030935 52 WPCSVILAEYVW----QQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGL 126 (169)
Q Consensus 52 W~~~~~La~~l~----~~~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l 126 (169)
+|....+|.-|. +.-..+.|++++|||||+|.+++.++..++ .|++.|++ +++++.+.+|++...++..+..-
T Consensus 26 Y~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDId--peALEIf~rNaeEfEvqidlLqc 103 (185)
T KOG3420|consen 26 YPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDID--PEALEIFTRNAEEFEVQIDLLQC 103 (185)
T ss_pred CCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecC--HHHHHHHhhchHHhhhhhheeee
Confidence 444444444333 223568999999999999999988888887 69999999 67999999999887776644333
Q ss_pred EcCCCCcCCCCCCCcEEEEcCcCC
Q 030935 127 TWGFLDASIFDLNPNIILGADVFY 150 (169)
Q Consensus 127 ~~~~~~~~~~~~~fDlIi~sd~iy 150 (169)
+..+. ......||.++-+..+=
T Consensus 104 dildl--e~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 104 DILDL--ELKGGIFDTAVINPPFG 125 (185)
T ss_pred eccch--hccCCeEeeEEecCCCC
Confidence 33322 22335889988766653
No 162
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.74 E-value=8e-08 Score=71.75 Aligned_cols=88 Identities=17% Similarity=0.167 Sum_probs=64.3
Q ss_pred chHHHHHHHHHhccC---CCCCC-eEEEECCCCCHHHHHHHHhCC--eEEEEcCCCcHHHHHHHHHHHHHhCCc--ceEE
Q 030935 53 PCSVILAEYVWQQRY---RFSGA-NVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVM 124 (169)
Q Consensus 53 ~~~~~La~~l~~~~~---~~~~~-~vLElGcGtGl~~l~~a~~ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~--~~~~ 124 (169)
.+-..+.+|+..+.. ..+.. +|||||||.|.+-.-+++.|. +.+++|+++ .+++.|+.-++.++.+ ++++
T Consensus 46 ~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~--~AV~LA~niAe~~~~~n~I~f~ 123 (227)
T KOG1271|consen 46 DAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSE--KAVELAQNIAERDGFSNEIRFQ 123 (227)
T ss_pred cHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCH--HHHHHHHHHHHhcCCCcceeEE
Confidence 456677788876643 12333 999999999999999999886 599999994 5999988877888876 4555
Q ss_pred EEEcCCCCcCCCCCCCcEEE
Q 030935 125 GLTWGFLDASIFDLNPNIIL 144 (169)
Q Consensus 125 ~l~~~~~~~~~~~~~fDlIi 144 (169)
.++.-.. ...+.+||+|+
T Consensus 124 q~DI~~~--~~~~~qfdlvl 141 (227)
T KOG1271|consen 124 QLDITDP--DFLSGQFDLVL 141 (227)
T ss_pred EeeccCC--cccccceeEEe
Confidence 5544332 34455888887
No 163
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.69 E-value=1.3e-07 Score=74.61 Aligned_cols=56 Identities=16% Similarity=0.187 Sum_probs=46.2
Q ss_pred HHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHH
Q 030935 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCE 115 (169)
Q Consensus 58 La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~ 115 (169)
+++.+.+.....++.+|||+|||+|.++..+++.+.+|+++|.+ +++++.++.+..
T Consensus 17 i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d--~~~~~~l~~~~~ 72 (253)
T TIGR00755 17 VIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEID--PRLAEILRKLLS 72 (253)
T ss_pred HHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECC--HHHHHHHHHHhC
Confidence 44455555455577899999999999999999998899999999 469999988774
No 164
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.68 E-value=1.5e-07 Score=79.86 Aligned_cols=96 Identities=16% Similarity=0.192 Sum_probs=64.5
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC-----C-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEE
Q 030935 70 SGANVVELGAGTSLPGLVAAKVG-----S-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNII 143 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~g-----a-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlI 143 (169)
+++.||++|||+|.++..+++.+ + +|++++.++. ++..+++.++.|+...++. +..++.+.-..+.++|+|
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~--A~~~l~~~v~~n~w~~~V~-vi~~d~r~v~lpekvDII 262 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPN--AVVTLQKRVNANGWGDKVT-VIHGDMREVELPEKVDII 262 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTH--HHHHHHHHHHHTTTTTTEE-EEES-TTTSCHSS-EEEE
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHh--HHHHHHHHHHhcCCCCeEE-EEeCcccCCCCCCceeEE
Confidence 46789999999999999888765 3 8999999964 6666666667788755543 455666554456699999
Q ss_pred EEcCcC---CCCCChHHHHHHHHHhccCC
Q 030935 144 LGADVF---YDASGKICAFEILICSLFPI 169 (169)
Q Consensus 144 i~sd~i---y~~~~~~~l~~~l~~~L~p~ 169 (169)
|+ ..+ =..+..+..+....+.|+|+
T Consensus 263 VS-ElLGsfg~nEl~pE~Lda~~rfLkp~ 290 (448)
T PF05185_consen 263 VS-ELLGSFGDNELSPECLDAADRFLKPD 290 (448)
T ss_dssp EE----BTTBTTTSHHHHHHHGGGGEEEE
T ss_pred EE-eccCCccccccCHHHHHHHHhhcCCC
Confidence 95 443 12345566677777788874
No 165
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.68 E-value=5e-08 Score=74.43 Aligned_cols=88 Identities=16% Similarity=0.029 Sum_probs=57.8
Q ss_pred CCCCCeEEEECCCCCHHHHHHHH--hCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEE
Q 030935 68 RFSGANVVELGAGTSLPGLVAAK--VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILG 145 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~--~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~ 145 (169)
..+|.+|+|+.||.|.+++.+|+ .++.|++.|++ |.+++.+++|+++|++...+..+ .++.........||-|+.
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~N--p~a~~~L~~Ni~lNkv~~~i~~~-~~D~~~~~~~~~~drvim 175 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLN--PDAVEYLKENIRLNKVENRIEVI-NGDAREFLPEGKFDRVIM 175 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES---HHHHHHHHHHHHHTT-TTTEEEE-ES-GGG---TT-EEEEEE
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCC--HHHHHHHHHHHHHcCCCCeEEEE-cCCHHHhcCccccCEEEE
Confidence 34688999999999999999999 55689999999 67999999999999998665434 333333333568999998
Q ss_pred cCcCCCCCChHHH
Q 030935 146 ADVFYDASGKICA 158 (169)
Q Consensus 146 sd~iy~~~~~~~l 158 (169)
.-+-.....++.+
T Consensus 176 ~lp~~~~~fl~~~ 188 (200)
T PF02475_consen 176 NLPESSLEFLDAA 188 (200)
T ss_dssp --TSSGGGGHHHH
T ss_pred CChHHHHHHHHHH
Confidence 6655444444443
No 166
>PLN02366 spermidine synthase
Probab=98.67 E-value=2.2e-07 Score=75.37 Aligned_cols=97 Identities=13% Similarity=0.007 Sum_probs=66.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHh--CCcceEEEEEcCCCCc---CCCCCCCcE
Q 030935 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMN--KLNCRVMGLTWGFLDA---SIFDLNPNI 142 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n--~~~~~~~~l~~~~~~~---~~~~~~fDl 142 (169)
..++||+||||.|.+...+++.. .+|+++|++ +++++.+++.+... +.+.....+.+++... ...+.+||+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD--~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEID--KMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECC--HHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 46799999999999999888864 389999999 56999999987542 1221122344555322 222458999
Q ss_pred EEEcCcCCCCC-----ChHHHHHHHHHhccCC
Q 030935 143 ILGADVFYDAS-----GKICAFEILICSLFPI 169 (169)
Q Consensus 143 Ii~sd~iy~~~-----~~~~l~~~l~~~L~p~ 169 (169)
|++ |..-... ....+++.+++.|+|+
T Consensus 169 Ii~-D~~dp~~~~~~L~t~ef~~~~~~~L~pg 199 (308)
T PLN02366 169 IIV-DSSDPVGPAQELFEKPFFESVARALRPG 199 (308)
T ss_pred EEE-cCCCCCCchhhhhHHHHHHHHHHhcCCC
Confidence 997 4422111 1356899999999986
No 167
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.66 E-value=1.4e-07 Score=70.76 Aligned_cols=93 Identities=15% Similarity=0.112 Sum_probs=62.4
Q ss_pred HHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC--e---------EEEEcCCCcHHHHHHHHHHHHHhCCcceEE
Q 030935 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS--N---------VTLTDDSNRIEVLKNMRRVCEMNKLNCRVM 124 (169)
Q Consensus 56 ~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga--~---------V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~ 124 (169)
..||.-|.......++..+||--||+|.+.+.++..+. . +++.|++ +++++.++.|++..+....+.
T Consensus 14 ~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~--~~~v~~a~~N~~~ag~~~~i~ 91 (179)
T PF01170_consen 14 PTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDID--PKAVRGARENLKAAGVEDYID 91 (179)
T ss_dssp HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESS--HHHHHHHHHHHHHTT-CGGEE
T ss_pred HHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCC--HHHHHHHHHHHHhcccCCceE
Confidence 45666666655555778999999999999999888654 3 7799999 569999999999988865544
Q ss_pred EEEcCCCCcCCCCCCCcEEEEcCcCCC
Q 030935 125 GLTWGFLDASIFDLNPNIILGADVFYD 151 (169)
Q Consensus 125 ~l~~~~~~~~~~~~~fDlIi~sd~iy~ 151 (169)
...|+....+.....+|+|++ |+-|-
T Consensus 92 ~~~~D~~~l~~~~~~~d~Ivt-nPPyG 117 (179)
T PF01170_consen 92 FIQWDARELPLPDGSVDAIVT-NPPYG 117 (179)
T ss_dssp EEE--GGGGGGTTSBSCEEEE-E--ST
T ss_pred EEecchhhcccccCCCCEEEE-Ccchh
Confidence 444443322334568999997 55553
No 168
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.66 E-value=1.1e-07 Score=74.74 Aligned_cols=95 Identities=17% Similarity=0.075 Sum_probs=72.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCC--------CC
Q 030935 69 FSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASI--------FD 137 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~--------~~ 137 (169)
.+.++|||||+++|+.++++|+. +.+|+.+|.+ ++..+.|+.|++..++..++. +..|+..+.+ ..
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~--~~~~~~Ar~~~~~ag~~~~I~-~~~G~a~e~L~~l~~~~~~~ 154 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDIN--RENYELGLPVIQKAGVAHKID-FREGPALPVLDQMIEDGKYH 154 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCC--HHHHHHHHHHHHHCCCCCceE-EEeccHHHHHHHHHhccccC
Confidence 35679999999999999999874 4589999999 568999999999998764443 4455432211 12
Q ss_pred CCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 138 LNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 138 ~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.+||+|+. |. +...+...++.+...|+||
T Consensus 155 ~~fD~iFi-Da--dK~~Y~~y~~~~l~ll~~G 183 (247)
T PLN02589 155 GTFDFIFV-DA--DKDNYINYHKRLIDLVKVG 183 (247)
T ss_pred CcccEEEe-cC--CHHHhHHHHHHHHHhcCCC
Confidence 58999996 42 3667788888888999886
No 169
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.65 E-value=3.7e-07 Score=70.90 Aligned_cols=118 Identities=8% Similarity=-0.094 Sum_probs=76.3
Q ss_pred CcceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHH----------
Q 030935 46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCE---------- 115 (169)
Q Consensus 46 ~~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~---------- 115 (169)
.+|+..=.....|.+|+.+... .++.+||..|||.|.-.+.+|.+|.+|+++|+++ .+++.+.+...
T Consensus 20 ~~~f~~~~pnp~L~~~~~~l~~-~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~--~Ai~~~~~e~~~~~~~~~~~~ 96 (226)
T PRK13256 20 DVGFCQESPNEFLVKHFSKLNI-NDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSE--KAVLSFFSQNTINYEVIHGND 96 (226)
T ss_pred CCCCccCCCCHHHHHHHHhcCC-CCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCH--HHHHHHHHHcCCCcceecccc
Confidence 3454333345566666655432 2567999999999999999999999999999994 58877644210
Q ss_pred ---HhCCcceEEEEEcCCCCcCCC----CCCCcEEEEcCcC--CCCCChHHHHHHHHHhccCC
Q 030935 116 ---MNKLNCRVMGLTWGFLDASIF----DLNPNIILGADVF--YDASGKICAFEILICSLFPI 169 (169)
Q Consensus 116 ---~n~~~~~~~~l~~~~~~~~~~----~~~fDlIi~sd~i--y~~~~~~~l~~~l~~~L~p~ 169 (169)
..+..++ +..+++..... ..+||+|+=.-++ ..++.-..-++.+++.|+|+
T Consensus 97 ~~~~~~~~i~---~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pg 156 (226)
T PRK13256 97 YKLYKGDDIE---IYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNN 156 (226)
T ss_pred cceeccCceE---EEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCC
Confidence 0112222 33444433211 1379997743333 34455677889999999985
No 170
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=1.2e-07 Score=80.16 Aligned_cols=106 Identities=17% Similarity=0.083 Sum_probs=74.7
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcc-eEEEEEcCCCCc
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNC-RVMGLTWGFLDA 133 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~-~~~~l~~~~~~~ 133 (169)
+..|..+........++.++||+=||.|.+|+.+|+...+|+++|++ +++++.|++|++.|++.. .+...+..++..
T Consensus 278 ~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~--~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~ 355 (432)
T COG2265 278 AEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEIS--PEAVEAAQENAAANGIDNVEFIAGDAEEFTP 355 (432)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecC--HHHHHHHHHHHHHcCCCcEEEEeCCHHHHhh
Confidence 66777777777666677899999999999999999999999999999 679999999999999874 333222222221
Q ss_pred CC-CCCCCcEEEEcCcCCCCCChHHHHHHHHH
Q 030935 134 SI-FDLNPNIILGADVFYDASGKICAFEILIC 164 (169)
Q Consensus 134 ~~-~~~~fDlIi~sd~iy~~~~~~~l~~~l~~ 164 (169)
.. ....||.|+. |+.= ...-+.+++.|.+
T Consensus 356 ~~~~~~~~d~Vvv-DPPR-~G~~~~~lk~l~~ 385 (432)
T COG2265 356 AWWEGYKPDVVVV-DPPR-AGADREVLKQLAK 385 (432)
T ss_pred hccccCCCCEEEE-CCCC-CCCCHHHHHHHHh
Confidence 21 1247899986 4331 1223345554443
No 171
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=1.3e-07 Score=80.21 Aligned_cols=67 Identities=13% Similarity=0.137 Sum_probs=60.6
Q ss_pred chHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcc
Q 030935 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNC 121 (169)
Q Consensus 53 ~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~ 121 (169)
.++.+|..++..+.....++.+||+.||||.+|+.+|+.-.+|++++++ ++.++-|+.|++.|+++.
T Consensus 366 ~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~--~~aV~dA~~nA~~NgisN 432 (534)
T KOG2187|consen 366 SAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEIS--PDAVEDAEKNAQINGISN 432 (534)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecC--hhhcchhhhcchhcCccc
Confidence 3578889999888877788899999999999999999998899999999 569999999999999863
No 172
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.62 E-value=2.9e-07 Score=73.31 Aligned_cols=96 Identities=18% Similarity=0.010 Sum_probs=64.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCC--c-ceEEEEEcCCCCcC--CCCCCCcE
Q 030935 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKL--N-CRVMGLTWGFLDAS--IFDLNPNI 142 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~--~-~~~~~l~~~~~~~~--~~~~~fDl 142 (169)
..++||+||||+|.++..+++.. .+|+++|++ +++++.+++++...+. . .++ .+..++.... ..+.+||+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid--~~vi~~a~~~~~~~~~~~~~~~v-~i~~~D~~~~l~~~~~~yDv 148 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDID--EKVIELSKKFLPSLAGSYDDPRV-DLQIDDGFKFLADTENTFDV 148 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCC--HHHHHHHHHHhHhhcccccCCce-EEEECchHHHHHhCCCCccE
Confidence 34699999999999988887764 389999999 5699999998754321 1 111 1222332211 12458999
Q ss_pred EEEcCcCC---CCCC--hHHHHHHHHHhccCC
Q 030935 143 ILGADVFY---DASG--KICAFEILICSLFPI 169 (169)
Q Consensus 143 Ii~sd~iy---~~~~--~~~l~~~l~~~L~p~ 169 (169)
|++ |... .... ...+++.+++.|+|+
T Consensus 149 Ii~-D~~~~~~~~~~l~~~ef~~~~~~~L~pg 179 (270)
T TIGR00417 149 IIV-DSTDPVGPAETLFTKEFYELLKKALNED 179 (270)
T ss_pred EEE-eCCCCCCcccchhHHHHHHHHHHHhCCC
Confidence 997 4332 1122 467889999999986
No 173
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.57 E-value=1.4e-07 Score=77.86 Aligned_cols=72 Identities=18% Similarity=0.112 Sum_probs=55.1
Q ss_pred ecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEE
Q 030935 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMG 125 (169)
Q Consensus 51 ~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~ 125 (169)
-+.....|.+++.......++ ++|||-||+|.+|+.+|+.+.+|+++|++ +++++.|++|++.|++. +.+..
T Consensus 178 N~~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~--~~av~~A~~Na~~N~i~n~~f~~ 250 (352)
T PF05958_consen 178 NPEQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIV--EEAVEDARENAKLNGIDNVEFIR 250 (352)
T ss_dssp BHHHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSSEEEEEES---HHHHHHHHHHHHHTT--SEEEEE
T ss_pred cHHHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCCeEEEeeCC--HHHHHHHHHHHHHcCCCcceEEE
Confidence 344567777777776655444 89999999999999999999999999999 56999999999999986 34433
No 174
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.56 E-value=1.7e-07 Score=69.17 Aligned_cols=75 Identities=12% Similarity=0.009 Sum_probs=49.6
Q ss_pred eEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceE--EEEEcCCCCcCCCCC-CCcEEEEcCcC
Q 030935 73 NVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRV--MGLTWGFLDASIFDL-NPNIILGADVF 149 (169)
Q Consensus 73 ~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~--~~l~~~~~~~~~~~~-~fDlIi~sd~i 149 (169)
.|+|+.||.|.-++.+|+.+.+|+++|++ +..++.++.|++..|...++ ..-+|.+........ .+|+|++|.+.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid--~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPW 79 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDID--PERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPW 79 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES---HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---B
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECC--HHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCC
Confidence 69999999999999999999999999999 67999999999999876443 333333322222212 28999987643
No 175
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.55 E-value=4.2e-07 Score=70.92 Aligned_cols=96 Identities=16% Similarity=0.088 Sum_probs=68.0
Q ss_pred HHHhccCCCCCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCC
Q 030935 61 YVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDL 138 (169)
Q Consensus 61 ~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~ 138 (169)
.+....+....++|||||+|+|..++.+++.. .++++.|+ |.+++.+++ .-.++ +.-+++..+++ .
T Consensus 91 ~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl---p~v~~~~~~-----~~rv~---~~~gd~f~~~P-~ 158 (241)
T PF00891_consen 91 ILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL---PEVIEQAKE-----ADRVE---FVPGDFFDPLP-V 158 (241)
T ss_dssp HHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE----HHHHCCHHH-----TTTEE---EEES-TTTCCS-S
T ss_pred hhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc---Hhhhhcccc-----ccccc---cccccHHhhhc-c
Confidence 33333444455689999999999999998864 48999999 568888777 22233 44566654443 3
Q ss_pred CCcEEEEcCcCCCC--CChHHHHHHHHHhccCC
Q 030935 139 NPNIILGADVFYDA--SGKICAFEILICSLFPI 169 (169)
Q Consensus 139 ~fDlIi~sd~iy~~--~~~~~l~~~l~~~L~p~ 169 (169)
+|+++.+.++|+- +....+++.++++|+|+
T Consensus 159 -~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg 190 (241)
T PF00891_consen 159 -ADVYLLRHVLHDWSDEDCVKILRNAAAALKPG 190 (241)
T ss_dssp -ESEEEEESSGGGS-HHHHHHHHHHHHHHSEEC
T ss_pred -ccceeeehhhhhcchHHHHHHHHHHHHHhCCC
Confidence 9999999999865 44567999999999985
No 176
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.55 E-value=5e-07 Score=71.01 Aligned_cols=88 Identities=16% Similarity=0.112 Sum_probs=69.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCcC
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVF 149 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~i 149 (169)
+..++||||+|.|-++..++..-.+|.+||.|. .|.. .++..|..+ +...+|.+ .+.+||+|.|-.++
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~--~Mr~----rL~~kg~~v-l~~~~w~~-----~~~~fDvIscLNvL 161 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASP--PMRW----RLSKKGFTV-LDIDDWQQ-----TDFKFDVISCLNVL 161 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCCH--HHHH----HHHhCCCeE-Eehhhhhc-----cCCceEEEeehhhh
Confidence 556899999999999999999888999999994 4643 344455543 22234543 23589999999999
Q ss_pred CCCCChHHHHHHHHHhccCC
Q 030935 150 YDASGKICAFEILICSLFPI 169 (169)
Q Consensus 150 y~~~~~~~l~~~l~~~L~p~ 169 (169)
=-...+-.+++.++++|+|.
T Consensus 162 DRc~~P~~LL~~i~~~l~p~ 181 (265)
T PF05219_consen 162 DRCDRPLTLLRDIRRALKPN 181 (265)
T ss_pred hccCCHHHHHHHHHHHhCCC
Confidence 99999999999999999984
No 177
>PRK03612 spermidine synthase; Provisional
Probab=98.53 E-value=6.1e-07 Score=77.69 Aligned_cols=96 Identities=21% Similarity=0.118 Sum_probs=65.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHH---h--CCc-ceEEEEEcCCCCcC--CCCCC
Q 030935 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEM---N--KLN-CRVMGLTWGFLDAS--IFDLN 139 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~---n--~~~-~~~~~l~~~~~~~~--~~~~~ 139 (169)
+.++||++|||+|..+..+++.+ .+|+++|++ +++++.+++|... | ..+ .++ .+..+|.... ..+.+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid--~~vi~~ar~~~~l~~~~~~~~~dprv-~vi~~Da~~~l~~~~~~ 373 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLD--PAMTELARTSPALRALNGGALDDPRV-TVVNDDAFNWLRKLAEK 373 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECC--HHHHHHHHhCCcchhhhccccCCCce-EEEEChHHHHHHhCCCC
Confidence 46799999999999999888875 489999999 5699999986422 2 111 122 2334443221 12358
Q ss_pred CcEEEEcCcCCCC-C-----ChHHHHHHHHHhccCC
Q 030935 140 PNIILGADVFYDA-S-----GKICAFEILICSLFPI 169 (169)
Q Consensus 140 fDlIi~sd~iy~~-~-----~~~~l~~~l~~~L~p~ 169 (169)
||+|++ |..... . ..+++++.+++.|+|+
T Consensus 374 fDvIi~-D~~~~~~~~~~~L~t~ef~~~~~~~L~pg 408 (521)
T PRK03612 374 FDVIIV-DLPDPSNPALGKLYSVEFYRLLKRRLAPD 408 (521)
T ss_pred CCEEEE-eCCCCCCcchhccchHHHHHHHHHhcCCC
Confidence 999998 433211 1 1246899999999986
No 178
>PRK01581 speE spermidine synthase; Validated
Probab=98.52 E-value=4.3e-07 Score=74.89 Aligned_cols=97 Identities=19% Similarity=0.028 Sum_probs=63.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHH---Hh--CCcceEEEEEcCCCCcC--CCCCCC
Q 030935 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCE---MN--KLNCRVMGLTWGFLDAS--IFDLNP 140 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~---~n--~~~~~~~~l~~~~~~~~--~~~~~f 140 (169)
..++||++|||+|.....+++.. .+|+++|++ +++++.|+..-. .+ ........+..++.... ....+|
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEID--peVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLD--GSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCC--HHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 45699999999999888888765 489999999 569999996311 11 11111122334443221 123589
Q ss_pred cEEEEcCcCCCCC-----C-hHHHHHHHHHhccCC
Q 030935 141 NIILGADVFYDAS-----G-KICAFEILICSLFPI 169 (169)
Q Consensus 141 DlIi~sd~iy~~~-----~-~~~l~~~l~~~L~p~ 169 (169)
|+|++ |+..... . -..+++.+++.|+|+
T Consensus 228 DVIIv-Dl~DP~~~~~~~LyT~EFy~~~~~~LkPg 261 (374)
T PRK01581 228 DVIII-DFPDPATELLSTLYTSELFARIATFLTED 261 (374)
T ss_pred cEEEE-cCCCccccchhhhhHHHHHHHHHHhcCCC
Confidence 99996 5422111 1 266899999999996
No 179
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.52 E-value=1.3e-06 Score=70.23 Aligned_cols=82 Identities=22% Similarity=0.251 Sum_probs=47.2
Q ss_pred CCeEEEECCCCC-HHHHHHHH-hCCeEEEEcCCCcHHHHHHHHHHHHHh-CCcceEEEEEcCC---CCcCCC--CCCCcE
Q 030935 71 GANVVELGAGTS-LPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMN-KLNCRVMGLTWGF---LDASIF--DLNPNI 142 (169)
Q Consensus 71 ~~~vLElGcGtG-l~~l~~a~-~ga~V~~~D~~~~~~~l~~~~~n~~~n-~~~~~~~~l~~~~---~~~~~~--~~~fDl 142 (169)
..++||+|+|.- +..+..++ .|-++++||++ +..++.|++|++.| +++.++......+ ...... .+.||+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID--~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~df 180 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDID--PKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDF 180 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES---HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCC--HHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeE
Confidence 457999999965 65776665 56799999999 56999999999999 8775544333222 222221 248999
Q ss_pred EEEcCcCCCCCC
Q 030935 143 ILGADVFYDASG 154 (169)
Q Consensus 143 Ii~sd~iy~~~~ 154 (169)
.+|+.++|....
T Consensus 181 tmCNPPFy~s~~ 192 (299)
T PF05971_consen 181 TMCNPPFYSSQE 192 (299)
T ss_dssp EEE-----SS--
T ss_pred EecCCccccChh
Confidence 999999996643
No 180
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.51 E-value=8.3e-07 Score=69.81 Aligned_cols=101 Identities=17% Similarity=0.146 Sum_probs=67.2
Q ss_pred HHHhccCCCCCCeEEEECCCCCHHHHHHHHh-C--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc-CC-
Q 030935 61 YVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-SI- 135 (169)
Q Consensus 61 ~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~-~~- 135 (169)
+|....+..+|.+|||-|.|+|.++.++++. | .+|+..|+. ++.++.|++|++.+++...+. +...+... .+
T Consensus 31 ~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~--~~~~~~A~~n~~~~gl~~~v~-~~~~Dv~~~g~~ 107 (247)
T PF08704_consen 31 YILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFR--EDRAEKARKNFERHGLDDNVT-VHHRDVCEEGFD 107 (247)
T ss_dssp HHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESS--HHHHHHHHHHHHHTTCCTTEE-EEES-GGCG--S
T ss_pred HHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccC--HHHHHHHHHHHHHcCCCCCce-eEecceeccccc
Confidence 4444566779999999999999999999984 3 399999999 569999999999999863322 44444422 22
Q ss_pred --CCCCCcEEEEcCcCCCCCChHHHHHHHHHhc-cCC
Q 030935 136 --FDLNPNIILGADVFYDASGKICAFEILICSL-FPI 169 (169)
Q Consensus 136 --~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L-~p~ 169 (169)
.+..+|.|+. |+ .++-..+..+.++| +||
T Consensus 108 ~~~~~~~DavfL-Dl----p~Pw~~i~~~~~~L~~~g 139 (247)
T PF08704_consen 108 EELESDFDAVFL-DL----PDPWEAIPHAKRALKKPG 139 (247)
T ss_dssp TT-TTSEEEEEE-ES----SSGGGGHHHHHHHE-EEE
T ss_pred ccccCcccEEEE-eC----CCHHHHHHHHHHHHhcCC
Confidence 1347898885 44 44556667777777 553
No 181
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.48 E-value=6.8e-07 Score=69.50 Aligned_cols=100 Identities=16% Similarity=0.128 Sum_probs=70.0
Q ss_pred CCCCCCeEEEECCCCCHHHHHHHHh-CC-eEEEEcCCCcHHHHHHHHHHHHHhCC---cce-------------------
Q 030935 67 YRFSGANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNRIEVLKNMRRVCEMNKL---NCR------------------- 122 (169)
Q Consensus 67 ~~~~~~~vLElGcGtGl~~l~~a~~-ga-~V~~~D~~~~~~~l~~~~~n~~~n~~---~~~------------------- 122 (169)
+.+.++.+||+||-+|.+++.+|+. |+ .|+++|+++ .+++.|++++...-- .+.
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~--~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~ 132 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDP--VLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNE 132 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccH--HHHHHHHHhccccccccccccCCCcccccccccccccccc
Confidence 4567889999999999999999985 55 699999995 599999999754210 000
Q ss_pred ------------------EEEEEcCCCCcCCCCCCCcEEEEcCcCC------CCCChHHHHHHHHHhccCC
Q 030935 123 ------------------VMGLTWGFLDASIFDLNPNIILGADVFY------DASGKICAFEILICSLFPI 169 (169)
Q Consensus 123 ------------------~~~l~~~~~~~~~~~~~fDlIi~sd~iy------~~~~~~~l~~~l~~~L~p~ 169 (169)
-..++-.++. ......||+|+|--+.- ...-+..+|+.|.++|.||
T Consensus 133 a~~a~t~~~p~n~~f~~~n~vle~~dfl-~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pg 202 (288)
T KOG2899|consen 133 ADRAFTTDFPDNVWFQKENYVLESDDFL-DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPG 202 (288)
T ss_pred ccccccccCCcchhcccccEEEecchhh-hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcC
Confidence 0001111111 11234899999977653 3355788999999999986
No 182
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=1.3e-06 Score=65.25 Aligned_cols=73 Identities=18% Similarity=0.206 Sum_probs=55.6
Q ss_pred CCeEEEECCCCCHHHHHHHHh-C--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcC
Q 030935 71 GANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGAD 147 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~~-g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd 147 (169)
.+.+||||||+|.++-++++. + +...+||++ |.+++..++.++.|+...++..-+ +...+..++.|+++-+.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiN--p~A~~~Tl~TA~~n~~~~~~V~td---l~~~l~~~~VDvLvfNP 118 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDIN--PEALEATLETARCNRVHIDVVRTD---LLSGLRNESVDVLVFNP 118 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCC--HHHHHHHHHHHHhcCCccceeehh---HHhhhccCCccEEEECC
Confidence 457999999999999999885 3 368999999 679999999999998775444333 22333447899998755
Q ss_pred c
Q 030935 148 V 148 (169)
Q Consensus 148 ~ 148 (169)
.
T Consensus 119 P 119 (209)
T KOG3191|consen 119 P 119 (209)
T ss_pred C
Confidence 4
No 183
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.44 E-value=1.2e-06 Score=71.81 Aligned_cols=91 Identities=20% Similarity=0.111 Sum_probs=71.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCe-EEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCC-CCCcEEEEcC
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGSN-VTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFD-LNPNIILGAD 147 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga~-V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~-~~fDlIi~sd 147 (169)
.|.+|||+-||.|-+++.+|+.|+. |+++|++ |.+++.+++|+++|+....+. ...|+..+.... ..+|-|+..-
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diN--P~A~~~L~eNi~LN~v~~~v~-~i~gD~rev~~~~~~aDrIim~~ 264 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDIN--PDAVEYLKENIRLNKVEGRVE-PILGDAREVAPELGVADRIIMGL 264 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCceEEEEecC--HHHHHHHHHHHHhcCccceee-EEeccHHHhhhccccCCEEEeCC
Confidence 5889999999999999999999985 9999999 679999999999999986644 334444333333 5799999877
Q ss_pred cCCCCCChHHHHHHHH
Q 030935 148 VFYDASGKICAFEILI 163 (169)
Q Consensus 148 ~iy~~~~~~~l~~~l~ 163 (169)
+-.....++..++.+.
T Consensus 265 p~~a~~fl~~A~~~~k 280 (341)
T COG2520 265 PKSAHEFLPLALELLK 280 (341)
T ss_pred CCcchhhHHHHHHHhh
Confidence 7665666666665554
No 184
>KOG2497 consensus Predicted methyltransferase [General function prediction only]
Probab=98.41 E-value=2e-07 Score=73.68 Aligned_cols=120 Identities=24% Similarity=0.278 Sum_probs=81.0
Q ss_pred CCcceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHh---CC--
Q 030935 45 EEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN---KL-- 119 (169)
Q Consensus 45 ~~~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n---~~-- 119 (169)
..+|..+|++++.|..++.+++....+.++.++|||.++..+.+++..-.|...+.... +.-+...+...+ ..
T Consensus 65 ~~tg~~~w~~al~L~~~l~~~~d~~~~~~v~~l~~gi~~~~~~~a~~~~~v~~~~~~~~--~~~~l~~~~~~~~~~~~~~ 142 (262)
T KOG2497|consen 65 ARTGLSVWESALSLEADLRDKPDLSSELTVEELGCDIALKHVLAARVPDCVVTLDSLRC--AGLLLEEIILLSRDLSLEV 142 (262)
T ss_pred HHhccccchHHHHHHHHHhhCcccccccchHhhccCHHHHHHHHHhcccceecCCccCc--HHHHHHHHHhccccccccc
Confidence 47899999999999999999998788999999999999999777776544444444432 222222222222 11
Q ss_pred cceEEEEEcCCCCc--CCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhcc
Q 030935 120 NCRVMGLTWGFLDA--SIFDLNPNIILGADVFYDASGKICAFEILICSLF 167 (169)
Q Consensus 120 ~~~~~~l~~~~~~~--~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~ 167 (169)
..+...+.|..... ......+|+|+++|++|. ..+.++++++...|.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~dll~~AdV~yd-~~~~~~~~~~~~lL~ 191 (262)
T KOG2497|consen 143 RDSAPELNQAFLESKPETSQEFTDLLGGADVIYD-TELRHLLETLMTLLL 191 (262)
T ss_pred cccchhHHHHHHhcCcccccchhhheeccCeeeh-hhhhHHHHHHHHHHH
Confidence 11222233332211 111235899999999999 888999988887653
No 185
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.40 E-value=1.3e-06 Score=67.52 Aligned_cols=120 Identities=15% Similarity=-0.009 Sum_probs=76.1
Q ss_pred cceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHH-HHH-HhC--Ccc-
Q 030935 47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRR-VCE-MNK--LNC- 121 (169)
Q Consensus 47 ~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~-n~~-~n~--~~~- 121 (169)
++...-.....|.+|+.+ ....++.+||..|||.|.-.+.+|.+|.+|+++|++ +.+++.+.+ |.. .+. ...
T Consensus 15 ~~w~~~~~~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls--~~Ai~~~~~e~~~~~~~~~~~~~ 91 (218)
T PF05724_consen 15 TPWDQGEPNPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLS--PTAIEQAFEENNLEPTVTSVGGF 91 (218)
T ss_dssp -TT--TTSTHHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES---HHHHHHHHHHCTTEEECTTCTTE
T ss_pred CCCCCCCCCHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecC--HHHHHHHHHHhccCCCcccccce
Confidence 443333446778888876 233456799999999999999999999999999999 458877632 221 110 111
Q ss_pred e-----EEEEEcCCCCcCCCC--CCCcEEEEcCcCC--CCCChHHHHHHHHHhccCC
Q 030935 122 R-----VMGLTWGFLDASIFD--LNPNIILGADVFY--DASGKICAFEILICSLFPI 169 (169)
Q Consensus 122 ~-----~~~l~~~~~~~~~~~--~~fDlIi~sd~iy--~~~~~~~l~~~l~~~L~p~ 169 (169)
. -+.+..+++...... .+||+|+=.-++. .++.-+.-.+.+.++|+|+
T Consensus 92 ~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~ 148 (218)
T PF05724_consen 92 KRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPG 148 (218)
T ss_dssp EEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEE
T ss_pred eeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCC
Confidence 0 123555665442222 2799999444443 5566788899999999885
No 186
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.40 E-value=1.5e-06 Score=71.23 Aligned_cols=119 Identities=13% Similarity=0.026 Sum_probs=76.1
Q ss_pred eeecchHHHHHHHHHhccCCCCCCeEEEECCCCCH-HHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHH-h------CCc
Q 030935 49 LFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSL-PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM-N------KLN 120 (169)
Q Consensus 49 ~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl-~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~-n------~~~ 120 (169)
+.-|--+.++..|+.......++.+|||||||-|. +.-+....-..++++|++ ...++.|++..+. . ...
T Consensus 41 fNNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis--~~si~ea~~Ry~~~~~~~~~~~~~ 118 (331)
T PF03291_consen 41 FNNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDIS--EESIEEARERYKQLKKRNNSKQYR 118 (331)
T ss_dssp HHHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES---HHHHHHHHHHHHHHHTSTT-HTSE
T ss_pred HhHHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCC--HHHHHHHHHHHHHhcccccccccc
Confidence 45688899999988755444477899999999664 555655444589999999 5699998887722 1 111
Q ss_pred ce-EEEEEcCCCCc-----CCCC--CCCcEEEEcCcCCCC----CChHHHHHHHHHhccCC
Q 030935 121 CR-VMGLTWGFLDA-----SIFD--LNPNIILGADVFYDA----SGKICAFEILICSLFPI 169 (169)
Q Consensus 121 ~~-~~~l~~~~~~~-----~~~~--~~fDlIi~sd~iy~~----~~~~~l~~~l~~~L~p~ 169 (169)
.. ......++... ...+ .+||+|-|--.+|+. +....+++.+...|+||
T Consensus 119 ~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~G 179 (331)
T PF03291_consen 119 FDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPG 179 (331)
T ss_dssp ECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred ccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Confidence 11 12223333221 1222 499999999999855 44667999999999986
No 187
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.35 E-value=4.2e-06 Score=63.82 Aligned_cols=95 Identities=15% Similarity=0.031 Sum_probs=69.0
Q ss_pred eEEEECCCCCHHHHHHHHhCC--eEEEEcCCCcHHHHHHHHHHHHHhCCcc--eEEEEEcCCCCcCC------CCCCCcE
Q 030935 73 NVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNC--RVMGLTWGFLDASI------FDLNPNI 142 (169)
Q Consensus 73 ~vLElGcGtGl~~l~~a~~ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~~--~~~~l~~~~~~~~~------~~~~fDl 142 (169)
+|||||||||--+..+|+.-. .-.-+|.++ ..+..++..+...+++. ....++......+. ...+||.
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~--~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDD--NLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCCh--HHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 699999999999999998654 677888884 46677777776665431 12334443321121 2458999
Q ss_pred EEEcCcCCCC--CChHHHHHHHHHhccCC
Q 030935 143 ILGADVFYDA--SGKICAFEILICSLFPI 169 (169)
Q Consensus 143 Ii~sd~iy~~--~~~~~l~~~l~~~L~p~ 169 (169)
|+|+.++|-. +..+.+|+...+.|+|+
T Consensus 106 i~~~N~lHI~p~~~~~~lf~~a~~~L~~g 134 (204)
T PF06080_consen 106 IFCINMLHISPWSAVEGLFAGAARLLKPG 134 (204)
T ss_pred eeehhHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 9999999944 56788999999999985
No 188
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=98.35 E-value=1e-05 Score=63.07 Aligned_cols=119 Identities=18% Similarity=0.146 Sum_probs=78.7
Q ss_pred CCcceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCcce
Q 030935 45 EEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCR 122 (169)
Q Consensus 45 ~~~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~ 122 (169)
-+-+..+++.+..-+.||.++. .+.|++||=+| =-=+.|++++..+ ++|+++|+++ ++++.+++.++..+++++
T Consensus 20 ~DQ~~~T~eT~~~Ra~~~~~~g-dL~gk~il~lG-DDDLtSlA~al~~~~~~I~VvDiDe--Rll~fI~~~a~~~gl~i~ 95 (243)
T PF01861_consen 20 LDQGYATPETTLRRAALMAERG-DLEGKRILFLG-DDDLTSLALALTGLPKRITVVDIDE--RLLDFINRVAEEEGLPIE 95 (243)
T ss_dssp GT---B-HHHHHHHHHHHHHTT--STT-EEEEES--TT-HHHHHHHHT--SEEEEE-S-H--HHHHHHHHHHHHHT--EE
T ss_pred cccccccHHHHHHHHHHHHhcC-cccCCEEEEEc-CCcHHHHHHHhhCCCCeEEEEEcCH--HHHHHHHHHHHHcCCceE
Confidence 4568899999999999999875 46899999998 3347777777644 5899999995 599999999999999877
Q ss_pred EEEEEcCCCCcCCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccC
Q 030935 123 VMGLTWGFLDASIFDLNPNIILGADVFYDASGKICAFEILICSLFP 168 (169)
Q Consensus 123 ~~~l~~~~~~~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p 168 (169)
....+..+...+....+||+++. |+.|..+-+.-++..-.++|+.
T Consensus 96 ~~~~DlR~~LP~~~~~~fD~f~T-DPPyT~~G~~LFlsRgi~~Lk~ 140 (243)
T PF01861_consen 96 AVHYDLRDPLPEELRGKFDVFFT-DPPYTPEGLKLFLSRGIEALKG 140 (243)
T ss_dssp EE---TTS---TTTSS-BSEEEE----SSHHHHHHHHHHHHHTB-S
T ss_pred EEEecccccCCHHHhcCCCEEEe-CCCCCHHHHHHHHHHHHHHhCC
Confidence 66666554433334469999995 9999999999999999888874
No 189
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.33 E-value=7.9e-06 Score=60.33 Aligned_cols=113 Identities=19% Similarity=0.131 Sum_probs=79.8
Q ss_pred eecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC---eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEE
Q 030935 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGL 126 (169)
Q Consensus 50 ~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga---~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l 126 (169)
.+-|++-.+|+-|.+..+...|.-|||+|.|||.++-.+.++|. .+++++++ ++.+....+... ..++.+.
T Consensus 28 aI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~--~dF~~~L~~~~p----~~~ii~g 101 (194)
T COG3963 28 AILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYS--PDFVCHLNQLYP----GVNIING 101 (194)
T ss_pred eecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeC--HHHHHHHHHhCC----Ccccccc
Confidence 45688999999999988888899999999999999999999875 69999999 568776654332 2223333
Q ss_pred EcCCCC---cCCCCCCCcEEEEcCcCCCCCCh--HHHHHHHHHhccC
Q 030935 127 TWGFLD---ASIFDLNPNIILGADVFYDASGK--ICAFEILICSLFP 168 (169)
Q Consensus 127 ~~~~~~---~~~~~~~fDlIi~sd~iy~~~~~--~~l~~~l~~~L~p 168 (169)
+..+.. .......||.|||.=++-+.... -++++.+...|.+
T Consensus 102 da~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~ 148 (194)
T COG3963 102 DAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPA 148 (194)
T ss_pred chhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCC
Confidence 333322 12234589999998877655433 4466666666554
No 190
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.32 E-value=8.2e-07 Score=68.71 Aligned_cols=94 Identities=10% Similarity=0.010 Sum_probs=73.0
Q ss_pred CCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCcC
Q 030935 71 GANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVF 149 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~i 149 (169)
...++|||||-|.+.-.+...+. +++.+|.+ ..|++.++. ++.+++... .+.-++....+.++++|+||+|--+
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS--~~M~~s~~~-~qdp~i~~~--~~v~DEE~Ldf~ens~DLiisSlsl 147 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTS--YDMIKSCRD-AQDPSIETS--YFVGDEEFLDFKENSVDLIISSLSL 147 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecc--hHHHHHhhc-cCCCceEEE--EEecchhcccccccchhhhhhhhhh
Confidence 35799999999999998888776 89999999 569988876 333444332 2222222224556799999999999
Q ss_pred CCCCChHHHHHHHHHhccCC
Q 030935 150 YDASGKICAFEILICSLFPI 169 (169)
Q Consensus 150 y~~~~~~~l~~~l~~~L~p~ 169 (169)
||..+++.-+..++..|||.
T Consensus 148 HW~NdLPg~m~~ck~~lKPD 167 (325)
T KOG2940|consen 148 HWTNDLPGSMIQCKLALKPD 167 (325)
T ss_pred hhhccCchHHHHHHHhcCCC
Confidence 99999999999999999994
No 191
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=6.2e-06 Score=65.15 Aligned_cols=89 Identities=16% Similarity=0.122 Sum_probs=62.0
Q ss_pred HHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCC
Q 030935 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDL 138 (169)
Q Consensus 59 a~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~ 138 (169)
.+.+.......++..|||+|+|.|.++..+++.+++|++++++ +++++.+++... ...+.+ +.++|......+.
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD--~~l~~~L~~~~~-~~~n~~---vi~~DaLk~d~~~ 92 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEID--RRLAEVLKERFA-PYDNLT---VINGDALKFDFPS 92 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeC--HHHHHHHHHhcc-cccceE---EEeCchhcCcchh
Confidence 4455555555567899999999999999999999999999999 469988887664 111222 4455544333333
Q ss_pred --CCcEEEEcCcCCCCCC
Q 030935 139 --NPNIILGADVFYDASG 154 (169)
Q Consensus 139 --~fDlIi~sd~iy~~~~ 154 (169)
.++.|++ .+-|+.+.
T Consensus 93 l~~~~~vVa-NlPY~Iss 109 (259)
T COG0030 93 LAQPYKVVA-NLPYNISS 109 (259)
T ss_pred hcCCCEEEE-cCCCcccH
Confidence 6788886 55665543
No 192
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.26 E-value=1e-05 Score=63.95 Aligned_cols=101 Identities=12% Similarity=0.119 Sum_probs=65.8
Q ss_pred cceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEE
Q 030935 47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGL 126 (169)
Q Consensus 47 ~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l 126 (169)
.|-++-..+.++...+. .....+...|||+|-|||.++..+...|++|+++++++ .|+...++..+-...+...+ +
T Consensus 36 ~GQHilkNp~v~~~I~~-ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dp--rmvael~krv~gtp~~~kLq-V 111 (315)
T KOG0820|consen 36 FGQHILKNPLVIDQIVE-KADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDP--RMVAELEKRVQGTPKSGKLQ-V 111 (315)
T ss_pred cchhhhcCHHHHHHHHh-ccCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCc--HHHHHHHHHhcCCCccceee-E
Confidence 44444444444444443 34455677999999999999999999999999999995 59998887775333323333 2
Q ss_pred EcCCCCcCCCCCCCcEEEEcCcCCCCC
Q 030935 127 TWGFLDASIFDLNPNIILGADVFYDAS 153 (169)
Q Consensus 127 ~~~~~~~~~~~~~fDlIi~sd~iy~~~ 153 (169)
..|+... .....||++|+ .+-|..+
T Consensus 112 ~~gD~lK-~d~P~fd~cVs-NlPyqIS 136 (315)
T KOG0820|consen 112 LHGDFLK-TDLPRFDGCVS-NLPYQIS 136 (315)
T ss_pred Eeccccc-CCCcccceeec-cCCcccc
Confidence 2344322 12237898886 4444443
No 193
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.23 E-value=1.3e-05 Score=65.52 Aligned_cols=83 Identities=16% Similarity=0.063 Sum_probs=52.9
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcC
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGAD 147 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd 147 (169)
..+|.++|||||++|..+..++++|++|+++|..+ |-..+ . +.. ++..+.-..+.......++|+++| |
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~---l~~~L----~-~~~--~V~h~~~d~fr~~p~~~~vDwvVc-D 277 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP---MAQSL----M-DTG--QVEHLRADGFKFRPPRKNVDWLVC-D 277 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh---cCHhh----h-CCC--CEEEEeccCcccCCCCCCCCEEEE-e
Confidence 35788999999999999999999999999999763 33222 1 112 233333333221111458999998 6
Q ss_pred cCCCCCChHHHHHH
Q 030935 148 VFYDASGKICAFEI 161 (169)
Q Consensus 148 ~iy~~~~~~~l~~~ 161 (169)
++-.+.-...++..
T Consensus 278 mve~P~rva~lm~~ 291 (357)
T PRK11760 278 MVEKPARVAELMAQ 291 (357)
T ss_pred cccCHHHHHHHHHH
Confidence 66555444444433
No 194
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.20 E-value=2.7e-06 Score=66.15 Aligned_cols=95 Identities=15% Similarity=0.064 Sum_probs=68.6
Q ss_pred eEEEECCCCCHHHHHHHHhC----CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcC--CCCcCCCCCCCcEEEEc
Q 030935 73 NVVELGAGTSLPGLVAAKVG----SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWG--FLDASIFDLNPNIILGA 146 (169)
Q Consensus 73 ~vLElGcGtGl~~l~~a~~g----a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~--~~~~~~~~~~fDlIi~s 146 (169)
+|||+|||.|-....+.+-. -.|.+.|.+ +++++..+.|...+...+.....+.. ....+.....+|+|.+-
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfs--p~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFS--PRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCC--hHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEE
Confidence 79999999998888877743 379999999 56999999887655433322222221 22233445689999876
Q ss_pred CcCC--CCCChHHHHHHHHHhccCC
Q 030935 147 DVFY--DASGKICAFEILICSLFPI 169 (169)
Q Consensus 147 d~iy--~~~~~~~l~~~l~~~L~p~ 169 (169)
=++- +++.....++.|...||||
T Consensus 152 FvLSAi~pek~~~a~~nl~~llKPG 176 (264)
T KOG2361|consen 152 FVLSAIHPEKMQSVIKNLRTLLKPG 176 (264)
T ss_pred EEEeccChHHHHHHHHHHHHHhCCC
Confidence 6554 4567788999999999997
No 195
>PLN02823 spermine synthase
Probab=98.18 E-value=1.1e-05 Score=66.34 Aligned_cols=95 Identities=22% Similarity=0.229 Sum_probs=64.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhC--C-cceEEEEEcCCCCcC--CCCCCCcE
Q 030935 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNK--L-NCRVMGLTWGFLDAS--IFDLNPNI 142 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~--~-~~~~~~l~~~~~~~~--~~~~~fDl 142 (169)
..++||.||+|.|..+..+++.. .+|+++|++ +++++.+++....++ . +.++ .+..++.... ..+.+||+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD--~~vv~lar~~~~~~~~~~~dprv-~v~~~Da~~~L~~~~~~yDv 179 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDID--QEVVDFCRKHLTVNREAFCDKRL-ELIINDARAELEKRDEKFDV 179 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECC--HHHHHHHHHhcccccccccCCce-EEEEChhHHHHhhCCCCccE
Confidence 45689999999999998887753 389999999 569999999876542 1 1222 2334433221 12458999
Q ss_pred EEEcCcCCCCC--------ChHHHHH-HHHHhccCC
Q 030935 143 ILGADVFYDAS--------GKICAFE-ILICSLFPI 169 (169)
Q Consensus 143 Ii~sd~iy~~~--------~~~~l~~-~l~~~L~p~ 169 (169)
|+. |+. ++. .-..+++ .+++.|+|+
T Consensus 180 Ii~-D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~ 213 (336)
T PLN02823 180 IIG-DLA-DPVEGGPCYQLYTKSFYERIVKPKLNPG 213 (336)
T ss_pred EEe-cCC-CccccCcchhhccHHHHHHHHHHhcCCC
Confidence 996 542 221 1246787 899999985
No 196
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.16 E-value=2.8e-05 Score=69.72 Aligned_cols=112 Identities=13% Similarity=0.062 Sum_probs=73.9
Q ss_pred cchHHHHHHHHHhccCC-CCCCeEEEECCCCCHHHHHHHHhC--------------------------------------
Q 030935 52 WPCSVILAEYVWQQRYR-FSGANVVELGAGTSLPGLVAAKVG-------------------------------------- 92 (169)
Q Consensus 52 W~~~~~La~~l~~~~~~-~~~~~vLElGcGtGl~~l~~a~~g-------------------------------------- 92 (169)
-|--..||.-|+..... ..+..++|-+||+|.+.+.+|..+
T Consensus 171 Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~ 250 (702)
T PRK11783 171 APLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARA 250 (702)
T ss_pred CCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhh
Confidence 34456777766655433 356789999999999999887631
Q ss_pred ------CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC---CCCCCCcEEEEcCcCCCC----CChHHHH
Q 030935 93 ------SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS---IFDLNPNIILGADVFYDA----SGKICAF 159 (169)
Q Consensus 93 ------a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~---~~~~~fDlIi~sd~iy~~----~~~~~l~ 159 (169)
.+++++|++ +.+++.++.|+..+++...+. +..++.... ....+||+|+++.+.-.. .....+.
T Consensus 251 ~~~~~~~~i~G~Did--~~av~~A~~N~~~~g~~~~i~-~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY 327 (702)
T PRK11783 251 GLAELPSKFYGSDID--PRVIQAARKNARRAGVAELIT-FEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALY 327 (702)
T ss_pred cccccCceEEEEECC--HHHHHHHHHHHHHcCCCcceE-EEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHH
Confidence 269999999 569999999999999864332 334443221 112369999987555422 2344555
Q ss_pred HHHHHhc
Q 030935 160 EILICSL 166 (169)
Q Consensus 160 ~~l~~~L 166 (169)
+.+-+.|
T Consensus 328 ~~lg~~l 334 (702)
T PRK11783 328 SQLGRRL 334 (702)
T ss_pred HHHHHHH
Confidence 5544444
No 197
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.14 E-value=2.8e-05 Score=58.61 Aligned_cols=88 Identities=19% Similarity=0.258 Sum_probs=58.8
Q ss_pred eEEEECCCCCHHHHHHHHhCC--eEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCcCCCCCCCcEEEEcCcC
Q 030935 73 NVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASIFDLNPNIILGADVF 149 (169)
Q Consensus 73 ~vLElGcGtGl~~l~~a~~ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~~~~~~~fDlIi~sd~i 149 (169)
+++|+|+|.|++|+.+|-... +|+.+|...+ =+...+.-+..-+++ +++. .+..+......+||+|++--+-
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~K--K~~FL~~~~~~L~L~nv~v~---~~R~E~~~~~~~fd~v~aRAv~ 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGK--KVAFLKEVVRELGLSNVEVI---NGRAEEPEYRESFDVVTARAVA 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHH--HHHHHHHHHHHHT-SSEEEE---ES-HHHTTTTT-EEEEEEESSS
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCch--HHHHHHHHHHHhCCCCEEEE---EeeecccccCCCccEEEeehhc
Confidence 799999999999999887643 8999999853 444444444444454 3333 3333333455699999997654
Q ss_pred CCCCChHHHHHHHHHhccCC
Q 030935 150 YDASGKICAFEILICSLFPI 169 (169)
Q Consensus 150 y~~~~~~~l~~~l~~~L~p~ 169 (169)
.++.+++.....|+|+
T Consensus 126 ----~l~~l~~~~~~~l~~~ 141 (184)
T PF02527_consen 126 ----PLDKLLELARPLLKPG 141 (184)
T ss_dssp ----SHHHHHHHHGGGEEEE
T ss_pred ----CHHHHHHHHHHhcCCC
Confidence 5788888888877763
No 198
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.12 E-value=7.7e-06 Score=66.11 Aligned_cols=93 Identities=12% Similarity=0.066 Sum_probs=60.3
Q ss_pred HHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh---------CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEE
Q 030935 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---------GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGL 126 (169)
Q Consensus 56 ~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~---------ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l 126 (169)
..++++|.+.....++.+|+|-.||+|.+-+.+.+. ..++++.|++ +.++..++.|+..++........
T Consensus 32 ~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~--~~~~~la~~nl~l~~~~~~~~~i 109 (311)
T PF02384_consen 32 REIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEID--PEAVALAKLNLLLHGIDNSNINI 109 (311)
T ss_dssp HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES---HHHHHHHHHHHHHTTHHCBGCEE
T ss_pred HHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCc--HHHHHHHHhhhhhhccccccccc
Confidence 456667666655556778999999999988877662 3489999999 56999999998887765432224
Q ss_pred EcCCCCcCC-C--CCCCcEEEEcCcCC
Q 030935 127 TWGFLDASI-F--DLNPNIILGADVFY 150 (169)
Q Consensus 127 ~~~~~~~~~-~--~~~fDlIi~sd~iy 150 (169)
.+++..... . ..+||+|+++.++-
T Consensus 110 ~~~d~l~~~~~~~~~~~D~ii~NPPf~ 136 (311)
T PF02384_consen 110 IQGDSLENDKFIKNQKFDVIIGNPPFG 136 (311)
T ss_dssp EES-TTTSHSCTST--EEEEEEE--CT
T ss_pred cccccccccccccccccccccCCCCcc
Confidence 455543221 1 35899999987653
No 199
>PRK00536 speE spermidine synthase; Provisional
Probab=98.09 E-value=6.8e-05 Score=59.54 Aligned_cols=90 Identities=11% Similarity=-0.111 Sum_probs=64.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHh--CC-cceEEEEEcCCCCcCCCCCCCcEEEEc
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN--KL-NCRVMGLTWGFLDASIFDLNPNIILGA 146 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n--~~-~~~~~~l~~~~~~~~~~~~~fDlIi~s 146 (169)
..++||=+|.|-|.....++|...+|+++|++ +++++.+++-+... .. +.++....|- ......+||+||.
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID--~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~---~~~~~~~fDVIIv- 145 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYDTHVDFVQAD--EKILDSFISFFPHFHEVKNNKNFTHAKQL---LDLDIKKYDLIIC- 145 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcCCeeEEEECC--HHHHHHHHHHCHHHHHhhcCCCEEEeehh---hhccCCcCCEEEE-
Confidence 45799999999999999999986799999999 46999988843211 11 2233322221 1112358999995
Q ss_pred CcCCCCCChHHHHHHHHHhccCC
Q 030935 147 DVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 147 d~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
|..|. +.+++.++++|+|+
T Consensus 146 Ds~~~----~~fy~~~~~~L~~~ 164 (262)
T PRK00536 146 LQEPD----IHKIDGLKRMLKED 164 (262)
T ss_pred cCCCC----hHHHHHHHHhcCCC
Confidence 77654 67788999999985
No 200
>PRK10742 putative methyltransferase; Provisional
Probab=98.06 E-value=2.9e-05 Score=60.92 Aligned_cols=86 Identities=16% Similarity=0.127 Sum_probs=60.2
Q ss_pred CCCC--eEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHh------CCcc-eEEEEEcCCCCcCC--CC
Q 030935 69 FSGA--NVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN------KLNC-RVMGLTWGFLDASI--FD 137 (169)
Q Consensus 69 ~~~~--~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n------~~~~-~~~~l~~~~~~~~~--~~ 137 (169)
.+|. +|||+-+|+|..|+.++.+|++|+++|.+ +.+...+++|++.- +... ....+..++....+ ..
T Consensus 85 k~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~--p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~ 162 (250)
T PRK10742 85 KGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERN--PVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT 162 (250)
T ss_pred CCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECC--HHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCC
Confidence 3455 89999999999999999999999999999 55888899988763 1100 11233334322211 23
Q ss_pred CCCcEEEEcCcCCCCCChHH
Q 030935 138 LNPNIILGADVFYDASGKIC 157 (169)
Q Consensus 138 ~~fDlIi~sd~iy~~~~~~~ 157 (169)
..||+|.. |+.|-...-.+
T Consensus 163 ~~fDVVYl-DPMfp~~~ksa 181 (250)
T PRK10742 163 PRPQVVYL-DPMFPHKQKSA 181 (250)
T ss_pred CCCcEEEE-CCCCCCCcccc
Confidence 37999995 99997655444
No 201
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.05 E-value=6.7e-06 Score=61.88 Aligned_cols=71 Identities=17% Similarity=0.182 Sum_probs=52.7
Q ss_pred CCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCcCCCCCCCcEEEEcC
Q 030935 71 GANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASIFDLNPNIILGAD 147 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~~~~~~~fDlIi~sd 147 (169)
...+-|||+|+|+++..+|+...+|++++.++ .-...+++|++.++.. ..+.. |+...--+ ++.|+|+|-.
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dP--k~a~~a~eN~~v~g~~n~evv~---gDA~~y~f-e~ADvvicEm 104 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDP--KRARLAEENLHVPGDVNWEVVV---GDARDYDF-ENADVVICEM 104 (252)
T ss_pred hhceeeccCCcchHHHHHHhhhceEEEEecCc--HHHHHhhhcCCCCCCcceEEEe---cccccccc-cccceeHHHH
Confidence 35899999999999999999966999999995 5889999999888764 23322 33222112 4678898743
No 202
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=3.3e-05 Score=59.03 Aligned_cols=107 Identities=14% Similarity=0.092 Sum_probs=69.8
Q ss_pred hHHHHHHHHHhccC--CCCCCeEEEECCCCCHHHHHHHHh-CC---eEEEEcCCCcHHHHHHHHHHHHHhC--------C
Q 030935 54 CSVILAEYVWQQRY--RFSGANVVELGAGTSLPGLVAAKV-GS---NVTLTDDSNRIEVLKNMRRVCEMNK--------L 119 (169)
Q Consensus 54 ~~~~La~~l~~~~~--~~~~~~vLElGcGtGl~~l~~a~~-ga---~V~~~D~~~~~~~l~~~~~n~~~n~--------~ 119 (169)
++..+-.++.+... ..+|.+.||+|+|||.++.+++.+ |+ .++++|.- +++++.+++|+...- +
T Consensus 64 SAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~--~eLVe~Sk~nl~k~i~~~e~~~~~ 141 (237)
T KOG1661|consen 64 SAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHI--PELVEYSKKNLDKDITTSESSSKL 141 (237)
T ss_pred cchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhh--HHHHHHHHHHHHhhccCchhhhhh
Confidence 44444444444333 568999999999999999888864 33 45899988 679999999986542 1
Q ss_pred -cceEEEEEcCCCCcCCC-CCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 120 -NCRVMGLTWGFLDASIF-DLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 120 -~~~~~~l~~~~~~~~~~-~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.+++. +.-|+-..... ..+||-|.+- +....+.+.+...|+|+
T Consensus 142 ~~~~l~-ivvGDgr~g~~e~a~YDaIhvG------Aaa~~~pq~l~dqL~~g 186 (237)
T KOG1661|consen 142 KRGELS-IVVGDGRKGYAEQAPYDAIHVG------AAASELPQELLDQLKPG 186 (237)
T ss_pred ccCceE-EEeCCccccCCccCCcceEEEc------cCccccHHHHHHhhccC
Confidence 12222 22444433222 3489999875 45566667777777764
No 203
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.04 E-value=4.2e-05 Score=59.47 Aligned_cols=109 Identities=20% Similarity=0.149 Sum_probs=72.4
Q ss_pred eeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEE
Q 030935 49 LFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLT 127 (169)
Q Consensus 49 ~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~ 127 (169)
..+-.+++.|...+....-..+|+.|||+|+-||.++..+.+.|| +|+++|...+ -+.. .++ + +.++..+.
T Consensus 58 ~yVSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~--Ql~~---kLR-~--d~rV~~~E 129 (245)
T COG1189 58 PYVSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYG--QLHW---KLR-N--DPRVIVLE 129 (245)
T ss_pred CccccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCC--ccCH---hHh-c--CCcEEEEe
Confidence 445567889999998887778999999999999999999999998 7999999864 2211 111 1 22333343
Q ss_pred cCCCCc---CCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccC
Q 030935 128 WGFLDA---SIFDLNPNIILGADVFYDASGKICAFEILICSLFP 168 (169)
Q Consensus 128 ~~~~~~---~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p 168 (169)
-.+... ......+|+|++ |+=| -++..++..+...++|
T Consensus 130 ~tN~r~l~~~~~~~~~d~~v~-DvSF--ISL~~iLp~l~~l~~~ 170 (245)
T COG1189 130 RTNVRYLTPEDFTEKPDLIVI-DVSF--ISLKLILPALLLLLKD 170 (245)
T ss_pred cCChhhCCHHHcccCCCeEEE-Eeeh--hhHHHHHHHHHHhcCC
Confidence 333321 122337889997 4433 2355566666666655
No 204
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.04 E-value=4.1e-05 Score=59.01 Aligned_cols=89 Identities=18% Similarity=0.232 Sum_probs=58.3
Q ss_pred CCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCcCCCCCC-CcEEEEc
Q 030935 71 GANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASIFDLN-PNIILGA 146 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~~~~~~~-fDlIi~s 146 (169)
+++++|+|+|.|++|+.+|-.. .+|+.+|...+ =+...+.-.+.-+++ +++. .+..+......+ ||+|.|-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~K--k~~FL~~~~~eL~L~nv~i~---~~RaE~~~~~~~~~D~vtsR 142 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGK--KIAFLREVKKELGLENVEIV---HGRAEEFGQEKKQYDVVTSR 142 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCch--HHHHHHHHHHHhCCCCeEEe---hhhHhhcccccccCcEEEee
Confidence 6899999999999999988543 37999999864 344444444444444 3333 233322222224 9999986
Q ss_pred CcCCCCCChHHHHHHHHHhccC
Q 030935 147 DVFYDASGKICAFEILICSLFP 168 (169)
Q Consensus 147 d~iy~~~~~~~l~~~l~~~L~p 168 (169)
-+ ..+..+++.+...+++
T Consensus 143 Av----a~L~~l~e~~~pllk~ 160 (215)
T COG0357 143 AV----ASLNVLLELCLPLLKV 160 (215)
T ss_pred hc----cchHHHHHHHHHhccc
Confidence 53 5577788887777776
No 205
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.03 E-value=2.3e-05 Score=60.12 Aligned_cols=117 Identities=15% Similarity=0.119 Sum_probs=60.7
Q ss_pred CcceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHH-hCC-eEEEEcCCCcHHHHHHHHHHHH-------H
Q 030935 46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRRVCE-------M 116 (169)
Q Consensus 46 ~~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~-~ga-~V~~~D~~~~~~~l~~~~~n~~-------~ 116 (169)
.||=..++. +++.+ ......++...+|||||.|-+-+.+|. .+. +++++++.+ ...+.++.+.+ .
T Consensus 22 ~YGEi~~~~---~~~il-~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~--~~~~~a~~~~~~~~~~~~~ 95 (205)
T PF08123_consen 22 TYGEISPEF---VSKIL-DELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILP--ELHDLAEELLEELKKRMKH 95 (205)
T ss_dssp CGGGCHHHH---HHHHH-HHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SH--HHHHHHHHHHHHHHHHHHH
T ss_pred ceeecCHHH---HHHHH-HHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEech--HHHHHHHHHHHHHHHHHHH
Confidence 455554443 23333 333455677999999999988776654 555 699999995 45554444332 2
Q ss_pred hCCcceEEEEEcCCCCcCCC-C---CCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 117 NKLNCRVMGLTWGFLDASIF-D---LNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 117 n~~~~~~~~l~~~~~~~~~~-~---~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.+....-..+..+++..... . ..-|+|+++..+|.++....+ +.+...||||
T Consensus 96 ~g~~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F~~~l~~~L-~~~~~~lk~G 151 (205)
T PF08123_consen 96 YGKRPGKVELIHGDFLDPDFVKDIWSDADVVFVNNTCFDPDLNLAL-AELLLELKPG 151 (205)
T ss_dssp CTB---EEEEECS-TTTHHHHHHHGHC-SEEEE--TTT-HHHHHHH-HHHHTTS-TT
T ss_pred hhcccccceeeccCccccHhHhhhhcCCCEEEEeccccCHHHHHHH-HHHHhcCCCC
Confidence 33333333455666543211 1 257999999999977766666 4555667775
No 206
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.03 E-value=2.7e-05 Score=55.54 Aligned_cols=55 Identities=18% Similarity=0.268 Sum_probs=44.2
Q ss_pred eEEEECCCCCHHHHHHHHhCC--eEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcC
Q 030935 73 NVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWG 129 (169)
Q Consensus 73 ~vLElGcGtGl~~l~~a~~ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~ 129 (169)
.+||+|||.|..++.+++.+. +|+++|.+ +.+++.+++|++.|+.. +.+.....+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~--~~~~~~l~~~~~~n~~~~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPL--PDAYEILEENVKLNNLPNVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecC--HHHHHHHHHHHHHcCCCcEEEEEeeee
Confidence 489999999999999998876 69999999 56999999999988753 344333333
No 207
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.01 E-value=3.6e-05 Score=55.40 Aligned_cols=48 Identities=17% Similarity=0.152 Sum_probs=39.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHH------hCCeEEEEcCCCcHHHHHHHHHHHHHhC
Q 030935 69 FSGANVVELGAGTSLPGLVAAK------VGSNVTLTDDSNRIEVLKNMRRVCEMNK 118 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~------~ga~V~~~D~~~~~~~l~~~~~n~~~n~ 118 (169)
.+...|+|+|||.|.+|..++. .+.+|+++|.++ ..++.+++..+..+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~--~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNE--SLVESAQKRAQKLG 77 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCc--HHHHHHHHHHHHhc
Confidence 4567899999999999999988 345999999995 48887777766554
No 208
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=97.97 E-value=3.7e-05 Score=62.27 Aligned_cols=111 Identities=20% Similarity=0.134 Sum_probs=72.2
Q ss_pred ecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhC-------Ccce
Q 030935 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNK-------LNCR 122 (169)
Q Consensus 51 ~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~-------~~~~ 122 (169)
-|--+.++-.|+. ++..+++||||-|.=.+---+.|. .++++|+.+. .++.|+..-+... ....
T Consensus 104 NwIKs~LI~~y~~------~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAev--SI~qa~~RYrdm~~r~~~~~f~a~ 175 (389)
T KOG1975|consen 104 NWIKSVLINLYTK------RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEV--SINQARKRYRDMKNRFKKFIFTAV 175 (389)
T ss_pred HHHHHHHHHHHhc------cccccceeccCCcccHhHhhhhcccceEeeehhhc--cHHHHHHHHHHHHhhhhcccceeE
Confidence 3444444444432 567899999999977666666665 7999999965 8888887654321 1122
Q ss_pred EEEEEcCCCC--c--CCCCCCCcEEEEcCcCCCC----CChHHHHHHHHHhccCC
Q 030935 123 VMGLTWGFLD--A--SIFDLNPNIILGADVFYDA----SGKICAFEILICSLFPI 169 (169)
Q Consensus 123 ~~~l~~~~~~--~--~~~~~~fDlIi~sd~iy~~----~~~~~l~~~l~~~L~p~ 169 (169)
+...+..... . +..+.+||+|-|-=++|+. +...-+++.+...|+||
T Consensus 176 f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpG 230 (389)
T KOG1975|consen 176 FIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPG 230 (389)
T ss_pred EEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCC
Confidence 2222221100 0 1123359999999888754 55677999999999997
No 209
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.96 E-value=6.2e-05 Score=58.58 Aligned_cols=96 Identities=15% Similarity=-0.036 Sum_probs=69.7
Q ss_pred CeEEEECCCCCHHHHHHHHhCC--eEEEEcCCCcHHHHHHHHHHHHHhCC-cceEEEEEcCCCCcCCCCC-CCcEEE--E
Q 030935 72 ANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDL-NPNIIL--G 145 (169)
Q Consensus 72 ~~vLElGcGtGl~~l~~a~~ga--~V~~~D~~~~~~~l~~~~~n~~~n~~-~~~~~~l~~~~~~~~~~~~-~fDlIi--~ 145 (169)
..+||||||.|-.-+.+|+... .++++|+.. ..+..+.+.+...++ ++++...+.........+. +.|=|. -
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~--~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~F 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRV--PGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINF 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEeh--HHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEEC
Confidence 4799999999999999999876 699999995 478888888888888 6665555544444444444 666554 3
Q ss_pred cCcCCCC------CChHHHHHHHHHhccCC
Q 030935 146 ADVFYDA------SGKICAFEILICSLFPI 169 (169)
Q Consensus 146 sd~iy~~------~~~~~l~~~l~~~L~p~ 169 (169)
.|+-+-. -..+.+++.+++.|+|+
T Consensus 128 PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~g 157 (227)
T COG0220 128 PDPWPKKRHHKRRLTQPEFLKLYARKLKPG 157 (227)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHccCC
Confidence 4444421 12588999999999986
No 210
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.95 E-value=6.1e-05 Score=59.72 Aligned_cols=103 Identities=17% Similarity=0.189 Sum_probs=65.2
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS 134 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~ 134 (169)
...+++.+.+..+..++..|||+|+|+|.++..+++.+.+|+++|.+ +++++.+++... ...++++..-+.-.+...
T Consensus 15 ~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d--~~~~~~L~~~~~-~~~~~~vi~~D~l~~~~~ 91 (262)
T PF00398_consen 15 DPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEID--PDLAKHLKERFA-SNPNVEVINGDFLKWDLY 91 (262)
T ss_dssp HHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESS--HHHHHHHHHHCT-TCSSEEEEES-TTTSCGG
T ss_pred CHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccCcceeecCc--HhHHHHHHHHhh-hcccceeeecchhccccH
Confidence 44556666666555578899999999999999999999999999999 568888887665 233333333222222111
Q ss_pred C-CCCCCcEEEEcCcCCCCCChHHHHHHHH
Q 030935 135 I-FDLNPNIILGADVFYDASGKICAFEILI 163 (169)
Q Consensus 135 ~-~~~~fDlIi~sd~iy~~~~~~~l~~~l~ 163 (169)
. .......|+++ +-|+. -.+++..+.
T Consensus 92 ~~~~~~~~~vv~N-lPy~i--s~~il~~ll 118 (262)
T PF00398_consen 92 DLLKNQPLLVVGN-LPYNI--SSPILRKLL 118 (262)
T ss_dssp GHCSSSEEEEEEE-ETGTG--HHHHHHHHH
T ss_pred HhhcCCceEEEEE-ecccc--hHHHHHHHh
Confidence 0 11244577765 55532 234444444
No 211
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.94 E-value=9e-06 Score=61.91 Aligned_cols=94 Identities=21% Similarity=0.127 Sum_probs=53.7
Q ss_pred CCeEEEECCCCCH--HHH--HHHHh-----C--CeEEEEcCCCcHHHHHHHHHHHH----HhCC----------------
Q 030935 71 GANVVELGAGTSL--PGL--VAAKV-----G--SNVTLTDDSNRIEVLKNMRRVCE----MNKL---------------- 119 (169)
Q Consensus 71 ~~~vLElGcGtGl--~~l--~~a~~-----g--a~V~~~D~~~~~~~l~~~~~n~~----~n~~---------------- 119 (169)
.-+|+-.||+||- .|+ .+... + .+|++||++ +.+++.|++-+- ..++
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~--~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDIS--PSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES---HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECC--HHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 3489999999993 333 33331 2 289999999 569988875320 0011
Q ss_pred ---------cceEEEEEcCCCCc-CCCCCCCcEEEEcCcC-C-CCCChHHHHHHHHHhccCC
Q 030935 120 ---------NCRVMGLTWGFLDA-SIFDLNPNIILGADVF-Y-DASGKICAFEILICSLFPI 169 (169)
Q Consensus 120 ---------~~~~~~l~~~~~~~-~~~~~~fDlIi~sd~i-y-~~~~~~~l~~~l~~~L~p~ 169 (169)
.++ +...+... .....+||+|+|..|+ | +.+....+++.+++.|+||
T Consensus 110 ~~v~~~lr~~V~---F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pg 168 (196)
T PF01739_consen 110 YRVKPELRKMVR---FRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPG 168 (196)
T ss_dssp TTE-HHHHTTEE---EEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEE
T ss_pred eeEChHHcCceE---EEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCC
Confidence 122 22333333 2334599999999977 3 3355688999999999985
No 212
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.93 E-value=3.1e-05 Score=62.47 Aligned_cols=56 Identities=7% Similarity=-0.108 Sum_probs=43.8
Q ss_pred HHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhC---CeEEEEcCCCcHHHHHHHHHHHHH
Q 030935 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEM 116 (169)
Q Consensus 59 a~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g---a~V~~~D~~~~~~~l~~~~~n~~~ 116 (169)
.+-+.+.....++..+||.+||.|.-+..+++.. .+|+++|.+ +++++.+++++..
T Consensus 8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D--~~al~~ak~~L~~ 66 (296)
T PRK00050 8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRD--PDAIAAAKDRLKP 66 (296)
T ss_pred HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCC--HHHHHHHHHhhcc
Confidence 3333333334467799999999999999998874 489999999 6799999988754
No 213
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.92 E-value=0.0001 Score=58.64 Aligned_cols=97 Identities=16% Similarity=0.100 Sum_probs=63.9
Q ss_pred CCeEEEECCCCC----HHHHHHHHhC-------CeEEEEcCCCcHHHHHHHHHHHHH-----hCC-------------c-
Q 030935 71 GANVVELGAGTS----LPGLVAAKVG-------SNVTLTDDSNRIEVLKNMRRVCEM-----NKL-------------N- 120 (169)
Q Consensus 71 ~~~vLElGcGtG----l~~l~~a~~g-------a~V~~~D~~~~~~~l~~~~~n~~~-----n~~-------------~- 120 (169)
.-+|+-.||+|| -+++.+...+ .+|++||++. .+++.|+.-+-. .++ +
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~--~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~ 174 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDL--SVLEKARAGIYPSRELLRGLPPELLRRYFERGGDG 174 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCH--HHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCC
Confidence 458999999999 3444444432 2799999994 599888743211 111 0
Q ss_pred -c-------eEEEEEcCCCCcCC-CCCCCcEEEEcCcC-C-CCCChHHHHHHHHHhccCC
Q 030935 121 -C-------RVMGLTWGFLDASI-FDLNPNIILGADVF-Y-DASGKICAFEILICSLFPI 169 (169)
Q Consensus 121 -~-------~~~~l~~~~~~~~~-~~~~fDlIi~sd~i-y-~~~~~~~l~~~l~~~L~p~ 169 (169)
. +...+.+.+..... ...+||+|+|-+|+ | +.+....+++.++..|+||
T Consensus 175 ~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~g 234 (268)
T COG1352 175 SYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPG 234 (268)
T ss_pred cEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCC
Confidence 0 11223344443333 55689999999976 5 4466688999999999996
No 214
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.89 E-value=1.8e-05 Score=61.48 Aligned_cols=100 Identities=14% Similarity=0.040 Sum_probs=69.9
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc---CCCCCCCcEE
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA---SIFDLNPNII 143 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~---~~~~~~fDlI 143 (169)
..+|.+|||-+.|-|..++.++++|| +|+-++.+++ +++.++-|=-..++.-....+..|+..+ .+.+.+||+|
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~--VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaI 209 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPN--VLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAI 209 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCC--eEEeeccCCCCccccccccEEecccHHHHHhcCCccccceE
Confidence 34789999999999999999999999 8999999965 8888776643223321123344555433 4456689999
Q ss_pred EEcCcCCCCC-C--hHHHHHHHHHhccCC
Q 030935 144 LGADVFYDAS-G--KICAFEILICSLFPI 169 (169)
Q Consensus 144 i~sd~iy~~~-~--~~~l~~~l~~~L~p~ 169 (169)
|--.+=+..+ . -+.|.+-+++.|+||
T Consensus 210 iHDPPRfS~AgeLYseefY~El~RiLkrg 238 (287)
T COG2521 210 IHDPPRFSLAGELYSEEFYRELYRILKRG 238 (287)
T ss_pred eeCCCccchhhhHhHHHHHHHHHHHcCcC
Confidence 9544433321 1 366888888888886
No 215
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=97.88 E-value=3.4e-05 Score=64.78 Aligned_cols=75 Identities=17% Similarity=0.266 Sum_probs=54.8
Q ss_pred eEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCC-CCCCcEEEEcCcC
Q 030935 73 NVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF-DLNPNIILGADVF 149 (169)
Q Consensus 73 ~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~-~~~fDlIi~sd~i 149 (169)
-|||+|+|||++++++++.|+ .|++++.-+ .|...+++-...|+.+.++..+.-...+-... ..+-|+++..++.
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~Evfk--PM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~fd 145 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFK--PMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDFD 145 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhc--hHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhhh
Confidence 489999999999999999999 799999985 49999999889998876554443322111111 2356777765543
No 216
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.86 E-value=7.5e-05 Score=64.76 Aligned_cols=76 Identities=12% Similarity=0.034 Sum_probs=52.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC----------CeEEEEcCCCcHHHHHHHHHHHHHhC-CcceEEEEEcCCCCc-----
Q 030935 70 SGANVVELGAGTSLPGLVAAKVG----------SNVTLTDDSNRIEVLKNMRRVCEMNK-LNCRVMGLTWGFLDA----- 133 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~g----------a~V~~~D~~~~~~~l~~~~~n~~~n~-~~~~~~~l~~~~~~~----- 133 (169)
...+|||.|||+|.+.+.++... .++++.|++ +.++..++.|+...+ ....+. +++...
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId--~~a~~~a~~~l~~~~~~~~~i~---~~d~l~~~~~~ 105 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADID--KTLLKRAKKLLGEFALLEINVI---NFNSLSYVLLN 105 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechh--HHHHHHHHHHHhhcCCCCceee---ecccccccccc
Confidence 34589999999999988777632 368999999 569999999987665 222222 222111
Q ss_pred -CCCCCCCcEEEEcCcCC
Q 030935 134 -SIFDLNPNIILGADVFY 150 (169)
Q Consensus 134 -~~~~~~fDlIi~sd~iy 150 (169)
.....+||+||++.+.=
T Consensus 106 ~~~~~~~fD~IIgNPPy~ 123 (524)
T TIGR02987 106 IESYLDLFDIVITNPPYG 123 (524)
T ss_pred cccccCcccEEEeCCCcc
Confidence 11124899999988764
No 217
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=97.85 E-value=7.3e-05 Score=56.86 Aligned_cols=95 Identities=18% Similarity=0.013 Sum_probs=59.5
Q ss_pred eEEEECCCCCHHHHHHHHhCC--eEEEEcCCCcHHHHHHHHHHHHHhCCcc-eEEEEEcCCCCcC-CCCCCCcEEE--Ec
Q 030935 73 NVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNC-RVMGLTWGFLDAS-IFDLNPNIIL--GA 146 (169)
Q Consensus 73 ~vLElGcGtGl~~l~~a~~ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~~-~~~~l~~~~~~~~-~~~~~fDlIi--~s 146 (169)
.+||||||.|-..+.+|+... .++++|+. ...+..+.+.+...+++. .+...+....... ..+.++|-|. ..
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~--~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIR--KKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES---HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecc--hHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 799999999999998888654 89999999 458888888887777753 3322222221111 2235666665 33
Q ss_pred CcCCCC------CChHHHHHHHHHhccCC
Q 030935 147 DVFYDA------SGKICAFEILICSLFPI 169 (169)
Q Consensus 147 d~iy~~------~~~~~l~~~l~~~L~p~ 169 (169)
|+-.-. -.-+++++.+++.|+||
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~g 126 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPG 126 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEE
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCC
Confidence 443211 13578999999999885
No 218
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.84 E-value=7.5e-05 Score=54.89 Aligned_cols=69 Identities=13% Similarity=-0.073 Sum_probs=51.0
Q ss_pred EEEcCCCcHHHHHHHHHHHHHhCC----cceEEEEEcCCCCc-CCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 96 TLTDDSNRIEVLKNMRRVCEMNKL----NCRVMGLTWGFLDA-SIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 96 ~~~D~~~~~~~l~~~~~n~~~n~~----~~~~~~l~~~~~~~-~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+++|.+ ++|++.++++.+..+. ++++. .++... +..+.+||+|+++.++++..+...+++.+++.||||
T Consensus 1 ~GvD~S--~~ML~~A~~~~~~~~~~~~~~i~~~---~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpG 74 (160)
T PLN02232 1 MGLDFS--SEQLAVAATRQSLKARSCYKCIEWI---EGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPG 74 (160)
T ss_pred CeEcCC--HHHHHHHHHhhhcccccCCCceEEE---EechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcC
Confidence 478999 5699999877653221 23333 333322 344558999999999999999999999999999996
No 219
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.84 E-value=0.00011 Score=62.89 Aligned_cols=86 Identities=10% Similarity=0.032 Sum_probs=58.2
Q ss_pred hHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh-C--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCC
Q 030935 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGF 130 (169)
Q Consensus 54 ~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~ 130 (169)
+|...+..+.. ...+|.+|||++||.|.=+..+|.. + ..|++.|+++ .-++.+++|+++.++.. +....+..
T Consensus 99 sS~l~~~~L~~--~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~--~R~~~L~~nl~r~G~~n-v~v~~~D~ 173 (470)
T PRK11933 99 SSMLPVAALFA--DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSA--SRVKVLHANISRCGVSN-VALTHFDG 173 (470)
T ss_pred HHHHHHHHhcc--CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCH--HHHHHHHHHHHHcCCCe-EEEEeCch
Confidence 44444444432 2347789999999999999888774 2 3899999995 58899999999988764 22222221
Q ss_pred C-CcCCCCCCCcEEE
Q 030935 131 L-DASIFDLNPNIIL 144 (169)
Q Consensus 131 ~-~~~~~~~~fDlIi 144 (169)
. .....+..||.|+
T Consensus 174 ~~~~~~~~~~fD~IL 188 (470)
T PRK11933 174 RVFGAALPETFDAIL 188 (470)
T ss_pred hhhhhhchhhcCeEE
Confidence 1 1112345799999
No 220
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.81 E-value=0.0002 Score=57.47 Aligned_cols=95 Identities=12% Similarity=-0.043 Sum_probs=65.9
Q ss_pred CeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhC--CcceEEEEEcCCCCcCC--CCCCCcEEEE
Q 030935 72 ANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNK--LNCRVMGLTWGFLDASI--FDLNPNIILG 145 (169)
Q Consensus 72 ~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~--~~~~~~~l~~~~~~~~~--~~~~fDlIi~ 145 (169)
++||-||-|.|.....+++.. .+++++|++ +.+++.+++-+..-. .......+..++-.+.. .+.+||+||.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID--~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~ 155 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEID--PAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIV 155 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcC--HHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEE
Confidence 599999999999999999987 489999999 569999988764332 11112223334432211 2238999995
Q ss_pred cCcCCCCCC-----hHHHHHHHHHhccCC
Q 030935 146 ADVFYDASG-----KICAFEILICSLFPI 169 (169)
Q Consensus 146 sd~iy~~~~-----~~~l~~~l~~~L~p~ 169 (169)
|+.=.... -..+++.++++|+|+
T Consensus 156 -D~tdp~gp~~~Lft~eFy~~~~~~L~~~ 183 (282)
T COG0421 156 -DSTDPVGPAEALFTEEFYEGCRRALKED 183 (282)
T ss_pred -cCCCCCCcccccCCHHHHHHHHHhcCCC
Confidence 54433221 378999999999985
No 221
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.80 E-value=0.00012 Score=56.24 Aligned_cols=70 Identities=16% Similarity=0.086 Sum_probs=48.9
Q ss_pred EEEECCCCCHHHHHHHHhCC--eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCC-CCcEEEEc
Q 030935 74 VVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDL-NPNIILGA 146 (169)
Q Consensus 74 vLElGcGtGl~~l~~a~~ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~-~fDlIi~s 146 (169)
|.|+||--|.+++.+.+.|. +++++|++ +..++.|++|++.+++..++. ...++-...+.+. ..|.|+-+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~--~gpL~~A~~~i~~~~l~~~i~-~rlgdGL~~l~~~e~~d~ivIA 73 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDIN--PGPLEKAKENIAKYGLEDRIE-VRLGDGLEVLKPGEDVDTIVIA 73 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESS--HHHHHHHHHHHHHTT-TTTEE-EEE-SGGGG--GGG---EEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCC--HHHHHHHHHHHHHcCCcccEE-EEECCcccccCCCCCCCEEEEe
Confidence 68999999999999999987 79999999 569999999999998775544 3344433333333 36776643
No 222
>PHA01634 hypothetical protein
Probab=97.78 E-value=5.8e-05 Score=53.38 Aligned_cols=51 Identities=16% Similarity=0.185 Sum_probs=45.8
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCc
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~ 120 (169)
..++++|+|+|++.|-.++.++.+|| +|++.+.++ .+.+..++|++.|++-
T Consensus 26 dvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~--kl~k~~een~k~nnI~ 77 (156)
T PHA01634 26 NVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEE--KLRKKWEEVCAYFNIC 77 (156)
T ss_pred eecCCEEEEecCCccchhhHHhhcCccEEEEeccCH--HHHHHHHHHhhhheee
Confidence 46899999999999999999999999 799999995 5999999999988653
No 223
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.76 E-value=5.1e-05 Score=61.04 Aligned_cols=96 Identities=18% Similarity=0.007 Sum_probs=61.8
Q ss_pred CeEEEECCCCCH----HHHHHHHhC------CeEEEEcCCCcHHHHHHHHHHHHH----hCC------------------
Q 030935 72 ANVVELGAGTSL----PGLVAAKVG------SNVTLTDDSNRIEVLKNMRRVCEM----NKL------------------ 119 (169)
Q Consensus 72 ~~vLElGcGtGl----~~l~~a~~g------a~V~~~D~~~~~~~l~~~~~n~~~----n~~------------------ 119 (169)
-+|+-.||.||- +++.+.... .+|++||++ +.+++.|++-+-. .++
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs--~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDID--TEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECC--HHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 589999999993 333343321 379999999 4699988865311 000
Q ss_pred ----c--c-eEEEEEcCCCCcC-C-CCCCCcEEEEcCcCCCC--CChHHHHHHHHHhccCC
Q 030935 120 ----N--C-RVMGLTWGFLDAS-I-FDLNPNIILGADVFYDA--SGKICAFEILICSLFPI 169 (169)
Q Consensus 120 ----~--~-~~~~l~~~~~~~~-~-~~~~fDlIi~sd~iy~~--~~~~~l~~~l~~~L~p~ 169 (169)
. + ....+...+.... . ...+||+|+|..++.+. +....+++.+++.|+||
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pg 255 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPD 255 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCC
Confidence 0 0 0112333333331 1 23589999998877443 56789999999999997
No 224
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.73 E-value=8.4e-05 Score=57.19 Aligned_cols=123 Identities=11% Similarity=-0.042 Sum_probs=70.9
Q ss_pred ccCCcceeecchHHHHHHHHHhccCC-----CCCCeEEEECCCCCHHHHHH-HHhCCeEEEEcCCCcHHHHHHHHHHHHH
Q 030935 43 MKEEYGLFVWPCSVILAEYVWQQRYR-----FSGANVVELGAGTSLPGLVA-AKVGSNVTLTDDSNRIEVLKNMRRVCEM 116 (169)
Q Consensus 43 ~~~~~g~~~W~~~~~La~~l~~~~~~-----~~~~~vLElGcGtGl~~l~~-a~~ga~V~~~D~~~~~~~l~~~~~n~~~ 116 (169)
|-+++|...=+.-.-=..||.+.... ....++||.|||.|.++-.+ .+...+|.++|.. +..++.|++.+..
T Consensus 23 MLGG~~~is~~Di~gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~--~~Fl~~a~~~l~~ 100 (218)
T PF05891_consen 23 MLGGFGHISRIDIQGSRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPV--EKFLEQAKEYLGK 100 (218)
T ss_dssp HTTT-GGGHHHHHHHHHHHHHCCCT---------SEEEEET-TTTHHHHHTCCCC-SEEEEEES---HHHHHHHHHHTCC
T ss_pred cccCCCCCChHHHHHHHHHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHhcCEeEEeccC--HHHHHHHHHHhcc
Confidence 33455533333333333455543222 23458999999999999855 4455589999999 5699999876654
Q ss_pred hCCcceEEEEEcCCCCcCCC-CCCCcEEEEcCcCCCC--CChHHHHHHHHHhccCC
Q 030935 117 NKLNCRVMGLTWGFLDASIF-DLNPNIILGADVFYDA--SGKICAFEILICSLFPI 169 (169)
Q Consensus 117 n~~~~~~~~l~~~~~~~~~~-~~~fDlIi~sd~iy~~--~~~~~l~~~l~~~L~p~ 169 (169)
.... +.....-.+....+ +.+||+|++-=|+=|. .++-.+++.++++|+|+
T Consensus 101 ~~~~--v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~ 154 (218)
T PF05891_consen 101 DNPR--VGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPN 154 (218)
T ss_dssp GGCC--EEEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEE
T ss_pred cCCC--cceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCC
Confidence 2222 22222111111112 3599999998887655 56788999999999984
No 225
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.72 E-value=0.00044 Score=55.31 Aligned_cols=97 Identities=19% Similarity=0.215 Sum_probs=58.1
Q ss_pred CCCCCCeEEEECCCCCHHHHHHHHh-C--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCC-C-cCCCCCCCc
Q 030935 67 YRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFL-D-ASIFDLNPN 141 (169)
Q Consensus 67 ~~~~~~~vLElGcGtGl~~l~~a~~-g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~-~-~~~~~~~fD 141 (169)
+.+..++|||+|||+|....++... + .+++++|.+ +.|++.++.-++.. .... ...|... . ....-.+.|
T Consensus 30 p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s--~~~~~l~~~l~~~~-~~~~--~~~~~~~~~~~~~~~~~~D 104 (274)
T PF09243_consen 30 PDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRS--PEMLELAKRLLRAG-PNNR--NAEWRRVLYRDFLPFPPDD 104 (274)
T ss_pred cCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCC--HHHHHHHHHHHhcc-cccc--cchhhhhhhcccccCCCCc
Confidence 4567789999999999755544442 2 279999999 56888877754422 2211 1112111 0 111112449
Q ss_pred EEEEcCcCCCCCC--hHHHHHHHHHhccC
Q 030935 142 IILGADVFYDASG--KICAFEILICSLFP 168 (169)
Q Consensus 142 lIi~sd~iy~~~~--~~~l~~~l~~~L~p 168 (169)
+|+++.++-.... ...+++.+.+.+++
T Consensus 105 Lvi~s~~L~EL~~~~r~~lv~~LW~~~~~ 133 (274)
T PF09243_consen 105 LVIASYVLNELPSAARAELVRSLWNKTAP 133 (274)
T ss_pred EEEEehhhhcCCchHHHHHHHHHHHhccC
Confidence 9999999986655 34455555554543
No 226
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.69 E-value=0.00021 Score=55.05 Aligned_cols=98 Identities=17% Similarity=0.130 Sum_probs=77.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcC
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGAD 147 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd 147 (169)
.+|.+||++|-|.|++.-.+..+.. +=+.++.. |++++..|.+.-...-++.+..-.|.+....+.+..||-|+- |
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~h--p~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~y-D 176 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAH--PDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYY-D 176 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecC--HHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEe-e
Confidence 4788999999999999888776654 55667777 679999998875555566677788998877777788999884 5
Q ss_pred cC-CCCCChHHHHHHHHHhccCC
Q 030935 148 VF-YDASGKICAFEILICSLFPI 169 (169)
Q Consensus 148 ~i-y~~~~~~~l~~~l~~~L~p~ 169 (169)
.. -+-+++..+.+.+.++|||+
T Consensus 177 Ty~e~yEdl~~~hqh~~rLLkP~ 199 (271)
T KOG1709|consen 177 TYSELYEDLRHFHQHVVRLLKPE 199 (271)
T ss_pred chhhHHHHHHHHHHHHhhhcCCC
Confidence 55 34467888999999999995
No 227
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.63 E-value=0.0015 Score=44.81 Aligned_cols=91 Identities=22% Similarity=0.130 Sum_probs=54.7
Q ss_pred EEEECCCCCHHHHHHHHhC---CeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCcCCCC-CCCcEEEEcCc
Q 030935 74 VVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASIFD-LNPNIILGADV 148 (169)
Q Consensus 74 vLElGcGtGl~~l~~a~~g---a~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~~~~~-~~fDlIi~sd~ 148 (169)
++|+|||+|... .+++.. ..++++|.+ +.++...+......... ......+......+... ..||++.....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLS--PEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLV 128 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCC--HHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeee
Confidence 999999999877 444433 378889998 45777644443322111 22332332221122233 37999944444
Q ss_pred CCCCCChHHHHHHHHHhccC
Q 030935 149 FYDASGKICAFEILICSLFP 168 (169)
Q Consensus 149 iy~~~~~~~l~~~l~~~L~p 168 (169)
.++.. ....+..+.+.|+|
T Consensus 129 ~~~~~-~~~~~~~~~~~l~~ 147 (257)
T COG0500 129 LHLLP-PAKALRELLRVLKP 147 (257)
T ss_pred hhcCC-HHHHHHHHHHhcCC
Confidence 44444 88899999998887
No 228
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.63 E-value=0.00081 Score=55.87 Aligned_cols=91 Identities=7% Similarity=-0.068 Sum_probs=66.0
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC-----------------------------------------
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS----------------------------------------- 93 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga----------------------------------------- 93 (169)
-..||.=|........+..++|-=||+|.+.+.+|..+.
T Consensus 176 ketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~ 255 (381)
T COG0116 176 KETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELP 255 (381)
T ss_pred hHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccc
Confidence 455666666555555667899999999999999998774
Q ss_pred eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCC-CCCcEEEEcCc
Q 030935 94 NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFD-LNPNIILGADV 148 (169)
Q Consensus 94 ~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~-~~fDlIi~sd~ 148 (169)
.+++.|++ +++++.|+.|+...|+...+. +...+......+ ..+|+|||+.+
T Consensus 256 ~~~G~Did--~r~i~~Ak~NA~~AGv~d~I~-f~~~d~~~l~~~~~~~gvvI~NPP 308 (381)
T COG0116 256 IIYGSDID--PRHIEGAKANARAAGVGDLIE-FKQADATDLKEPLEEYGVVISNPP 308 (381)
T ss_pred eEEEecCC--HHHHHHHHHHHHhcCCCceEE-EEEcchhhCCCCCCcCCEEEeCCC
Confidence 27799999 569999999999999875433 333332211112 58999998554
No 229
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.51 E-value=0.00016 Score=56.86 Aligned_cols=96 Identities=17% Similarity=0.078 Sum_probs=62.6
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCC---cceEEEEEcCCCCc---CCCCCCCc
Q 030935 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKL---NCRVMGLTWGFLDA---SIFDLNPN 141 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~---~~~~~~l~~~~~~~---~~~~~~fD 141 (169)
+.++||=||-|.|.....+.+.. .+|+++|++ +.+++.+++-...... +.++. +..++-.. .....+||
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD--~~Vv~~a~~~f~~~~~~~~d~r~~-i~~~Dg~~~l~~~~~~~yD 152 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEID--PEVVELARKYFPEFSEGLDDPRVR-IIIGDGRKFLKETQEEKYD 152 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES---HHHHHHHHHHTHHHHTTGGSTTEE-EEESTHHHHHHTSSST-EE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecC--hHHHHHHHHhchhhccccCCCceE-EEEhhhHHHHHhccCCccc
Confidence 56899999999999999888865 489999999 6799999887654321 12222 33343221 22222899
Q ss_pred EEEEcCcCC---CCC--ChHHHHHHHHHhccCC
Q 030935 142 IILGADVFY---DAS--GKICAFEILICSLFPI 169 (169)
Q Consensus 142 lIi~sd~iy---~~~--~~~~l~~~l~~~L~p~ 169 (169)
+|+. |+.- ... .-.++++.+++.|+|+
T Consensus 153 vIi~-D~~dp~~~~~~l~t~ef~~~~~~~L~~~ 184 (246)
T PF01564_consen 153 VIIV-DLTDPDGPAPNLFTREFYQLCKRRLKPD 184 (246)
T ss_dssp EEEE-ESSSTTSCGGGGSSHHHHHHHHHHEEEE
T ss_pred EEEE-eCCCCCCCcccccCHHHHHHHHhhcCCC
Confidence 9996 4433 111 1368999999999874
No 230
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.47 E-value=0.0013 Score=52.51 Aligned_cols=96 Identities=18% Similarity=0.037 Sum_probs=65.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCC------------------------------
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL------------------------------ 119 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~------------------------------ 119 (169)
...+||==|||.|.++..+|++|..|.+.|.|- -|+ +-.|.-+|..
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~--~Ml--l~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~i 131 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSY--FML--LASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRI 131 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccceEEEEEchH--HHH--HHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEe
Confidence 456899999999999999999999999999993 243 2222322210
Q ss_pred c----------ceEEEEEcCCCCcCCCC----CCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 120 N----------CRVMGLTWGFLDASIFD----LNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 120 ~----------~~~~~l~~~~~~~~~~~----~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+ ..-..+.+|++.+...+ .+||.|+..=.|=...++-.-+++|...||||
T Consensus 132 PDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpg 195 (270)
T PF07942_consen 132 PDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPG 195 (270)
T ss_pred CCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccC
Confidence 0 01123555665443222 48999998733334466788999999999996
No 231
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.37 E-value=0.00017 Score=55.64 Aligned_cols=77 Identities=13% Similarity=0.055 Sum_probs=59.6
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCC-----CCCCcEEE
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF-----DLNPNIIL 144 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~-----~~~fDlIi 144 (169)
.-..|+|.-||.|.-.+..|.++..|+++|++ |.=+..|++|++..|++.+ ..+..|++..... ...+|+|+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiD--PikIa~AkhNaeiYGI~~r-ItFI~GD~ld~~~~lq~~K~~~~~vf 170 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDID--PVKIACARHNAEVYGVPDR-ITFICGDFLDLASKLKADKIKYDCVF 170 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCeEEEEecc--HHHHHHHhccceeecCCce-eEEEechHHHHHHHHhhhhheeeeee
Confidence 34589999999999999999999999999999 5689999999999999864 3466666543221 22466887
Q ss_pred EcCcC
Q 030935 145 GADVF 149 (169)
Q Consensus 145 ~sd~i 149 (169)
.+...
T Consensus 171 ~sppw 175 (263)
T KOG2730|consen 171 LSPPW 175 (263)
T ss_pred cCCCC
Confidence 76654
No 232
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.33 E-value=0.0052 Score=48.94 Aligned_cols=97 Identities=13% Similarity=-0.021 Sum_probs=64.1
Q ss_pred HhccCCCCCCeEEEECCCCCHHHHHHHHhCC---eEEEEcCCCcHHHHHHHHHHHHHhCCcce--EEEEEcCCCCcCCCC
Q 030935 63 WQQRYRFSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRIEVLKNMRRVCEMNKLNCR--VMGLTWGFLDASIFD 137 (169)
Q Consensus 63 ~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga---~V~~~D~~~~~~~l~~~~~n~~~n~~~~~--~~~l~~~~~~~~~~~ 137 (169)
.+..+..+|.+|||-|.|+|-++.++++.-+ ++.-.|+.+ .-.+.+++-.+.+++... +..-+....--...+
T Consensus 98 ~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~--~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks 175 (314)
T KOG2915|consen 98 LSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHE--TRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKS 175 (314)
T ss_pred HHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecH--HHHHHHHHHHHHhCCCcceEEEEeecccCCccccc
Confidence 3344566899999999999999999999643 899999984 467778888888887532 332222211112224
Q ss_pred CCCcEEEEcCcCCCCCChHHHHHHH
Q 030935 138 LNPNIILGADVFYDASGKICAFEIL 162 (169)
Q Consensus 138 ~~fDlIi~sd~iy~~~~~~~l~~~l 162 (169)
..+|.|+. |+.--...++.+.+.+
T Consensus 176 ~~aDaVFL-DlPaPw~AiPha~~~l 199 (314)
T KOG2915|consen 176 LKADAVFL-DLPAPWEAIPHAAKIL 199 (314)
T ss_pred cccceEEE-cCCChhhhhhhhHHHh
Confidence 57888875 6655445555555543
No 233
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.32 E-value=0.0015 Score=56.53 Aligned_cols=98 Identities=11% Similarity=-0.005 Sum_probs=63.6
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCC--eEEEEcCCCcHHHHHHHHHHHHHhCCcc-eEEEEEcCCCCcCCCCCCCcEEE--
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNC-RVMGLTWGFLDASIFDLNPNIIL-- 144 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~~-~~~~l~~~~~~~~~~~~~fDlIi-- 144 (169)
.+..+||||||.|-..+.+|+... .++++|+.. ..+..+.+.+...++.. .+...+.......+.+.++|-|.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~--~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~ 424 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYL--NGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYIL 424 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeH--HHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEE
Confidence 456899999999999999888765 799999995 46666666666666642 22211211111223345677665
Q ss_pred EcCcCCCC------CChHHHHHHHHHhccCC
Q 030935 145 GADVFYDA------SGKICAFEILICSLFPI 169 (169)
Q Consensus 145 ~sd~iy~~------~~~~~l~~~l~~~L~p~ 169 (169)
..|+-+-. =..+.+++.+++.|+||
T Consensus 425 FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~g 455 (506)
T PRK01544 425 FPDPWIKNKQKKKRIFNKERLKILQDKLKDN 455 (506)
T ss_pred CCCCCCCCCCccccccCHHHHHHHHHhcCCC
Confidence 34454321 12578999999999986
No 234
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=97.22 E-value=0.00031 Score=57.41 Aligned_cols=82 Identities=18% Similarity=0.140 Sum_probs=60.1
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHH-------HHHHHHHHhCCcceEEEEEcCCCCc-CCC-CC
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLK-------NMRRVCEMNKLNCRVMGLTWGFLDA-SIF-DL 138 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~-------~~~~n~~~n~~~~~~~~l~~~~~~~-~~~-~~ 138 (169)
..+|+.|.|=-.|||.+-+.+|..|+-|+++|++-+ ++. +++.|.+..+...++..+.-.+... ++. ..
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr--~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~ 283 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYR--TVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNL 283 (421)
T ss_pred cCCCCEEecCccccCceeeehhhhcceeeccccchh--eeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcc
Confidence 447889999999999999999999999999999953 665 6788888888654433222233222 222 34
Q ss_pred CCcEEEEcCcCCCC
Q 030935 139 NPNIILGADVFYDA 152 (169)
Q Consensus 139 ~fDlIi~sd~iy~~ 152 (169)
.||.||| |+-|-+
T Consensus 284 ~fDaIvc-DPPYGV 296 (421)
T KOG2671|consen 284 KFDAIVC-DPPYGV 296 (421)
T ss_pred eeeEEEe-CCCcch
Confidence 8999998 888854
No 235
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.18 E-value=0.0049 Score=47.85 Aligned_cols=96 Identities=14% Similarity=0.051 Sum_probs=66.4
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc-------CCCC
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-------SIFD 137 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~-------~~~~ 137 (169)
....+++||||.=||..++..|.. +.+|+++|++. +..+...+-.+..+..-++. +..+...+ ....
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~--~~~~~~~~~~k~agv~~KI~-~i~g~a~esLd~l~~~~~~ 147 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDA--DAYEIGLELVKLAGVDHKIT-FIEGPALESLDELLADGES 147 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecCh--HHHHHhHHHHHhccccceee-eeecchhhhHHHHHhcCCC
Confidence 446789999999999998877764 56999999994 58888888777777654332 22222111 1123
Q ss_pred CCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 138 LNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 138 ~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
..||+++. | .+...+...++.+.++|+||
T Consensus 148 ~tfDfaFv-D--adK~nY~~y~e~~l~Llr~G 176 (237)
T KOG1663|consen 148 GTFDFAFV-D--ADKDNYSNYYERLLRLLRVG 176 (237)
T ss_pred CceeEEEE-c--cchHHHHHHHHHHHhhcccc
Confidence 48999985 3 23445557778888888875
No 236
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.11 E-value=0.00061 Score=53.96 Aligned_cols=101 Identities=13% Similarity=0.114 Sum_probs=61.8
Q ss_pred CCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCC--------------------------
Q 030935 67 YRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKL-------------------------- 119 (169)
Q Consensus 67 ~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~-------------------------- 119 (169)
...+|.++||+|||.-+..+..|..-+ +|+++|+.+ ...+.+++.++..+.
T Consensus 53 g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~--~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~ 130 (256)
T PF01234_consen 53 GGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSE--QNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEK 130 (256)
T ss_dssp SSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSH--HHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHH
T ss_pred cCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccH--hhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHH
Confidence 445788999999999877665555444 799999995 477766665543221
Q ss_pred -cceEEE-EEcCCCCc-CCC-----CCCCcEEEEcCcCC----CCCChHHHHHHHHHhccCC
Q 030935 120 -NCRVMG-LTWGFLDA-SIF-----DLNPNIILGADVFY----DASGKICAFEILICSLFPI 169 (169)
Q Consensus 120 -~~~~~~-l~~~~~~~-~~~-----~~~fDlIi~sd~iy----~~~~~~~l~~~l~~~L~p~ 169 (169)
.-.+.. +.|+-... ++. +.+||+|+++=++- +.+.+...++.+..+||||
T Consensus 131 lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpG 192 (256)
T PF01234_consen 131 LRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPG 192 (256)
T ss_dssp HHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEE
T ss_pred HHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCC
Confidence 111322 33332222 121 22599999988775 4466788999999999996
No 237
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.09 E-value=0.002 Score=50.26 Aligned_cols=95 Identities=13% Similarity=0.087 Sum_probs=60.2
Q ss_pred HHHHHHHHhccCCC--CCCeEEEECCCCCHH--HHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHh-CCcceEEEEEcCC
Q 030935 56 VILAEYVWQQRYRF--SGANVVELGAGTSLP--GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN-KLNCRVMGLTWGF 130 (169)
Q Consensus 56 ~~La~~l~~~~~~~--~~~~vLElGcGtGl~--~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n-~~~~~~~~l~~~~ 130 (169)
..|++.|.+-.... ++.++||+|.|.-.+ -+-.-.+|.+.+++|+++ -.++.|+.++..| ++...+.-....+
T Consensus 62 h~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~--~sl~sA~~ii~~N~~l~~~I~lr~qk~ 139 (292)
T COG3129 62 HHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDS--QSLSSAKAIISANPGLERAIRLRRQKD 139 (292)
T ss_pred HHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCH--HHHHHHHHHHHcCcchhhheeEEeccC
Confidence 45566665543333 344789999885532 233344678999999995 4999999999988 5543322111111
Q ss_pred ---CCcCC--CCCCCcEEEEcCcCCCC
Q 030935 131 ---LDASI--FDLNPNIILGADVFYDA 152 (169)
Q Consensus 131 ---~~~~~--~~~~fDlIi~sd~iy~~ 152 (169)
..... ..+.||+++|+.++|..
T Consensus 140 ~~~if~giig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 140 SDAIFNGIIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred ccccccccccccceeeeEecCCCcchh
Confidence 11111 13589999999999854
No 238
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.06 E-value=0.00029 Score=54.04 Aligned_cols=86 Identities=20% Similarity=0.237 Sum_probs=64.3
Q ss_pred CCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCcCC
Q 030935 71 GANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFY 150 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~iy 150 (169)
..++||||+|.|-++..++....+|.+|++|. .|....++ .+.++ ...++|.. .+-+||+|.|-.++=
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~feevyATElS~--tMr~rL~k----k~ynV-l~~~ew~~-----t~~k~dli~clNlLD 180 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTFEEVYATELSW--TMRDRLKK----KNYNV-LTEIEWLQ-----TDVKLDLILCLNLLD 180 (288)
T ss_pred CeeEEeccCCCcchhhhhcchHHHHHHHHhhH--HHHHHHhh----cCCce-eeehhhhh-----cCceeehHHHHHHHH
Confidence 46899999999999998888777899999994 46655443 33332 23355553 234899999998887
Q ss_pred CCCChHHHHHHHHHhccC
Q 030935 151 DASGKICAFEILICSLFP 168 (169)
Q Consensus 151 ~~~~~~~l~~~l~~~L~p 168 (169)
-..+.-.+++-|+..|+|
T Consensus 181 Rc~~p~kLL~Di~~vl~p 198 (288)
T KOG3987|consen 181 RCFDPFKLLEDIHLVLAP 198 (288)
T ss_pred hhcChHHHHHHHHHHhcc
Confidence 777778889999988887
No 239
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=96.98 E-value=0.034 Score=44.80 Aligned_cols=98 Identities=16% Similarity=0.058 Sum_probs=67.4
Q ss_pred CCCeEEEECCCCCHHHHHHHH-hC---CeEEEEcCCCcHHHHHHHHHHHHHhCCcc--eEEEEEcCCCCc-CCCCCCCcE
Q 030935 70 SGANVVELGAGTSLPGLVAAK-VG---SNVTLTDDSNRIEVLKNMRRVCEMNKLNC--RVMGLTWGFLDA-SIFDLNPNI 142 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~-~g---a~V~~~D~~~~~~~l~~~~~n~~~n~~~~--~~~~l~~~~~~~-~~~~~~fDl 142 (169)
+.-+|||+.||.|--=+-+.. .. .+|.+.|++ +..++..++-++.+++.. ++...+..+... .....++++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys--~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l 212 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYS--PINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTL 212 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCC--HHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCE
Confidence 445899999999966554433 22 379999999 569999999999999874 333333332211 112347899
Q ss_pred EEEcCcCCCCCC---hHHHHHHHHHhccCC
Q 030935 143 ILGADVFYDASG---KICAFEILICSLFPI 169 (169)
Q Consensus 143 Ii~sd~iy~~~~---~~~l~~~l~~~L~p~ 169 (169)
+|.|-++-..++ +...++-+.++|.|+
T Consensus 213 ~iVsGL~ElF~Dn~lv~~sl~gl~~al~pg 242 (311)
T PF12147_consen 213 AIVSGLYELFPDNDLVRRSLAGLARALEPG 242 (311)
T ss_pred EEEecchhhCCcHHHHHHHHHHHHHHhCCC
Confidence 999998865544 455677788888775
No 240
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=96.95 E-value=0.0021 Score=47.79 Aligned_cols=49 Identities=22% Similarity=0.124 Sum_probs=38.4
Q ss_pred hHHHHHHHHHhccCCC--CCCeEEEECCCCCHHHHHHHHhC---CeEEEEcCCC
Q 030935 54 CSVILAEYVWQQRYRF--SGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSN 102 (169)
Q Consensus 54 ~~~~La~~l~~~~~~~--~~~~vLElGcGtGl~~l~~a~~g---a~V~~~D~~~ 102 (169)
++..|.+...+..-.. ++.+||||||++|..+..+++++ .+|+++|+.+
T Consensus 5 a~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~ 58 (181)
T PF01728_consen 5 AAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGP 58 (181)
T ss_dssp HHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSS
T ss_pred HHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccc
Confidence 5667777777665222 34799999999999999999988 4899999996
No 241
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=96.94 E-value=0.00083 Score=53.55 Aligned_cols=116 Identities=13% Similarity=0.123 Sum_probs=80.4
Q ss_pred cceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC--eEEEEcCCCcHHHHHHHHHHHHHhCCc-ceE
Q 030935 47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN-CRV 123 (169)
Q Consensus 47 ~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~ 123 (169)
-|+.+-+++..-+.+|... ..+.|+.|+=+| ---+.|++++.-|. +|.++|+++ +++..+++-++..+.+ +.+
T Consensus 130 QgfvTpEttv~Rv~lm~~R-GDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDE--Rli~fi~k~aee~g~~~ie~ 205 (354)
T COG1568 130 QGFVTPETTVSRVALMYSR-GDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDE--RLIKFIEKVAEELGYNNIEA 205 (354)
T ss_pred cccccccceeeeeeeeccc-cCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechH--HHHHHHHHHHHHhCccchhh
Confidence 3444545544444555544 356899999999 77799998888664 899999996 5999999988888876 555
Q ss_pred EEEEcCCCCcCCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhcc
Q 030935 124 MGLTWGFLDASIFDLNPNIILGADVFYDASGKICAFEILICSLF 167 (169)
Q Consensus 124 ~~l~~~~~~~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~ 167 (169)
..++..+....-...+||+++ .|+.+....+..++..=...|+
T Consensus 206 ~~~Dlr~plpe~~~~kFDvfi-TDPpeTi~alk~FlgRGI~tLk 248 (354)
T COG1568 206 FVFDLRNPLPEDLKRKFDVFI-TDPPETIKALKLFLGRGIATLK 248 (354)
T ss_pred eeehhcccChHHHHhhCCeee-cCchhhHHHHHHHHhccHHHhc
Confidence 545444332222335999988 5888888777777665544443
No 242
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.91 E-value=0.0033 Score=50.22 Aligned_cols=71 Identities=14% Similarity=0.051 Sum_probs=48.5
Q ss_pred eEEEECCCCCHHHHHHHHhCCe-EEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCcCC
Q 030935 73 NVVELGAGTSLPGLVAAKVGSN-VTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFY 150 (169)
Q Consensus 73 ~vLElGcGtGl~~l~~a~~ga~-V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~iy 150 (169)
+++||.||.|..++.+.+.|.+ |.++|++ +.+++..+.|....-....+..+...+ ....+|+|+++-++-
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~--~~a~~~~~~N~~~~~~~~Di~~~~~~~-----~~~~~D~l~~gpPCq 73 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEID--KSAAETYEANFPNKLIEGDITKIDEKD-----FIPDIDLLTGGFPCQ 73 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCC--HHHHHHHHHhCCCCCccCccccCchhh-----cCCCCCEEEeCCCCh
Confidence 6899999999999999998885 8889999 458887777764221111122221111 124799999988765
No 243
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=96.82 E-value=0.0054 Score=47.25 Aligned_cols=104 Identities=14% Similarity=-0.048 Sum_probs=67.1
Q ss_pred ceeecchHHHHHHHHHhccCCCCC----CeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcce
Q 030935 48 GLFVWPCSVILAEYVWQQRYRFSG----ANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCR 122 (169)
Q Consensus 48 g~~~W~~~~~La~~l~~~~~~~~~----~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~ 122 (169)
..+--+++.+|.+|+.......+. .++||+||=+....+. ..+. +|+.+|+++. ...
T Consensus 25 ~~RGGdSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s--~~~~fdvt~IDLns~----------------~~~ 86 (219)
T PF11968_consen 25 KDRGGDSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACS--TSGWFDVTRIDLNSQ----------------HPG 86 (219)
T ss_pred CCCCCchhHHHHHHhhhhccccccccccceEEeecccCCCCccc--ccCceeeEEeecCCC----------------CCC
Confidence 334456899999999876433222 4899999964433222 2333 7999999852 112
Q ss_pred EEEEEcCCCCcC-CCCCCCcEEEEcCcCCCCCChHH---HHHHHHHhccCC
Q 030935 123 VMGLTWGFLDAS-IFDLNPNIILGADVFYDASGKIC---AFEILICSLFPI 169 (169)
Q Consensus 123 ~~~l~~~~~~~~-~~~~~fDlIi~sd~iy~~~~~~~---l~~~l~~~L~p~ 169 (169)
+...++-....+ ...++||+|.+|-|+-++++... .++...+.|+|.
T Consensus 87 I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~ 137 (219)
T PF11968_consen 87 ILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPP 137 (219)
T ss_pred ceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCC
Confidence 333444432211 12459999999999998887654 777888888773
No 244
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=96.80 E-value=0.0042 Score=51.65 Aligned_cols=95 Identities=18% Similarity=0.150 Sum_probs=67.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhC-CeEEEEcCCCcHHHHHHHHHHHH--HhCCc--ceEEEEEcCCCCcCCCCCCCcEE
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVG-SNVTLTDDSNRIEVLKNMRRVCE--MNKLN--CRVMGLTWGFLDASIFDLNPNII 143 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~g-a~V~~~D~~~~~~~l~~~~~n~~--~n~~~--~~~~~l~~~~~~~~~~~~~fDlI 143 (169)
.++.+++++|||.|-+....+..+ +++++.+.+. .+..+.+.. ...++ +.+. ..|- ...+..+..||.+
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~----~e~~~~~~~~~~~~l~~k~~~~-~~~~-~~~~fedn~fd~v 182 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNA----YEAFRANELAKKAYLDNKCNFV-VADF-GKMPFEDNTFDGV 182 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCH----HHHHHHHHHHHHHHhhhhccee-hhhh-hcCCCCccccCcE
Confidence 456689999999999999988865 5899999994 333332221 11221 1121 1111 1224456799999
Q ss_pred EEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 144 LGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 144 i~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
-+.|++-+..+...+++.+.+.++||
T Consensus 183 ~~ld~~~~~~~~~~~y~Ei~rv~kpG 208 (364)
T KOG1269|consen 183 RFLEVVCHAPDLEKVYAEIYRVLKPG 208 (364)
T ss_pred EEEeecccCCcHHHHHHHHhcccCCC
Confidence 99999999999999999999999997
No 245
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.79 E-value=0.038 Score=45.83 Aligned_cols=76 Identities=20% Similarity=0.058 Sum_probs=52.9
Q ss_pred CCCCCCeEEEECCCCCHHHHHHHHhC----CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCC--CCcCCCC-CC
Q 030935 67 YRFSGANVVELGAGTSLPGLVAAKVG----SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGF--LDASIFD-LN 139 (169)
Q Consensus 67 ~~~~~~~vLElGcGtGl~~l~~a~~g----a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~--~~~~~~~-~~ 139 (169)
+..+|.+|||+.++.|.=+..++.+. ..|++.|.++ .=+..+++|+++-|+.. +.....++ ....... .+
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~--~Rl~~l~~nl~RlG~~n-v~~~~~d~~~~~~~~~~~~~ 229 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSP--KRLKRLRENLKRLGVRN-VIVVNKDARRLAELLPGGEK 229 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCH--HHHHHHHHHHHHcCCCc-eEEEecccccccccccccCc
Confidence 34578899999999997777666643 3589999995 48899999999998875 22233222 2112222 26
Q ss_pred CcEEEE
Q 030935 140 PNIILG 145 (169)
Q Consensus 140 fDlIi~ 145 (169)
||-|+.
T Consensus 230 fD~iLl 235 (355)
T COG0144 230 FDRILL 235 (355)
T ss_pred CcEEEE
Confidence 999995
No 246
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=96.77 E-value=0.0026 Score=53.19 Aligned_cols=76 Identities=24% Similarity=0.192 Sum_probs=50.5
Q ss_pred CCeEEEECCCCCHHHHHHHHh--CC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCC--CCCCCcEEEE
Q 030935 71 GANVVELGAGTSLPGLVAAKV--GS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASI--FDLNPNIILG 145 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~~--ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~--~~~~fDlIi~ 145 (169)
+.++||-=||||+=|+-.++. +. +|++.|++ +++++.+++|++.|++..........+..... ....||+|=-
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~--~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl 127 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDIS--PEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDL 127 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES---HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCC--HHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEe
Confidence 458999999999999988876 33 89999999 57999999999999998732224333322212 3568998853
Q ss_pred cCcC
Q 030935 146 ADVF 149 (169)
Q Consensus 146 sd~i 149 (169)
|++
T Consensus 128 -DPf 130 (377)
T PF02005_consen 128 -DPF 130 (377)
T ss_dssp ---S
T ss_pred -CCC
Confidence 444
No 247
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.77 E-value=0.0026 Score=54.47 Aligned_cols=118 Identities=7% Similarity=-0.078 Sum_probs=62.5
Q ss_pred CcceeecchHHHHHHHHHhccCC-CCCC---eEEEECCCCCHHHHHHHHhCCeEEEEcCCC-cHHHHHHHHHHHHHhCCc
Q 030935 46 EYGLFVWPCSVILAEYVWQQRYR-FSGA---NVVELGAGTSLPGLVAAKVGSNVTLTDDSN-RIEVLKNMRRVCEMNKLN 120 (169)
Q Consensus 46 ~~g~~~W~~~~~La~~l~~~~~~-~~~~---~vLElGcGtGl~~l~~a~~ga~V~~~D~~~-~~~~l~~~~~n~~~n~~~ 120 (169)
+.|.....++..-.++|.+.... ..+. .+||+|||+|.+|..+..++-.++.+-..+ .+..++.|.+ -|+.
T Consensus 89 gggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale----RGvp 164 (506)
T PF03141_consen 89 GGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE----RGVP 164 (506)
T ss_pred CCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh----cCcc
Confidence 44555554655555555554433 2222 589999999999999999986433332221 1123333322 2333
Q ss_pred ceEEEEEcCCCCcCCCCCCCcEEEEcCcCCCC-CChHHHHHHHHHhccCC
Q 030935 121 CRVMGLTWGFLDASIFDLNPNIILGADVFYDA-SGKICAFEILICSLFPI 169 (169)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~fDlIi~sd~iy~~-~~~~~l~~~l~~~L~p~ 169 (169)
.-+. ..+....++++..||+|=|+.|+-.- ..-.-++--+-+.|+||
T Consensus 165 a~~~--~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpG 212 (506)
T PF03141_consen 165 AMIG--VLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPG 212 (506)
T ss_pred hhhh--hhccccccCCccchhhhhcccccccchhcccceeehhhhhhccC
Confidence 2111 11233345566677887777766422 22223445555666664
No 248
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.72 E-value=0.03 Score=45.80 Aligned_cols=97 Identities=19% Similarity=0.149 Sum_probs=60.2
Q ss_pred CCCeEEEECCCCCHHHHHHHH----h--CCeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCcC---C----
Q 030935 70 SGANVVELGAGTSLPGLVAAK----V--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDAS---I---- 135 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~----~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~~---~---- 135 (169)
++..++|||||+|.=...+.. . ....+.+|+| .++++.+..++.....+ +.+. -.|++.... .
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS--~~~L~~a~~~L~~~~~p~l~v~-~l~gdy~~~l~~l~~~~ 152 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVS--RSELQRTLAELPLGNFSHVRCA-GLLGTYDDGLAWLKRPE 152 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECC--HHHHHHHHHhhhhccCCCeEEE-EEEecHHHHHhhccccc
Confidence 456899999999965332222 2 2479999999 56999988888733332 3332 345544221 1
Q ss_pred CCCCCcEEEEcC-cCCCC--CChHHHHHHHHH-hccCC
Q 030935 136 FDLNPNIILGAD-VFYDA--SGKICAFEILIC-SLFPI 169 (169)
Q Consensus 136 ~~~~fDlIi~sd-~iy~~--~~~~~l~~~l~~-~L~p~ 169 (169)
......+++.-- .|-+. .....+++.+++ .|.|+
T Consensus 153 ~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~ 190 (319)
T TIGR03439 153 NRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPS 190 (319)
T ss_pred ccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCC
Confidence 112356666443 55443 445578899988 88885
No 249
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.70 E-value=0.016 Score=44.73 Aligned_cols=75 Identities=17% Similarity=0.139 Sum_probs=57.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCC--eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCC-CCcEEEEc
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDL-NPNIILGA 146 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~-~fDlIi~s 146 (169)
++.++.|+||=-|.+++.+.+.+. .+++.|+++. .++.+.+|+..+++.-++. ...++-...+... .+|+|+-+
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~g--pl~~a~~~v~~~~l~~~i~-vr~~dgl~~l~~~d~~d~ivIA 92 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPG--PLESAIRNVKKNNLSERID-VRLGDGLAVLELEDEIDVIVIA 92 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccC--HHHHHHHHHHhcCCcceEE-EeccCCccccCccCCcCEEEEe
Confidence 455699999999999999999775 7999999965 9999999999998875433 4555554444443 78887754
Q ss_pred C
Q 030935 147 D 147 (169)
Q Consensus 147 d 147 (169)
-
T Consensus 93 G 93 (226)
T COG2384 93 G 93 (226)
T ss_pred C
Confidence 3
No 250
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.52 E-value=0.047 Score=43.79 Aligned_cols=95 Identities=24% Similarity=0.203 Sum_probs=54.0
Q ss_pred CeEEEECCC-CCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHH-HhCCcceEEEEEcCCCCcCCCC-CCCcEEEE
Q 030935 72 ANVVELGAG-TSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCE-MNKLNCRVMGLTWGFLDASIFD-LNPNIILG 145 (169)
Q Consensus 72 ~~vLElGcG-tGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~-~n~~~~~~~~l~~~~~~~~~~~-~~fDlIi~ 145 (169)
++|+=|||| --+.++.+++. ++.|+.+|++ +++++.+++-++ ..++..+.. +..++......+ ..||+|+-
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d--~~A~~~a~~lv~~~~~L~~~m~-f~~~d~~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDID--PEANELARRLVASDLGLSKRMS-FITADVLDVTYDLKEYDVVFL 198 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESS--HHHHHHHHHHHH---HH-SSEE-EEES-GGGG-GG----SEEEE
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCC--HHHHHHHHHHHhhcccccCCeE-EEecchhccccccccCCEEEE
Confidence 599999999 66888988864 4579999999 669998888766 333333222 333332221112 48999998
Q ss_pred cCcCC-CCCChHHHHHHHHHhccCC
Q 030935 146 ADVFY-DASGKICAFEILICSLFPI 169 (169)
Q Consensus 146 sd~iy-~~~~~~~l~~~l~~~L~p~ 169 (169)
+-.+. ..+.-..+++.|.+.++||
T Consensus 199 AalVg~~~e~K~~Il~~l~~~m~~g 223 (276)
T PF03059_consen 199 AALVGMDAEPKEEILEHLAKHMAPG 223 (276)
T ss_dssp -TT-S----SHHHHHHHHHHHS-TT
T ss_pred hhhcccccchHHHHHHHHHhhCCCC
Confidence 88887 5577899999999999986
No 251
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=96.45 E-value=0.0051 Score=51.75 Aligned_cols=74 Identities=23% Similarity=0.212 Sum_probs=58.1
Q ss_pred CCcceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcc
Q 030935 45 EEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNC 121 (169)
Q Consensus 45 ~~~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~ 121 (169)
.++|-.-|.+ .+..+...--.-...|..|.|+.||.|-+++.+++.+.+|++.|++ +++++..+.|++.|.+..
T Consensus 225 ~DfskVYWns-RL~~Eherlsg~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLN--pesik~Lk~ni~lNkv~~ 298 (495)
T KOG2078|consen 225 FDFSKVYWNS-RLSHEHERLSGLFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLN--PESIKWLKANIKLNKVDP 298 (495)
T ss_pred EecceEEeec-cchhHHHHHhhccCCcchhhhhhcCcCccccchhhcCcEEEecCCC--HHHHHHHHHhccccccch
Confidence 3567777984 4444433222223367789999999999999999999999999999 679999999999998753
No 252
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.25 E-value=0.024 Score=46.24 Aligned_cols=75 Identities=25% Similarity=0.341 Sum_probs=57.4
Q ss_pred ceEEEEeccccCCcceeecchHHHHHHHHHhccCCCCCCeEEEECCC-CCHHHHHHHH-hCC-eEEEEcCCCcHHHHHHH
Q 030935 34 SFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNM 110 (169)
Q Consensus 34 ~~~i~i~~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcG-tGl~~l~~a~-~ga-~V~~~D~~~~~~~l~~~ 110 (169)
.+=.++.++...+-|+.+=| +-++-+..+......|.+||=+||| .|++++..|+ .|+ +|+.+|..+ .-++.|
T Consensus 135 dfc~KLPd~vs~eeGAl~eP--LsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~--~Rle~A 210 (354)
T KOG0024|consen 135 DFCYKLPDNVSFEEGALIEP--LSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVA--NRLELA 210 (354)
T ss_pred HheeeCCCCCchhhcccccc--hhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCH--HHHHHH
Confidence 44477777777777877766 4455556666667789999999999 7998888777 577 899999995 477777
Q ss_pred HH
Q 030935 111 RR 112 (169)
Q Consensus 111 ~~ 112 (169)
|+
T Consensus 211 k~ 212 (354)
T KOG0024|consen 211 KK 212 (354)
T ss_pred HH
Confidence 76
No 253
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.23 E-value=0.026 Score=41.24 Aligned_cols=47 Identities=19% Similarity=0.113 Sum_probs=39.8
Q ss_pred CeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCc
Q 030935 72 ANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (169)
Q Consensus 72 ~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~ 120 (169)
.+.+|||+|.|.+-+.+++.|. .-++++++ +-++..+|-..-+.++.
T Consensus 74 GklvDlGSGDGRiVlaaar~g~~~a~GvELN--pwLVaysrl~a~R~g~~ 121 (199)
T KOG4058|consen 74 GKLVDLGSGDGRIVLAAARCGLRPAVGVELN--PWLVAYSRLHAWRAGCA 121 (199)
T ss_pred CcEEeccCCCceeehhhhhhCCCcCCceecc--HHHHHHHHHHHHHHhcc
Confidence 4799999999999999999996 79999999 56888888776666654
No 254
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.06 E-value=0.023 Score=43.00 Aligned_cols=60 Identities=17% Similarity=0.093 Sum_probs=42.9
Q ss_pred eecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHH
Q 030935 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRR 112 (169)
Q Consensus 50 ~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~ 112 (169)
+.-+-...|.+.+.+.-. .+|..|||--||+|-.++++.++|-+.+++|++ +..++.|++
T Consensus 172 h~~~kP~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~--~~y~~~a~~ 231 (231)
T PF01555_consen 172 HPTQKPVELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEELGRRYIGIEID--EEYCEIAKK 231 (231)
T ss_dssp -TT-S-HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHTT-EEEEEESS--HHHHHHHHH
T ss_pred eeecCCHHHHHHHHHhhh-ccceeeehhhhccChHHHHHHHcCCeEEEEeCC--HHHHHHhcC
Confidence 344556777777765432 368899999999999999999999999999999 457777753
No 255
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.05 E-value=0.04 Score=44.79 Aligned_cols=60 Identities=7% Similarity=-0.075 Sum_probs=46.3
Q ss_pred HHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhC
Q 030935 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNK 118 (169)
Q Consensus 57 ~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~ 118 (169)
+|.+.+.+.....+|..++|.-+|.|.-+..+++. ..+|++.|.+ +.+++.+++.++...
T Consensus 7 Vll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D--~~Al~~ak~~L~~~~ 68 (305)
T TIGR00006 7 VLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRD--PQAIAFAKERLSDFE 68 (305)
T ss_pred hhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCC--HHHHHHHHHHHhhcC
Confidence 44445555444456779999999999999988875 2589999999 679999998876543
No 256
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=95.98 E-value=0.037 Score=42.61 Aligned_cols=98 Identities=13% Similarity=0.101 Sum_probs=52.7
Q ss_pred eeecchHH--HHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEE
Q 030935 49 LFVWPCSV--ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGL 126 (169)
Q Consensus 49 ~~~W~~~~--~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l 126 (169)
...||.-. .+.+|+.+.+ ++..|-|+|||-+.++..+ ..+..|...|+-.. |. .+..-
T Consensus 52 v~~WP~nPvd~iI~~l~~~~---~~~viaD~GCGdA~la~~~-~~~~~V~SfDLva~-------------n~---~Vtac 111 (219)
T PF05148_consen 52 VKKWPVNPVDVIIEWLKKRP---KSLVIADFGCGDAKLAKAV-PNKHKVHSFDLVAP-------------NP---RVTAC 111 (219)
T ss_dssp HCTSSS-HHHHHHHHHCTS----TTS-EEEES-TT-HHHHH---S---EEEEESS-S-------------ST---TEEES
T ss_pred HhcCCCCcHHHHHHHHHhcC---CCEEEEECCCchHHHHHhc-ccCceEEEeeccCC-------------CC---CEEEe
Confidence 35788744 4556665443 4568999999999998543 23447888888631 11 23323
Q ss_pred EcCCCCcCCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 127 TWGFLDASIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 127 ~~~~~~~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+... -++.+...|++|.+-.+- -.++..+++--.+.|||+
T Consensus 112 dia~--vPL~~~svDv~VfcLSLM-GTn~~~fi~EA~RvLK~~ 151 (219)
T PF05148_consen 112 DIAN--VPLEDESVDVAVFCLSLM-GTNWPDFIREANRVLKPG 151 (219)
T ss_dssp -TTS---S--TT-EEEEEEES----SS-HHHHHHHHHHHEEEE
T ss_pred cCcc--CcCCCCceeEEEEEhhhh-CCCcHHHHHHHHheeccC
Confidence 3222 245567899999765543 467788888888888874
No 257
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.93 E-value=0.017 Score=47.81 Aligned_cols=87 Identities=18% Similarity=0.152 Sum_probs=58.0
Q ss_pred CCeEEEECCCCCHHHHHHHH-hCC-eEEEEcCCCcHHHHHHHHHHHHHh-CCcceEEEEEcCCCCcCC--CCCCCcEEEE
Q 030935 71 GANVVELGAGTSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRRVCEMN-KLNCRVMGLTWGFLDASI--FDLNPNIILG 145 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~-~ga-~V~~~D~~~~~~~l~~~~~n~~~n-~~~~~~~~l~~~~~~~~~--~~~~fDlIi~ 145 (169)
..+|+|-=||||+=|+-.+. .+. +|++.|++ |++++.+++|++.| +.+..+.. .+..... ....||+|=-
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDis--p~Avelik~Nv~~N~~~~~~v~n---~DAN~lm~~~~~~fd~IDi 127 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDIS--PKAVELIKENVRLNSGEDAEVIN---KDANALLHELHRAFDVIDI 127 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCC--HHHHHHHHHHHHhcCcccceeec---chHHHHHHhcCCCccEEec
Confidence 67999999999999997776 455 89999999 56999999999999 33333332 2221111 1257888742
Q ss_pred cCcCCCC-CChHHHHHHHH
Q 030935 146 ADVFYDA-SGKICAFEILI 163 (169)
Q Consensus 146 sd~iy~~-~~~~~l~~~l~ 163 (169)
|++=.+ +.+++.++.+.
T Consensus 128 -DPFGSPaPFlDaA~~s~~ 145 (380)
T COG1867 128 -DPFGSPAPFLDAALRSVR 145 (380)
T ss_pred -CCCCCCchHHHHHHHHhh
Confidence 554333 22455555444
No 258
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=95.79 E-value=0.039 Score=45.64 Aligned_cols=62 Identities=19% Similarity=0.187 Sum_probs=42.5
Q ss_pred HHHHHHHHHhccC---CCCCCeEEEECCCCCHHHHHHHHh----------CCeEEEEcCCCcHHHHHHHHHHHHHhC
Q 030935 55 SVILAEYVWQQRY---RFSGANVVELGAGTSLPGLVAAKV----------GSNVTLTDDSNRIEVLKNMRRVCEMNK 118 (169)
Q Consensus 55 ~~~La~~l~~~~~---~~~~~~vLElGcGtGl~~l~~a~~----------ga~V~~~D~~~~~~~l~~~~~n~~~n~ 118 (169)
+..++.|+.+.-. ......++|+|+|.|.+..-+++. ..++..++.|+ ++.+.-+.+++...
T Consensus 59 Gella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~--~L~~~Qk~~L~~~~ 133 (370)
T COG1565 59 GELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSP--ELRARQKETLKATE 133 (370)
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCH--HHHHHHHHHHhccc
Confidence 6677777776432 223347999999999988755442 34899999994 57776666665443
No 259
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=95.78 E-value=0.05 Score=44.74 Aligned_cols=88 Identities=10% Similarity=-0.109 Sum_probs=63.2
Q ss_pred CeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCcCCC
Q 030935 72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFYD 151 (169)
Q Consensus 72 ~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~iy~ 151 (169)
...+|+|.|.|.+.-.+...-.+|.+++.+. + .+-.++.++. .++ ....|+.....+ +-|+|+.-=++++
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdl-p-~v~~~a~~~~-~gV-----~~v~gdmfq~~P--~~daI~mkWiLhd 248 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDL-P-FVLAAAPYLA-PGV-----EHVAGDMFQDTP--KGDAIWMKWILHD 248 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCCCceeecCH-H-HHHhhhhhhc-CCc-----ceecccccccCC--CcCeEEEEeeccc
Confidence 4789999999988877777666899999884 3 4444444443 332 233455554422 5579999999987
Q ss_pred C--CChHHHHHHHHHhccCC
Q 030935 152 A--SGKICAFEILICSLFPI 169 (169)
Q Consensus 152 ~--~~~~~l~~~l~~~L~p~ 169 (169)
. ++.-++++.+++.|+|+
T Consensus 249 wtDedcvkiLknC~~sL~~~ 268 (342)
T KOG3178|consen 249 WTDEDCVKILKNCKKSLPPG 268 (342)
T ss_pred CChHHHHHHHHHHHHhCCCC
Confidence 6 55788999999999986
No 260
>PRK11524 putative methyltransferase; Provisional
Probab=95.73 E-value=0.054 Score=43.42 Aligned_cols=57 Identities=21% Similarity=0.119 Sum_probs=46.1
Q ss_pred HHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHH
Q 030935 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCE 115 (169)
Q Consensus 56 ~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~ 115 (169)
+.|.+.+.... -.+|..|||--||+|-.++++.+.|-+.+++|++ ++.++.+++.+.
T Consensus 195 ~~L~erlI~~~-S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~--~~Y~~~a~~Rl~ 251 (284)
T PRK11524 195 EALLKRIILAS-SNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEIN--SEYIKMGLRRLD 251 (284)
T ss_pred HHHHHHHHHHh-CCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCC--HHHHHHHHHHHH
Confidence 44555554432 2378899999999999999999999999999999 568898888875
No 261
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=95.72 E-value=0.015 Score=46.96 Aligned_cols=50 Identities=24% Similarity=0.245 Sum_probs=44.4
Q ss_pred CCCeEEEECCCCCHHHH-HHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcc
Q 030935 70 SGANVVELGAGTSLPGL-VAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNC 121 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l-~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~ 121 (169)
.+..|.||=+|.|.+.+ ++.++|| .|.+.|.+ |..++..++|++.|+..+
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwN--p~svEaLrR~~~~N~V~~ 245 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWN--PWSVEALRRNAEANNVMD 245 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecC--HHHHHHHHHHHHhcchHH
Confidence 45689999999999999 8889998 69999999 679999999999998654
No 262
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.61 E-value=0.034 Score=42.63 Aligned_cols=49 Identities=27% Similarity=0.116 Sum_probs=39.6
Q ss_pred hHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC---eEEEEcCCC
Q 030935 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSN 102 (169)
Q Consensus 54 ~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga---~V~~~D~~~ 102 (169)
++..|.+...++.-..++.+|+||||-.|..+..++++.. +|+++|+.+
T Consensus 29 Aa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p 80 (205)
T COG0293 29 AAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP 80 (205)
T ss_pred HHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc
Confidence 5677777777774444678999999999999999998643 499999997
No 263
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.59 E-value=0.023 Score=39.05 Aligned_cols=32 Identities=22% Similarity=0.153 Sum_probs=28.0
Q ss_pred CCeEEEECCCCCHHHHHHHHhCCeEEEEcCCC
Q 030935 71 GANVVELGAGTSLPGLVAAKVGSNVTLTDDSN 102 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~ 102 (169)
....+|||||+|++--.+.+-|.+=.++|.-.
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R~ 90 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSEGYPGWGIDARR 90 (112)
T ss_pred CCceEEccCCchHHHHHHHhCCCCcccccccc
Confidence 44799999999999999999998888888864
No 264
>PRK13699 putative methylase; Provisional
Probab=95.56 E-value=0.081 Score=41.13 Aligned_cols=59 Identities=12% Similarity=-0.030 Sum_probs=45.7
Q ss_pred HHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHh
Q 030935 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN 117 (169)
Q Consensus 56 ~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n 117 (169)
..|.+.+.+... .+|..|||--||+|..++++.+.|-+.+++|++ ++..+.+++.++..
T Consensus 150 ~~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~--~~y~~~~~~r~~~~ 208 (227)
T PRK13699 150 VTSLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQSGRRYIGIELL--EQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecC--HHHHHHHHHHHHHH
Confidence 444455443322 267899999999999999999999999999999 56888887777543
No 265
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=95.54 E-value=0.5 Score=36.76 Aligned_cols=118 Identities=17% Similarity=0.126 Sum_probs=64.1
Q ss_pred CCcceeecch-HHHHHHHHHhc---cCCCCCCeEEEECCCCCHHHHHHHH-hC--CeEEEEcCCCcHHHHHHHHHHHHHh
Q 030935 45 EEYGLFVWPC-SVILAEYVWQQ---RYRFSGANVVELGAGTSLPGLVAAK-VG--SNVTLTDDSNRIEVLKNMRRVCEMN 117 (169)
Q Consensus 45 ~~~g~~~W~~-~~~La~~l~~~---~~~~~~~~vLElGcGtGl~~l~~a~-~g--a~V~~~D~~~~~~~l~~~~~n~~~n 117 (169)
...+.|+|.. --.||..+... ....+|.+||=||+.+|..--.++- .| ..|.+++.++ +..+.+-.-++ .
T Consensus 44 ~~~eYR~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~--r~~rdL~~la~-~ 120 (229)
T PF01269_consen 44 KKVEYRVWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSP--RSMRDLLNLAK-K 120 (229)
T ss_dssp --EEEEEE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSH--HHHHHHHHHHH-H
T ss_pred CccceeecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecc--hhHHHHHHHhc-c
Confidence 3458899976 23455555443 3456788999999999977655555 34 3899999995 45554433222 2
Q ss_pred CCcceEEEEEcCCCCc-C--CCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 118 KLNCRVMGLTWGFLDA-S--IFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 118 ~~~~~~~~l~~~~~~~-~--~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.-+ +..+.-+.... . ..-+.+|+|++ |+- .+.+.+-+..+....||++
T Consensus 121 R~N--IiPIl~DAr~P~~Y~~lv~~VDvI~~-DVa-Qp~Qa~I~~~Na~~fLk~g 171 (229)
T PF01269_consen 121 RPN--IIPILEDARHPEKYRMLVEMVDVIFQ-DVA-QPDQARIAALNARHFLKPG 171 (229)
T ss_dssp STT--EEEEES-TTSGGGGTTTS--EEEEEE-E-S-STTHHHHHHHHHHHHEEEE
T ss_pred CCc--eeeeeccCCChHHhhcccccccEEEe-cCC-ChHHHHHHHHHHHhhccCC
Confidence 222 22232222111 0 11237888885 665 4566666777777777764
No 266
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=95.48 E-value=0.054 Score=43.54 Aligned_cols=92 Identities=14% Similarity=0.066 Sum_probs=62.2
Q ss_pred cceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh-C--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceE
Q 030935 47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRV 123 (169)
Q Consensus 47 ~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~ 123 (169)
+-..++..+-.++.+++. ..+|.+|||++||.|.=+..++.. + ..|++.|++ +.=+..++.|++..|.....
T Consensus 65 G~~~vQd~sS~l~~~~L~---~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~--~~Rl~~l~~~~~r~g~~~v~ 139 (283)
T PF01189_consen 65 GLFYVQDESSQLVALALD---PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDIS--PKRLKRLKENLKRLGVFNVI 139 (283)
T ss_dssp TSEEEHHHHHHHHHHHHT---TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESS--HHHHHHHHHHHHHTT-SSEE
T ss_pred CcEEeccccccccccccc---ccccccccccccCCCCceeeeeecccchhHHHHhccC--HHHHHHHHHHHHhcCCceEE
Confidence 445667666666665553 336789999999999888877774 2 389999999 45888999999988876432
Q ss_pred EEEEcCCCCc---CCCCCCCcEEEE
Q 030935 124 MGLTWGFLDA---SIFDLNPNIILG 145 (169)
Q Consensus 124 ~~l~~~~~~~---~~~~~~fDlIi~ 145 (169)
. .. .+... ......||.|+.
T Consensus 140 ~-~~-~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 140 V-IN-ADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp E-EE-SHHHHHHHHHHTTTEEEEEE
T ss_pred E-Ee-eccccccccccccccchhhc
Confidence 2 22 22111 112336999995
No 267
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=94.80 E-value=0.21 Score=39.25 Aligned_cols=43 Identities=14% Similarity=0.111 Sum_probs=30.3
Q ss_pred CeEEEECCCCCHHHHHHHHh----------CCeEEEEcCCCcHHHHHHHHHHHHH
Q 030935 72 ANVVELGAGTSLPGLVAAKV----------GSNVTLTDDSNRIEVLKNMRRVCEM 116 (169)
Q Consensus 72 ~~vLElGcGtGl~~l~~a~~----------ga~V~~~D~~~~~~~l~~~~~n~~~ 116 (169)
-+|+|+|+|+|.++.-+++. ..+++.+|.|+. +.+..++++..
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~--L~~~Q~~~L~~ 72 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPY--LRERQKERLSE 72 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCC--CHHHHHHHCCC
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHH--HHHHHHHHhhh
Confidence 58999999999998766542 127999999974 66666666543
No 268
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=94.79 E-value=0.031 Score=44.84 Aligned_cols=66 Identities=12% Similarity=0.119 Sum_probs=44.5
Q ss_pred eEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC----CCCCCCcEEEEcC
Q 030935 73 NVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS----IFDLNPNIILGAD 147 (169)
Q Consensus 73 ~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~----~~~~~fDlIi~sd 147 (169)
+++||-||.|.+++.+.+.|. .|.++|++ +.+.+.-+.|.. ....++.... +.. .+|++++.-
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~--~~a~~~y~~N~~---------~~~~~Di~~~~~~~l~~-~~D~l~ggp 69 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEID--PDACETYKANFP---------EVICGDITEIDPSDLPK-DVDLLIGGP 69 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESS--HHHHHHHHHHHT---------EEEESHGGGCHHHHHHH-T-SEEEEE-
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecC--HHHHHhhhhccc---------ccccccccccccccccc-cceEEEecc
Confidence 689999999999999999997 59999999 457777777765 1223333221 122 599999988
Q ss_pred cCC
Q 030935 148 VFY 150 (169)
Q Consensus 148 ~iy 150 (169)
++-
T Consensus 70 PCQ 72 (335)
T PF00145_consen 70 PCQ 72 (335)
T ss_dssp --T
T ss_pred CCc
Confidence 765
No 269
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=94.64 E-value=0.14 Score=39.67 Aligned_cols=43 Identities=14% Similarity=0.048 Sum_probs=30.7
Q ss_pred CeEEEECCCCCHHHHHH-HHhC---CeEEEEcCCCcHHHHHHHHHHHHH
Q 030935 72 ANVVELGAGTSLPGLVA-AKVG---SNVTLTDDSNRIEVLKNMRRVCEM 116 (169)
Q Consensus 72 ~~vLElGcGtGl~~l~~-a~~g---a~V~~~D~~~~~~~l~~~~~n~~~ 116 (169)
-++.|=+||+|.+--.+ ...+ ..|+++|++ +++++.|++|+.+
T Consensus 53 ~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId--~~aL~lA~kNL~L 99 (246)
T PF11599_consen 53 YTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDID--EDALELARKNLSL 99 (246)
T ss_dssp EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES---HHHHHHHHHHHHC
T ss_pred eeeeccCCCccHHHHHHHHhhhHHHHhHhcccCC--HHHHHHHHHhhhh
Confidence 47999999999654333 3333 279999999 5799999999754
No 270
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.63 E-value=0.54 Score=40.98 Aligned_cols=42 Identities=31% Similarity=0.417 Sum_probs=33.5
Q ss_pred CCCCeEEEECCC-CCHHHHHHHH-hCCeEEEEcCCCcHHHHHHHHH
Q 030935 69 FSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRR 112 (169)
Q Consensus 69 ~~~~~vLElGcG-tGl~~l~~a~-~ga~V~~~D~~~~~~~l~~~~~ 112 (169)
.++.+|+=+||| .|+.++..|+ +|++|+++|.++ +-++.+++
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~--~rle~aes 206 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP--EVAEQVES 206 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHH
Confidence 468899999999 7888887776 689999999994 46666554
No 271
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=94.51 E-value=0.1 Score=40.80 Aligned_cols=79 Identities=18% Similarity=0.139 Sum_probs=40.0
Q ss_pred eEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHH---HHHhCCc----ceEEEEEcCCCCcC--CCCCCCcEE
Q 030935 73 NVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRV---CEMNKLN----CRVMGLTWGFLDAS--IFDLNPNII 143 (169)
Q Consensus 73 ~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n---~~~n~~~----~~~~~l~~~~~~~~--~~~~~fDlI 143 (169)
+|||.-+|-|.=++.+|..|++|++++.++ -+....+.- .....-. .+...+.+++..+. ....+||+|
T Consensus 78 ~VLDaTaGLG~Da~vlA~~G~~V~~lErsp--via~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVV 155 (234)
T PF04445_consen 78 SVLDATAGLGRDAFVLASLGCKVTGLERSP--VIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVV 155 (234)
T ss_dssp -EEETT-TTSHHHHHHHHHT--EEEEE--H--HHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEE
T ss_pred EEEECCCcchHHHHHHHccCCeEEEEECCH--HHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEE
Confidence 899999999999999999999999999994 344333332 2222111 12234555654332 234599999
Q ss_pred EEcCcCCCCCC
Q 030935 144 LGADVFYDASG 154 (169)
Q Consensus 144 i~sd~iy~~~~ 154 (169)
.. |+.|....
T Consensus 156 Y~-DPMFp~~~ 165 (234)
T PF04445_consen 156 YF-DPMFPERK 165 (234)
T ss_dssp EE---S-----
T ss_pred EE-CCCCCCcc
Confidence 97 88886543
No 272
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=94.46 E-value=0.028 Score=45.02 Aligned_cols=108 Identities=19% Similarity=0.123 Sum_probs=68.7
Q ss_pred CCcceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEE
Q 030935 45 EEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVM 124 (169)
Q Consensus 45 ~~~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~ 124 (169)
..+-++.||-.. +|+...+ .+..++|.|||.|-....- -...+++.|++. .++.-+++ .+.+ .+
T Consensus 26 s~tr~~~Wp~v~---qfl~~~~---~gsv~~d~gCGngky~~~~--p~~~~ig~D~c~--~l~~~ak~----~~~~-~~- 89 (293)
T KOG1331|consen 26 SATRAAPWPMVR---QFLDSQP---TGSVGLDVGCGNGKYLGVN--PLCLIIGCDLCT--GLLGGAKR----SGGD-NV- 89 (293)
T ss_pred cccccCccHHHH---HHHhccC---CcceeeecccCCcccCcCC--Ccceeeecchhh--hhcccccc----CCCc-ee-
Confidence 457788999754 3444333 4789999999998433211 223689999984 35555443 1221 11
Q ss_pred EEEcCCCCcCCCCCCCcEEEEcCcCCCCCCh---HHHHHHHHHhccCC
Q 030935 125 GLTWGFLDASIFDLNPNIILGADVFYDASGK---ICAFEILICSLFPI 169 (169)
Q Consensus 125 ~l~~~~~~~~~~~~~fDlIi~sd~iy~~~~~---~~l~~~l~~~L~p~ 169 (169)
........+..+..||.+++.-+++|.... ..+++.+.+.|+|+
T Consensus 90 -~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpg 136 (293)
T KOG1331|consen 90 -CRADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPG 136 (293)
T ss_pred -ehhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCC
Confidence 112223345556799999999999988554 55778888888875
No 273
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=94.29 E-value=0.12 Score=43.13 Aligned_cols=94 Identities=15% Similarity=0.071 Sum_probs=60.2
Q ss_pred CCeEEEECCCCCHHHHHHHHhC-C-eEEEEcCCCcHHHHHHHHHHHHH---hCCc-----ceEEEEEcCCCCcCCCCCCC
Q 030935 71 GANVVELGAGTSLPGLVAAKVG-S-NVTLTDDSNRIEVLKNMRRVCEM---NKLN-----CRVMGLTWGFLDASIFDLNP 140 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~~g-a-~V~~~D~~~~~~~l~~~~~n~~~---n~~~-----~~~~~l~~~~~~~~~~~~~f 140 (169)
-.+||=||-|-|+....+.|.- . +|+.+|++ |+|++.+++|... |+.. +.+..-+...+... ....|
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLD--P~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~-a~~~f 366 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLD--PRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRT-AADMF 366 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEEEecC--HHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHh-hcccc
Confidence 3489999999999999998875 3 89999999 6799999977633 3321 22222222222211 23489
Q ss_pred cEEEEcCcCC-CCCC-----hHHHHHHHHHhccC
Q 030935 141 NIILGADVFY-DASG-----KICAFEILICSLFP 168 (169)
Q Consensus 141 DlIi~sd~iy-~~~~-----~~~l~~~l~~~L~p 168 (169)
|+||- |..= +... -.++.+.+++.|++
T Consensus 367 D~vIV-Dl~DP~tps~~rlYS~eFY~ll~~~l~e 399 (508)
T COG4262 367 DVVIV-DLPDPSTPSIGRLYSVEFYRLLSRHLAE 399 (508)
T ss_pred cEEEE-eCCCCCCcchhhhhhHHHHHHHHHhcCc
Confidence 99995 4332 1111 24577777777776
No 274
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=94.27 E-value=0.34 Score=38.67 Aligned_cols=95 Identities=13% Similarity=0.069 Sum_probs=59.4
Q ss_pred eecchH--HHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEE
Q 030935 50 FVWPCS--VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLT 127 (169)
Q Consensus 50 ~~W~~~--~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~ 127 (169)
.-||-. ..+.++|...+ ....|-|+|||-+-++. ....+|...|+-. .+-++...+
T Consensus 161 ~kWP~nPld~ii~~ik~r~---~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a----------------~~~~V~~cD 218 (325)
T KOG3045|consen 161 KKWPENPLDVIIRKIKRRP---KNIVIADFGCGEAKIAS---SERHKVHSFDLVA----------------VNERVIACD 218 (325)
T ss_pred HhCCCChHHHHHHHHHhCc---CceEEEecccchhhhhh---ccccceeeeeeec----------------CCCceeecc
Confidence 346652 23444444332 45589999999987765 3334788888752 112233333
Q ss_pred cCCCCcCCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 128 WGFLDASIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 128 ~~~~~~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
..+ -++.+.+.|+++..-.+ .-.++..+++-..+.|+||
T Consensus 219 m~~--vPl~d~svDvaV~CLSL-Mgtn~~df~kEa~RiLk~g 257 (325)
T KOG3045|consen 219 MRN--VPLEDESVDVAVFCLSL-MGTNLADFIKEANRILKPG 257 (325)
T ss_pred ccC--CcCccCcccEEEeeHhh-hcccHHHHHHHHHHHhccC
Confidence 333 24556799999864433 3578888999999999886
No 275
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.17 E-value=0.16 Score=41.64 Aligned_cols=71 Identities=14% Similarity=0.146 Sum_probs=48.6
Q ss_pred CeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc---CCCCC-CCcEEEEc
Q 030935 72 ANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA---SIFDL-NPNIILGA 146 (169)
Q Consensus 72 ~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~---~~~~~-~fDlIi~s 146 (169)
.+++||-||.|.+.+.+...|. -+.++|+++ ..++.-+.|... .. ..+++..+ ..... .+|+|++.
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~--~a~~ty~~n~~~----~~---~~~~di~~~~~~~~~~~~~DvligG 74 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDP--PAVATYKANFPH----GD---IILGDIKELDGEALRKSDVDVLIGG 74 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCH--HHHHHHHHhCCC----Cc---eeechHhhcChhhccccCCCEEEeC
Confidence 4899999999999999999998 489999994 477666665542 11 12222221 11112 78999998
Q ss_pred CcCCC
Q 030935 147 DVFYD 151 (169)
Q Consensus 147 d~iy~ 151 (169)
-++..
T Consensus 75 pPCQ~ 79 (328)
T COG0270 75 PPCQD 79 (328)
T ss_pred CCCcc
Confidence 88753
No 276
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=93.98 E-value=0.43 Score=41.32 Aligned_cols=78 Identities=9% Similarity=-0.039 Sum_probs=54.5
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-C-----CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc-CC-----CC
Q 030935 70 SGANVVELGAGTSLPGLVAAKV-G-----SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-SI-----FD 137 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~-g-----a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~-~~-----~~ 137 (169)
+..+|.|--||+|..-+.+++. + ....+.+++ +.....++.|.-.++++. ......++... +. ..
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~--~~t~~l~~mN~~lhgi~~-~~~i~~~dtl~~~~~~~~~~~ 262 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEIN--DTTYRLAKMNLILHGIEG-DANIRHGDTLSNPKHDDKDDK 262 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCC--HHHHHHHHHHHHHhCCCc-cccccccccccCCcccccCCc
Confidence 4559999999999776655542 1 348899988 569999999999999875 22233333222 11 22
Q ss_pred CCCcEEEEcCcCC
Q 030935 138 LNPNIILGADVFY 150 (169)
Q Consensus 138 ~~fDlIi~sd~iy 150 (169)
.+||+|+++.+..
T Consensus 263 ~~~D~viaNPPf~ 275 (489)
T COG0286 263 GKFDFVIANPPFS 275 (489)
T ss_pred cceeEEEeCCCCC
Confidence 4799999988775
No 277
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=93.96 E-value=0.0083 Score=40.52 Aligned_cols=90 Identities=17% Similarity=0.065 Sum_probs=30.7
Q ss_pred EEECCCCCHHHHHHHHh---C--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC---CCCCCCcEEEEc
Q 030935 75 VELGAGTSLPGLVAAKV---G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS---IFDLNPNIILGA 146 (169)
Q Consensus 75 LElGcGtGl~~l~~a~~---g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~---~~~~~fDlIi~s 146 (169)
||+|+..|..++.+++. . .+++++|..+ . .+..+++++..+...++. +..++..+. ....++|+|+-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~--~-~~~~~~~~~~~~~~~~~~-~~~g~s~~~l~~~~~~~~dli~i- 75 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFP--G-DEQAQEIIKKAGLSDRVE-FIQGDSPDFLPSLPDGPIDLIFI- 75 (106)
T ss_dssp --------------------------EEEESS---------------GGG-BTEE-EEES-THHHHHHHHH--EEEEEE-
T ss_pred CccccccccccccccccccccccCCEEEEECCC--c-ccccchhhhhcCCCCeEE-EEEcCcHHHHHHcCCCCEEEEEE-
Confidence 79999999988877653 2 2799999985 1 334444444444443332 444543221 12358999985
Q ss_pred CcCCCCCChHHHHHHHHHhccCC
Q 030935 147 DVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 147 d~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
|--|..+....-++.+...|+|+
T Consensus 76 Dg~H~~~~~~~dl~~~~~~l~~g 98 (106)
T PF13578_consen 76 DGDHSYEAVLRDLENALPRLAPG 98 (106)
T ss_dssp ES---HHHHHHHHHHHGGGEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHcCCC
Confidence 66655556666777777777764
No 278
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=93.92 E-value=0.11 Score=40.61 Aligned_cols=46 Identities=22% Similarity=0.114 Sum_probs=31.5
Q ss_pred HHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCC
Q 030935 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSN 102 (169)
Q Consensus 57 ~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~ 102 (169)
.|+.++.+..+..+..+++|.-||+|.+++.+++.+.+|+.-|+++
T Consensus 7 ~l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~ 52 (260)
T PF02086_consen 7 KLAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGKRVIINDINP 52 (260)
T ss_dssp GGHHHHHHHS-S-S-SEEEETT-TTSHHHHCC---SSEEEEEES-H
T ss_pred HHHHHHHHHcCCCCCCEEEEEecchhHHHHHhcccccceeeeechH
Confidence 3566777665433567999999999999999888888999999994
No 279
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=93.61 E-value=0.27 Score=34.81 Aligned_cols=43 Identities=26% Similarity=0.262 Sum_probs=30.2
Q ss_pred HHHHHHHhccCCCCCCeEEEECCCCC-HHHHHHHHhCCeEEEEcCCC
Q 030935 57 ILAEYVWQQRYRFSGANVVELGAGTS-LPGLVAAKVGSNVTLTDDSN 102 (169)
Q Consensus 57 ~La~~l~~~~~~~~~~~vLElGcGtG-l~~l~~a~~ga~V~~~D~~~ 102 (169)
.+|+|+.++. ...+|+|+|-|.= -++..+++.|..|++||+.+
T Consensus 3 ~~a~~ia~~~---~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~ 46 (127)
T PF03686_consen 3 DFAEYIARLN---NYGKIVEVGIGFNPEVAKKLKERGFDVIATDINP 46 (127)
T ss_dssp HHHHHHHHHS----SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-
T ss_pred hHHHHHHHhC---CCCcEEEECcCCCHHHHHHHHHcCCcEEEEECcc
Confidence 5788887653 2349999999955 66778888999999999996
No 280
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.42 E-value=0.16 Score=41.32 Aligned_cols=69 Identities=14% Similarity=0.010 Sum_probs=44.7
Q ss_pred EEEECCCCCHHHHHHHHhCCe-EEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCcCC
Q 030935 74 VVELGAGTSLPGLVAAKVGSN-VTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFY 150 (169)
Q Consensus 74 vLElGcGtGl~~l~~a~~ga~-V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~iy 150 (169)
|+||.||.|.+++.+.+.|.+ +.++|+++ .+.+.-+.|....-....+..+... . -..+|+++++-++-
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~--~a~~ty~~N~~~~~~~~Di~~~~~~----~--~~~~dvl~gg~PCq 70 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDK--YAQKTYEANFGNKVPFGDITKISPS----D--IPDFDILLGGFPCQ 70 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCH--HHHHHHHHhCCCCCCccChhhhhhh----h--CCCcCEEEecCCCc
Confidence 689999999999999999986 56799994 4777777765321111111111111 0 12579999887764
No 281
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=93.41 E-value=0.32 Score=38.38 Aligned_cols=71 Identities=11% Similarity=0.011 Sum_probs=47.4
Q ss_pred CCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEc
Q 030935 71 GANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~s 146 (169)
..+|+|||||.==+++..... ++.+++.|++ ..+++.+..-+...+...++... +......+...|+.+.-
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID--~~~ve~l~~~l~~l~~~~~~~v~---Dl~~~~~~~~~DlaLll 178 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDID--SQLVEFLNAFLAVLGVPHDARVR---DLLSDPPKEPADLALLL 178 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESB--HHHHHHHHHHHHHTT-CEEEEEE----TTTSHTTSEESEEEEE
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCC--HHHHHHHHHHHHhhCCCcceeEe---eeeccCCCCCcchhhHH
Confidence 569999999988777755443 4699999999 56999998888877776654433 43333344466777753
No 282
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=92.89 E-value=0.53 Score=39.60 Aligned_cols=87 Identities=13% Similarity=0.032 Sum_probs=49.8
Q ss_pred CCeEEEECCCCCHHHHHHHHh------------C-----CeEEEEcCCCcH--HHHHHHH---HHH---H----HhCCcc
Q 030935 71 GANVVELGAGTSLPGLVAAKV------------G-----SNVTLTDDSNRI--EVLKNMR---RVC---E----MNKLNC 121 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~~------------g-----a~V~~~D~~~~~--~~l~~~~---~n~---~----~n~~~~ 121 (169)
.-+|+|+|||+|..++.+... + .+|...|+..+. .+....- +.+ . ..+...
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 448999999999887655331 1 368888887540 1222211 100 0 011111
Q ss_pred eEEEEEcCCCCcCCC-CCCCcEEEEcCcCCCCCChHH
Q 030935 122 RVMGLTWGFLDASIF-DLNPNIILGADVFYDASGKIC 157 (169)
Q Consensus 122 ~~~~l~~~~~~~~~~-~~~fDlIi~sd~iy~~~~~~~ 157 (169)
-+....-|.+...++ +.+.+++.++-.+||....+.
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~ 180 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPE 180 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCch
Confidence 123333355544444 458999999999999876554
No 283
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=92.63 E-value=0.47 Score=33.12 Aligned_cols=86 Identities=26% Similarity=0.275 Sum_probs=54.0
Q ss_pred HHHHHHhccCCCCCCeEEEECCCCC-HHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCC
Q 030935 58 LAEYVWQQRYRFSGANVVELGAGTS-LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF 136 (169)
Q Consensus 58 La~~l~~~~~~~~~~~vLElGcGtG-l~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~ 136 (169)
+++|+.... -+| +|.|+|.|-= -++-.++++|..|++||++++ +.. .++ ++. -++...+
T Consensus 4 ~a~~iAre~--~~g-kVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~---------~a~-~g~--~~v---~DDitnP-- 63 (129)
T COG1255 4 VAEYIAREN--ARG-KVVEVGIGFFLDVAKRLAERGFDVLATDINEK---------TAP-EGL--RFV---VDDITNP-- 63 (129)
T ss_pred HHHHHHHHh--cCC-cEEEEccchHHHHHHHHHHcCCcEEEEecccc---------cCc-ccc--eEE---EccCCCc--
Confidence 455555332 133 9999999854 457788889999999999962 111 232 222 2233222
Q ss_pred CCCCcEEEEcCcCCCCCChHHHHHHHHHh
Q 030935 137 DLNPNIILGADVFYDASGKICAFEILICS 165 (169)
Q Consensus 137 ~~~fDlIi~sd~iy~~~~~~~l~~~l~~~ 165 (169)
..-+=-++|.+|.....+.+.+.+.+.
T Consensus 64 --~~~iY~~A~lIYSiRpppEl~~~ildv 90 (129)
T COG1255 64 --NISIYEGADLIYSIRPPPELQSAILDV 90 (129)
T ss_pred --cHHHhhCccceeecCCCHHHHHHHHHH
Confidence 223334688899998888888877653
No 284
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=92.33 E-value=0.45 Score=38.94 Aligned_cols=97 Identities=12% Similarity=-0.013 Sum_probs=59.5
Q ss_pred CCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHH--HHHHHHHH--hCC---------------cceEEE------
Q 030935 71 GANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLK--NMRRVCEM--NKL---------------NCRVMG------ 125 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~--~~~~n~~~--n~~---------------~~~~~~------ 125 (169)
..+||==|||.|.++.-++..|..+-+-+.+-- |+- .-.-|.-. |.. +.++..
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~--Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~ 228 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFKCQGNEFSYF--MLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDI 228 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcccccccHHHHH--HHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccc
Confidence 457999999999999999999999888888732 332 11112111 110 000000
Q ss_pred -------------EEcCCCCcCCCC----CCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 126 -------------LTWGFLDASIFD----LNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 126 -------------l~~~~~~~~~~~----~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
...|++.+-... ..||+|+..=.|=...+.-..+.+|...|+||
T Consensus 229 ~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~G 289 (369)
T KOG2798|consen 229 HPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPG 289 (369)
T ss_pred cccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCC
Confidence 111333222222 25999998744445567788899999999986
No 285
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=92.27 E-value=0.51 Score=39.60 Aligned_cols=38 Identities=21% Similarity=0.331 Sum_probs=30.4
Q ss_pred CeEEEECCCCCHHHHHHHH-hCCeEEEEcCCCcHHHHHHHH
Q 030935 72 ANVVELGAGTSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 72 ~~vLElGcGtGl~~l~~a~-~ga~V~~~D~~~~~~~l~~~~ 111 (169)
..|+|+|+|-|.++.+++- .|-.|.++|.+. ...+.++
T Consensus 155 ~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq--~~~~ra~ 193 (476)
T KOG2651|consen 155 DQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQ--RLVERAQ 193 (476)
T ss_pred CeeEEcCCCchHHHHHHhhccCceEEEeccch--HHHHHHH
Confidence 4799999999999998875 566999999995 3544443
No 286
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=91.77 E-value=1.1 Score=35.86 Aligned_cols=95 Identities=21% Similarity=0.176 Sum_probs=52.9
Q ss_pred eEEEECCC---CCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCC-cceEEEEEcCCCCc--------CCCC-
Q 030935 73 NVVELGAG---TSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDA--------SIFD- 137 (169)
Q Consensus 73 ~vLElGcG---tGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~-~~~~~~l~~~~~~~--------~~~~- 137 (169)
..|||||| .|.+-..+.+. .++|+-+|.+ |-.+..++.-+..+.- ...+..-+..+... ...+
T Consensus 71 QFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~D--Pvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~ 148 (267)
T PF04672_consen 71 QFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDND--PVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDF 148 (267)
T ss_dssp EEEEET--S--SS-HHHHHHHH-TT-EEEEEESS--HHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred eEEEcccCCCCCCCHhHHHHhhCCCceEEEECCC--chHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence 69999999 45555544332 5699999999 5688888877665532 12233333322111 1111
Q ss_pred CCCcEEEEcCcCCCC---CChHHHHHHHHHhccCC
Q 030935 138 LNPNIILGADVFYDA---SGKICAFEILICSLFPI 169 (169)
Q Consensus 138 ~~fDlIi~sd~iy~~---~~~~~l~~~l~~~L~p~ 169 (169)
.++=.++...++++. ++...+++.+.+.|.||
T Consensus 149 ~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapG 183 (267)
T PF04672_consen 149 DRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPG 183 (267)
T ss_dssp TS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT
T ss_pred CCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCC
Confidence 133356667888766 56788999999999987
No 287
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=91.69 E-value=1.1 Score=37.12 Aligned_cols=45 Identities=27% Similarity=0.272 Sum_probs=32.9
Q ss_pred cCCCCCCeEEEECCC-CCHHHHHHHH-hCCeEEEEcCCCcHHHHHHHHH
Q 030935 66 RYRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRR 112 (169)
Q Consensus 66 ~~~~~~~~vLElGcG-tGl~~l~~a~-~ga~V~~~D~~~~~~~l~~~~~ 112 (169)
....+|++|+=.|+| .|..++.+|+ +|++|+++|.++ +-++.+++
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~--~K~e~a~~ 208 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSE--EKLELAKK 208 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCCh--HHHHHHHH
Confidence 345578999999888 3455666676 789999999995 35555554
No 288
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=91.56 E-value=0.29 Score=37.28 Aligned_cols=35 Identities=20% Similarity=0.005 Sum_probs=29.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhC-C--eEEEEcCCC
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKVG-S--NVTLTDDSN 102 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~g-a--~V~~~D~~~ 102 (169)
..++.+|||+||..|..+..+.++. . .|.++|+-.
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh 104 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH 104 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee
Confidence 3478899999999999999998864 2 699999864
No 289
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=91.25 E-value=0.26 Score=39.28 Aligned_cols=47 Identities=21% Similarity=0.294 Sum_probs=38.3
Q ss_pred HHHHHHHHhc-----cCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCC
Q 030935 56 VILAEYVWQQ-----RYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSN 102 (169)
Q Consensus 56 ~~La~~l~~~-----~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~ 102 (169)
+.|-.|+... ....+|+.+.||-+|||++|-.+.+.|..|++-|+..
T Consensus 8 ~~LlsFi~~~i~~~~k~~~s~k~f~DiFaGtGVV~~~fkk~~n~iiaNDle~ 59 (330)
T COG3392 8 YKLLSFIKENIHEVKKEDLSGKIFCDIFAGTGVVGRFFKKAGNKIIANDLEY 59 (330)
T ss_pred HHHHHHHHHHHHHHhhcccCCCeeeeeccCccHHHHHHHHhcchhhhchHHH
Confidence 4555666543 3456788999999999999999999999999999864
No 290
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=91.16 E-value=0.8 Score=39.40 Aligned_cols=69 Identities=19% Similarity=0.207 Sum_probs=43.9
Q ss_pred eEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHH-HHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEc
Q 030935 73 NVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLK-NMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (169)
Q Consensus 73 ~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~-~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~s 146 (169)
++|.+|||.--+...+-+-|. .|+.+|+|+. .++ ....|...+ ...+....+.. ...+.++.||+||.-
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V--~V~~m~~~~~~~~-~~~~~~~~d~~--~l~fedESFdiVIdk 121 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSV--VVAAMQVRNAKER-PEMQMVEMDMD--QLVFEDESFDIVIDK 121 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHH--HHHHHHhccccCC-cceEEEEecch--hccCCCcceeEEEec
Confidence 899999999999998888887 6999999963 444 333333211 11222222222 123455689998853
No 291
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=91.09 E-value=0.31 Score=40.51 Aligned_cols=98 Identities=14% Similarity=0.115 Sum_probs=58.4
Q ss_pred cCCCCCCeEEEECCCCCHHHHHHHHhCC---eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCC--CC---cCCC-
Q 030935 66 RYRFSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGF--LD---ASIF- 136 (169)
Q Consensus 66 ~~~~~~~~vLElGcGtGl~~l~~a~~ga---~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~--~~---~~~~- 136 (169)
.+.++.++|||+|.|.|....++-..-. .++.++.++ .+...-..++.|-.. ...+|.. +. .++.
T Consensus 109 ~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp---~lrkV~~tl~~nv~t---~~td~r~s~vt~dRl~lp~ 182 (484)
T COG5459 109 VPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASP---ALRKVGDTLAENVST---EKTDWRASDVTEDRLSLPA 182 (484)
T ss_pred CCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCH---HHHHHHHHHHhhccc---ccCCCCCCccchhccCCCc
Confidence 3567888999999998865444433322 677788774 555555555555322 1133432 11 1222
Q ss_pred CCCCcEEEEcCcCCCCCC---hHHHHHHHHHhccCC
Q 030935 137 DLNPNIILGADVFYDASG---KICAFEILICSLFPI 169 (169)
Q Consensus 137 ~~~fDlIi~sd~iy~~~~---~~~l~~~l~~~L~p~ 169 (169)
...|++|+..|=+-.... +...++.+...++||
T Consensus 183 ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~g 218 (484)
T COG5459 183 ADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPG 218 (484)
T ss_pred cceeehhhhhhhhccccCcchHHHHHHHHHHhccCC
Confidence 237899998886665543 344677777777765
No 292
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=90.86 E-value=2.4 Score=36.02 Aligned_cols=83 Identities=11% Similarity=0.065 Sum_probs=55.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHH-hC--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceE-EEEEcCCCCcCCCCCCCcEE
Q 030935 68 RFSGANVVELGAGTSLPGLVAAK-VG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRV-MGLTWGFLDASIFDLNPNII 143 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~-~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~-~~l~~~~~~~~~~~~~fDlI 143 (169)
..+|.+|||+.|-.|.=+..+|. +. ..|++.|.+.. -+..++.|+++.|....+ ..++-..+....++.+||=|
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~--r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~fDRV 316 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNEN--RLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGSFDRV 316 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchH--HHHHHHHHHHHhCCCceEEEccCcccccccccCccccee
Confidence 44788999999998866555544 32 27999999964 889999999999876443 22322222222233489998
Q ss_pred E----EcC--cCCCC
Q 030935 144 L----GAD--VFYDA 152 (169)
Q Consensus 144 i----~sd--~iy~~ 152 (169)
+ ||- +++-.
T Consensus 317 LLDAPCSGtgvi~K~ 331 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKD 331 (460)
T ss_pred eecCCCCCCcccccc
Confidence 8 555 55533
No 293
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=90.75 E-value=0.71 Score=36.71 Aligned_cols=42 Identities=24% Similarity=0.171 Sum_probs=30.7
Q ss_pred HHHhccCCCCCCeEEEECCCCCHHHHHHHHhC-------CeEEEEcCCC
Q 030935 61 YVWQQRYRFSGANVVELGAGTSLPGLVAAKVG-------SNVTLTDDSN 102 (169)
Q Consensus 61 ~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g-------a~V~~~D~~~ 102 (169)
.|.+..-..++..++|+|||.|.+|.++++.- ..++++|...
T Consensus 9 ~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 9 NLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred HHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 34433323355689999999999999888743 3799999864
No 294
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=90.51 E-value=1.5 Score=36.05 Aligned_cols=86 Identities=13% Similarity=0.068 Sum_probs=45.3
Q ss_pred CCeEEEECCCCCHHHHHHHHh------------C------CeEEEEcCCCc--HHHHHHHHHHHHH-hCCcceEEEEEcC
Q 030935 71 GANVVELGAGTSLPGLVAAKV------------G------SNVTLTDDSNR--IEVLKNMRRVCEM-NKLNCRVMGLTWG 129 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~~------------g------a~V~~~D~~~~--~~~l~~~~~n~~~-n~~~~~~~~l~~~ 129 (169)
.-+|+|+||.+|--++.+... + .+|+..|+..+ -.+...+-.+.+. .....-+....-|
T Consensus 17 ~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvpg 96 (334)
T PF03492_consen 17 PFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVPG 96 (334)
T ss_dssp EEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEES
T ss_pred ceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecCc
Confidence 348999999999988876542 2 27999999865 0122222222111 0122223334456
Q ss_pred CCCcCCCC-CCCcEEEEcCcCCCCCChH
Q 030935 130 FLDASIFD-LNPNIILGADVFYDASGKI 156 (169)
Q Consensus 130 ~~~~~~~~-~~fDlIi~sd~iy~~~~~~ 156 (169)
.+...+++ .+.|+++++-.+||....+
T Consensus 97 SFy~rLfP~~Svh~~~Ss~alHWLS~vP 124 (334)
T PF03492_consen 97 SFYGRLFPSNSVHFGHSSYALHWLSQVP 124 (334)
T ss_dssp -TTS--S-TT-EEEEEEES-TTB-SSS-
T ss_pred hhhhccCCCCceEEEEEechhhhcccCC
Confidence 66555544 5899999999999887654
No 295
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=90.34 E-value=1.7 Score=35.38 Aligned_cols=66 Identities=6% Similarity=-0.092 Sum_probs=49.9
Q ss_pred HHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhC---CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEE
Q 030935 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVM 124 (169)
Q Consensus 57 ~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g---a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~ 124 (169)
+|.+-+.......++...+|.--|.|.-+..+.+.. .+++++|.+ +.+++.+++.+..++..+.+.
T Consensus 10 VLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD--~~Ai~~a~~~l~~~~~r~~~v 78 (314)
T COG0275 10 VLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRD--PQAIAIAKERLKEFDGRVTLV 78 (314)
T ss_pred hHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCC--HHHHHHHHHHhhccCCcEEEE
Confidence 344444455555567899999999999998887764 479999999 569999999888776555444
No 296
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.31 E-value=1.4 Score=35.75 Aligned_cols=78 Identities=17% Similarity=0.124 Sum_probs=50.5
Q ss_pred CCCCCCeEEEECCCCCH---HHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc------CCC-
Q 030935 67 YRFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA------SIF- 136 (169)
Q Consensus 67 ~~~~~~~vLElGcGtGl---~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~------~~~- 136 (169)
...+|+.||==|.|.|+ +++.+|++|++++..|+++. ..+...+.++.+| .+.....+..+.++ ...
T Consensus 34 k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~--~~~etv~~~~~~g-~~~~y~cdis~~eei~~~a~~Vk~ 110 (300)
T KOG1201|consen 34 KSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQ--GNEETVKEIRKIG-EAKAYTCDISDREEIYRLAKKVKK 110 (300)
T ss_pred hhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEecccc--chHHHHHHHHhcC-ceeEEEecCCCHHHHHHHHHHHHH
Confidence 34678899999999995 56777889999999999974 5555555555554 33333333333222 011
Q ss_pred -CCCCcEEEEcC
Q 030935 137 -DLNPNIILGAD 147 (169)
Q Consensus 137 -~~~fDlIi~sd 147 (169)
-...|+++.+-
T Consensus 111 e~G~V~ILVNNA 122 (300)
T KOG1201|consen 111 EVGDVDILVNNA 122 (300)
T ss_pred hcCCceEEEecc
Confidence 13788888655
No 297
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=89.94 E-value=0.99 Score=37.14 Aligned_cols=76 Identities=13% Similarity=0.135 Sum_probs=48.0
Q ss_pred EEECCCCCHH-HHHHHH-hCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCC-------CcCCCCCCCcEEEE
Q 030935 75 VELGAGTSLP-GLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFL-------DASIFDLNPNIILG 145 (169)
Q Consensus 75 LElGcGtGl~-~l~~a~-~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~-------~~~~~~~~fDlIi~ 145 (169)
+|+|.|+-.+ .+.-+. .+...++||+++. .++.++.|+..|++.-.+....-... .....+..||+..|
T Consensus 107 iDIgtgasci~~llg~rq~n~~f~~teidd~--s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMc 184 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGARQNNWYFLATEIDDM--SFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMC 184 (419)
T ss_pred eeccCchhhhHHhhhchhccceeeeeecccc--ccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEec
Confidence 6887775433 222233 3447999999975 89999999999998643332222111 01112336999999
Q ss_pred cCcCCCC
Q 030935 146 ADVFYDA 152 (169)
Q Consensus 146 sd~iy~~ 152 (169)
+.++|..
T Consensus 185 NPPFfe~ 191 (419)
T KOG2912|consen 185 NPPFFEN 191 (419)
T ss_pred CCchhhc
Confidence 9998855
No 298
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=89.01 E-value=2.5 Score=36.88 Aligned_cols=93 Identities=19% Similarity=0.220 Sum_probs=53.8
Q ss_pred CCCCeEEEECCC-CCHHHHHHHH-hCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCC-----------CCcC-
Q 030935 69 FSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGF-----------LDAS- 134 (169)
Q Consensus 69 ~~~~~vLElGcG-tGl~~l~~a~-~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~-----------~~~~- 134 (169)
.++.+|+=+||| .|+..+.+++ +|++|++.|.++ +-++.++. .+.. +..++..+ ....
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~--~rle~a~~----lGa~--~v~v~~~e~g~~~~gYa~~~s~~~ 233 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP--EVKEQVQS----MGAE--FLELDFKEEGGSGDGYAKVMSEEF 233 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHH----cCCe--EEeccccccccccccceeecCHHH
Confidence 356799999998 6677665555 688999999984 35554443 2222 11122100 0000
Q ss_pred -------CC--CCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 135 -------IF--DLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 135 -------~~--~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.. -..+|+||.+-.+--.....-+.+...+.+|||
T Consensus 234 ~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpG 277 (511)
T TIGR00561 234 IAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAG 277 (511)
T ss_pred HHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCC
Confidence 00 136899998776644333333666667777775
No 299
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=88.64 E-value=1.6 Score=30.86 Aligned_cols=78 Identities=15% Similarity=0.205 Sum_probs=43.9
Q ss_pred CCCCCCeEEEECCCC-C-HHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEE
Q 030935 67 YRFSGANVVELGAGT-S-LPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNII 143 (169)
Q Consensus 67 ~~~~~~~vLElGcGt-G-l~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlI 143 (169)
..++++++|=+|+|- | .+...++..|+ +|+.+..+. +-.+...+.+ ....+....|.+.... -.++|+|
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~--~ra~~l~~~~----~~~~~~~~~~~~~~~~--~~~~Div 79 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP--ERAEALAEEF----GGVNIEAIPLEDLEEA--LQEADIV 79 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH--HHHHHHHHHH----TGCSEEEEEGGGHCHH--HHTESEE
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH--HHHHHHHHHc----CccccceeeHHHHHHH--HhhCCeE
Confidence 356899999999982 2 33334555687 599998873 2333322222 1122344566654311 2378999
Q ss_pred EEcCcCCCC
Q 030935 144 LGADVFYDA 152 (169)
Q Consensus 144 i~sd~iy~~ 152 (169)
|.+-..=..
T Consensus 80 I~aT~~~~~ 88 (135)
T PF01488_consen 80 INATPSGMP 88 (135)
T ss_dssp EE-SSTTST
T ss_pred EEecCCCCc
Confidence 987655433
No 300
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=88.17 E-value=0.21 Score=40.71 Aligned_cols=62 Identities=11% Similarity=-0.022 Sum_probs=41.0
Q ss_pred HHHhccCCCCCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEE
Q 030935 61 YVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVM 124 (169)
Q Consensus 61 ~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~ 124 (169)
-+.+.....++...+|.--|.|.-+..+++. +.+|++.|.+ +++++.++++++.......+.
T Consensus 11 Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD--~~a~~~a~~~l~~~~~r~~~~ 74 (310)
T PF01795_consen 11 EVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRD--PEALERAKERLKKFDDRFIFI 74 (310)
T ss_dssp HHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES---HHHHHHHHCCTCCCCTTEEEE
T ss_pred HHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCC--HHHHHHHHHHHhhccceEEEE
Confidence 3333334456779999999999999988864 3599999999 679999988776544333333
No 301
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.08 E-value=4.5 Score=34.63 Aligned_cols=75 Identities=19% Similarity=0.303 Sum_probs=43.4
Q ss_pred CCCCCCeEEEECCC-CCHHH-HHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEE
Q 030935 67 YRFSGANVVELGAG-TSLPG-LVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIIL 144 (169)
Q Consensus 67 ~~~~~~~vLElGcG-tGl~~-l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi 144 (169)
...++++|+=+|+| +|+-. ..++++|.+|+++|..+. .......+.++..++.+. .+.... ....+|+||
T Consensus 12 ~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~-~~~~~~~~~l~~~gv~~~-----~~~~~~--~~~~~D~Vv 83 (480)
T PRK01438 12 SDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD-ERHRALAAILEALGATVR-----LGPGPT--LPEDTDLVV 83 (480)
T ss_pred cCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch-hhhHHHHHHHHHcCCEEE-----ECCCcc--ccCCCCEEE
Confidence 34567899999987 44432 244456889999997752 334444444555565432 111111 223679888
Q ss_pred EcCcC
Q 030935 145 GADVF 149 (169)
Q Consensus 145 ~sd~i 149 (169)
.+--+
T Consensus 84 ~s~Gi 88 (480)
T PRK01438 84 TSPGW 88 (480)
T ss_pred ECCCc
Confidence 76544
No 302
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=87.77 E-value=5.6 Score=30.57 Aligned_cols=94 Identities=16% Similarity=0.098 Sum_probs=45.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHh----C--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc-----CCC--
Q 030935 70 SGANVVELGAGTSLPGLVAAKV----G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-----SIF-- 136 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~----g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~-----~~~-- 136 (169)
+.+.|+|+|.-.|.-.++.|.+ | .+|+++|++-+ ...+..++.+.+..++. +..|+... ...
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir----~~~~~a~e~hp~~~rI~-~i~Gds~d~~~~~~v~~~ 106 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIR----PHNRKAIESHPMSPRIT-FIQGDSIDPEIVDQVREL 106 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GT----T--S-GGGG----TTEE-EEES-SSSTHHHHTSGSS
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcc----hhchHHHhhccccCceE-EEECCCCCHHHHHHHHHh
Confidence 4579999999999988877652 2 48999999632 11122233333322222 33343221 111
Q ss_pred --CCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 137 --DLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 137 --~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.....+| .-|.=|.....-..++.....++||
T Consensus 107 ~~~~~~vlV-ilDs~H~~~hvl~eL~~y~plv~~G 140 (206)
T PF04989_consen 107 ASPPHPVLV-ILDSSHTHEHVLAELEAYAPLVSPG 140 (206)
T ss_dssp ----SSEEE-EESS----SSHHHHHHHHHHT--TT
T ss_pred hccCCceEE-EECCCccHHHHHHHHHHhCccCCCC
Confidence 1233444 4688888888888888888888876
No 303
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=87.52 E-value=3.7 Score=32.50 Aligned_cols=61 Identities=20% Similarity=0.261 Sum_probs=48.6
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhC
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNK 118 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~ 118 (169)
.+.|...+... ....+..|||--+|+|..++++.+.|-+.++.+++ ++.++.+.+.+....
T Consensus 208 P~~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~--~~y~~~~~~r~~~~~ 268 (302)
T COG0863 208 PLALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEIN--PEYVEVALKRLQEGL 268 (302)
T ss_pred hHHHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHcCCceEEEecC--HHHHHHHHHHHHhhc
Confidence 44555555544 45578899999999999999999999999999999 568888887776543
No 304
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=87.09 E-value=1.5 Score=37.22 Aligned_cols=50 Identities=14% Similarity=0.084 Sum_probs=33.9
Q ss_pred CcceeecchHHHHHHHHHhc-cCCCCCCeEEEECCC-CCHHHHHHHH-hCCeEEEEcCCC
Q 030935 46 EYGLFVWPCSVILAEYVWQQ-RYRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSN 102 (169)
Q Consensus 46 ~~g~~~W~~~~~La~~l~~~-~~~~~~~~vLElGcG-tGl~~l~~a~-~ga~V~~~D~~~ 102 (169)
++|..+|.+ +.+. ...+.|++|+=+|+| .|......++ .|++|+++|.++
T Consensus 183 g~g~s~~~~-------i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 183 GCRESLIDG-------IKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred hhchhhHHH-------HHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 456666654 3333 234689999999999 4554444444 588999999985
No 305
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=86.56 E-value=2.6 Score=34.95 Aligned_cols=44 Identities=30% Similarity=0.306 Sum_probs=31.8
Q ss_pred CCCCCCeEEEECCCC-CHHHHHHHH-hCC-eEEEEcCCCcHHHHHHHHH
Q 030935 67 YRFSGANVVELGAGT-SLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRR 112 (169)
Q Consensus 67 ~~~~~~~vLElGcGt-Gl~~l~~a~-~ga-~V~~~D~~~~~~~l~~~~~ 112 (169)
...++.+||.+|||. |...+.+|+ .|. +|++++.++ +.++.+++
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~--~~~~~~~~ 227 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVP--ERLEMARS 227 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCH--HHHHHHHH
Confidence 345788999999875 666666666 466 599999984 46666665
No 306
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=86.27 E-value=8.9 Score=30.76 Aligned_cols=44 Identities=16% Similarity=0.320 Sum_probs=27.2
Q ss_pred HHHHHHhccCCCCCCeEEEECCCCCHH-HH--HHHHhCC-eEEEEcCCC
Q 030935 58 LAEYVWQQRYRFSGANVVELGAGTSLP-GL--VAAKVGS-NVTLTDDSN 102 (169)
Q Consensus 58 La~~l~~~~~~~~~~~vLElGcGtGl~-~l--~~a~~ga-~V~~~D~~~ 102 (169)
+..-+.+.....+++++|=+|+| |.- ++ .+++.|+ +|+.++.+.
T Consensus 113 ~~~~l~~~~~~~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 113 FVRNLREHGVDVKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred HHHHHHhcCCCcCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 33344433334578899999997 432 22 2345677 599998874
No 307
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=86.25 E-value=4 Score=32.33 Aligned_cols=92 Identities=15% Similarity=0.196 Sum_probs=52.8
Q ss_pred CCCCeEEEECCC-CCHHHH-HHHHhCC-eEEEEcCCCcHHHH-------------------HHHHHHHHHhCCcceEEEE
Q 030935 69 FSGANVVELGAG-TSLPGL-VAAKVGS-NVTLTDDSNRIEVL-------------------KNMRRVCEMNKLNCRVMGL 126 (169)
Q Consensus 69 ~~~~~vLElGcG-tGl~~l-~~a~~ga-~V~~~D~~~~~~~l-------------------~~~~~n~~~n~~~~~~~~l 126 (169)
++...|+=+|+| .|-..+ +|++.|- +++.+|.+.- .+ +.+++.++.-+..|++..+
T Consensus 28 l~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v--~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~ 105 (263)
T COG1179 28 LKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDV--CVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAI 105 (263)
T ss_pred HhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccc--cccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeeh
Confidence 466789999988 666655 5666775 8999998752 12 2333334433445555433
Q ss_pred E--cCC-CCcCCCCCCCcEEEEcCcCCCCCChHHHHHHHHH
Q 030935 127 T--WGF-LDASIFDLNPNIILGADVFYDASGKICAFEILIC 164 (169)
Q Consensus 127 ~--~~~-~~~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~ 164 (169)
+ |.. ..+.+....||+|| |++=+...--+|+..+.+
T Consensus 106 ~~f~t~en~~~~~~~~~DyvI--DaiD~v~~Kv~Li~~c~~ 144 (263)
T COG1179 106 NDFITEENLEDLLSKGFDYVI--DAIDSVRAKVALIAYCRR 144 (263)
T ss_pred HhhhCHhHHHHHhcCCCCEEE--EchhhhHHHHHHHHHHHH
Confidence 2 111 11123345899999 566555555556655544
No 308
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=86.22 E-value=2.8 Score=34.52 Aligned_cols=42 Identities=36% Similarity=0.479 Sum_probs=32.1
Q ss_pred CCCCeEEEECCC-CCHHHHHHHH-hCC-eEEEEcCCCcHHHHHHHHH
Q 030935 69 FSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRR 112 (169)
Q Consensus 69 ~~~~~vLElGcG-tGl~~l~~a~-~ga-~V~~~D~~~~~~~l~~~~~ 112 (169)
.++.+|+=+||| .|++++.+++ .|+ +|+++|.++ +=++.|++
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~--~Rl~~A~~ 211 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP--ERLELAKE 211 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH--HHHHHHHH
Confidence 344489999999 7999887777 465 899999995 46666654
No 309
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=85.68 E-value=0.81 Score=35.30 Aligned_cols=43 Identities=9% Similarity=0.029 Sum_probs=32.3
Q ss_pred CeEEEECCCCCHHHHHHHHhCC--eEEEEcCCCcHHHHHHHHHHHHH
Q 030935 72 ANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEM 116 (169)
Q Consensus 72 ~~vLElGcGtGl~~l~~a~~ga--~V~~~D~~~~~~~l~~~~~n~~~ 116 (169)
-...|||||-|.+-+.++.+.. -+.+.++-.+ +-+..++.++.
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~K--VsdYVk~RI~A 106 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDK--VSDYVKERIQA 106 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHH--HHHHHHHHHHH
Confidence 3689999999999998888765 4888888643 66666666543
No 310
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=85.48 E-value=2.7 Score=28.66 Aligned_cols=55 Identities=11% Similarity=0.049 Sum_probs=27.4
Q ss_pred eEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEc
Q 030935 73 NVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (169)
Q Consensus 73 ~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~s 146 (169)
+|| +-||+|..+-.++ +..++.++.+|++..+................+|+|+.+
T Consensus 3 kIL-lvCg~G~STSlla------------------~k~k~~~~e~gi~~~i~a~~~~e~~~~~~~~~~DvIll~ 57 (104)
T PRK09590 3 KAL-IICAAGMSSSMMA------------------KKTTEYLKEQGKDIEVDAITATEGEKAIAAAEYDLYLVS 57 (104)
T ss_pred EEE-EECCCchHHHHHH------------------HHHHHHHHHCCCceEEEEecHHHHHHhhccCCCCEEEEC
Confidence 344 7788887554433 333444555666655443333322111122356777765
No 311
>PRK08328 hypothetical protein; Provisional
Probab=85.46 E-value=5.2 Score=31.06 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=24.8
Q ss_pred CCCCeEEEECCC-CC-HHHHHHHHhCC-eEEEEcCCC
Q 030935 69 FSGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDSN 102 (169)
Q Consensus 69 ~~~~~vLElGcG-tG-l~~l~~a~~ga-~V~~~D~~~ 102 (169)
+++.+|+=+||| .| .+...+++.|. +++.+|.+.
T Consensus 25 L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 25 LKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 366799999999 34 34556677786 799998653
No 312
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=84.35 E-value=5.6 Score=33.19 Aligned_cols=91 Identities=15% Similarity=0.116 Sum_probs=48.1
Q ss_pred CCCCeEEEECCC-CCHHHH-HHHHhCC-eEEEEcCCCcHHH------------------HHHHHHHHHHhCCcceEEEEE
Q 030935 69 FSGANVVELGAG-TSLPGL-VAAKVGS-NVTLTDDSNRIEV------------------LKNMRRVCEMNKLNCRVMGLT 127 (169)
Q Consensus 69 ~~~~~vLElGcG-tGl~~l-~~a~~ga-~V~~~D~~~~~~~------------------l~~~~~n~~~n~~~~~~~~l~ 127 (169)
+++..||=+||| -|.+++ +++..|. ++=.+|.+.. ++ .+.|+.++...+-.+.+..+.
T Consensus 64 Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvV-e~sNlhRQVlh~ea~vg~~Ka~sA~~~lr~lNs~v~v~~y~ 142 (427)
T KOG2017|consen 64 LKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVV-ELSNLHRQVLHTEARVGMHKAESAAAFLRRLNSHVEVQTYN 142 (427)
T ss_pred cCCccEEEEccCCCCCHHHHHHHHcCCCeeccccccee-ehhhHHHHHhhhhhhhhhHHHHHHHHHHHhcCCCceeeech
Confidence 355689999998 677765 5666665 6666666531 00 122333333334344443332
Q ss_pred cCCCCcCCCC--CCCcEEE-EcCcCCCCCChHHHHH
Q 030935 128 WGFLDASIFD--LNPNIIL-GADVFYDASGKICAFE 160 (169)
Q Consensus 128 ~~~~~~~~~~--~~fDlIi-~sd~iy~~~~~~~l~~ 160 (169)
-.-.....+. ..||+|+ |+|-++....+.+..-
T Consensus 143 ~~L~~sNa~~Ii~~YdvVlDCTDN~~TRYLisD~CV 178 (427)
T KOG2017|consen 143 EFLSSSNAFDIIKQYDVVLDCTDNVPTRYLISDVCV 178 (427)
T ss_pred hhccchhHHHHhhccceEEEcCCCccchhhhhhHHH
Confidence 1111111111 3899998 7777765555444433
No 313
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=84.33 E-value=0.62 Score=40.21 Aligned_cols=91 Identities=20% Similarity=0.128 Sum_probs=58.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHh--CC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEE--cCCC--CcCCCCCCCcE
Q 030935 70 SGANVVELGAGTSLPGLVAAKV--GS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLT--WGFL--DASIFDLNPNI 142 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~--ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~--~~~~--~~~~~~~~fDl 142 (169)
++.+|||-=|+||+=++-.|+. |. +|++.|.++ ..++.+++|++.|+....+.... .... ........||+
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~--~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDv 186 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNE--NAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDV 186 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCH--HHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccce
Confidence 4568999999999999987774 33 799999995 59999999999997653332111 1110 01112358888
Q ss_pred EEEcCcCCCC-CChHHHHHHHH
Q 030935 143 ILGADVFYDA-SGKICAFEILI 163 (169)
Q Consensus 143 Ii~sd~iy~~-~~~~~l~~~l~ 163 (169)
|=. |++=.+ ..+++.++.+.
T Consensus 187 IDL-DPyGs~s~FLDsAvqav~ 207 (525)
T KOG1253|consen 187 IDL-DPYGSPSPFLDSAVQAVR 207 (525)
T ss_pred Eec-CCCCCccHHHHHHHHHhh
Confidence 853 443322 22566666554
No 314
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=84.29 E-value=6.1 Score=29.22 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=32.6
Q ss_pred HHHHHHhccCCCCCCeEEEECCC--CCH-HHHHHHHhCCeEEEEcCCC
Q 030935 58 LAEYVWQQRYRFSGANVVELGAG--TSL-PGLVAAKVGSNVTLTDDSN 102 (169)
Q Consensus 58 La~~l~~~~~~~~~~~vLElGcG--tGl-~~l~~a~~ga~V~~~D~~~ 102 (169)
..+++.+....+++++||=+|+| .|. +...+.+.|++|+.++...
T Consensus 31 ~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~ 78 (168)
T cd01080 31 ILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT 78 (168)
T ss_pred HHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc
Confidence 33444444456789999999999 376 5556667888999988773
No 315
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=83.94 E-value=8.7 Score=28.34 Aligned_cols=102 Identities=12% Similarity=0.032 Sum_probs=60.6
Q ss_pred hHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHH-HHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCC
Q 030935 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVA-AKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLD 132 (169)
Q Consensus 54 ~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~-a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~ 132 (169)
.+..|++.+.+... .+.+|+=|||=+-...+.- ...+.++.+.|++.+ .+..+.+ .+...+.....
T Consensus 11 T~~~l~~~l~~~~~--~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~R----------F~~~~~~-~F~fyD~~~p~ 77 (162)
T PF10237_consen 11 TAEFLARELLDGAL--DDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRR----------FEQFGGD-EFVFYDYNEPE 77 (162)
T ss_pred HHHHHHHHHHHhcC--CCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecch----------HHhcCCc-ceEECCCCChh
Confidence 45667777766432 4578999998766555544 123448999999964 3333322 23334444322
Q ss_pred cC--CCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccC
Q 030935 133 AS--IFDLNPNIILGADVFYDASGKICAFEILICSLFP 168 (169)
Q Consensus 133 ~~--~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p 168 (169)
.. ....+||+||+-.++...+......+++..+++|
T Consensus 78 ~~~~~l~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~ 115 (162)
T PF10237_consen 78 ELPEELKGKFDVVVIDPPFLSEECLTKTAETIRLLLKP 115 (162)
T ss_pred hhhhhcCCCceEEEECCCCCCHHHHHHHHHHHHHHhCc
Confidence 11 1245999999844444445556667777777665
No 316
>PRK08862 short chain dehydrogenase; Provisional
Probab=83.65 E-value=8.1 Score=29.55 Aligned_cols=77 Identities=18% Similarity=0.261 Sum_probs=45.6
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CC-------C
Q 030935 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SI-------F 136 (169)
Q Consensus 69 ~~~~~vLElGcGtGl---~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~-------~ 136 (169)
++++++|=.|++.|+ ++..+++.|++|++++.++ +.++.+.+.++..+........+-.+... .. .
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~--~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQ--SALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQF 80 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCH--HHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHh
Confidence 467899999999886 3345566789999998874 45655555454444333333333222211 00 1
Q ss_pred CCCCcEEEEcC
Q 030935 137 DLNPNIILGAD 147 (169)
Q Consensus 137 ~~~fDlIi~sd 147 (169)
..++|+++.+-
T Consensus 81 g~~iD~li~na 91 (227)
T PRK08862 81 NRAPDVLVNNW 91 (227)
T ss_pred CCCCCEEEECC
Confidence 12789988765
No 317
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=83.17 E-value=6 Score=29.98 Aligned_cols=33 Identities=27% Similarity=0.467 Sum_probs=25.2
Q ss_pred CCCCeEEEECCC-CC-HHHHHHHHhCC-eEEEEcCC
Q 030935 69 FSGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDS 101 (169)
Q Consensus 69 ~~~~~vLElGcG-tG-l~~l~~a~~ga-~V~~~D~~ 101 (169)
+++++||=+||| .| .+...+++.|. +++.+|.+
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 467899999998 33 44556677786 89999987
No 318
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=83.04 E-value=10 Score=29.00 Aligned_cols=79 Identities=15% Similarity=0.154 Sum_probs=45.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHH----hCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCC------
Q 030935 69 FSGANVVELGAGTSLPGLVAAK----VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------ 136 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~----~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~------ 136 (169)
++++++|=.|+ +|.+|..+++ .|++|++++.++ +.++.+...++..+.++.....+..+... ...
T Consensus 8 ~~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (255)
T PRK07523 8 LTGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDP--AKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAE 84 (255)
T ss_pred CCCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCH--HHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence 57889999995 5666665544 588999999884 34554545554444334333344433211 000
Q ss_pred CCCCcEEEEcCcCC
Q 030935 137 DLNPNIILGADVFY 150 (169)
Q Consensus 137 ~~~fDlIi~sd~iy 150 (169)
-.+.|+||.+--..
T Consensus 85 ~~~~d~li~~ag~~ 98 (255)
T PRK07523 85 IGPIDILVNNAGMQ 98 (255)
T ss_pred cCCCCEEEECCCCC
Confidence 12679988776544
No 319
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=82.52 E-value=3 Score=35.16 Aligned_cols=100 Identities=10% Similarity=0.003 Sum_probs=55.0
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCC--eEEEEcCCCcHHHHH--HHHHHH---HHhCCcceEEEEEcCCCCcCC----C
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLK--NMRRVC---EMNKLNCRVMGLTWGFLDASI----F 136 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~ga--~V~~~D~~~~~~~l~--~~~~n~---~~n~~~~~~~~l~~~~~~~~~----~ 136 (169)
..++....|||+|.|-+-.++|..++ .-+++++...+.-+. +.+.+. +..|.........-+++..+- .
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI 269 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEI 269 (419)
T ss_pred cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHHH
Confidence 44666889999999977776665443 566777665432222 222221 222333333334444432211 1
Q ss_pred CCCCcEEEEcCcCCCCCChHHHHHHHHHhccC
Q 030935 137 DLNPNIILGADVFYDASGKICAFEILICSLFP 168 (169)
Q Consensus 137 ~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p 168 (169)
....++|+.+.+-|+++..-.+- .+.+.+++
T Consensus 270 ~~eatvi~vNN~~Fdp~L~lr~~-eil~~ck~ 300 (419)
T KOG3924|consen 270 QTEATVIFVNNVAFDPELKLRSK-EILQKCKD 300 (419)
T ss_pred hhcceEEEEecccCCHHHHHhhH-HHHhhCCC
Confidence 23679999999999886654444 33333333
No 320
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=81.76 E-value=7 Score=31.69 Aligned_cols=43 Identities=26% Similarity=0.285 Sum_probs=27.4
Q ss_pred CCCCCCeEEEECCC-CCHHHHHHHH-hCC-eEEEEcCCCcHHHHHHHH
Q 030935 67 YRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 67 ~~~~~~~vLElGcG-tGl~~l~~a~-~ga-~V~~~D~~~~~~~l~~~~ 111 (169)
...++.+||=.||| .|+.++.+++ +|+ +|+++|.++ +-++.++
T Consensus 166 ~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~--~~~~~a~ 211 (343)
T PRK09880 166 GDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSP--RSLSLAR 211 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCH--HHHHHHH
Confidence 34468889888875 3344444444 477 699999884 3555554
No 321
>PRK05867 short chain dehydrogenase; Provisional
Probab=81.74 E-value=11 Score=28.83 Aligned_cols=80 Identities=13% Similarity=0.096 Sum_probs=45.6
Q ss_pred CCCCeEEEECCCCCHHH---HHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCC------C
Q 030935 69 FSGANVVELGAGTSLPG---LVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------D 137 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~---l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~------~ 137 (169)
++++++|=.|++.|+-. ..+++.|++|++++.+. +-++.....++..+........+..+... ... -
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHL--DALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAEL 84 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCH--HHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 46889999998766432 23345688999999874 45555555554444333333344333211 000 1
Q ss_pred CCCcEEEEcCcCC
Q 030935 138 LNPNIILGADVFY 150 (169)
Q Consensus 138 ~~fDlIi~sd~iy 150 (169)
.++|+++.+--+.
T Consensus 85 g~id~lv~~ag~~ 97 (253)
T PRK05867 85 GGIDIAVCNAGII 97 (253)
T ss_pred CCCCEEEECCCCC
Confidence 3789998765443
No 322
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=81.49 E-value=8.5 Score=30.02 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=25.1
Q ss_pred CCCCeEEEECCC-CC-HHHHHHHHhCC-eEEEEcCCC
Q 030935 69 FSGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDSN 102 (169)
Q Consensus 69 ~~~~~vLElGcG-tG-l~~l~~a~~ga-~V~~~D~~~ 102 (169)
+++.+||=+||| .| .+...+++.|. +++.+|.+.
T Consensus 9 L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 9 LRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred HhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 356789999998 44 44556677776 899999774
No 323
>PRK10458 DNA cytosine methylase; Provisional
Probab=81.41 E-value=3.8 Score=35.38 Aligned_cols=42 Identities=12% Similarity=0.073 Sum_probs=33.6
Q ss_pred CCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHH
Q 030935 71 GANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVC 114 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~ 114 (169)
.-+++||-||.|.+++.+-..|. .|.++|+++ .+.+.-+.|.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~--~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNK--HAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechH--HHHHHHHHHc
Confidence 34899999999999999988888 478899984 4666666664
No 324
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=81.19 E-value=6.9 Score=32.14 Aligned_cols=42 Identities=26% Similarity=0.321 Sum_probs=26.1
Q ss_pred CCCCCCeEEEECCC-CCHHHHHHHH-hCC-eEEEEcCCCcHHHHHHH
Q 030935 67 YRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNM 110 (169)
Q Consensus 67 ~~~~~~~vLElGcG-tGl~~l~~a~-~ga-~V~~~D~~~~~~~l~~~ 110 (169)
...++.+||=.|+| .|...+.+|+ +|+ +|+++|.++ +-++.+
T Consensus 188 ~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~--~r~~~a 232 (371)
T cd08281 188 GVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNE--DKLALA 232 (371)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCH--HHHHHH
Confidence 34567888888875 3333344444 577 699999884 344444
No 325
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=81.09 E-value=7.6 Score=31.58 Aligned_cols=43 Identities=30% Similarity=0.279 Sum_probs=28.0
Q ss_pred CCCCCCeEEEECCC-CCHHHHHHHH-hCCeEEEEcCCCcHHHHHHHH
Q 030935 67 YRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 67 ~~~~~~~vLElGcG-tGl~~l~~a~-~ga~V~~~D~~~~~~~l~~~~ 111 (169)
...++.+||=+||| .|...+.+|+ .|++|++++.++ +-++.++
T Consensus 163 ~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~--~~~~~~~ 207 (349)
T TIGR03201 163 GLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDP--EKLEMMK 207 (349)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCH--HHHHHHH
Confidence 44568899999984 2444444444 577999999884 3444443
No 326
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=80.80 E-value=8 Score=30.41 Aligned_cols=35 Identities=34% Similarity=0.490 Sum_probs=22.8
Q ss_pred CCCCCeEEEECCC-CCHHHHHHHH-hCCe-EEEEcCCC
Q 030935 68 RFSGANVVELGAG-TSLPGLVAAK-VGSN-VTLTDDSN 102 (169)
Q Consensus 68 ~~~~~~vLElGcG-tGl~~l~~a~-~ga~-V~~~D~~~ 102 (169)
..++.+||=.|+| .|+..+.+|+ +|++ |+++|.++
T Consensus 118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~ 155 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSP 155 (280)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 3478889888875 3333344444 4775 99998774
No 327
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=80.69 E-value=6.8 Score=31.87 Aligned_cols=41 Identities=15% Similarity=0.069 Sum_probs=26.3
Q ss_pred CCCCeEEEECCC-CCHHHHHHHH--hC-CeEEEEcCCCcHHHHHHHH
Q 030935 69 FSGANVVELGAG-TSLPGLVAAK--VG-SNVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 69 ~~~~~vLElGcG-tGl~~l~~a~--~g-a~V~~~D~~~~~~~l~~~~ 111 (169)
.+|.+||=+||| .|+..+.+++ .| ++|+++|.++ +-++.++
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~--~k~~~a~ 206 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQ--EKLDLFS 206 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcH--hHHHHHh
Confidence 468899999976 4444444454 34 4899999884 3444444
No 328
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=80.61 E-value=12 Score=28.48 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=25.6
Q ss_pred CCCCeEEEECCC-CC-HHHHHHHHhCC-eEEEEcCC
Q 030935 69 FSGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDS 101 (169)
Q Consensus 69 ~~~~~vLElGcG-tG-l~~l~~a~~ga-~V~~~D~~ 101 (169)
++.++|+=+||| .| .++..+++.|. +++.+|.+
T Consensus 19 L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 19 LEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 467799999998 33 45567777887 79999998
No 329
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=80.54 E-value=2.2 Score=34.76 Aligned_cols=98 Identities=15% Similarity=0.088 Sum_probs=62.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCC--eEEEEcCCCcHHHHHHHHHHHHHh--CCcceEEEEEcCC---CCcCCCCCCCcE
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMN--KLNCRVMGLTWGF---LDASIFDLNPNI 142 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga--~V~~~D~~~~~~~l~~~~~n~~~n--~~~~~~~~l~~~~---~~~~~~~~~fDl 142 (169)
..++||=+|-|-|-+-...++.-. ++..+|++++ +++..+.-...- +....-..+.-|+ +.+.....+||+
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~--Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDEN--VIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhHH--HHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 446899999998877766666532 7999999853 777666554322 2221112233343 222334569999
Q ss_pred EE--EcCcCCCCC--ChHHHHHHHHHhccCC
Q 030935 143 IL--GADVFYDAS--GKICAFEILICSLFPI 169 (169)
Q Consensus 143 Ii--~sd~iy~~~--~~~~l~~~l~~~L~p~ 169 (169)
|| ++|++=... ...+.++.+.++|||+
T Consensus 199 ii~dssdpvgpa~~lf~~~~~~~v~~aLk~d 229 (337)
T KOG1562|consen 199 IITDSSDPVGPACALFQKPYFGLVLDALKGD 229 (337)
T ss_pred EEEecCCccchHHHHHHHHHHHHHHHhhCCC
Confidence 99 566664332 2467889999999985
No 330
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=80.45 E-value=12 Score=32.39 Aligned_cols=78 Identities=6% Similarity=-0.007 Sum_probs=49.5
Q ss_pred CCCeEEEECCCCCHHHHHHHH---hCC---eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc-C--CCCCCC
Q 030935 70 SGANVVELGAGTSLPGLVAAK---VGS---NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-S--IFDLNP 140 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~---~ga---~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~-~--~~~~~f 140 (169)
++..|.|.-||+|..-+...+ .|. .+++.+.. +.+...++.|...++.........+++... + ....+|
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~--~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~ 294 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEIN--HTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGF 294 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCc--hHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccC
Confidence 456899999999976654433 122 58888888 458999999988776543211222333222 1 123479
Q ss_pred cEEEEcCcC
Q 030935 141 NIILGADVF 149 (169)
Q Consensus 141 DlIi~sd~i 149 (169)
|+|+++++.
T Consensus 295 D~v~~NpPf 303 (501)
T TIGR00497 295 EVVVSNPPY 303 (501)
T ss_pred CEEeecCCc
Confidence 999987654
No 331
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=80.08 E-value=20 Score=28.57 Aligned_cols=79 Identities=19% Similarity=0.204 Sum_probs=49.5
Q ss_pred CceEEEEeccccCCcceeecch-HHHHHHHHH---hccCCCCCCeEEEECCCCCHHHHHHHH-hCC--eEEEEcCCCc--
Q 030935 33 PSFSIAIIENMKEEYGLFVWPC-SVILAEYVW---QQRYRFSGANVVELGAGTSLPGLVAAK-VGS--NVTLTDDSNR-- 103 (169)
Q Consensus 33 ~~~~i~i~~~~~~~~g~~~W~~-~~~La~~l~---~~~~~~~~~~vLElGcGtGl~~l~~a~-~ga--~V~~~D~~~~-- 103 (169)
.+.+|.+... .+..-+++|.. --.||.-+. .+....+|.+||=||+++|..=-..+- -|. -|.+++.++.
T Consensus 116 gEkRisv~~~-~~kvEyRVWnPfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsG 194 (317)
T KOG1596|consen 116 GEKRISVENE-DGKVEYRVWNPFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSG 194 (317)
T ss_pred CceEEEeecC-CCcEEEEEeChHHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccch
Confidence 4555666544 45788999986 223443333 345566899999999999964333333 344 6888988864
Q ss_pred HHHHHHHHH
Q 030935 104 IEVLKNMRR 112 (169)
Q Consensus 104 ~~~l~~~~~ 112 (169)
.+++..|++
T Consensus 195 RdL~nmAkk 203 (317)
T KOG1596|consen 195 RDLINMAKK 203 (317)
T ss_pred HHHHHHhhc
Confidence 235555543
No 332
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=80.05 E-value=3.5 Score=35.49 Aligned_cols=86 Identities=16% Similarity=0.108 Sum_probs=51.0
Q ss_pred CCCCCCeEEEECCCCCHHHHHH--HHhCC--eEEEEcCCCcHHHHHHHHHHHHH--hCCcceEEEEEcCCCCcCCCCC-C
Q 030935 67 YRFSGANVVELGAGTSLPGLVA--AKVGS--NVTLTDDSNRIEVLKNMRRVCEM--NKLNCRVMGLTWGFLDASIFDL-N 139 (169)
Q Consensus 67 ~~~~~~~vLElGcGtGl~~l~~--a~~ga--~V~~~D~~~~~~~l~~~~~n~~~--n~~~~~~~~l~~~~~~~~~~~~-~ 139 (169)
+.++...++++|+|.|--+-++ ...+. .++.+|-+ ..|+.+...+... +....-+..+..-+...+.... .
T Consensus 197 p~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs--~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~ 274 (491)
T KOG2539|consen 197 PKFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRS--RAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNG 274 (491)
T ss_pred cccChHHHHHHHhhcccchhhhhhhcccccceeEeeccc--hHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccc
Confidence 3445567888988866443333 33332 68999999 4588888777654 2222222222222222233333 5
Q ss_pred CcEEEEcCcCCCCCC
Q 030935 140 PNIILGADVFYDASG 154 (169)
Q Consensus 140 fDlIi~sd~iy~~~~ 154 (169)
||+|||+..++...+
T Consensus 275 yDlvi~ah~l~~~~s 289 (491)
T KOG2539|consen 275 YDLVICAHKLHELGS 289 (491)
T ss_pred eeeEEeeeeeeccCC
Confidence 999999999987644
No 333
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=80.02 E-value=14 Score=27.85 Aligned_cols=80 Identities=15% Similarity=0.085 Sum_probs=45.4
Q ss_pred CCCCeEEEECCCCCHHHHHHH----HhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCC------
Q 030935 69 FSGANVVELGAGTSLPGLVAA----KVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------ 136 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a----~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~------ 136 (169)
..+++||=.|+ +|.+|..++ +.|++|++++.+. .-+......+...+.+..+...++.+... ...
T Consensus 4 ~~~~~ilItGa-sg~iG~~l~~~l~~~g~~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (251)
T PRK12826 4 LEGRVALVTGA-ARGIGRAIAVRLAADGAEVIVVDICG--DDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVED 80 (251)
T ss_pred CCCCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 35678997886 566666544 4578999998874 34444444454444344444444443211 000
Q ss_pred CCCCcEEEEcCcCCC
Q 030935 137 DLNPNIILGADVFYD 151 (169)
Q Consensus 137 ~~~fDlIi~sd~iy~ 151 (169)
-.++|+|+.+--.+.
T Consensus 81 ~~~~d~vi~~ag~~~ 95 (251)
T PRK12826 81 FGRLDILVANAGIFP 95 (251)
T ss_pred hCCCCEEEECCCCCC
Confidence 126899887765544
No 334
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=79.95 E-value=11 Score=28.55 Aligned_cols=40 Identities=40% Similarity=0.479 Sum_probs=27.2
Q ss_pred CCCCeEEEECCCC-CHHHHHHHH-hCCeEEEEcCCCcHHHHHHH
Q 030935 69 FSGANVVELGAGT-SLPGLVAAK-VGSNVTLTDDSNRIEVLKNM 110 (169)
Q Consensus 69 ~~~~~vLElGcGt-Gl~~l~~a~-~ga~V~~~D~~~~~~~l~~~ 110 (169)
.++.+||-.|+|+ |...+.+++ .|.+|++++.++ +..+.+
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~--~~~~~~ 174 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSD--EKLELA 174 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCH--HHHHHH
Confidence 5788999999986 433333444 577999999884 344444
No 335
>PRK07411 hypothetical protein; Validated
Probab=79.92 E-value=7.3 Score=32.77 Aligned_cols=34 Identities=24% Similarity=0.266 Sum_probs=25.1
Q ss_pred CCCCeEEEECCC-CC-HHHHHHHHhCC-eEEEEcCCC
Q 030935 69 FSGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDSN 102 (169)
Q Consensus 69 ~~~~~vLElGcG-tG-l~~l~~a~~ga-~V~~~D~~~ 102 (169)
++..+||=+||| .| -++..++..|. +++.+|.+.
T Consensus 36 L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ 72 (390)
T PRK07411 36 LKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDV 72 (390)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 356799999999 34 34556677776 788888874
No 336
>PRK06949 short chain dehydrogenase; Provisional
Probab=79.83 E-value=19 Score=27.43 Aligned_cols=78 Identities=21% Similarity=0.182 Sum_probs=44.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHH----hCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CC------C
Q 030935 69 FSGANVVELGAGTSLPGLVAAK----VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SI------F 136 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~----~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~------~ 136 (169)
.++++||=.| |+|.+|..+++ .|++|++++.++ +-++.+...+...+....+...+..+... .. .
T Consensus 7 ~~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~--~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (258)
T PRK06949 7 LEGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRV--ERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETE 83 (258)
T ss_pred CCCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHh
Confidence 4678899999 55555555443 578999998874 45555544443333333444444433211 00 0
Q ss_pred CCCCcEEEEcCcC
Q 030935 137 DLNPNIILGADVF 149 (169)
Q Consensus 137 ~~~fDlIi~sd~i 149 (169)
..++|+|+.+--.
T Consensus 84 ~~~~d~li~~ag~ 96 (258)
T PRK06949 84 AGTIDILVNNSGV 96 (258)
T ss_pred cCCCCEEEECCCC
Confidence 1267888876554
No 337
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=79.82 E-value=15 Score=28.04 Aligned_cols=78 Identities=14% Similarity=0.138 Sum_probs=45.5
Q ss_pred CCCCeEEEECCCCCHHHHHH----HHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc------CCC--
Q 030935 69 FSGANVVELGAGTSLPGLVA----AKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA------SIF-- 136 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~----a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~------~~~-- 136 (169)
++++++|=.|++.|+ |..+ ++.|++|++++.++ +.++.+...++..+........+..+... ...
T Consensus 9 ~~~k~ilItGas~~I-G~~la~~l~~~G~~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (256)
T PRK06124 9 LAGQVALVTGSARGL-GFEIARALAGAGAHVLVNGRNA--ATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAE 85 (256)
T ss_pred CCCCEEEEECCCchH-HHHHHHHHHHcCCeEEEEeCCH--HHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHh
Confidence 578899999975554 4433 34588999999884 35555555555444444444445443211 000
Q ss_pred CCCCcEEEEcCcC
Q 030935 137 DLNPNIILGADVF 149 (169)
Q Consensus 137 ~~~fDlIi~sd~i 149 (169)
-.++|.||.+--.
T Consensus 86 ~~~id~vi~~ag~ 98 (256)
T PRK06124 86 HGRLDILVNNVGA 98 (256)
T ss_pred cCCCCEEEECCCC
Confidence 1367888866543
No 338
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=79.51 E-value=27 Score=27.09 Aligned_cols=60 Identities=20% Similarity=0.187 Sum_probs=39.9
Q ss_pred ceeecch--HHHHHHHHHh--ccCCCCCCeEEEECCCCCHHHHHHHH-hC-CeEEEEcCCCcHHHHHH
Q 030935 48 GLFVWPC--SVILAEYVWQ--QRYRFSGANVVELGAGTSLPGLVAAK-VG-SNVTLTDDSNRIEVLKN 109 (169)
Q Consensus 48 g~~~W~~--~~~La~~l~~--~~~~~~~~~vLElGcGtGl~~l~~a~-~g-a~V~~~D~~~~~~~l~~ 109 (169)
-.+.|.. |-+-|..+.- +.+..+|.+||=||+-+|..--..+- .| ..|.+++.+++ ++..
T Consensus 50 eYR~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R--~~re 115 (231)
T COG1889 50 EYREWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPR--PMRE 115 (231)
T ss_pred ceeeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecch--hHHH
Confidence 3788976 3334444432 23456789999999999966555544 34 37999999964 5443
No 339
>PRK09291 short chain dehydrogenase; Provisional
Probab=79.46 E-value=16 Score=27.90 Aligned_cols=75 Identities=19% Similarity=0.171 Sum_probs=43.3
Q ss_pred CCeEEEECCCCCHHHHHH----HHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCCCCCCcEEE
Q 030935 71 GANVVELGAGTSLPGLVA----AKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIFDLNPNIIL 144 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~----a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~~~~fDlIi 144 (169)
++++|=.|++.| +|..+ ++.|++|+++..++ .-.+..+......+..+.+...++.+... .....+.|+|+
T Consensus 2 ~~~vlVtGasg~-iG~~ia~~l~~~G~~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi 78 (257)
T PRK09291 2 SKTILITGAGSG-FGREVALRLARKGHNVIAGVQIA--PQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLL 78 (257)
T ss_pred CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEE
Confidence 357888887544 45444 34588999988873 34444444444444455556666665321 11223789988
Q ss_pred EcCc
Q 030935 145 GADV 148 (169)
Q Consensus 145 ~sd~ 148 (169)
.+--
T Consensus 79 ~~ag 82 (257)
T PRK09291 79 NNAG 82 (257)
T ss_pred ECCC
Confidence 7543
No 340
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=79.33 E-value=17 Score=27.89 Aligned_cols=78 Identities=18% Similarity=0.149 Sum_probs=45.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHH----hCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC------CC--
Q 030935 69 FSGANVVELGAGTSLPGLVAAK----VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS------IF-- 136 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~----~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~------~~-- 136 (169)
++++++|=.| |+|.+|..+++ .|++|++++.+. +-++..+..+...+....+...+..+.... ..
T Consensus 10 ~~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~--~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~ 86 (259)
T PRK08213 10 LSGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKA--EELEEAAAHLEALGIDALWIAADVADEADIERLAEETLER 86 (259)
T ss_pred cCCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCH--HHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4678999999 45666665554 588999999873 345555544544444433444444432110 00
Q ss_pred CCCCcEEEEcCcC
Q 030935 137 DLNPNIILGADVF 149 (169)
Q Consensus 137 ~~~fDlIi~sd~i 149 (169)
..++|.|+.+--.
T Consensus 87 ~~~id~vi~~ag~ 99 (259)
T PRK08213 87 FGHVDILVNNAGA 99 (259)
T ss_pred hCCCCEEEECCCC
Confidence 1367988866543
No 341
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=79.19 E-value=8.1 Score=27.33 Aligned_cols=41 Identities=17% Similarity=0.280 Sum_probs=25.8
Q ss_pred EECCCCC--HHHHHHH--Hh--CCeEEEEcCCCcHHHHHHHHHH--HHHhC
Q 030935 76 ELGAGTS--LPGLVAA--KV--GSNVTLTDDSNRIEVLKNMRRV--CEMNK 118 (169)
Q Consensus 76 ElGcGtG--l~~l~~a--~~--ga~V~~~D~~~~~~~l~~~~~n--~~~n~ 118 (169)
|+||+.| ......+ +. +.+|+++|-+ |..++.+++| +..|.
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~--p~~~~~l~~~~~~~l~~ 49 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPN--PSNFEKLKRNLNLALND 49 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE-----HHHHHHHHHH--HHHTT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECC--HHHHHHHhHHHHHHhcC
Confidence 7999999 4434332 23 3489999999 5699999999 77663
No 342
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=79.11 E-value=7.3 Score=31.52 Aligned_cols=37 Identities=16% Similarity=0.108 Sum_probs=24.6
Q ss_pred cCCCCCCeEEEECCC-CCHHHHHHHH-hCCeEEEEcCCC
Q 030935 66 RYRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSN 102 (169)
Q Consensus 66 ~~~~~~~~vLElGcG-tGl~~l~~a~-~ga~V~~~D~~~ 102 (169)
....+|.+||=.|+| .|...+.+|+ .|++|++++.++
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~ 199 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGA 199 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCCh
Confidence 344568899999974 3333333444 577999999884
No 343
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=78.83 E-value=15 Score=29.40 Aligned_cols=35 Identities=26% Similarity=0.447 Sum_probs=25.7
Q ss_pred CCCCCeEEEECCC-CC-HHHHHHHHhC-CeEEEEcCCC
Q 030935 68 RFSGANVVELGAG-TS-LPGLVAAKVG-SNVTLTDDSN 102 (169)
Q Consensus 68 ~~~~~~vLElGcG-tG-l~~l~~a~~g-a~V~~~D~~~ 102 (169)
.+++.+|+=+||| .| .++..+++.| .+++.+|.+.
T Consensus 27 kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 27 LFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred HhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 3467899999999 34 4455677778 4899998774
No 344
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=78.67 E-value=7.5 Score=31.97 Aligned_cols=36 Identities=19% Similarity=0.228 Sum_probs=24.4
Q ss_pred CCCCCCeEEEECCC-CCHHHHHHHH-hCC-eEEEEcCCC
Q 030935 67 YRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSN 102 (169)
Q Consensus 67 ~~~~~~~vLElGcG-tGl~~l~~a~-~ga-~V~~~D~~~ 102 (169)
...+|.+||=.||| .|+..+.+|+ .|+ +|+++|.++
T Consensus 182 ~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~ 220 (368)
T TIGR02818 182 KVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINP 220 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence 34568899888875 3444444454 577 799998874
No 345
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=78.51 E-value=8.6 Score=31.73 Aligned_cols=34 Identities=21% Similarity=0.335 Sum_probs=25.4
Q ss_pred CCCCeEEEECCC-CC-HHHHHHHHhCC-eEEEEcCCC
Q 030935 69 FSGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDSN 102 (169)
Q Consensus 69 ~~~~~vLElGcG-tG-l~~l~~a~~ga-~V~~~D~~~ 102 (169)
+++++||=+||| .| .++..+++.|. +++.+|.+.
T Consensus 22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 467899999998 33 34456677786 899999874
No 346
>PRK08223 hypothetical protein; Validated
Probab=78.14 E-value=19 Score=29.16 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=26.3
Q ss_pred CCCCeEEEECCC-CC-HHHHHHHHhCC-eEEEEcCCC
Q 030935 69 FSGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDSN 102 (169)
Q Consensus 69 ~~~~~vLElGcG-tG-l~~l~~a~~ga-~V~~~D~~~ 102 (169)
+++.+||=+||| .| -+...++..|. +++.+|.+.
T Consensus 25 L~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 25 LRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 467899999999 34 44667788886 899998874
No 347
>PLN02740 Alcohol dehydrogenase-like
Probab=77.73 E-value=7.6 Score=32.09 Aligned_cols=43 Identities=21% Similarity=0.232 Sum_probs=26.8
Q ss_pred cCCCCCCeEEEECCC-CCHHHHHHHH-hCC-eEEEEcCCCcHHHHHHH
Q 030935 66 RYRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNM 110 (169)
Q Consensus 66 ~~~~~~~~vLElGcG-tGl~~l~~a~-~ga-~V~~~D~~~~~~~l~~~ 110 (169)
....+|.+||=+||| .|+..+.+|+ +|+ +|+++|.++ +-++.+
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~--~r~~~a 239 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINP--EKFEKG 239 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCCh--HHHHHH
Confidence 345578899999874 3333343444 577 699999874 344444
No 348
>PRK05876 short chain dehydrogenase; Provisional
Probab=77.51 E-value=16 Score=28.63 Aligned_cols=79 Identities=13% Similarity=0.112 Sum_probs=43.5
Q ss_pred CCCCeEEEECCCCCHHHH---HHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCC------C
Q 030935 69 FSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------D 137 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l---~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~------~ 137 (169)
++++++|=.|+++|+-.- .+++.|++|++++.++ .-++.+...++..+..+.+...+..+... ... -
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~--~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 81 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDK--PGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLL 81 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 568889988887664322 3344688999999884 34444444444334333333344433211 000 1
Q ss_pred CCCcEEEEcCcC
Q 030935 138 LNPNIILGADVF 149 (169)
Q Consensus 138 ~~fDlIi~sd~i 149 (169)
.+.|++|.+--+
T Consensus 82 g~id~li~nAg~ 93 (275)
T PRK05876 82 GHVDVVFSNAGI 93 (275)
T ss_pred CCCCEEEECCCc
Confidence 267988865543
No 349
>PRK07877 hypothetical protein; Provisional
Probab=77.35 E-value=8.6 Score=35.13 Aligned_cols=34 Identities=15% Similarity=0.146 Sum_probs=26.2
Q ss_pred CCCCeEEEECCCCCH-HHHHHHHhC--CeEEEEcCCC
Q 030935 69 FSGANVVELGAGTSL-PGLVAAKVG--SNVTLTDDSN 102 (169)
Q Consensus 69 ~~~~~vLElGcGtGl-~~l~~a~~g--a~V~~~D~~~ 102 (169)
+++.+|+=+|||.|. ++..++..| .+++.+|.+.
T Consensus 105 L~~~~V~IvG~GlGs~~a~~LaraGvvG~l~lvD~D~ 141 (722)
T PRK07877 105 LGRLRIGVVGLSVGHAIAHTLAAEGLCGELRLADFDT 141 (722)
T ss_pred HhcCCEEEEEecHHHHHHHHHHHccCCCeEEEEcCCE
Confidence 367799999999774 455777777 3899998874
No 350
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=77.31 E-value=4.7 Score=36.06 Aligned_cols=49 Identities=18% Similarity=0.041 Sum_probs=35.9
Q ss_pred hHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCC
Q 030935 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSN 102 (169)
Q Consensus 54 ~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~ 102 (169)
++..|.+.=.+.....++..||||||..|.....+++. |.-|+++|+-+
T Consensus 28 saFKLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 28 SAFKLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred HHHHHHHHHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 45555544444434446778999999999999988874 34799999975
No 351
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=77.06 E-value=11 Score=30.23 Aligned_cols=35 Identities=31% Similarity=0.294 Sum_probs=23.6
Q ss_pred cCCCCCCeEEEECCCCCHHHHH---HHH-hCCe-EEEEcCCC
Q 030935 66 RYRFSGANVVELGAGTSLPGLV---AAK-VGSN-VTLTDDSN 102 (169)
Q Consensus 66 ~~~~~~~~vLElGcGtGl~~l~---~a~-~ga~-V~~~D~~~ 102 (169)
....+|.+||=+|+| .+|++ +++ .|++ |++++.++
T Consensus 159 ~~~~~g~~vlV~G~G--~vG~~~~~~ak~~G~~~vi~~~~~~ 198 (339)
T cd08239 159 VGVSGRDTVLVVGAG--PVGLGALMLARALGAEDVIGVDPSP 198 (339)
T ss_pred cCCCCCCEEEEECCC--HHHHHHHHHHHHcCCCEEEEECCCH
Confidence 344568888888764 45544 344 5777 99999874
No 352
>PRK07035 short chain dehydrogenase; Provisional
Probab=76.77 E-value=20 Score=27.33 Aligned_cols=78 Identities=12% Similarity=0.183 Sum_probs=43.9
Q ss_pred CCCCeEEEECCCCCHHHH---HHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC--CC------C
Q 030935 69 FSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS--IF------D 137 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l---~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~--~~------~ 137 (169)
+++++||=.|++.|+-.- .+++.|++|++++.++ +-++.+.+.+...+.+......+..+.... .. -
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKL--DGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERH 83 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 467889999988664432 3445688999999874 345544444443333333333444432210 00 1
Q ss_pred CCCcEEEEcCc
Q 030935 138 LNPNIILGADV 148 (169)
Q Consensus 138 ~~fDlIi~sd~ 148 (169)
.++|+++.+--
T Consensus 84 ~~id~li~~ag 94 (252)
T PRK07035 84 GRLDILVNNAA 94 (252)
T ss_pred CCCCEEEECCC
Confidence 26899885443
No 353
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=76.65 E-value=3.2 Score=34.14 Aligned_cols=89 Identities=22% Similarity=0.292 Sum_probs=51.7
Q ss_pred CeEEEECCCCCHHHHHHHH----hCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcC
Q 030935 72 ANVVELGAGTSLPGLVAAK----VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGAD 147 (169)
Q Consensus 72 ~~vLElGcGtGl~~l~~a~----~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd 147 (169)
.+|.=||-| .+|..+|+ .|++|+..|++. +=+++... ..+.++...--...++.+.. .+.|+||++=
T Consensus 169 ~kv~iiGGG--vvgtnaAkiA~glgA~Vtild~n~--~rl~~ldd---~f~~rv~~~~st~~~iee~v--~~aDlvIgaV 239 (371)
T COG0686 169 AKVVVLGGG--VVGTNAAKIAIGLGADVTILDLNI--DRLRQLDD---LFGGRVHTLYSTPSNIEEAV--KKADLVIGAV 239 (371)
T ss_pred ccEEEECCc--cccchHHHHHhccCCeeEEEecCH--HHHhhhhH---hhCceeEEEEcCHHHHHHHh--hhccEEEEEE
Confidence 355556554 55555555 578999999984 23433332 22333222211111111111 3789999987
Q ss_pred cCCCCCChHHHHHHHHHhccCC
Q 030935 148 VFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 148 ~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.|--...+.-..+.....|+||
T Consensus 240 LIpgakaPkLvt~e~vk~MkpG 261 (371)
T COG0686 240 LIPGAKAPKLVTREMVKQMKPG 261 (371)
T ss_pred EecCCCCceehhHHHHHhcCCC
Confidence 7776666777777878888886
No 354
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=76.58 E-value=7.7 Score=30.52 Aligned_cols=52 Identities=12% Similarity=0.204 Sum_probs=38.0
Q ss_pred HHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHH
Q 030935 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRR 112 (169)
Q Consensus 59 a~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~ 112 (169)
.+-+.++.....+.-|.|+|-|.|.++..+...|+ +..+++++.+ .+.-.+.
T Consensus 39 T~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~R--Fip~LQ~ 91 (326)
T KOG0821|consen 39 TDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTR--FIPGLQM 91 (326)
T ss_pred HHHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccc--cChHHHH
Confidence 33344455556677899999999999999988886 7888888854 5554444
No 355
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=76.53 E-value=14 Score=28.87 Aligned_cols=34 Identities=26% Similarity=0.342 Sum_probs=24.8
Q ss_pred CCCCeEEEECCC-CC-HHHHHHHHhCC-eEEEEcCCC
Q 030935 69 FSGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDSN 102 (169)
Q Consensus 69 ~~~~~vLElGcG-tG-l~~l~~a~~ga-~V~~~D~~~ 102 (169)
+++.+|+=+||| .| .+...+++.|. +++.+|.+.
T Consensus 22 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 22 LKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 356799999998 44 34556677776 788888774
No 356
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=76.52 E-value=12 Score=31.94 Aligned_cols=72 Identities=13% Similarity=0.089 Sum_probs=44.1
Q ss_pred CCCCCCeEEEECCC-CCHH--HHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEE
Q 030935 67 YRFSGANVVELGAG-TSLP--GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNII 143 (169)
Q Consensus 67 ~~~~~~~vLElGcG-tGl~--~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlI 143 (169)
+..++++|+=+|.| +|.. +..+.++|++|++.|..+.+ . .++ ++..++. +. .+..... . ..+|+|
T Consensus 3 ~~~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~-~---~~~-l~~~gi~--~~---~~~~~~~-~-~~~d~v 70 (461)
T PRK00421 3 ELRRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESA-V---TQR-LLELGAI--IF---IGHDAEN-I-KDADVV 70 (461)
T ss_pred CcCCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCCh-H---HHH-HHHCCCE--Ee---CCCCHHH-C-CCCCEE
Confidence 34567788888877 7765 34677789999999988642 2 222 3333432 22 1221111 1 268999
Q ss_pred EEcCcCC
Q 030935 144 LGADVFY 150 (169)
Q Consensus 144 i~sd~iy 150 (169)
+.|.-+.
T Consensus 71 v~spgi~ 77 (461)
T PRK00421 71 VYSSAIP 77 (461)
T ss_pred EECCCCC
Confidence 9988775
No 357
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=76.12 E-value=12 Score=31.01 Aligned_cols=34 Identities=32% Similarity=0.426 Sum_probs=24.4
Q ss_pred CCCCeEEEECCC-CC-HHHHHHHHhCC-eEEEEcCCC
Q 030935 69 FSGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDSN 102 (169)
Q Consensus 69 ~~~~~vLElGcG-tG-l~~l~~a~~ga-~V~~~D~~~ 102 (169)
+++.+||=+||| .| -+...++..|. +++.+|.+.
T Consensus 26 L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 26 LFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred HhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 467899999998 23 33456666776 788888774
No 358
>PRK06139 short chain dehydrogenase; Provisional
Probab=76.11 E-value=20 Score=29.17 Aligned_cols=79 Identities=19% Similarity=0.213 Sum_probs=47.7
Q ss_pred CCCCeEEEECCCCCHHH---HHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CC------CC
Q 030935 69 FSGANVVELGAGTSLPG---LVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SI------FD 137 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~---l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~------~~ 137 (169)
+++++||=.|++.|+-. ..+++.|++|++++.++ +-++.+.+.++..+.+..+...+..+... .. ..
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~--~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 82 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGARLVLAARDE--EALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFG 82 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhc
Confidence 46788998888655432 23445688999999884 46666666666555555455555544221 00 01
Q ss_pred CCCcEEEEcCcC
Q 030935 138 LNPNIILGADVF 149 (169)
Q Consensus 138 ~~fDlIi~sd~i 149 (169)
.++|++|.+--+
T Consensus 83 g~iD~lVnnAG~ 94 (330)
T PRK06139 83 GRIDVWVNNVGV 94 (330)
T ss_pred CCCCEEEECCCc
Confidence 368999866543
No 359
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=76.07 E-value=18 Score=27.64 Aligned_cols=33 Identities=30% Similarity=0.313 Sum_probs=25.2
Q ss_pred CCCCeEEEECCC-CC-HHHHHHHHhCC-eEEEEcCC
Q 030935 69 FSGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDS 101 (169)
Q Consensus 69 ~~~~~vLElGcG-tG-l~~l~~a~~ga-~V~~~D~~ 101 (169)
++..+|+=+||| .| .+...+++.|. +++.+|.+
T Consensus 26 L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 26 LKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 467799999998 34 44556677776 79999988
No 360
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=76.01 E-value=13 Score=31.37 Aligned_cols=50 Identities=8% Similarity=-0.085 Sum_probs=34.3
Q ss_pred eecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCc
Q 030935 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR 103 (169)
Q Consensus 50 ~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~ 103 (169)
.+|+.+.+.-+-|. ..++.+||=|.+|...+--++++.-++|+++|+|+.
T Consensus 19 ~~WEDp~vD~~aL~----i~~~d~vl~ItSaG~N~L~yL~~~P~~I~aVDlNp~ 68 (380)
T PF11899_consen 19 QCWEDPRVDMEALN----IGPDDRVLTITSAGCNALDYLLAGPKRIHAVDLNPA 68 (380)
T ss_pred cccCCcHHHHHHhC----CCCCCeEEEEccCCchHHHHHhcCCceEEEEeCCHH
Confidence 57998888777764 335678999977644332234444469999999964
No 361
>PRK06172 short chain dehydrogenase; Provisional
Probab=75.97 E-value=23 Score=27.01 Aligned_cols=79 Identities=10% Similarity=0.035 Sum_probs=44.0
Q ss_pred CCCCeEEEECCCCCHHHH---HHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCC------C
Q 030935 69 FSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------D 137 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l---~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~------~ 137 (169)
++++++|=.|++.|+-.- .+++.|++|++++.++ +-++.+.+.++..+........+..+... ... -
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 82 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDA--AGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAY 82 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH--HHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 467899999976554332 2344688999999884 34554444454444333333344433211 000 1
Q ss_pred CCCcEEEEcCcC
Q 030935 138 LNPNIILGADVF 149 (169)
Q Consensus 138 ~~fDlIi~sd~i 149 (169)
.++|+|+.+--+
T Consensus 83 g~id~li~~ag~ 94 (253)
T PRK06172 83 GRLDYAFNNAGI 94 (253)
T ss_pred CCCCEEEECCCC
Confidence 267999876543
No 362
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=75.63 E-value=10 Score=25.18 Aligned_cols=55 Identities=13% Similarity=0.227 Sum_probs=31.7
Q ss_pred CeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcC
Q 030935 72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGAD 147 (169)
Q Consensus 72 ~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd 147 (169)
++|| +-||+|..+-.+ +..+++-++.+++++.+........... ...+|+|+.+.
T Consensus 4 ~~IL-l~C~~G~sSS~l------------------~~k~~~~~~~~gi~~~v~a~~~~~~~~~--~~~~Dvill~p 58 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLL------------------VNKMNKAAEEYGVPVKIAAGSYGAAGEK--LDDADVVLLAP 58 (95)
T ss_pred cEEE-EECCCchhHHHH------------------HHHHHHHHHHCCCcEEEEEecHHHHHhh--cCCCCEEEECc
Confidence 4565 778888654433 3344555666777766655544433221 13678888763
No 363
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=75.49 E-value=9.3 Score=28.39 Aligned_cols=41 Identities=39% Similarity=0.411 Sum_probs=25.4
Q ss_pred EEEECCCCC--HHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHH
Q 030935 74 VVELGAGTS--LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM 116 (169)
Q Consensus 74 vLElGcGtG--l~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~ 116 (169)
|-=+|+|+= .++..++..|.+|++.|.+ ++.++.+++.++.
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~--~~~l~~~~~~i~~ 44 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRS--PEALERARKRIER 44 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SS--HHHHHHHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECC--hHHHHhhhhHHHH
Confidence 444677632 3344556678899999999 5577766665543
No 364
>PRK08339 short chain dehydrogenase; Provisional
Probab=75.45 E-value=27 Score=27.10 Aligned_cols=78 Identities=17% Similarity=0.160 Sum_probs=43.7
Q ss_pred CCCCeEEEECCCCCHHH---HHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHh-CCcceEEEEEcCCCCc--CCC-----C
Q 030935 69 FSGANVVELGAGTSLPG---LVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN-KLNCRVMGLTWGFLDA--SIF-----D 137 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~---l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n-~~~~~~~~l~~~~~~~--~~~-----~ 137 (169)
++++++|=.|++.|+-. ..+++.|++|++++.+. +-++.+.+.+... +..+.+...+..+... ... -
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~ 83 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNE--ENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNI 83 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhh
Confidence 47888999998876532 34455688999999874 3444444444322 3333344444443211 000 1
Q ss_pred CCCcEEEEcCc
Q 030935 138 LNPNIILGADV 148 (169)
Q Consensus 138 ~~fDlIi~sd~ 148 (169)
.++|+++.+--
T Consensus 84 g~iD~lv~nag 94 (263)
T PRK08339 84 GEPDIFFFSTG 94 (263)
T ss_pred CCCcEEEECCC
Confidence 36788886543
No 365
>PRK06720 hypothetical protein; Provisional
Probab=75.42 E-value=27 Score=25.61 Aligned_cols=80 Identities=15% Similarity=0.150 Sum_probs=44.6
Q ss_pred CCCCeEEEECCCCCHHH---HHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CC----C--C
Q 030935 69 FSGANVVELGAGTSLPG---LVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SI----F--D 137 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~---l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~----~--~ 137 (169)
++++.+|=.|++.|+-. ..+++.|++|+++|.++ +.++.+...+...+....+...+..+... .. . -
T Consensus 14 l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~ 91 (169)
T PRK06720 14 LAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQ--ESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAF 91 (169)
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 36788999998776533 23455688999999874 34444433343333333344444433211 00 0 1
Q ss_pred CCCcEEEEcCcCC
Q 030935 138 LNPNIILGADVFY 150 (169)
Q Consensus 138 ~~fDlIi~sd~iy 150 (169)
.+.|+++.+--++
T Consensus 92 G~iDilVnnAG~~ 104 (169)
T PRK06720 92 SRIDMLFQNAGLY 104 (169)
T ss_pred CCCCEEEECCCcC
Confidence 3679888765444
No 366
>PRK07814 short chain dehydrogenase; Provisional
Probab=75.00 E-value=27 Score=26.96 Aligned_cols=76 Identities=14% Similarity=0.150 Sum_probs=42.4
Q ss_pred CCCCeEEEECCCCCHHHHHH----HHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC--CC------
Q 030935 69 FSGANVVELGAGTSLPGLVA----AKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS--IF------ 136 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~----a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~--~~------ 136 (169)
++++++|=.|+ +|.+|..+ ++.|++|++++.++ +-++.+.+.++..+....+...+..+.... ..
T Consensus 8 ~~~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~--~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (263)
T PRK07814 8 LDDQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTE--SQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEA 84 (263)
T ss_pred CCCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 46788999996 55555544 34688999999874 345544444433333333333444332110 00
Q ss_pred CCCCcEEEEcC
Q 030935 137 DLNPNIILGAD 147 (169)
Q Consensus 137 ~~~fDlIi~sd 147 (169)
-.++|+|+.+-
T Consensus 85 ~~~id~vi~~A 95 (263)
T PRK07814 85 FGRLDIVVNNV 95 (263)
T ss_pred cCCCCEEEECC
Confidence 12689998654
No 367
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=74.69 E-value=11 Score=31.19 Aligned_cols=33 Identities=24% Similarity=0.412 Sum_probs=24.7
Q ss_pred CCCCeEEEECCC-CC-HHHHHHHHhCC-eEEEEcCC
Q 030935 69 FSGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDS 101 (169)
Q Consensus 69 ~~~~~vLElGcG-tG-l~~l~~a~~ga-~V~~~D~~ 101 (169)
++..+||=+||| .| -++..+++.|. +++.+|.+
T Consensus 22 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 22 LREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 366799999998 33 34456667777 89999987
No 368
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=74.68 E-value=6.9 Score=29.30 Aligned_cols=33 Identities=27% Similarity=0.407 Sum_probs=17.8
Q ss_pred EECCC-CCHH-HHHHHHhCCeEEEEcCCCcHHHHHHH
Q 030935 76 ELGAG-TSLP-GLVAAKVGSNVTLTDDSNRIEVLKNM 110 (169)
Q Consensus 76 ElGcG-tGl~-~l~~a~~ga~V~~~D~~~~~~~l~~~ 110 (169)
=+|.| .|++ +..+|+.|.+|+++|+++ +.++.+
T Consensus 5 ViGlGyvGl~~A~~lA~~G~~V~g~D~~~--~~v~~l 39 (185)
T PF03721_consen 5 VIGLGYVGLPLAAALAEKGHQVIGVDIDE--EKVEAL 39 (185)
T ss_dssp EE--STTHHHHHHHHHHTTSEEEEE-S-H--HHHHHH
T ss_pred EECCCcchHHHHHHHHhCCCEEEEEeCCh--HHHHHH
Confidence 34555 4433 345566789999999994 455443
No 369
>PRK05854 short chain dehydrogenase; Provisional
Probab=74.37 E-value=29 Score=27.85 Aligned_cols=80 Identities=15% Similarity=0.098 Sum_probs=44.6
Q ss_pred CCCCCeEEEECCCCCHHH---HHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHh--CCcceEEEEEcCCCCc------CC-
Q 030935 68 RFSGANVVELGAGTSLPG---LVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN--KLNCRVMGLTWGFLDA------SI- 135 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~---l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n--~~~~~~~~l~~~~~~~------~~- 135 (169)
.++++++|=.|++.|+-. ..+++.|++|+++..+. +-.+.+...+... +..+.+..++..+... ..
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~--~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~ 88 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNR--AKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLR 88 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHH
Confidence 357888998888766432 23345688999998874 3444444444332 2234444555544321 00
Q ss_pred -CCCCCcEEEEcCcC
Q 030935 136 -FDLNPNIILGADVF 149 (169)
Q Consensus 136 -~~~~fDlIi~sd~i 149 (169)
...+.|++|.+--+
T Consensus 89 ~~~~~iD~li~nAG~ 103 (313)
T PRK05854 89 AEGRPIHLLINNAGV 103 (313)
T ss_pred HhCCCccEEEECCcc
Confidence 11368998866533
No 370
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=74.32 E-value=7.8 Score=32.52 Aligned_cols=51 Identities=20% Similarity=0.220 Sum_probs=33.2
Q ss_pred CCcceeecchHHHHHHHHHhcc-CCCCCCeEEEECCC-CCH-HHHHHHHhCCeEEEEcCCC
Q 030935 45 EEYGLFVWPCSVILAEYVWQQR-YRFSGANVVELGAG-TSL-PGLVAAKVGSNVTLTDDSN 102 (169)
Q Consensus 45 ~~~g~~~W~~~~~La~~l~~~~-~~~~~~~vLElGcG-tGl-~~l~~a~~ga~V~~~D~~~ 102 (169)
.++|..+|.+ +.+.. -...||.++=.|-| +|- .+..+.-.|++|++|++++
T Consensus 189 YGtgqS~~Dg-------I~RaTn~liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDP 242 (420)
T COG0499 189 YGTGQSLLDG-------ILRATNVLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDP 242 (420)
T ss_pred cccchhHHHH-------HHhhhceeecCceEEEecccccchHHHHHhhcCCCeEEEEecCc
Confidence 3566677776 33322 24589999888777 442 2333334688999999996
No 371
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=74.25 E-value=23 Score=28.26 Aligned_cols=81 Identities=15% Similarity=0.104 Sum_probs=44.3
Q ss_pred CCCCCeEEEECCCCCHHH---HHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCC-----C
Q 030935 68 RFSGANVVELGAGTSLPG---LVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF-----D 137 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~---l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~-----~ 137 (169)
.++++++|=.|++.|+-. ..+++.|++|+++|.... ...+.+...+...+..+.....+..+... ... -
T Consensus 9 ~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~-~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~~ 87 (306)
T PRK07792 9 DLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASA-LDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVGL 87 (306)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCch-hHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 457889999998877532 344557889999987642 23444333344334333333333332110 000 1
Q ss_pred CCCcEEEEcCcC
Q 030935 138 LNPNIILGADVF 149 (169)
Q Consensus 138 ~~fDlIi~sd~i 149 (169)
.+.|++|.+--+
T Consensus 88 g~iD~li~nAG~ 99 (306)
T PRK07792 88 GGLDIVVNNAGI 99 (306)
T ss_pred CCCCEEEECCCC
Confidence 368998865543
No 372
>PRK09242 tropinone reductase; Provisional
Probab=73.40 E-value=28 Score=26.65 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=30.9
Q ss_pred CCCCCeEEEECCCCCHHHH---HHHHhCCeEEEEcCCCcHHHHHHHHHHHHHh
Q 030935 68 RFSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN 117 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l---~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n 117 (169)
.++++++|=.|++.|+-.. .+++.|++|++++.+. +-++....++...
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~--~~~~~~~~~l~~~ 56 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDA--DALAQARDELAEE 56 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH--HHHHHHHHHHHhh
Confidence 3468899999986654322 3344688999999874 4555555555433
No 373
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=73.06 E-value=9.7 Score=32.16 Aligned_cols=73 Identities=19% Similarity=0.245 Sum_probs=42.5
Q ss_pred CeEEEECCCCCHHHHHH----HHhC-CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCC-CCCCCcEEEE
Q 030935 72 ANVVELGAGTSLPGLVA----AKVG-SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASI-FDLNPNIILG 145 (169)
Q Consensus 72 ~~vLElGcGtGl~~l~~----a~~g-a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~-~~~~fDlIi~ 145 (169)
++||=||| |.+|... |+.+ .+|++.|.+. +..+.+..+.. ...+...++..+...-. .=..+|+||.
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~~d~~V~iAdRs~--~~~~~i~~~~~---~~v~~~~vD~~d~~al~~li~~~d~VIn 74 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQNGDGEVTIADRSK--EKCARIAELIG---GKVEALQVDAADVDALVALIKDFDLVIN 74 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhCCCceEEEEeCCH--HHHHHHHhhcc---ccceeEEecccChHHHHHHHhcCCEEEE
Confidence 47899999 4555444 4445 5899999983 35544444332 24556667666542210 0125699997
Q ss_pred cCcCCC
Q 030935 146 ADVFYD 151 (169)
Q Consensus 146 sd~iy~ 151 (169)
.-.-|.
T Consensus 75 ~~p~~~ 80 (389)
T COG1748 75 AAPPFV 80 (389)
T ss_pred eCCchh
Confidence 655543
No 374
>PRK05866 short chain dehydrogenase; Provisional
Probab=72.97 E-value=27 Score=27.70 Aligned_cols=78 Identities=17% Similarity=0.211 Sum_probs=44.1
Q ss_pred CCCCeEEEECCCCCHHHHHH----HHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCC------
Q 030935 69 FSGANVVELGAGTSLPGLVA----AKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------ 136 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~----a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~------ 136 (169)
+.++++|=.|++.|+ |..+ ++.|++|++++.+. +.++.+.+.+...+..+.+...+..+... ...
T Consensus 38 ~~~k~vlItGasggI-G~~la~~La~~G~~Vi~~~R~~--~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 114 (293)
T PRK05866 38 LTGKRILLTGASSGI-GEAAAEQFARRGATVVAVARRE--DLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKR 114 (293)
T ss_pred CCCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 467889999976554 4433 44688999999884 45555554444333333344444433211 000
Q ss_pred CCCCcEEEEcCcC
Q 030935 137 DLNPNIILGADVF 149 (169)
Q Consensus 137 ~~~fDlIi~sd~i 149 (169)
-.+.|+++.+--+
T Consensus 115 ~g~id~li~~AG~ 127 (293)
T PRK05866 115 IGGVDILINNAGR 127 (293)
T ss_pred cCCCCEEEECCCC
Confidence 1267999866543
No 375
>PRK07063 short chain dehydrogenase; Provisional
Probab=72.69 E-value=30 Score=26.47 Aligned_cols=78 Identities=12% Similarity=0.091 Sum_probs=43.4
Q ss_pred CCCCeEEEECCCCCHHHH----HHHHhCCeEEEEcCCCcHHHHHHHHHHHHH--hCCcceEEEEEcCCCCc--CCC----
Q 030935 69 FSGANVVELGAGTSLPGL----VAAKVGSNVTLTDDSNRIEVLKNMRRVCEM--NKLNCRVMGLTWGFLDA--SIF---- 136 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l----~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~--n~~~~~~~~l~~~~~~~--~~~---- 136 (169)
++++++|=.|++.|+ |. .+++.|++|++++.++ +-++.....+.. .+..+.+...+..+... ...
T Consensus 5 l~~k~vlVtGas~gI-G~~~a~~l~~~G~~vv~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 81 (260)
T PRK07063 5 LAGKVALVTGAAQGI-GAAIARAFAREGAAVALADLDA--ALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAE 81 (260)
T ss_pred cCCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHH
Confidence 467899999987554 43 3445688999999874 355544444443 22233333344333211 000
Q ss_pred --CCCCcEEEEcCcC
Q 030935 137 --DLNPNIILGADVF 149 (169)
Q Consensus 137 --~~~fDlIi~sd~i 149 (169)
-.++|++|.+--+
T Consensus 82 ~~~g~id~li~~ag~ 96 (260)
T PRK07063 82 EAFGPLDVLVNNAGI 96 (260)
T ss_pred HHhCCCcEEEECCCc
Confidence 1368998866543
No 376
>PRK07890 short chain dehydrogenase; Provisional
Probab=72.51 E-value=34 Score=26.04 Aligned_cols=79 Identities=18% Similarity=0.111 Sum_probs=43.4
Q ss_pred CCCCeEEEECCCCCHHH---HHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc------CC--CC
Q 030935 69 FSGANVVELGAGTSLPG---LVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA------SI--FD 137 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~---l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~------~~--~~ 137 (169)
.+++++|=.|++.|+-. ..+++.|++|++++.++ .-++.+...+...+........+..+... .. .-
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTA--ERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERF 80 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCH--HHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHc
Confidence 35678998887655332 23445688999999884 34454444444333333334444433211 00 01
Q ss_pred CCCcEEEEcCcC
Q 030935 138 LNPNIILGADVF 149 (169)
Q Consensus 138 ~~fDlIi~sd~i 149 (169)
.++|+|+.+--.
T Consensus 81 g~~d~vi~~ag~ 92 (258)
T PRK07890 81 GRVDALVNNAFR 92 (258)
T ss_pred CCccEEEECCcc
Confidence 367998876644
No 377
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=72.45 E-value=12 Score=28.73 Aligned_cols=34 Identities=29% Similarity=0.387 Sum_probs=24.5
Q ss_pred CCCCeEEEECCC-CC-HHHHHHHHhCC-eEEEEcCCC
Q 030935 69 FSGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDSN 102 (169)
Q Consensus 69 ~~~~~vLElGcG-tG-l~~l~~a~~ga-~V~~~D~~~ 102 (169)
+++.+|+=+||| .| -+...+++.|. +++.+|.+.
T Consensus 19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 356799999998 34 44556677776 788887663
No 378
>PRK07576 short chain dehydrogenase; Provisional
Probab=72.00 E-value=33 Score=26.52 Aligned_cols=76 Identities=22% Similarity=0.196 Sum_probs=40.4
Q ss_pred CCCCeEEEECCCCCHHHHHH----HHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCC------
Q 030935 69 FSGANVVELGAGTSLPGLVA----AKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------ 136 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~----a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~------ 136 (169)
++++++|=.|+ +|.+|..+ +..|++|++++.++ +-++.....+...+....+...+..+... ...
T Consensus 7 ~~~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~ 83 (264)
T PRK07576 7 FAGKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQ--EKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADE 83 (264)
T ss_pred CCCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 46788998986 44445443 44688999999874 34443333343333233333344332111 000
Q ss_pred CCCCcEEEEcC
Q 030935 137 DLNPNIILGAD 147 (169)
Q Consensus 137 ~~~fDlIi~sd 147 (169)
..++|++|.+-
T Consensus 84 ~~~iD~vi~~a 94 (264)
T PRK07576 84 FGPIDVLVSGA 94 (264)
T ss_pred cCCCCEEEECC
Confidence 12679998654
No 379
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=71.92 E-value=20 Score=28.43 Aligned_cols=42 Identities=29% Similarity=0.372 Sum_probs=27.6
Q ss_pred CCCCCeEEEECCC-CCHHHHHHHH-hCCeEEEEcCCCcHHHHHHHH
Q 030935 68 RFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 68 ~~~~~~vLElGcG-tGl~~l~~a~-~ga~V~~~D~~~~~~~l~~~~ 111 (169)
..++.+||-.|+| .|...+.+|+ .|.+|++++.++ +..+.++
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~--~~~~~~~ 206 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKE--EKLELAK 206 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCH--HHHHHHH
Confidence 4467788888765 3555555555 577999998884 4555543
No 380
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=71.88 E-value=15 Score=30.70 Aligned_cols=33 Identities=27% Similarity=0.397 Sum_probs=24.8
Q ss_pred CCCCeEEEECCC-CC-HHHHHHHHhCC-eEEEEcCC
Q 030935 69 FSGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDS 101 (169)
Q Consensus 69 ~~~~~vLElGcG-tG-l~~l~~a~~ga-~V~~~D~~ 101 (169)
+++++||=+||| .| .+...+++.|. +++.+|.+
T Consensus 133 l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 133 LLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 467799999998 34 34556677787 79999987
No 381
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=71.71 E-value=27 Score=28.10 Aligned_cols=50 Identities=12% Similarity=0.203 Sum_probs=33.5
Q ss_pred cchHH-HHHHHHHhccCCCCCCeEEEECCC--CCHH-HHHHHHhCCeEEEEcCC
Q 030935 52 WPCSV-ILAEYVWQQRYRFSGANVVELGAG--TSLP-GLVAAKVGSNVTLTDDS 101 (169)
Q Consensus 52 W~~~~-~La~~l~~~~~~~~~~~vLElGcG--tGl~-~l~~a~~ga~V~~~D~~ 101 (169)
.|++- -+.+.+.+....++|++|+=+|+| .|.. +..++..|+.|+.++..
T Consensus 139 ~p~T~~gii~~L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~ 192 (283)
T PRK14192 139 GSATPAGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSR 192 (283)
T ss_pred cCCcHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 45544 333444455556799999999999 4644 44556678899988874
No 382
>PLN02780 ketoreductase/ oxidoreductase
Probab=71.54 E-value=25 Score=28.42 Aligned_cols=45 Identities=18% Similarity=0.243 Sum_probs=31.0
Q ss_pred CCCeEEEECCCCCH---HHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHH
Q 030935 70 SGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM 116 (169)
Q Consensus 70 ~~~~vLElGcGtGl---~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~ 116 (169)
.|+.+|=.|++.|+ ++..+++.|++|++++.++ +-++.+.+.++.
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~--~~l~~~~~~l~~ 99 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNP--DKLKDVSDSIQS 99 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCH--HHHHHHHHHHHH
Confidence 47889999987664 2334455688999999984 466665555544
No 383
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=71.35 E-value=19 Score=28.19 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=23.4
Q ss_pred CCCCeEEEECCC-CC-HHHHHHHHhCC-eEEEEcCCC
Q 030935 69 FSGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDSN 102 (169)
Q Consensus 69 ~~~~~vLElGcG-tG-l~~l~~a~~ga-~V~~~D~~~ 102 (169)
+++++|+=+||| .| -+...++..|. +++.+|.+.
T Consensus 30 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 30 LKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred hcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 467899999997 33 23445566675 788888764
No 384
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=71.23 E-value=31 Score=26.27 Aligned_cols=78 Identities=10% Similarity=0.141 Sum_probs=43.3
Q ss_pred CCCCeEEEECCCCCHHHHH----HHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CC----C--
Q 030935 69 FSGANVVELGAGTSLPGLV----AAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SI----F-- 136 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~----~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~----~-- 136 (169)
++++++|=.|++.| +|.. +++.|++|++++.++ +-++.+...+...+........+..+... .. .
T Consensus 7 l~~k~~lItGas~g-iG~~ia~~L~~~G~~vvl~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (254)
T PRK08085 7 LAGKNILITGSAQG-IGFLLATGLAEYGAEIIINDITA--ERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKD 83 (254)
T ss_pred CCCCEEEEECCCCh-HHHHHHHHHHHcCCEEEEEcCCH--HHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHh
Confidence 46788999996655 4443 344588999999874 34444444444333333333344443211 00 0
Q ss_pred CCCCcEEEEcCcC
Q 030935 137 DLNPNIILGADVF 149 (169)
Q Consensus 137 ~~~fDlIi~sd~i 149 (169)
-.++|+|+.+--.
T Consensus 84 ~~~id~vi~~ag~ 96 (254)
T PRK08085 84 IGPIDVLINNAGI 96 (254)
T ss_pred cCCCCEEEECCCc
Confidence 1368999976644
No 385
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=71.21 E-value=23 Score=28.64 Aligned_cols=83 Identities=14% Similarity=0.013 Sum_probs=53.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCc
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~ 148 (169)
-+|-...|||+-.|..+-.+.+++-.|+++|.-+ |.++. -..+. +....-+.+.-.....+.|..+| |.
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng~---ma~sL----~dtg~---v~h~r~DGfk~~P~r~~idWmVC-Dm 278 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKRNMRVYAVDNGP---MAQSL----MDTGQ---VTHLREDGFKFRPTRSNIDWMVC-DM 278 (358)
T ss_pred cCCceeeecccCCCccchhhhhcceEEEEeccch---hhhhh----hcccc---eeeeeccCcccccCCCCCceEEe-eh
Confidence 3567899999999999999999999999999874 43332 11221 22121111110113458899998 77
Q ss_pred CCCCCChHHHHHHH
Q 030935 149 FYDASGKICAFEIL 162 (169)
Q Consensus 149 iy~~~~~~~l~~~l 162 (169)
+--+.-...++..+
T Consensus 279 VEkP~rv~~li~~W 292 (358)
T COG2933 279 VEKPARVAALIAKW 292 (358)
T ss_pred hcCcHHHHHHHHHH
Confidence 77666666655544
No 386
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=70.84 E-value=15 Score=30.58 Aligned_cols=44 Identities=25% Similarity=0.354 Sum_probs=33.1
Q ss_pred CCCCCCeEEEECCC-CCHHHHHHHH-hCC-eEEEEcCCCcHHHHHHHHH
Q 030935 67 YRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRR 112 (169)
Q Consensus 67 ~~~~~~~vLElGcG-tGl~~l~~a~-~ga-~V~~~D~~~~~~~l~~~~~ 112 (169)
...+|.+|.=+||| -|+.++.-|+ .|+ +++++|+++ +-++.+++
T Consensus 182 ~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~--~Kl~~A~~ 228 (366)
T COG1062 182 KVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINP--EKLELAKK 228 (366)
T ss_pred cCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCH--HHHHHHHh
Confidence 44578899999998 7888887776 466 899999995 45555554
No 387
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=70.76 E-value=34 Score=26.33 Aligned_cols=80 Identities=13% Similarity=0.049 Sum_probs=46.6
Q ss_pred CCCCeEEEECCCCCHHH---HHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCC------C
Q 030935 69 FSGANVVELGAGTSLPG---LVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------D 137 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~---l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~------~ 137 (169)
++++++|=.|++.|+-. ..+++.|++|++++.++ +-++.+..+++..+..+.....+..+... ... -
T Consensus 8 ~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 85 (265)
T PRK07097 8 LKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQ--ELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEV 85 (265)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCH--HHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 46788999998876543 23455688999998774 35555555555444444444444433211 000 1
Q ss_pred CCCcEEEEcCcCC
Q 030935 138 LNPNIILGADVFY 150 (169)
Q Consensus 138 ~~fDlIi~sd~iy 150 (169)
.++|++|.+--+.
T Consensus 86 ~~id~li~~ag~~ 98 (265)
T PRK07097 86 GVIDILVNNAGII 98 (265)
T ss_pred CCCCEEEECCCCC
Confidence 3689999766553
No 388
>PRK07478 short chain dehydrogenase; Provisional
Probab=70.62 E-value=36 Score=25.95 Aligned_cols=79 Identities=10% Similarity=0.029 Sum_probs=43.3
Q ss_pred CCCCeEEEECCCCCHHH---HHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCC------C
Q 030935 69 FSGANVVELGAGTSLPG---LVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------D 137 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~---l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~------~ 137 (169)
++++++|=.|++.|+-. ..+++.|++|++++.++ +-++.+...++..+.++.+...+..+... ... -
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQ--AELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERF 81 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 45778888887755332 23345688999998874 34555544454444444333344333211 000 1
Q ss_pred CCCcEEEEcCcC
Q 030935 138 LNPNIILGADVF 149 (169)
Q Consensus 138 ~~fDlIi~sd~i 149 (169)
.++|++|.+--+
T Consensus 82 ~~id~li~~ag~ 93 (254)
T PRK07478 82 GGLDIAFNNAGT 93 (254)
T ss_pred CCCCEEEECCCC
Confidence 268988865533
No 389
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=70.59 E-value=36 Score=25.06 Aligned_cols=30 Identities=30% Similarity=0.300 Sum_probs=21.5
Q ss_pred eEEEECCC-CC-HHHHHHHHhCC-eEEEEcCCC
Q 030935 73 NVVELGAG-TS-LPGLVAAKVGS-NVTLTDDSN 102 (169)
Q Consensus 73 ~vLElGcG-tG-l~~l~~a~~ga-~V~~~D~~~ 102 (169)
+|+=+||| .| .+...+++.|. +++.+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 47778888 34 34556677787 799999884
No 390
>PRK07985 oxidoreductase; Provisional
Probab=70.22 E-value=36 Score=26.98 Aligned_cols=81 Identities=10% Similarity=0.049 Sum_probs=42.7
Q ss_pred CCCCCeEEEECCCCCHH---HHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc------CC--C
Q 030935 68 RFSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA------SI--F 136 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~---~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~------~~--~ 136 (169)
.++++++|=.|++.|+- +..+++.|++|++++.+...+-.+.+...+...+..+.+...+..+... .. .
T Consensus 46 ~~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 125 (294)
T PRK07985 46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKA 125 (294)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 35788999999765532 2344456889998876532223444444343334333334444433211 00 0
Q ss_pred CCCCcEEEEcCc
Q 030935 137 DLNPNIILGADV 148 (169)
Q Consensus 137 ~~~fDlIi~sd~ 148 (169)
-.+.|+++.+--
T Consensus 126 ~g~id~lv~~Ag 137 (294)
T PRK07985 126 LGGLDIMALVAG 137 (294)
T ss_pred hCCCCEEEECCC
Confidence 126788886543
No 391
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=70.10 E-value=14 Score=30.34 Aligned_cols=34 Identities=24% Similarity=0.264 Sum_probs=22.4
Q ss_pred CCCCeEEEECCC-CCHHHHHHHH-hCCeEEEEcCCC
Q 030935 69 FSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSN 102 (169)
Q Consensus 69 ~~~~~vLElGcG-tGl~~l~~a~-~ga~V~~~D~~~ 102 (169)
.+|.+||=.|+| .|+..+.+|+ .|++|++++.++
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~ 217 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSS 217 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 367788778875 3444444444 578888887764
No 392
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=69.96 E-value=25 Score=26.52 Aligned_cols=32 Identities=25% Similarity=0.335 Sum_probs=21.9
Q ss_pred CCCeEEEECCCC-C-HHHHHHHHhCC-eEEEEcCC
Q 030935 70 SGANVVELGAGT-S-LPGLVAAKVGS-NVTLTDDS 101 (169)
Q Consensus 70 ~~~~vLElGcGt-G-l~~l~~a~~ga-~V~~~D~~ 101 (169)
++.+|+=+|||. | -+...++..|. +++.+|.+
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 567999999994 2 22334555676 78888876
No 393
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=69.86 E-value=34 Score=26.25 Aligned_cols=78 Identities=14% Similarity=0.099 Sum_probs=41.5
Q ss_pred CCCCeEEEECCCCCHHH---HHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCC------C
Q 030935 69 FSGANVVELGAGTSLPG---LVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------D 137 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~---l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~------~ 137 (169)
++++++|=.|++.|+-. ..+++.|++|++++.++. +.....++..+.++.+...+..+... ... -
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~----~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (251)
T PRK12481 6 LNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEA----PETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVM 81 (251)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchH----HHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHc
Confidence 46889999997766432 234456889999877531 22223333333333334444433211 000 1
Q ss_pred CCCcEEEEcCcCC
Q 030935 138 LNPNIILGADVFY 150 (169)
Q Consensus 138 ~~fDlIi~sd~iy 150 (169)
.++|+++.+--+.
T Consensus 82 g~iD~lv~~ag~~ 94 (251)
T PRK12481 82 GHIDILINNAGII 94 (251)
T ss_pred CCCCEEEECCCcC
Confidence 3689888765443
No 394
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=69.86 E-value=38 Score=25.90 Aligned_cols=86 Identities=14% Similarity=0.175 Sum_probs=44.9
Q ss_pred HHHHHhccCCCCCCeEEEECCCCCHHHH---HHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC-
Q 030935 59 AEYVWQQRYRFSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS- 134 (169)
Q Consensus 59 a~~l~~~~~~~~~~~vLElGcGtGl~~l---~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~- 134 (169)
.+|..... .++++++|=.|++.|+-.. .+++.|++|++++.++ -.+.+.+.+...+....+...+..+....
T Consensus 4 ~~~~~~~~-~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~ 79 (258)
T PRK06935 4 DKFSMDFF-SLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGT---NWDETRRLIEKEGRKVTFVQVDLTKPESAE 79 (258)
T ss_pred hhhccccc-cCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCc---HHHHHHHHHHhcCCceEEEEcCCCCHHHHH
Confidence 34443322 3578899999987764432 3355688999888763 23333333333333333333443332110
Q ss_pred -CC------CCCCcEEEEcCc
Q 030935 135 -IF------DLNPNIILGADV 148 (169)
Q Consensus 135 -~~------~~~fDlIi~sd~ 148 (169)
.. -.++|++|.+--
T Consensus 80 ~~~~~~~~~~g~id~li~~ag 100 (258)
T PRK06935 80 KVVKEALEEFGKIDILVNNAG 100 (258)
T ss_pred HHHHHHHHHcCCCCEEEECCC
Confidence 00 126798886543
No 395
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=69.83 E-value=24 Score=31.38 Aligned_cols=36 Identities=22% Similarity=0.048 Sum_probs=24.9
Q ss_pred cCCCCCCeEEEECCCCCHHHHHHH----HhCCeEEEEcCCC
Q 030935 66 RYRFSGANVVELGAGTSLPGLVAA----KVGSNVTLTDDSN 102 (169)
Q Consensus 66 ~~~~~~~~vLElGcGtGl~~l~~a----~~ga~V~~~D~~~ 102 (169)
.....|++||=.|+ +|.+|..++ +.|.+|++++.+.
T Consensus 75 ~~~~~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ 114 (576)
T PLN03209 75 LDTKDEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSA 114 (576)
T ss_pred cccCCCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 34456778888886 466666554 3578999998874
No 396
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=69.53 E-value=39 Score=25.43 Aligned_cols=43 Identities=33% Similarity=0.307 Sum_probs=27.9
Q ss_pred CCCeEEEECCCCCHHHHHHHH----hCCeEEEEcCCCcHHHHHHHHHHHH
Q 030935 70 SGANVVELGAGTSLPGLVAAK----VGSNVTLTDDSNRIEVLKNMRRVCE 115 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~----~ga~V~~~D~~~~~~~l~~~~~n~~ 115 (169)
+++++|=.|+ +|.+|..+++ .|++|++++.++ .-.+.....+.
T Consensus 6 ~~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~--~~~~~~~~~~~ 52 (239)
T PRK07666 6 QGKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTE--ENLKAVAEEVE 52 (239)
T ss_pred CCCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHH
Confidence 5678888885 6667765544 588999999874 33443333343
No 397
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=69.44 E-value=42 Score=25.33 Aligned_cols=76 Identities=12% Similarity=0.085 Sum_probs=41.5
Q ss_pred CCCeEEEECCCCCHHHHHHH----HhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCC------C
Q 030935 70 SGANVVELGAGTSLPGLVAA----KVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------D 137 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a----~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~------~ 137 (169)
+++++|=.|++ |.+|..++ +.|++|++++.+. +....+...+...+....+...+..+... ... -
T Consensus 2 ~~~~ilItGas-~~iG~~la~~l~~~g~~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 78 (250)
T TIGR03206 2 KDKTAIVTGGG-GGIGGATCRRFAEEGAKVAVFDLNR--EAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQAL 78 (250)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEecCCH--HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 56788888865 55555444 4578999999874 34444444444433334444444433211 000 1
Q ss_pred CCCcEEEEcCc
Q 030935 138 LNPNIILGADV 148 (169)
Q Consensus 138 ~~fDlIi~sd~ 148 (169)
.+.|++|.+-.
T Consensus 79 ~~~d~vi~~ag 89 (250)
T TIGR03206 79 GPVDVLVNNAG 89 (250)
T ss_pred CCCCEEEECCC
Confidence 25787776554
No 398
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=69.11 E-value=7.2 Score=33.04 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=17.0
Q ss_pred CCCHHH----HHHHHhCCeEEEEcCCC
Q 030935 80 GTSLPG----LVAAKVGSNVTLTDDSN 102 (169)
Q Consensus 80 GtGl~~----l~~a~~ga~V~~~D~~~ 102 (169)
|+|.+| ..+|+.|.+|+++|+++
T Consensus 7 GtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 7 GTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 445444 46677888999999995
No 399
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=69.10 E-value=30 Score=28.09 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=22.7
Q ss_pred CCCCeEEEECCC-CCHHHHHHHH-hCCeEEEEcCC
Q 030935 69 FSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDS 101 (169)
Q Consensus 69 ~~~~~vLElGcG-tGl~~l~~a~-~ga~V~~~D~~ 101 (169)
.++.+||=.|+| .|...+.+++ .|++|++++.+
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~ 205 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRR 205 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence 467899988875 3444444444 57799999873
No 400
>PRK07326 short chain dehydrogenase; Provisional
Probab=69.09 E-value=37 Score=25.46 Aligned_cols=77 Identities=12% Similarity=0.023 Sum_probs=41.1
Q ss_pred CCCeEEEECCCCCHHHHHHHH----hCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCC------C
Q 030935 70 SGANVVELGAGTSLPGLVAAK----VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------D 137 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~----~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~------~ 137 (169)
.++++|=.|+ +|.+|..+++ .|++|++++.++ .-...+...+... ..+.....+..+... ... -
T Consensus 5 ~~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~--~~~~~~~~~l~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (237)
T PRK07326 5 KGKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQ--KELEEAAAELNNK-GNVLGLAADVRDEADVQRAVDAIVAAF 80 (237)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCH--HHHHHHHHHHhcc-CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 5678999995 5666655543 578999998873 3444443333322 223333333332211 000 1
Q ss_pred CCCcEEEEcCcCC
Q 030935 138 LNPNIILGADVFY 150 (169)
Q Consensus 138 ~~fDlIi~sd~iy 150 (169)
.++|+||.+.-.+
T Consensus 81 ~~~d~vi~~ag~~ 93 (237)
T PRK07326 81 GGLDVLIANAGVG 93 (237)
T ss_pred CCCCEEEECCCCC
Confidence 2689888665443
No 401
>PRK07102 short chain dehydrogenase; Provisional
Probab=69.00 E-value=33 Score=25.93 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=20.8
Q ss_pred CeEEEECCCCCHHHHHHH----HhCCeEEEEcCCC
Q 030935 72 ANVVELGAGTSLPGLVAA----KVGSNVTLTDDSN 102 (169)
Q Consensus 72 ~~vLElGcGtGl~~l~~a----~~ga~V~~~D~~~ 102 (169)
+++|=.|+ +|.+|..++ +.|++|++++.++
T Consensus 2 ~~vlItGa-s~giG~~~a~~l~~~G~~Vi~~~r~~ 35 (243)
T PRK07102 2 KKILIIGA-TSDIARACARRYAAAGARLYLAARDV 35 (243)
T ss_pred cEEEEEcC-CcHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 46777774 455665544 3578999999885
No 402
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=68.78 E-value=30 Score=31.10 Aligned_cols=97 Identities=15% Similarity=0.031 Sum_probs=52.1
Q ss_pred CeEEEECCCCCHHHHHHHHhC-------------C-eEEEEcCCCc-HHHHHHH-----------HHHHHH-----hCCc
Q 030935 72 ANVVELGAGTSLPGLVAAKVG-------------S-NVTLTDDSNR-IEVLKNM-----------RRVCEM-----NKLN 120 (169)
Q Consensus 72 ~~vLElGcGtGl~~l~~a~~g-------------a-~V~~~D~~~~-~~~l~~~-----------~~n~~~-----n~~~ 120 (169)
-+|+|+|-|+|+-.+.+.+.- . +++.+|..+- .+-+..+ +.-++. .++.
T Consensus 59 ~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~ 138 (662)
T PRK01747 59 FVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGCH 138 (662)
T ss_pred EEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCce
Confidence 489999999998777665311 1 6888887641 1112111 111111 1110
Q ss_pred ------c-eEEEEEcCCCCcCCC--CCCCcEEEEcCcCC---CCC-ChHHHHHHHHHhccCC
Q 030935 121 ------C-RVMGLTWGFLDASIF--DLNPNIILGADVFY---DAS-GKICAFEILICSLFPI 169 (169)
Q Consensus 121 ------~-~~~~l~~~~~~~~~~--~~~fDlIi~sd~iy---~~~-~~~~l~~~l~~~L~p~ 169 (169)
. -...+.||+....+. ..++|+++. |-+- +++ --+.+|+.|++.++|+
T Consensus 139 ~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~l-D~FsP~~np~~W~~~~~~~l~~~~~~~ 199 (662)
T PRK01747 139 RLLFDDGRVTLDLWFGDANELLPQLDARADAWFL-DGFAPAKNPDMWSPNLFNALARLARPG 199 (662)
T ss_pred EEEecCCcEEEEEEecCHHHHHHhccccccEEEe-CCCCCccChhhccHHHHHHHHHHhCCC
Confidence 0 123366676543222 235677774 4332 222 1377999999999885
No 403
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=68.64 E-value=20 Score=29.33 Aligned_cols=34 Identities=26% Similarity=0.295 Sum_probs=23.2
Q ss_pred CCCCCCeEEEECCCCCHHHHHH---HH-hCC-eEEEEcCCC
Q 030935 67 YRFSGANVVELGAGTSLPGLVA---AK-VGS-NVTLTDDSN 102 (169)
Q Consensus 67 ~~~~~~~vLElGcGtGl~~l~~---a~-~ga-~V~~~D~~~ 102 (169)
...++.+||=+|+ |.+|+.+ |+ .|+ +|++++.++
T Consensus 183 ~~~~g~~VlV~G~--G~vG~~a~~~ak~~G~~~vi~~~~~~ 221 (368)
T cd08300 183 KVEPGSTVAVFGL--GAVGLAVIQGAKAAGASRIIGIDINP 221 (368)
T ss_pred CCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence 3456888888886 4455443 44 577 699998874
No 404
>PRK06701 short chain dehydrogenase; Provisional
Probab=68.61 E-value=38 Score=26.81 Aligned_cols=79 Identities=11% Similarity=0.152 Sum_probs=42.1
Q ss_pred CCCCCeEEEECCCCCHHH---HHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCC------
Q 030935 68 RFSGANVVELGAGTSLPG---LVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------ 136 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~---l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~------ 136 (169)
.++++++|=.|++.|+-. ..+++.|++|++++.+.. ..++.....++..+.++.+...+..+... ...
T Consensus 43 ~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~ 121 (290)
T PRK06701 43 KLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEH-EDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRE 121 (290)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcc-hHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 446788999997665432 233456889999988742 23333333344334334344444433211 000
Q ss_pred CCCCcEEEEcC
Q 030935 137 DLNPNIILGAD 147 (169)
Q Consensus 137 ~~~fDlIi~sd 147 (169)
-.++|+||.+-
T Consensus 122 ~~~iD~lI~~A 132 (290)
T PRK06701 122 LGRLDILVNNA 132 (290)
T ss_pred cCCCCEEEECC
Confidence 12679888543
No 405
>PRK06194 hypothetical protein; Provisional
Probab=68.60 E-value=36 Score=26.50 Aligned_cols=79 Identities=16% Similarity=0.085 Sum_probs=42.4
Q ss_pred CCCCeEEEECCCCCHHHHHH----HHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCC------
Q 030935 69 FSGANVVELGAGTSLPGLVA----AKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------ 136 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~----a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~------ 136 (169)
++++++|=.|++ |.+|..+ ++.|++|+++|.+. +.++.....+...+..+.+...+..+... ...
T Consensus 4 ~~~k~vlVtGas-ggIG~~la~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~ 80 (287)
T PRK06194 4 FAGKVAVITGAA-SGFGLAFARIGAALGMKLVLADVQQ--DALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALER 80 (287)
T ss_pred CCCCEEEEeCCc-cHHHHHHHHHHHHCCCEEEEEeCCh--HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 356788877755 4455544 44588999999874 34444443343333333333344333211 000
Q ss_pred CCCCcEEEEcCcCC
Q 030935 137 DLNPNIILGADVFY 150 (169)
Q Consensus 137 ~~~fDlIi~sd~iy 150 (169)
..++|+|+.+--+.
T Consensus 81 ~g~id~vi~~Ag~~ 94 (287)
T PRK06194 81 FGAVHLLFNNAGVG 94 (287)
T ss_pred cCCCCEEEECCCCC
Confidence 12579988766543
No 406
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=68.53 E-value=7 Score=32.03 Aligned_cols=55 Identities=16% Similarity=0.145 Sum_probs=41.1
Q ss_pred cCCcceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCC
Q 030935 44 KEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDS 101 (169)
Q Consensus 44 ~~~~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~ 101 (169)
.-+|..++|+--..+-.|+.+. -..+.|+.||||.-.+..-+...+ .++..+|++
T Consensus 64 nRGy~~R~~aI~~~v~~Fl~~~---~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievD 120 (335)
T KOG2918|consen 64 NRGYWARTMAIRHAVRAFLEQT---DGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVD 120 (335)
T ss_pred cchhhHHHHHHHHHHHHHHHhc---CCceEEEEcCCCccchhhhhhccCCCCcceEEEec
Confidence 4578889999888888888772 134589999999998887777765 356555555
No 407
>PRK07109 short chain dehydrogenase; Provisional
Probab=68.15 E-value=45 Score=27.09 Aligned_cols=79 Identities=14% Similarity=0.019 Sum_probs=45.5
Q ss_pred CCCCeEEEECCCCCHHHH---HHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC--CC------C
Q 030935 69 FSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS--IF------D 137 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l---~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~--~~------~ 137 (169)
.++++||=.|++.|+-.. .+++.|++|++++.++ +-++.....++..+.+......+..+...- .. -
T Consensus 6 l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~--~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~ 83 (334)
T PRK07109 6 IGRQVVVITGASAGVGRATARAFARRGAKVVLLARGE--EGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEEL 83 (334)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHC
Confidence 467788888976554322 3345688999999873 455555555554454444444444432210 00 1
Q ss_pred CCCcEEEEcCcC
Q 030935 138 LNPNIILGADVF 149 (169)
Q Consensus 138 ~~fDlIi~sd~i 149 (169)
.++|++|.+--+
T Consensus 84 g~iD~lInnAg~ 95 (334)
T PRK07109 84 GPIDTWVNNAMV 95 (334)
T ss_pred CCCCEEEECCCc
Confidence 268998865543
No 408
>PRK07677 short chain dehydrogenase; Provisional
Probab=68.12 E-value=44 Score=25.44 Aligned_cols=75 Identities=15% Similarity=0.074 Sum_probs=39.4
Q ss_pred CCeEEEECCCCCHHH---HHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc------CCC--CCC
Q 030935 71 GANVVELGAGTSLPG---LVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA------SIF--DLN 139 (169)
Q Consensus 71 ~~~vLElGcGtGl~~---l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~------~~~--~~~ 139 (169)
++++|=.|++.|+-. ..+++.|++|++++.+. ..++.+...+...+....+...+..+... ... -.+
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTK--EKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGR 78 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 467888888666332 23345688999998874 34554444444333333333344332111 000 126
Q ss_pred CcEEEEcC
Q 030935 140 PNIILGAD 147 (169)
Q Consensus 140 fDlIi~sd 147 (169)
.|+||.+-
T Consensus 79 id~lI~~a 86 (252)
T PRK07677 79 IDALINNA 86 (252)
T ss_pred ccEEEECC
Confidence 79988654
No 409
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=67.76 E-value=33 Score=28.95 Aligned_cols=72 Identities=24% Similarity=0.365 Sum_probs=40.0
Q ss_pred CCCCeEEEECCCCCHHHHHH----HHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEE
Q 030935 69 FSGANVVELGAGTSLPGLVA----AKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIIL 144 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~----a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi 144 (169)
+++++|+=+|+|. .|+.+ ++.|++|+++|.+.. +.++...+.+...+.. +. .++.... ....+|+|+
T Consensus 3 ~~~k~v~iiG~g~--~G~~~A~~l~~~G~~V~~~d~~~~-~~~~~~~~~l~~~~~~--~~---~~~~~~~-~~~~~d~vv 73 (450)
T PRK14106 3 LKGKKVLVVGAGV--SGLALAKFLKKLGAKVILTDEKEE-DQLKEALEELGELGIE--LV---LGEYPEE-FLEGVDLVV 73 (450)
T ss_pred cCCCEEEEECCCH--HHHHHHHHHHHCCCEEEEEeCCch-HHHHHHHHHHHhcCCE--EE---eCCcchh-HhhcCCEEE
Confidence 3678999999876 44444 446899999999853 2333322334433432 22 1221111 123689887
Q ss_pred EcCcC
Q 030935 145 GADVF 149 (169)
Q Consensus 145 ~sd~i 149 (169)
.+--+
T Consensus 74 ~~~g~ 78 (450)
T PRK14106 74 VSPGV 78 (450)
T ss_pred ECCCC
Confidence 65544
No 410
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=67.51 E-value=28 Score=26.24 Aligned_cols=78 Identities=13% Similarity=0.048 Sum_probs=41.6
Q ss_pred CCCCeEEEECCCC-C-HHHHHHHHhCC-eEEEEcCCCc------------HH-----HHHHHHHHHHHhCCcceEEEEEc
Q 030935 69 FSGANVVELGAGT-S-LPGLVAAKVGS-NVTLTDDSNR------------IE-----VLKNMRRVCEMNKLNCRVMGLTW 128 (169)
Q Consensus 69 ~~~~~vLElGcGt-G-l~~l~~a~~ga-~V~~~D~~~~------------~~-----~l~~~~~n~~~n~~~~~~~~l~~ 128 (169)
+++.+||=+|||. | -+...++..|. +++.+|.+.- .+ =.+.++++++..+..+++....+
T Consensus 19 L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~ 98 (197)
T cd01492 19 LRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTD 98 (197)
T ss_pred HHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEec
Confidence 3567899999884 2 22334455676 7999987631 00 12334455555555555543333
Q ss_pred CCCCc-CCCCCCCcEEEEc
Q 030935 129 GFLDA-SIFDLNPNIILGA 146 (169)
Q Consensus 129 ~~~~~-~~~~~~fDlIi~s 146 (169)
.-... ...-..||+|+++
T Consensus 99 ~~~~~~~~~~~~~dvVi~~ 117 (197)
T cd01492 99 DISEKPEEFFSQFDVVVAT 117 (197)
T ss_pred CccccHHHHHhCCCEEEEC
Confidence 21110 0011389999965
No 411
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=67.42 E-value=17 Score=26.89 Aligned_cols=36 Identities=25% Similarity=0.316 Sum_probs=20.2
Q ss_pred CCCCCCeEEEECCC-CC-HHHHHHHHhCCeEEEEcCCC
Q 030935 67 YRFSGANVVELGAG-TS-LPGLVAAKVGSNVTLTDDSN 102 (169)
Q Consensus 67 ~~~~~~~vLElGcG-tG-l~~l~~a~~ga~V~~~D~~~ 102 (169)
-.+.|++++=+|-| +| .++..+..+|++|+.+|.++
T Consensus 19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 19 LMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred eeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 35689999888766 33 22233344688999999994
No 412
>PRK08703 short chain dehydrogenase; Provisional
Probab=67.41 E-value=31 Score=26.03 Aligned_cols=44 Identities=20% Similarity=0.233 Sum_probs=28.6
Q ss_pred CCCCeEEEECCCCCHHHHHHH----HhCCeEEEEcCCCcHHHHHHHHHHHH
Q 030935 69 FSGANVVELGAGTSLPGLVAA----KVGSNVTLTDDSNRIEVLKNMRRVCE 115 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a----~~ga~V~~~D~~~~~~~l~~~~~n~~ 115 (169)
++++++|=.||+ |.+|..++ +.|++|++++.++ +-++.....+.
T Consensus 4 l~~k~vlItG~s-ggiG~~la~~l~~~g~~V~~~~r~~--~~~~~~~~~l~ 51 (239)
T PRK08703 4 LSDKTILVTGAS-QGLGEQVAKAYAAAGATVILVARHQ--KKLEKVYDAIV 51 (239)
T ss_pred CCCCEEEEECCC-CcHHHHHHHHHHHcCCEEEEEeCCh--HHHHHHHHHHH
Confidence 467899999964 55554443 4588999999884 34444444443
No 413
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=67.38 E-value=34 Score=28.80 Aligned_cols=108 Identities=15% Similarity=0.079 Sum_probs=65.1
Q ss_pred cceeecchHH-HHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcce-EE
Q 030935 47 YGLFVWPCSV-ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCR-VM 124 (169)
Q Consensus 47 ~g~~~W~~~~-~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~-~~ 124 (169)
.-.+-|+++- +|-+++.... ..+ +||=++=.-|.++..++..+.. ..+|.- -.-..++.|++.|++... +.
T Consensus 23 ~~l~awdaade~ll~~~~~~~--~~~-~~~i~nd~fGal~~~l~~~~~~-~~~ds~---~~~~~~~~n~~~n~~~~~~~~ 95 (378)
T PRK15001 23 NPLQAWEAADEYLLQQLDDTE--IRG-PVLILNDAFGALSCALAEHKPY-SIGDSY---ISELATRENLRLNGIDESSVK 95 (378)
T ss_pred CcccccccHHHHHHHHHhhcc--cCC-CEEEEcCchhHHHHHHHhCCCC-eeehHH---HHHHHHHHHHHHcCCCcccce
Confidence 3478899863 3333333221 122 7999999999999999865443 334543 234578899999988643 22
Q ss_pred EEEcCCCCcCCCCCCCcEEEEcCcCCCCCC---hHHHHHHHHHhccCC
Q 030935 125 GLTWGFLDASIFDLNPNIILGADVFYDASG---KICAFEILICSLFPI 169 (169)
Q Consensus 125 ~l~~~~~~~~~~~~~fDlIi~sd~iy~~~~---~~~l~~~l~~~L~p~ 169 (169)
.+ ..... .+..+|+|+ +|.+.. ++..+..+...|.|+
T Consensus 96 ~~---~~~~~-~~~~~d~vl----~~~PK~~~~l~~~l~~l~~~l~~~ 135 (378)
T PRK15001 96 FL---DSTAD-YPQQPGVVL----IKVPKTLALLEQQLRALRKVVTSD 135 (378)
T ss_pred ee---ccccc-ccCCCCEEE----EEeCCCHHHHHHHHHHHHhhCCCC
Confidence 22 22122 344689887 355544 455666666677664
No 414
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=67.37 E-value=51 Score=24.92 Aligned_cols=77 Identities=17% Similarity=0.077 Sum_probs=42.6
Q ss_pred CCCeEEEECCCCCHHHHHHHH----hCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCC------C
Q 030935 70 SGANVVELGAGTSLPGLVAAK----VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------D 137 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~----~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~------~ 137 (169)
++++||=.|+ +|.+|..+++ .|.+|++++.++ +-.+.....++..+........+..+... ... -
T Consensus 3 ~~~~vlItG~-sg~iG~~la~~l~~~g~~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (258)
T PRK12429 3 KGKVALVTGA-ASGIGLEIALALAKEGAKVVIADLND--EAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETF 79 (258)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 5677886765 5666766655 477999999884 34444444444444444334344333211 000 1
Q ss_pred CCCcEEEEcCcC
Q 030935 138 LNPNIILGADVF 149 (169)
Q Consensus 138 ~~fDlIi~sd~i 149 (169)
..+|+||.+--.
T Consensus 80 ~~~d~vi~~a~~ 91 (258)
T PRK12429 80 GGVDILVNNAGI 91 (258)
T ss_pred CCCCEEEECCCC
Confidence 267988865433
No 415
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=67.31 E-value=24 Score=30.07 Aligned_cols=57 Identities=21% Similarity=0.322 Sum_probs=35.4
Q ss_pred hHHHHHHHHHhccCCCCCCeEEEECCC-CC-HHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhC
Q 030935 54 CSVILAEYVWQQRYRFSGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNK 118 (169)
Q Consensus 54 ~~~~La~~l~~~~~~~~~~~vLElGcG-tG-l~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~ 118 (169)
++..+|+-+. +.+++++||=+|+| .| ++.-.++..|. +|+..-- ..+.+++-++..+
T Consensus 164 aAv~lA~~~~---~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNR-----T~erA~~La~~~~ 223 (414)
T COG0373 164 AAVELAKRIF---GSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANR-----TLERAEELAKKLG 223 (414)
T ss_pred HHHHHHHHHh---cccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcC-----CHHHHHHHHHHhC
Confidence 3444444443 33688999999999 77 44556777775 6777654 3445555444444
No 416
>PRK07454 short chain dehydrogenase; Provisional
Probab=67.17 E-value=45 Score=25.13 Aligned_cols=78 Identities=15% Similarity=0.141 Sum_probs=42.9
Q ss_pred CCCeEEEECCCCCHHHHHHHH----hCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCC------C
Q 030935 70 SGANVVELGAGTSLPGLVAAK----VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------D 137 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~----~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~------~ 137 (169)
+++++|=.|+ +|.+|..+++ .|.+|++++.++ +-.+.....++..+..+.+...+..+... ... -
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQ--DALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQF 81 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4567888885 5666665544 578999999874 34444444343333333334344433211 000 1
Q ss_pred CCCcEEEEcCcCC
Q 030935 138 LNPNIILGADVFY 150 (169)
Q Consensus 138 ~~fDlIi~sd~iy 150 (169)
.+.|+++.+--..
T Consensus 82 ~~id~lv~~ag~~ 94 (241)
T PRK07454 82 GCPDVLINNAGMA 94 (241)
T ss_pred CCCCEEEECCCcc
Confidence 2579999766544
No 417
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=67.15 E-value=39 Score=25.01 Aligned_cols=34 Identities=26% Similarity=0.478 Sum_probs=22.6
Q ss_pred CCCCCeEEEECC-C-CCH-HHHHHHHhCCeEEEEcCC
Q 030935 68 RFSGANVVELGA-G-TSL-PGLVAAKVGSNVTLTDDS 101 (169)
Q Consensus 68 ~~~~~~vLElGc-G-tGl-~~l~~a~~ga~V~~~D~~ 101 (169)
.+++++++=+|+ | .|. ....+++.|++|+++..+
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 567889999986 3 232 223445567799998776
No 418
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=67.13 E-value=23 Score=28.95 Aligned_cols=34 Identities=24% Similarity=0.268 Sum_probs=23.3
Q ss_pred CCCCCCeEEEECCCCCHHHHHH---HH-hCC-eEEEEcCCC
Q 030935 67 YRFSGANVVELGAGTSLPGLVA---AK-VGS-NVTLTDDSN 102 (169)
Q Consensus 67 ~~~~~~~vLElGcGtGl~~l~~---a~-~ga-~V~~~D~~~ 102 (169)
...+|.+||=.|+ |.+|+.+ |+ .|+ +|++++.++
T Consensus 184 ~~~~g~~VlV~G~--g~vG~~a~q~ak~~G~~~vi~~~~~~ 222 (369)
T cd08301 184 KVKKGSTVAIFGL--GAVGLAVAEGARIRGASRIIGVDLNP 222 (369)
T ss_pred CCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence 4457888888886 5555544 33 577 799998774
No 419
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=67.00 E-value=17 Score=30.08 Aligned_cols=45 Identities=20% Similarity=0.275 Sum_probs=30.0
Q ss_pred cCCCCCCeEEEECCCC-CHHHHHHHH-hCC-eEEEEcCCCcHHHHHHHHH
Q 030935 66 RYRFSGANVVELGAGT-SLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRR 112 (169)
Q Consensus 66 ~~~~~~~~vLElGcGt-Gl~~l~~a~-~ga-~V~~~D~~~~~~~l~~~~~ 112 (169)
....+|.+|.=.|+|. |+.-+.-++ .|| +++++|+++ +=.+.+++
T Consensus 188 Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~--~Kf~~ak~ 235 (375)
T KOG0022|consen 188 AKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINP--DKFEKAKE 235 (375)
T ss_pred cccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCH--HHHHHHHh
Confidence 3455788888888873 444444454 577 899999995 45555543
No 420
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=66.93 E-value=12 Score=32.60 Aligned_cols=88 Identities=17% Similarity=0.046 Sum_probs=57.1
Q ss_pred CeEEEECCCCCHHHHHHHHhCC---eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCc
Q 030935 72 ANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (169)
Q Consensus 72 ~~vLElGcGtGl~~l~~a~~ga---~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~ 148 (169)
.+|+|..+|.|.++.++..... +|+-+.... .+.. +...|+-. .-.+|.+.. +..+..||+|=++.+
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~n---tL~v----IydRGLIG--~yhDWCE~f-sTYPRTYDLlHA~~l 436 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPN---TLPV----IYDRGLIG--VYHDWCEAF-STYPRTYDLLHADGL 436 (506)
T ss_pred eeeeeecccccHHHHHhccCCceEEEecccCCCC---cchh----hhhcccch--hccchhhcc-CCCCcchhheehhhh
Confidence 3799999999999988887654 455553321 3332 22234322 126787654 334679999998776
Q ss_pred CC---CCCChHHHHHHHHHhccCC
Q 030935 149 FY---DASGKICAFEILICSLFPI 169 (169)
Q Consensus 149 iy---~~~~~~~l~~~l~~~L~p~ 169 (169)
+= +.-.++.++--+-+.|+|+
T Consensus 437 fs~~~~rC~~~~illEmDRILRP~ 460 (506)
T PF03141_consen 437 FSLYKDRCEMEDILLEMDRILRPG 460 (506)
T ss_pred hhhhcccccHHHHHHHhHhhcCCC
Confidence 53 3356777888888888885
No 421
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=66.81 E-value=47 Score=25.33 Aligned_cols=79 Identities=11% Similarity=0.037 Sum_probs=42.9
Q ss_pred CCCCeEEEECCCCCHHHH---HHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC------CC--C
Q 030935 69 FSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS------IF--D 137 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l---~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~------~~--~ 137 (169)
+.+++||=.|+++|+-.- .+++.|++|++++.+. +.++.+...++..+.+..+...+..+.... .. -
T Consensus 9 l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~--~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 86 (255)
T PRK06113 9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINA--DAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKL 86 (255)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 468899999966554332 2344688999998774 355544443433333333344444432210 00 1
Q ss_pred CCCcEEEEcCcC
Q 030935 138 LNPNIILGADVF 149 (169)
Q Consensus 138 ~~fDlIi~sd~i 149 (169)
.++|+|+.+--+
T Consensus 87 ~~~d~li~~ag~ 98 (255)
T PRK06113 87 GKVDILVNNAGG 98 (255)
T ss_pred CCCCEEEECCCC
Confidence 367888865443
No 422
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=66.35 E-value=54 Score=24.72 Aligned_cols=42 Identities=21% Similarity=0.304 Sum_probs=29.7
Q ss_pred cCCCCCCeEEEECCCCCHHHHHHHH----hCCeEEEEcCCCcHHHHHHHH
Q 030935 66 RYRFSGANVVELGAGTSLPGLVAAK----VGSNVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 66 ~~~~~~~~vLElGcGtGl~~l~~a~----~ga~V~~~D~~~~~~~l~~~~ 111 (169)
...++|++|+=+|.| -+|..+++ .|++|+++|.++ +.++..+
T Consensus 23 ~~~l~gk~v~I~G~G--~vG~~~A~~L~~~G~~Vvv~D~~~--~~~~~~~ 68 (200)
T cd01075 23 TDSLEGKTVAVQGLG--KVGYKLAEHLLEEGAKLIVADINE--EAVARAA 68 (200)
T ss_pred CCCCCCCEEEEECCC--HHHHHHHHHHHHCCCEEEEEcCCH--HHHHHHH
Confidence 345689999999998 45555544 588999999984 3444443
No 423
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=66.28 E-value=46 Score=26.90 Aligned_cols=77 Identities=19% Similarity=0.043 Sum_probs=40.9
Q ss_pred CCCeEEEECCC-CC-HHHHHHHHhCC-eEEEEcCCCc------------HH-----HHHHHHHHHHHhCCcceEEEEEcC
Q 030935 70 SGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDSNR------------IE-----VLKNMRRVCEMNKLNCRVMGLTWG 129 (169)
Q Consensus 70 ~~~~vLElGcG-tG-l~~l~~a~~ga-~V~~~D~~~~------------~~-----~l~~~~~n~~~n~~~~~~~~l~~~ 129 (169)
...+||=+||| .| -++..++..|- +++..|.+.- ++ =.+.++++++..+..+++....-.
T Consensus 18 ~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~~ 97 (286)
T cd01491 18 QKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVSTGP 97 (286)
T ss_pred hcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 56789999887 22 22334455565 7888887641 00 112333444444445554433321
Q ss_pred CCCcCCCCCCCcEEEEcCc
Q 030935 130 FLDASIFDLNPNIILGADV 148 (169)
Q Consensus 130 ~~~~~~~~~~fDlIi~sd~ 148 (169)
..... -.+||+|++++.
T Consensus 98 -~~~~~-l~~fdvVV~~~~ 114 (286)
T cd01491 98 -LTTDE-LLKFQVVVLTDA 114 (286)
T ss_pred -CCHHH-HhcCCEEEEecC
Confidence 11111 138999998764
No 424
>PRK07774 short chain dehydrogenase; Provisional
Probab=66.26 E-value=55 Score=24.72 Aligned_cols=79 Identities=13% Similarity=0.115 Sum_probs=42.1
Q ss_pred CCCCeEEEECCCCCHHHHHHH----HhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCC------
Q 030935 69 FSGANVVELGAGTSLPGLVAA----KVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------ 136 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a----~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~------ 136 (169)
.+++++|=.| |+|.+|..++ +.|++|++++.++ .-.+.+...+...+........+..+... ...
T Consensus 4 ~~~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (250)
T PRK07774 4 FDDKVAIVTG-AAGGIGQAYAEALAREGASVVVADINA--EGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSA 80 (250)
T ss_pred cCCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 3677888888 4555666554 4588999999874 24444444343222222223333332211 000
Q ss_pred CCCCcEEEEcCcCC
Q 030935 137 DLNPNIILGADVFY 150 (169)
Q Consensus 137 ~~~fDlIi~sd~iy 150 (169)
..++|+||.+--++
T Consensus 81 ~~~id~vi~~ag~~ 94 (250)
T PRK07774 81 FGGIDYLVNNAAIY 94 (250)
T ss_pred hCCCCEEEECCCCc
Confidence 12689999766543
No 425
>PRK06125 short chain dehydrogenase; Provisional
Probab=66.25 E-value=55 Score=25.05 Aligned_cols=78 Identities=17% Similarity=0.200 Sum_probs=44.1
Q ss_pred CCCCeEEEECCCCCHHHHH----HHHhCCeEEEEcCCCcHHHHHHHHHHHHHh-CCcceEEEEEcCCCCc--CC--CCCC
Q 030935 69 FSGANVVELGAGTSLPGLV----AAKVGSNVTLTDDSNRIEVLKNMRRVCEMN-KLNCRVMGLTWGFLDA--SI--FDLN 139 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~----~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n-~~~~~~~~l~~~~~~~--~~--~~~~ 139 (169)
++++++|=.|++.| +|.. +++.|++|++++.++ +.++.+...+... +....+...+..+... .. .-.+
T Consensus 5 ~~~k~vlItG~~~g-iG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~ 81 (259)
T PRK06125 5 LAGKRVLITGASKG-IGAAAAEAFAAEGCHLHLVARDA--DALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGD 81 (259)
T ss_pred CCCCEEEEeCCCch-HHHHHHHHHHHcCCEEEEEeCCH--HHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCC
Confidence 46788999997655 4443 345688999999874 4555554444432 3333344444433211 00 0136
Q ss_pred CcEEEEcCcC
Q 030935 140 PNIILGADVF 149 (169)
Q Consensus 140 fDlIi~sd~i 149 (169)
.|+++.+--+
T Consensus 82 id~lv~~ag~ 91 (259)
T PRK06125 82 IDILVNNAGA 91 (259)
T ss_pred CCEEEECCCC
Confidence 8998876544
No 426
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=66.22 E-value=14 Score=31.39 Aligned_cols=35 Identities=26% Similarity=0.325 Sum_probs=25.5
Q ss_pred CCCCCeEEEECCC-CCHHHHHHHH-hCCeEEEEcCCC
Q 030935 68 RFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSN 102 (169)
Q Consensus 68 ~~~~~~vLElGcG-tGl~~l~~a~-~ga~V~~~D~~~ 102 (169)
...|++|+=+|+| .|......++ .|++|+++|.++
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 4689999999998 4443333333 578999999985
No 427
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=66.13 E-value=54 Score=24.73 Aligned_cols=80 Identities=11% Similarity=0.103 Sum_probs=42.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHH----hCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC--CC------
Q 030935 69 FSGANVVELGAGTSLPGLVAAK----VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS--IF------ 136 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~----~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~--~~------ 136 (169)
++++++|=.|+ +|.+|..+++ .|++|+++.... ++..+.....+...+.++.+...+..+.... ..
T Consensus 4 ~~~~~~lItG~-s~~iG~~la~~l~~~g~~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (247)
T PRK12935 4 LNGKVAIVTGG-AKGIGKAITVALAQEGAKVVINYNSS-KEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVNH 81 (247)
T ss_pred CCCCEEEEECC-CCHHHHHHHHHHHHcCCEEEEEcCCc-HHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 35788999994 6667766554 577887765432 2344433333333333444444444432110 00
Q ss_pred CCCCcEEEEcCcCC
Q 030935 137 DLNPNIILGADVFY 150 (169)
Q Consensus 137 ~~~fDlIi~sd~iy 150 (169)
-.+.|+|+.+--..
T Consensus 82 ~~~id~vi~~ag~~ 95 (247)
T PRK12935 82 FGKVDILVNNAGIT 95 (247)
T ss_pred cCCCCEEEECCCCC
Confidence 12578888665443
No 428
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=66.01 E-value=23 Score=27.33 Aligned_cols=42 Identities=19% Similarity=0.289 Sum_probs=28.4
Q ss_pred CCCCeEEEECCC-CCHHHHHHHH----hCCeEEEEcCCCcHHHHHHH
Q 030935 69 FSGANVVELGAG-TSLPGLVAAK----VGSNVTLTDDSNRIEVLKNM 110 (169)
Q Consensus 69 ~~~~~vLElGcG-tGl~~l~~a~----~ga~V~~~D~~~~~~~l~~~ 110 (169)
++++++|=.|+| ++.+|..+++ .|++|++++.+.+++.++.+
T Consensus 5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~ 51 (256)
T PRK07889 5 LEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERI 51 (256)
T ss_pred ccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHH
Confidence 467899999995 5566665544 58899999876422344433
No 429
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=65.80 E-value=7.6 Score=26.47 Aligned_cols=74 Identities=22% Similarity=0.220 Sum_probs=40.5
Q ss_pred CCCHHHHHHHH-hCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCC--c---CCCC-CCCcEEEEcCcCCCC
Q 030935 80 GTSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLD--A---SIFD-LNPNIILGADVFYDA 152 (169)
Q Consensus 80 GtGl~~l~~a~-~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~--~---~~~~-~~fDlIi~sd~iy~~ 152 (169)
|.|+.++.+|+ .|++|+++|.++ +-++.+++ .+.. ..++..+.. + ...+ ..+|+|| |++=
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~--~k~~~~~~----~Ga~---~~~~~~~~~~~~~i~~~~~~~~~d~vi--d~~g-- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSE--EKLELAKE----LGAD---HVIDYSDDDFVEQIRELTGGRGVDVVI--DCVG-- 67 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSH--HHHHHHHH----TTES---EEEETTTSSHHHHHHHHTTTSSEEEEE--ESSS--
T ss_pred ChHHHHHHHHHHcCCEEEEEECCH--HHHHHHHh----hccc---ccccccccccccccccccccccceEEE--EecC--
Confidence 45777777776 578999999984 34455443 3422 113333321 1 1112 3788887 3321
Q ss_pred CChHHHHHHHHHhccC
Q 030935 153 SGKICAFEILICSLFP 168 (169)
Q Consensus 153 ~~~~~l~~~l~~~L~p 168 (169)
.+..++.....|+|
T Consensus 68 --~~~~~~~~~~~l~~ 81 (130)
T PF00107_consen 68 --SGDTLQEAIKLLRP 81 (130)
T ss_dssp --SHHHHHHHHHHEEE
T ss_pred --cHHHHHHHHHHhcc
Confidence 24555555555554
No 430
>PLN02494 adenosylhomocysteinase
Probab=65.63 E-value=11 Score=32.60 Aligned_cols=51 Identities=14% Similarity=0.042 Sum_probs=32.1
Q ss_pred CcceeecchHHHHHHHHHhccCCCCCCeEEEECCC-CCHHHH-HHHHhCCeEEEEcCCC
Q 030935 46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSN 102 (169)
Q Consensus 46 ~~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcG-tGl~~l-~~a~~ga~V~~~D~~~ 102 (169)
++|..+|.+ ++......+.|++|+=+|+| .|.... .+...|++|+++|.++
T Consensus 235 GtgqS~~d~------i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp 287 (477)
T PLN02494 235 GCRHSLPDG------LMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDP 287 (477)
T ss_pred cccccHHHH------HHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 456667666 22222234689999999998 332222 2223578999999985
No 431
>PRK08589 short chain dehydrogenase; Validated
Probab=65.59 E-value=57 Score=25.33 Aligned_cols=77 Identities=14% Similarity=0.086 Sum_probs=42.8
Q ss_pred CCCCeEEEECCCCCHHHHH----HHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc------CCC--
Q 030935 69 FSGANVVELGAGTSLPGLV----AAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA------SIF-- 136 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~----~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~------~~~-- 136 (169)
++++++|=.|++.|+ |.. +++.|++|++++.++ -++.....++..+.++.+...+..+... ...
T Consensus 4 l~~k~vlItGas~gI-G~aia~~l~~~G~~vi~~~r~~---~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 79 (272)
T PRK08589 4 LENKVAVITGASTGI-GQASAIALAQEGAYVLAVDIAE---AVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQ 79 (272)
T ss_pred CCCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEeCcH---HHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHH
Confidence 467889988887664 333 445688999998872 3333333344334344444454443211 000
Q ss_pred CCCCcEEEEcCcC
Q 030935 137 DLNPNIILGADVF 149 (169)
Q Consensus 137 ~~~fDlIi~sd~i 149 (169)
-.+.|++|.+--+
T Consensus 80 ~g~id~li~~Ag~ 92 (272)
T PRK08589 80 FGRVDVLFNNAGV 92 (272)
T ss_pred cCCcCEEEECCCC
Confidence 1367988866543
No 432
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=65.54 E-value=42 Score=25.35 Aligned_cols=77 Identities=14% Similarity=0.082 Sum_probs=41.7
Q ss_pred CCCCeEEEECCCCCHHHHHH----HHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC------C--C
Q 030935 69 FSGANVVELGAGTSLPGLVA----AKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS------I--F 136 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~----a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~------~--~ 136 (169)
++++++|=.|++.| +|..+ ++.|++|++++.++ ...+...++..+....+...+..+...- . .
T Consensus 3 ~~~k~vlItGas~g-IG~~ia~~l~~~G~~vi~~~r~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (248)
T TIGR01832 3 LEGKVALVTGANTG-LGQGIAVGLAEAGADIVGAGRSE----PSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEE 77 (248)
T ss_pred CCCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCch----HHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 46889999998765 44443 44588999998763 2222333333333333344444332110 0 0
Q ss_pred CCCCcEEEEcCcCC
Q 030935 137 DLNPNIILGADVFY 150 (169)
Q Consensus 137 ~~~fDlIi~sd~iy 150 (169)
..++|+||.+--+.
T Consensus 78 ~~~~d~li~~ag~~ 91 (248)
T TIGR01832 78 FGHIDILVNNAGII 91 (248)
T ss_pred cCCCCEEEECCCCC
Confidence 13689998765443
No 433
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=65.51 E-value=53 Score=24.72 Aligned_cols=77 Identities=17% Similarity=0.106 Sum_probs=40.9
Q ss_pred CCCCeEEEECCCCCHHHHHH----HHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc------CCC--
Q 030935 69 FSGANVVELGAGTSLPGLVA----AKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA------SIF-- 136 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~----a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~------~~~-- 136 (169)
++++++|=.|++.| +|..+ ++.|++|++++.++ .-++.+...+...+.+......+..+... ...
T Consensus 3 ~~~~~~lItG~~g~-iG~~~a~~l~~~G~~vi~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (253)
T PRK08217 3 LKDKVIVITGGAQG-LGRAMAEYLAQKGAKLALIDLNQ--EKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAED 79 (253)
T ss_pred CCCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46788998887544 44444 34578999999884 34444444444333333333333222110 000
Q ss_pred CCCCcEEEEcCc
Q 030935 137 DLNPNIILGADV 148 (169)
Q Consensus 137 ~~~fDlIi~sd~ 148 (169)
-.++|+||.+--
T Consensus 80 ~~~id~vi~~ag 91 (253)
T PRK08217 80 FGQLNGLINNAG 91 (253)
T ss_pred cCCCCEEEECCC
Confidence 136799886643
No 434
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=65.46 E-value=29 Score=29.66 Aligned_cols=75 Identities=19% Similarity=0.162 Sum_probs=42.3
Q ss_pred CCCCeEEEECCCCCHHHH--HHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEc
Q 030935 69 FSGANVVELGAGTSLPGL--VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l--~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~s 146 (169)
..+++|+=+|.|....++ .+.+.|++|++.|.++.+. .......++..++.+ . .+....... ..+|+|+.+
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~-~~~~~~~l~~~gi~~--~---~~~~~~~~~-~~~dlVV~S 84 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEE-LGEVSNELKELGVKL--V---LGENYLDKL-DGFDVIFKT 84 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCcc-chHHHHHHHhCCCEE--E---eCCCChHHh-ccCCEEEEC
Confidence 357889999998543354 6667899999999875311 111112244445432 1 122111111 368999988
Q ss_pred CcCC
Q 030935 147 DVFY 150 (169)
Q Consensus 147 d~iy 150 (169)
.-+-
T Consensus 85 pgi~ 88 (458)
T PRK01710 85 PSMR 88 (458)
T ss_pred CCCC
Confidence 7553
No 435
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=65.38 E-value=9.8 Score=29.79 Aligned_cols=22 Identities=27% Similarity=0.249 Sum_probs=16.2
Q ss_pred HHHhCCeEEEEcCCCcHHHHHH
Q 030935 88 AAKVGSNVTLTDDSNRIEVLKN 109 (169)
Q Consensus 88 ~a~~ga~V~~~D~~~~~~~l~~ 109 (169)
++++|.+|..+|-+++..+.+.
T Consensus 26 la~~G~~V~lIDaDpn~pl~~W 47 (231)
T PF07015_consen 26 LAARGARVALIDADPNQPLAKW 47 (231)
T ss_pred HHHCCCeEEEEeCCCCCcHHHH
Confidence 3456889999999987445544
No 436
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=65.20 E-value=46 Score=25.16 Aligned_cols=75 Identities=16% Similarity=0.047 Sum_probs=40.2
Q ss_pred CeEEEECCCCCHHHHHHHH----hCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc------CCC--CCC
Q 030935 72 ANVVELGAGTSLPGLVAAK----VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA------SIF--DLN 139 (169)
Q Consensus 72 ~~vLElGcGtGl~~l~~a~----~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~------~~~--~~~ 139 (169)
+++|=.| |+|.+|..+++ .|.+|++++.++ +-.+.+...+...+....+...++.+... ... -.+
T Consensus 2 ~~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (255)
T TIGR01963 2 KTALVTG-AASGIGLAIALALAAAGANVVVNDLGE--AGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGG 78 (255)
T ss_pred CEEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 4677777 45555655543 478999999874 34444444343333334444444444220 000 125
Q ss_pred CcEEEEcCcC
Q 030935 140 PNIILGADVF 149 (169)
Q Consensus 140 fDlIi~sd~i 149 (169)
.|+|+.+--.
T Consensus 79 ~d~vi~~a~~ 88 (255)
T TIGR01963 79 LDILVNNAGI 88 (255)
T ss_pred CCEEEECCCC
Confidence 7888866544
No 437
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=65.13 E-value=40 Score=23.59 Aligned_cols=29 Identities=31% Similarity=0.363 Sum_probs=18.8
Q ss_pred eEEEECCC-CC-HHHHHHHHhCC-eEEEEcCC
Q 030935 73 NVVELGAG-TS-LPGLVAAKVGS-NVTLTDDS 101 (169)
Q Consensus 73 ~vLElGcG-tG-l~~l~~a~~ga-~V~~~D~~ 101 (169)
+|+=+||| .| -+...+++.|. +++.+|.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 46678886 33 23345556676 79999877
No 438
>PRK07791 short chain dehydrogenase; Provisional
Probab=65.05 E-value=45 Score=26.27 Aligned_cols=82 Identities=13% Similarity=0.053 Sum_probs=44.4
Q ss_pred CCCCeEEEECCCCCHHHH---HHHHhCCeEEEEcCCC-------cHHHHHHHHHHHHHhCCcceEEEEEcCCCCc-----
Q 030935 69 FSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSN-------RIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA----- 133 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l---~~a~~ga~V~~~D~~~-------~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~----- 133 (169)
++++++|=.|++.|+-.. .+++.|++|++++.+. ..+-++.+.+.+...+..+.+...+..+...
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~ 83 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLV 83 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHH
Confidence 468899999988775432 3455688999988753 0023333333343334333333344433211
Q ss_pred -CCC--CCCCcEEEEcCcCC
Q 030935 134 -SIF--DLNPNIILGADVFY 150 (169)
Q Consensus 134 -~~~--~~~fDlIi~sd~iy 150 (169)
... -.+.|++|.+--+.
T Consensus 84 ~~~~~~~g~id~lv~nAG~~ 103 (286)
T PRK07791 84 DAAVETFGGLDVLVNNAGIL 103 (286)
T ss_pred HHHHHhcCCCCEEEECCCCC
Confidence 000 13679988765443
No 439
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=64.81 E-value=22 Score=26.31 Aligned_cols=90 Identities=16% Similarity=0.099 Sum_probs=46.1
Q ss_pred CeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCc----ceEEEEEcCCCC--c-----CCCCCCC
Q 030935 72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN----CRVMGLTWGFLD--A-----SIFDLNP 140 (169)
Q Consensus 72 ~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~----~~~~~l~~~~~~--~-----~~~~~~f 140 (169)
..|+.||||-=--+.-+......+...|++- |++++.-++.+...+.. .++...+..+.. . .+.....
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~p 158 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDRP 158 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTSE
T ss_pred cEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCCC
Confidence 3899999998777777666432444444443 56777666555544221 233333332210 0 1123456
Q ss_pred cEEEEcCcCCCC--CChHHHHHHH
Q 030935 141 NIILGADVFYDA--SGKICAFEIL 162 (169)
Q Consensus 141 DlIi~sd~iy~~--~~~~~l~~~l 162 (169)
-++++-.++++. +....+++.|
T Consensus 159 tl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 159 TLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp EEEEEESSGGGS-HHHHHHHHHHH
T ss_pred eEEEEcchhhcCCHHHHHHHHHHh
Confidence 678877777655 4455565554
No 440
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=64.76 E-value=57 Score=24.86 Aligned_cols=76 Identities=18% Similarity=0.196 Sum_probs=41.2
Q ss_pred CCCCeEEEECCCCCHHH---HHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCC------C
Q 030935 69 FSGANVVELGAGTSLPG---LVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------D 137 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~---l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~------~ 137 (169)
++++++|=.|++.|+-. ..+++.|++|++++.++ ........+...+....+...+..+... ... -
T Consensus 6 ~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~---~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (260)
T PRK12823 6 FAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSE---LVHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAF 82 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCch---HHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence 46788999997655432 23345688999999874 2333333343334344344445443211 000 1
Q ss_pred CCCcEEEEcC
Q 030935 138 LNPNIILGAD 147 (169)
Q Consensus 138 ~~fDlIi~sd 147 (169)
.++|+++.+-
T Consensus 83 ~~id~lv~nA 92 (260)
T PRK12823 83 GRIDVLINNV 92 (260)
T ss_pred CCCeEEEECC
Confidence 3688888543
No 441
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=64.73 E-value=53 Score=26.41 Aligned_cols=144 Identities=20% Similarity=0.157 Sum_probs=73.0
Q ss_pred CcceEEEEEeccCCCCCceE-E-EEeccccCCcceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHH----HH
Q 030935 17 HMTTVSQHYFVDESDKPSFS-I-AIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVA----AK 90 (169)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~-i-~i~~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~----a~ 90 (169)
.|++..++||++...+.-++ | .+.|- |-.++ -+.+|..+..+-.....+...+|||+|+--=+..+ +.
T Consensus 29 tpktlpP~~FYD~~GS~LFe~I~~LPEY----YpTRt--EaaIl~~~a~Eia~~~g~~~lveLGsGns~Ktr~Llda~~~ 102 (321)
T COG4301 29 TPKTLPPKYFYDDRGSELFEQITRLPEY----YPTRT--EAAILQARAAEIASITGACTLVELGSGNSTKTRILLDALAH 102 (321)
T ss_pred CCcCCCCceeecccHHHHHHHHhccccc----cCchh--HHHHHHHHHHHHHHhhCcceEEEecCCccHHHHHHHHHhhh
Confidence 47777888887643332111 1 11111 11111 23334333333323334678999999987555444 33
Q ss_pred hCC--eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc---CCCCC--CCcEEEEcCcC-CCCCChHHHHHHH
Q 030935 91 VGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA---SIFDL--NPNIILGADVF-YDASGKICAFEIL 162 (169)
Q Consensus 91 ~ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~---~~~~~--~fDlIi~sd~i-y~~~~~~~l~~~l 162 (169)
.|. +.+.+|++ ...++...+.+...-....+. -..++... ..... +.=+-++|-+= +.+..-..++..+
T Consensus 103 ~~~~~ryvpiDv~--a~iL~~ta~ai~~~y~~l~v~-~l~~~~~~~La~~~~~~~Rl~~flGStlGN~tp~e~~~Fl~~l 179 (321)
T COG4301 103 RGSLLRYVPIDVS--ASILRATATAILREYPGLEVN-ALCGDYELALAELPRGGRRLFVFLGSTLGNLTPGECAVFLTQL 179 (321)
T ss_pred cCCcceeeeeccc--HHHHHHHHHHHHHhCCCCeEe-ehhhhHHHHHhcccCCCeEEEEEecccccCCChHHHHHHHHHH
Confidence 453 89999999 457765444444332322222 22233221 11111 21122222221 3556667789999
Q ss_pred HHhccCC
Q 030935 163 ICSLFPI 169 (169)
Q Consensus 163 ~~~L~p~ 169 (169)
...|+||
T Consensus 180 ~~a~~pG 186 (321)
T COG4301 180 RGALRPG 186 (321)
T ss_pred HhcCCCc
Confidence 9999986
No 442
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=64.62 E-value=14 Score=24.48 Aligned_cols=40 Identities=13% Similarity=0.295 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcC
Q 030935 106 VLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGAD 147 (169)
Q Consensus 106 ~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd 147 (169)
+++.+++-++.++++.++.......... ....+|+|+.+.
T Consensus 15 ~~~ki~~~~~~~~~~~~v~~~~~~~~~~--~~~~~Diil~~P 54 (96)
T cd05564 15 LVKKMKKAAEKRGIDAEIEAVPESELEE--YIDDADVVLLGP 54 (96)
T ss_pred HHHHHHHHHHHCCCceEEEEecHHHHHH--hcCCCCEEEECh
Confidence 4445566677777776655444433221 124678888763
No 443
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=64.61 E-value=72 Score=25.52 Aligned_cols=35 Identities=29% Similarity=0.286 Sum_probs=25.0
Q ss_pred CCCCCeEEEECCCCCHHH--HHHHHhCC-eEEEEcCCC
Q 030935 68 RFSGANVVELGAGTSLPG--LVAAKVGS-NVTLTDDSN 102 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~--l~~a~~ga-~V~~~D~~~ 102 (169)
..++++|+=||||.-.-+ ..+++.|. +|+.+|.+.
T Consensus 124 ~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 124 DASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 456789999999943333 34455676 799999984
No 444
>PRK06153 hypothetical protein; Provisional
Probab=64.51 E-value=9.1 Score=32.34 Aligned_cols=33 Identities=24% Similarity=0.323 Sum_probs=26.6
Q ss_pred CCCCeEEEECCC-CC-HHHHHHHHhCC-eEEEEcCC
Q 030935 69 FSGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDS 101 (169)
Q Consensus 69 ~~~~~vLElGcG-tG-l~~l~~a~~ga-~V~~~D~~ 101 (169)
+++.+|+=+||| +| .+...+|+.|. +++++|.+
T Consensus 174 L~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 174 LEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred HhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 366799999999 66 45668888886 89999987
No 445
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=64.41 E-value=32 Score=21.43 Aligned_cols=41 Identities=24% Similarity=0.381 Sum_probs=26.6
Q ss_pred CCCHHHHHHH----HhCCeEEEEcCCCc------HHHHHHHHHHHHHhCCc
Q 030935 80 GTSLPGLVAA----KVGSNVTLTDDSNR------IEVLKNMRRVCEMNKLN 120 (169)
Q Consensus 80 GtGl~~l~~a----~~ga~V~~~D~~~~------~~~l~~~~~n~~~n~~~ 120 (169)
|.|.+|+.+| +.|.+|+.++.++. +++.+.+++.++..+++
T Consensus 6 GgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~ 56 (80)
T PF00070_consen 6 GGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVE 56 (80)
T ss_dssp SSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEE
T ss_pred CcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCE
Confidence 5566666554 45789999998874 23445666666666654
No 446
>PRK08303 short chain dehydrogenase; Provisional
Probab=64.34 E-value=44 Score=26.80 Aligned_cols=34 Identities=21% Similarity=0.226 Sum_probs=24.2
Q ss_pred CCCCCeEEEECCCCCHHH---HHHHHhCCeEEEEcCC
Q 030935 68 RFSGANVVELGAGTSLPG---LVAAKVGSNVTLTDDS 101 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~---l~~a~~ga~V~~~D~~ 101 (169)
.++++.+|=.|++.|+-. ..+++.|++|++++.+
T Consensus 5 ~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~ 41 (305)
T PRK08303 5 PLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRS 41 (305)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecc
Confidence 357889999998776432 2334468899998876
No 447
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=64.27 E-value=19 Score=27.32 Aligned_cols=33 Identities=21% Similarity=0.367 Sum_probs=22.8
Q ss_pred CCCCeEEEECCCC-CHH-HHHHHHhCCeEEEEcCC
Q 030935 69 FSGANVVELGAGT-SLP-GLVAAKVGSNVTLTDDS 101 (169)
Q Consensus 69 ~~~~~vLElGcGt-Gl~-~l~~a~~ga~V~~~D~~ 101 (169)
++|++||=+|+|. |.- .-.+.+.|++|+++.-.
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 5789999999873 322 23455678888888654
No 448
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=64.23 E-value=38 Score=26.27 Aligned_cols=77 Identities=16% Similarity=0.102 Sum_probs=41.6
Q ss_pred CCCCeEEEECCCCCHHH---HHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCC------C
Q 030935 69 FSGANVVELGAGTSLPG---LVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------D 137 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~---l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~------~ 137 (169)
.+++++|=.|++.|+-. ..+++.|++|++++.++ +..+.+.+.+...+.+..+...+..+... ... -
T Consensus 8 ~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 85 (278)
T PRK08277 8 LKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQ--EKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDF 85 (278)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 46788998888765422 23345688999999874 34444444444333333333333332211 000 1
Q ss_pred CCCcEEEEcC
Q 030935 138 LNPNIILGAD 147 (169)
Q Consensus 138 ~~fDlIi~sd 147 (169)
.++|++|.+-
T Consensus 86 g~id~li~~a 95 (278)
T PRK08277 86 GPCDILINGA 95 (278)
T ss_pred CCCCEEEECC
Confidence 3689988654
No 449
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=64.13 E-value=19 Score=32.29 Aligned_cols=33 Identities=33% Similarity=0.324 Sum_probs=25.2
Q ss_pred CCCeEEEECCCCCHHH--HHHHHhCCeEEEEcCCC
Q 030935 70 SGANVVELGAGTSLPG--LVAAKVGSNVTLTDDSN 102 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~--l~~a~~ga~V~~~D~~~ 102 (169)
.+++|+=+|+|.+.++ ..+++.|.+|++.|..+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~ 360 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHP 360 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 5789999999966444 35566788999998753
No 450
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=63.85 E-value=26 Score=28.69 Aligned_cols=36 Identities=25% Similarity=0.380 Sum_probs=23.0
Q ss_pred CCCCCCeEEEECCC-CCHHHHHHHH-hCC-eEEEEcCCC
Q 030935 67 YRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSN 102 (169)
Q Consensus 67 ~~~~~~~vLElGcG-tGl~~l~~a~-~ga-~V~~~D~~~ 102 (169)
...+|.+||=.|+| .|...+.+|+ .|+ +|++++.++
T Consensus 181 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~ 219 (365)
T cd08277 181 KVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINE 219 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence 34578888888864 3333333344 577 799999874
No 451
>PRK07062 short chain dehydrogenase; Provisional
Probab=63.78 E-value=63 Score=24.76 Aligned_cols=79 Identities=9% Similarity=-0.017 Sum_probs=43.4
Q ss_pred CCCCeEEEECCCCCHHH---HHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhC--CcceEEEEEcCCCCc------CC--
Q 030935 69 FSGANVVELGAGTSLPG---LVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNK--LNCRVMGLTWGFLDA------SI-- 135 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~---l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~--~~~~~~~l~~~~~~~------~~-- 135 (169)
++++.+|=.|++.|+-. ..+++.|++|++++.++ +-++.+.+.+.... ..+.....+..+... ..
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 83 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDE--ERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEA 83 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCH--HHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 46889999997766433 23345688999999884 34444444443321 223333444443211 00
Q ss_pred CCCCCcEEEEcCcC
Q 030935 136 FDLNPNIILGADVF 149 (169)
Q Consensus 136 ~~~~fDlIi~sd~i 149 (169)
.-.++|++|.+--+
T Consensus 84 ~~g~id~li~~Ag~ 97 (265)
T PRK07062 84 RFGGVDMLVNNAGQ 97 (265)
T ss_pred hcCCCCEEEECCCC
Confidence 01367988865543
No 452
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=63.47 E-value=60 Score=25.33 Aligned_cols=30 Identities=23% Similarity=0.207 Sum_probs=17.9
Q ss_pred eEEEECCC-CC-HHHHHHHHhCC-eEEEEcCCC
Q 030935 73 NVVELGAG-TS-LPGLVAAKVGS-NVTLTDDSN 102 (169)
Q Consensus 73 ~vLElGcG-tG-l~~l~~a~~ga-~V~~~D~~~ 102 (169)
+||=+||| .| -+...++..|. +++.+|.+.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~ 33 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDT 33 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 46677776 23 22234455565 788888774
No 453
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=63.05 E-value=38 Score=27.03 Aligned_cols=40 Identities=28% Similarity=0.387 Sum_probs=25.2
Q ss_pred CCCCeEEEECCCC-CHHHHHHHH-hCC-eEEEEcCCCcHHHHHHH
Q 030935 69 FSGANVVELGAGT-SLPGLVAAK-VGS-NVTLTDDSNRIEVLKNM 110 (169)
Q Consensus 69 ~~~~~vLElGcGt-Gl~~l~~a~-~ga-~V~~~D~~~~~~~l~~~ 110 (169)
.++.+||-.|||. |...+.+++ .|. +|++++.++ +..+.+
T Consensus 164 ~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~--~~~~~~ 206 (339)
T cd08232 164 LAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLAD--APLAVA 206 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCH--HHHHHH
Confidence 3788888888752 334443444 577 799998874 344433
No 454
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=62.87 E-value=26 Score=23.13 Aligned_cols=9 Identities=11% Similarity=0.386 Sum_probs=6.2
Q ss_pred ECCCCCHHH
Q 030935 77 LGAGTSLPG 85 (169)
Q Consensus 77 lGcGtGl~~ 85 (169)
+-||+|..+
T Consensus 7 vvCgsG~~T 15 (94)
T PRK10310 7 VACGGAVAT 15 (94)
T ss_pred EECCCchhH
Confidence 568888743
No 455
>PRK06114 short chain dehydrogenase; Provisional
Probab=62.65 E-value=55 Score=24.96 Aligned_cols=80 Identities=16% Similarity=0.072 Sum_probs=43.4
Q ss_pred CCCCeEEEECCCCCHHHHHHH----HhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc------CCC--
Q 030935 69 FSGANVVELGAGTSLPGLVAA----KVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA------SIF-- 136 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a----~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~------~~~-- 136 (169)
++++++|=.|++.| +|..++ +.|++|++++.+.. ..++.+.+.+...+........+..+... ...
T Consensus 6 ~~~k~~lVtG~s~g-IG~~ia~~l~~~G~~v~~~~r~~~-~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~ 83 (254)
T PRK06114 6 LDGQVAFVTGAGSG-IGQRIAIGLAQAGADVALFDLRTD-DGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEAE 83 (254)
T ss_pred CCCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCcc-hHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46788998886554 555444 35889999988642 23344444444333333333344433211 000
Q ss_pred CCCCcEEEEcCcCC
Q 030935 137 DLNPNIILGADVFY 150 (169)
Q Consensus 137 ~~~fDlIi~sd~iy 150 (169)
-.+.|++|.+--+.
T Consensus 84 ~g~id~li~~ag~~ 97 (254)
T PRK06114 84 LGALTLAVNAAGIA 97 (254)
T ss_pred cCCCCEEEECCCCC
Confidence 13679888766554
No 456
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=62.57 E-value=65 Score=26.38 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=18.3
Q ss_pred eEEEECCC-CC-HHHHHHHHhCC-eEEEEcCCC
Q 030935 73 NVVELGAG-TS-LPGLVAAKVGS-NVTLTDDSN 102 (169)
Q Consensus 73 ~vLElGcG-tG-l~~l~~a~~ga-~V~~~D~~~ 102 (169)
+||=+||| .| -+...++..|. +++.+|.+.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~ 33 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDT 33 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCC
Confidence 46777876 22 22234455675 799999764
No 457
>PRK06128 oxidoreductase; Provisional
Probab=62.52 E-value=59 Score=25.72 Aligned_cols=80 Identities=10% Similarity=0.057 Sum_probs=41.3
Q ss_pred CCCCeEEEECCCCCHHHHHH----HHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCC------
Q 030935 69 FSGANVVELGAGTSLPGLVA----AKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------ 136 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~----a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~------ 136 (169)
++++++|=.|+..| +|..+ ++.|++|+++..+....-.+...+.++..+.+..+...+..+... ...
T Consensus 53 l~~k~vlITGas~g-IG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 131 (300)
T PRK06128 53 LQGRKALITGADSG-IGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKE 131 (300)
T ss_pred cCCCEEEEecCCCc-HHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHH
Confidence 46789999996555 44433 446889988876532222333333343334333333333332111 000
Q ss_pred CCCCcEEEEcCcC
Q 030935 137 DLNPNIILGADVF 149 (169)
Q Consensus 137 ~~~fDlIi~sd~i 149 (169)
-.+.|++|.+--+
T Consensus 132 ~g~iD~lV~nAg~ 144 (300)
T PRK06128 132 LGGLDILVNIAGK 144 (300)
T ss_pred hCCCCEEEECCcc
Confidence 1268998866543
No 458
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=62.49 E-value=41 Score=25.94 Aligned_cols=37 Identities=27% Similarity=0.246 Sum_probs=23.6
Q ss_pred cCCCCCCeEEEECCCC-CHHHHHHHH-hCCe-EEEEcCCC
Q 030935 66 RYRFSGANVVELGAGT-SLPGLVAAK-VGSN-VTLTDDSN 102 (169)
Q Consensus 66 ~~~~~~~~vLElGcGt-Gl~~l~~a~-~ga~-V~~~D~~~ 102 (169)
....++.++|=.|+|. |...+.+|+ +|.+ |++++.++
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~ 132 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDA 132 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCH
Confidence 3445678888887652 333344444 4777 99999874
No 459
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=61.73 E-value=29 Score=29.18 Aligned_cols=33 Identities=24% Similarity=0.277 Sum_probs=24.1
Q ss_pred CCCeEEEECCC-CC-HHHHHHHHhCC-eEEEEcCCC
Q 030935 70 SGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDSN 102 (169)
Q Consensus 70 ~~~~vLElGcG-tG-l~~l~~a~~ga-~V~~~D~~~ 102 (169)
++.+||=+||| .| -+...++..|. +++.+|.+.
T Consensus 41 ~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ 76 (392)
T PRK07878 41 KNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDV 76 (392)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 56799999999 23 34456667776 799998764
No 460
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=61.37 E-value=48 Score=25.33 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=23.6
Q ss_pred CCCCeEEEECCCCCHHHHHH----HHhCCeEEEEcCCC
Q 030935 69 FSGANVVELGAGTSLPGLVA----AKVGSNVTLTDDSN 102 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~----a~~ga~V~~~D~~~ 102 (169)
++++.+|=.|+..| +|..+ ++.|++|++++.+.
T Consensus 8 l~~k~~lItG~~~g-IG~a~a~~l~~~G~~vv~~~~~~ 44 (253)
T PRK08993 8 LEGKVAVVTGCDTG-LGQGMALGLAEAGCDIVGINIVE 44 (253)
T ss_pred CCCCEEEEECCCch-HHHHHHHHHHHCCCEEEEecCcc
Confidence 46789999997655 44433 44688999998764
No 461
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=61.35 E-value=30 Score=28.18 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=26.2
Q ss_pred CCCCCCeEEEECCC-CCHHHHHHHH-hCC-eEEEEcCCCcHHHHHHH
Q 030935 67 YRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNM 110 (169)
Q Consensus 67 ~~~~~~~vLElGcG-tGl~~l~~a~-~ga-~V~~~D~~~~~~~l~~~ 110 (169)
...++.+||=.||| .|...+.+|+ .|+ +|+++|.++ +-.+.+
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~--~~~~~~ 217 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDD--RKLEWA 217 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH--HHHHHH
Confidence 34568899988864 2334444444 577 599999874 344444
No 462
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=61.34 E-value=75 Score=24.67 Aligned_cols=61 Identities=16% Similarity=0.170 Sum_probs=34.1
Q ss_pred HHHHHHhccCCCCCCeEEEECCCCC----HHHHHHHH--hCCeEEEEcCCCcHHHHHHHHHHHHHhCCc
Q 030935 58 LAEYVWQQRYRFSGANVVELGAGTS----LPGLVAAK--VGSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (169)
Q Consensus 58 La~~l~~~~~~~~~~~vLElGcGtG----l~~l~~a~--~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~ 120 (169)
.++|+....--...+.++|..|+.| .+++.+|. -|.+++++--++ +-+...++.+...++.
T Consensus 29 ~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~--~~~~~~~~~l~~~~~~ 95 (218)
T PF07279_consen 29 VAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDE--QSLSEYKKALGEAGLS 95 (218)
T ss_pred HHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCCh--hhHHHHHHHHhhcccc
Confidence 3455544433334568999977644 23443333 256877777664 3455555556555554
No 463
>PRK09072 short chain dehydrogenase; Provisional
Probab=61.33 E-value=62 Score=24.78 Aligned_cols=77 Identities=13% Similarity=0.063 Sum_probs=40.9
Q ss_pred CCCeEEEECCCCCHHH---HHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCC-----CCC
Q 030935 70 SGANVVELGAGTSLPG---LVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF-----DLN 139 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~---l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~-----~~~ 139 (169)
+++++|=.|++.|+-. ..+++.|++|++++.++ +-++.....+ ..+....+...+..+... ... ..+
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~~-~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 80 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNA--EKLEALAARL-PYPGRHRWVVADLTSEAGREAVLARAREMGG 80 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHH-hcCCceEEEEccCCCHHHHHHHHHHHHhcCC
Confidence 5678888887765432 23455688999999874 3444443333 122233333334333211 000 136
Q ss_pred CcEEEEcCcC
Q 030935 140 PNIILGADVF 149 (169)
Q Consensus 140 fDlIi~sd~i 149 (169)
+|+|+.+--.
T Consensus 81 id~lv~~ag~ 90 (263)
T PRK09072 81 INVLINNAGV 90 (263)
T ss_pred CCEEEECCCC
Confidence 7888876433
No 464
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=61.30 E-value=44 Score=25.32 Aligned_cols=45 Identities=24% Similarity=0.228 Sum_probs=29.4
Q ss_pred CCCCCeEEEECCCCCHHHHHHH----HhCCeEEEEcCCCcHHHHHHHHHHHH
Q 030935 68 RFSGANVVELGAGTSLPGLVAA----KVGSNVTLTDDSNRIEVLKNMRRVCE 115 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a----~~ga~V~~~D~~~~~~~l~~~~~n~~ 115 (169)
.++++++|=.|+ +|.+|..++ +.|++|++++.+. +-++.....++
T Consensus 9 ~~~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~--~~~~~~~~~l~ 57 (247)
T PRK08945 9 LLKDRIILVTGA-GDGIGREAALTYARHGATVILLGRTE--EKLEAVYDEIE 57 (247)
T ss_pred ccCCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCH--HHHHHHHHHHH
Confidence 457889999995 566665444 3578999999884 34444444343
No 465
>PRK05650 short chain dehydrogenase; Provisional
Probab=60.79 E-value=61 Score=25.00 Aligned_cols=74 Identities=14% Similarity=0.001 Sum_probs=39.0
Q ss_pred eEEEECCCCCHHHHHH----HHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCC------CCCC
Q 030935 73 NVVELGAGTSLPGLVA----AKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------DLNP 140 (169)
Q Consensus 73 ~vLElGcGtGl~~l~~----a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~------~~~f 140 (169)
+||=.|+.. .+|..+ ++.|++|++++.+. +-++.+...++..+.+..+...+..+... ... -.++
T Consensus 2 ~vlVtGasg-gIG~~la~~l~~~g~~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~i 78 (270)
T PRK05650 2 RVMITGAAS-GLGRAIALRWAREGWRLALADVNE--EGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGI 78 (270)
T ss_pred EEEEecCCC-hHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 567667644 444444 44588999999874 34444444444444444444444433211 000 1368
Q ss_pred cEEEEcCcC
Q 030935 141 NIILGADVF 149 (169)
Q Consensus 141 DlIi~sd~i 149 (169)
|++|.+--+
T Consensus 79 d~lI~~ag~ 87 (270)
T PRK05650 79 DVIVNNAGV 87 (270)
T ss_pred CEEEECCCC
Confidence 988866543
No 466
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=60.35 E-value=40 Score=28.17 Aligned_cols=33 Identities=33% Similarity=0.446 Sum_probs=24.2
Q ss_pred CCCCeEEEECCC-CC-HHHHHHHHhCC-eEEEEcCC
Q 030935 69 FSGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDS 101 (169)
Q Consensus 69 ~~~~~vLElGcG-tG-l~~l~~a~~ga-~V~~~D~~ 101 (169)
+++.+||=+||| .| .+...++..|. +++.+|.+
T Consensus 39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 467799999999 34 33446666775 89999887
No 467
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=60.26 E-value=49 Score=26.27 Aligned_cols=51 Identities=24% Similarity=0.290 Sum_probs=37.8
Q ss_pred CCCCCCeEEEECCCCCHH---HHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCC
Q 030935 67 YRFSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL 119 (169)
Q Consensus 67 ~~~~~~~vLElGcGtGl~---~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~ 119 (169)
..+.++.+|-=|...|+- ...+++.|++|+.++.++ +.++.++..+...+.
T Consensus 4 ~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~--~~~~~~~~~~~~~~~ 57 (270)
T KOG0725|consen 4 GRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSE--ERLEETAQELGGLGY 57 (270)
T ss_pred ccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCC
Confidence 356889999999998854 457788899999999994 466666555544433
No 468
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=60.07 E-value=32 Score=28.50 Aligned_cols=33 Identities=27% Similarity=0.281 Sum_probs=21.9
Q ss_pred CCCeEEEECCC-CCHHHHHHHH-hCCeEEEEcCCC
Q 030935 70 SGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSN 102 (169)
Q Consensus 70 ~~~~vLElGcG-tGl~~l~~a~-~ga~V~~~D~~~ 102 (169)
++.+||=.|+| .|...+.+|+ +|++|++++.++
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~ 212 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSS 212 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCCh
Confidence 57788888875 3334444444 588999988764
No 469
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=60.01 E-value=47 Score=27.07 Aligned_cols=36 Identities=22% Similarity=0.025 Sum_probs=26.3
Q ss_pred CCCCCCeEEEECCC--CCHHHHHHHH-hCCeEEEEcCCC
Q 030935 67 YRFSGANVVELGAG--TSLPGLVAAK-VGSNVTLTDDSN 102 (169)
Q Consensus 67 ~~~~~~~vLElGcG--tGl~~l~~a~-~ga~V~~~D~~~ 102 (169)
...+|.+||=.|++ .|...+.+|+ +|++|++++.++
T Consensus 155 ~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~ 193 (348)
T PLN03154 155 SPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSS 193 (348)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 34578899999983 5666665665 588999998873
No 470
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=59.99 E-value=23 Score=25.50 Aligned_cols=50 Identities=24% Similarity=0.084 Sum_probs=29.5
Q ss_pred eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCC--CCcCCCCCCCcEEEE
Q 030935 94 NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGF--LDASIFDLNPNIILG 145 (169)
Q Consensus 94 ~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~--~~~~~~~~~fDlIi~ 145 (169)
+|.+.|+. +++++++++.++.++...++.-+.-+. +.+...+.++|+++-
T Consensus 1 kVyaFDIQ--~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iF 52 (140)
T PF06962_consen 1 KVYAFDIQ--EEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIF 52 (140)
T ss_dssp EEEEEES---HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEE
T ss_pred CEEEEECH--HHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEE
Confidence 68999999 569999999999988765444222222 222222237888874
No 471
>PRK08628 short chain dehydrogenase; Provisional
Probab=59.89 E-value=63 Score=24.59 Aligned_cols=77 Identities=8% Similarity=-0.013 Sum_probs=41.4
Q ss_pred CCCCeEEEECCCCCHHHHHH----HHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCCC-----
Q 030935 69 FSGANVVELGAGTSLPGLVA----AKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIFD----- 137 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~----a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~~----- 137 (169)
++++++|=.|++.| +|..+ ++.|++|++++.++. ..+ ....+...+.+..+...+..+... ....
T Consensus 5 l~~~~ilItGasgg-iG~~la~~l~~~G~~v~~~~r~~~--~~~-~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (258)
T PRK08628 5 LKDKVVIVTGGASG-IGAAISLRLAEEGAIPVIFGRSAP--DDE-FAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAK 80 (258)
T ss_pred cCCCEEEEeCCCCh-HHHHHHHHHHHcCCcEEEEcCChh--hHH-HHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHh
Confidence 56788888887554 44444 446888988888752 332 223333334344444444443211 0011
Q ss_pred -CCCcEEEEcCcC
Q 030935 138 -LNPNIILGADVF 149 (169)
Q Consensus 138 -~~fDlIi~sd~i 149 (169)
.++|+||.+--.
T Consensus 81 ~~~id~vi~~ag~ 93 (258)
T PRK08628 81 FGRIDGLVNNAGV 93 (258)
T ss_pred cCCCCEEEECCcc
Confidence 267888866543
No 472
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=59.79 E-value=34 Score=22.05 Aligned_cols=43 Identities=28% Similarity=0.329 Sum_probs=21.9
Q ss_pred HHHHHhccCCCCC-CeEEEECCCCCH--HHHHHHH--hCCeEEEEcCCC
Q 030935 59 AEYVWQQRYRFSG-ANVVELGAGTSL--PGLVAAK--VGSNVTLTDDSN 102 (169)
Q Consensus 59 a~~l~~~~~~~~~-~~vLElGcGtGl--~~l~~a~--~ga~V~~~D~~~ 102 (169)
.+|+..+... .| ++||=+||-||+ .+...+. .|++.+++-++.
T Consensus 27 I~yvk~~~~~-~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fEk 74 (78)
T PF12242_consen 27 IEYVKSQGKI-NGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFEK 74 (78)
T ss_dssp HHHHHHC----TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE---
T ss_pred HHHHHhcCCC-CCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeecc
Confidence 3455555544 44 799999998884 3333333 456888887653
No 473
>PRK14852 hypothetical protein; Provisional
Probab=59.69 E-value=49 Score=31.47 Aligned_cols=34 Identities=24% Similarity=0.301 Sum_probs=26.7
Q ss_pred CCCCeEEEECCC-CC-HHHHHHHHhCC-eEEEEcCCC
Q 030935 69 FSGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDSN 102 (169)
Q Consensus 69 ~~~~~vLElGcG-tG-l~~l~~a~~ga-~V~~~D~~~ 102 (169)
++..+|+=+||| .| .+...++..|. +++.+|.+.
T Consensus 330 L~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~ 366 (989)
T PRK14852 330 LLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDA 366 (989)
T ss_pred HhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE
Confidence 467799999999 45 45678888886 788888774
No 474
>PRK14851 hypothetical protein; Provisional
Probab=59.63 E-value=44 Score=30.46 Aligned_cols=34 Identities=18% Similarity=0.274 Sum_probs=26.4
Q ss_pred CCCCeEEEECCC-CC-HHHHHHHHhCC-eEEEEcCCC
Q 030935 69 FSGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDSN 102 (169)
Q Consensus 69 ~~~~~vLElGcG-tG-l~~l~~a~~ga-~V~~~D~~~ 102 (169)
+++.+|+=+||| .| .+...++..|. +++.+|.+.
T Consensus 41 L~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ 77 (679)
T PRK14851 41 LAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQ 77 (679)
T ss_pred HhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCE
Confidence 467899999999 55 45667788886 788888764
No 475
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=58.81 E-value=38 Score=29.13 Aligned_cols=91 Identities=11% Similarity=0.148 Sum_probs=54.8
Q ss_pred eEEEEC---CC----CCHHHHHHHHhCCe--EEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC---------
Q 030935 73 NVVELG---AG----TSLPGLVAAKVGSN--VTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS--------- 134 (169)
Q Consensus 73 ~vLElG---cG----tGl~~l~~a~~ga~--V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~--------- 134 (169)
.||=+| +| +|=++.++.++|.+ ++++|... |.++++++...+..+.++ ... +.-..+
T Consensus 102 vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~R-pAA~eQL~~La~q~~v~~--f~~--~~~~~Pv~Iak~al~ 176 (451)
T COG0541 102 VILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYR-PAAIEQLKQLAEQVGVPF--FGS--GTEKDPVEIAKAALE 176 (451)
T ss_pred EEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCC-hHHHHHHHHHHHHcCCce--ecC--CCCCCHHHHHHHHHH
Confidence 456554 44 45556666666764 78889886 889999998888776653 211 111111
Q ss_pred -CCCCCCcEEEE--cCcCCCCCChHHHHHHHHHhccC
Q 030935 135 -IFDLNPNIILG--ADVFYDASGKICAFEILICSLFP 168 (169)
Q Consensus 135 -~~~~~fDlIi~--sd~iy~~~~~~~l~~~l~~~L~p 168 (169)
.....||+||. +-=++-.+.+=.-++.+++.++|
T Consensus 177 ~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P 213 (451)
T COG0541 177 KAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINP 213 (451)
T ss_pred HHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCC
Confidence 12347899995 22234444455556677777777
No 476
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=58.62 E-value=33 Score=30.15 Aligned_cols=34 Identities=24% Similarity=0.401 Sum_probs=24.8
Q ss_pred CCCCCeEEEECCCC-CHHHH-HHHHhCCeEEEEcCC
Q 030935 68 RFSGANVVELGAGT-SLPGL-VAAKVGSNVTLTDDS 101 (169)
Q Consensus 68 ~~~~~~vLElGcGt-Gl~~l-~~a~~ga~V~~~D~~ 101 (169)
...|++|+=+|+|. |+... .+++.|++|+++|..
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~ 169 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAG 169 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence 34688999999994 44444 344568899999954
No 477
>PRK08643 acetoin reductase; Validated
Probab=58.58 E-value=70 Score=24.28 Aligned_cols=76 Identities=13% Similarity=0.087 Sum_probs=40.3
Q ss_pred CCeEEEECCCCCHHHHHH----HHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCC------CC
Q 030935 71 GANVVELGAGTSLPGLVA----AKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------DL 138 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~----a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~------~~ 138 (169)
++++|=.|+..| +|..+ ++.|++|++++.+. +.++.+...+...+....+...+..+... ... -.
T Consensus 2 ~k~~lItGas~g-iG~~la~~l~~~G~~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 78 (256)
T PRK08643 2 SKVALVTGAGQG-IGFAIAKRLVEDGFKVAIVDYNE--ETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFG 78 (256)
T ss_pred CCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 467777786555 44433 44588999999874 35554444444333333333333333211 000 13
Q ss_pred CCcEEEEcCcC
Q 030935 139 NPNIILGADVF 149 (169)
Q Consensus 139 ~fDlIi~sd~i 149 (169)
+.|++|.+--+
T Consensus 79 ~id~vi~~ag~ 89 (256)
T PRK08643 79 DLNVVVNNAGV 89 (256)
T ss_pred CCCEEEECCCC
Confidence 67988866533
No 478
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=58.38 E-value=56 Score=25.74 Aligned_cols=86 Identities=24% Similarity=0.218 Sum_probs=43.9
Q ss_pred eEEEECCCC--CHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcc---eEEEEEcCCCCcCCCCCCCcEEEEcC
Q 030935 73 NVVELGAGT--SLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNC---RVMGLTWGFLDASIFDLNPNIILGAD 147 (169)
Q Consensus 73 ~vLElGcGt--Gl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~---~~~~l~~~~~~~~~~~~~fDlIi~sd 147 (169)
+|+=+|+|. +.++..+++.|.+|++++.++ +.++.+++ ++... ... ..............+|+|+.+=
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~--~~~~~~~~----~g~~~~~~~~~-~~~~~~~~~~~~~~~d~vila~ 74 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG--AHLDALNE----NGLRLEDGEIT-VPVLAADDPAELGPQDLVILAV 74 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh--HHHHHHHH----cCCcccCCcee-ecccCCCChhHcCCCCEEEEec
Confidence 466677762 234445556678999999863 34444432 23321 000 0000000000114789998765
Q ss_pred cCCCCCChHHHHHHHHHhccC
Q 030935 148 VFYDASGKICAFEILICSLFP 168 (169)
Q Consensus 148 ~iy~~~~~~~l~~~l~~~L~p 168 (169)
--| ..+.+++.+...+.+
T Consensus 75 k~~---~~~~~~~~l~~~l~~ 92 (304)
T PRK06522 75 KAY---QLPAALPSLAPLLGP 92 (304)
T ss_pred ccc---cHHHHHHHHhhhcCC
Confidence 544 356677777666554
No 479
>PLN02827 Alcohol dehydrogenase-like
Probab=58.26 E-value=45 Score=27.56 Aligned_cols=34 Identities=29% Similarity=0.302 Sum_probs=22.9
Q ss_pred CCCCCCeEEEECCCCCHHHHHH---HH-hCC-eEEEEcCCC
Q 030935 67 YRFSGANVVELGAGTSLPGLVA---AK-VGS-NVTLTDDSN 102 (169)
Q Consensus 67 ~~~~~~~vLElGcGtGl~~l~~---a~-~ga-~V~~~D~~~ 102 (169)
...+|.+||=.|+ |.+|+.+ ++ +|+ .|++++.++
T Consensus 190 ~~~~g~~VlV~G~--G~vG~~~iqlak~~G~~~vi~~~~~~ 228 (378)
T PLN02827 190 DVSKGSSVVIFGL--GTVGLSVAQGAKLRGASQIIGVDINP 228 (378)
T ss_pred CCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEECCCH
Confidence 3457889998886 4455544 44 477 588998773
No 480
>PRK06138 short chain dehydrogenase; Provisional
Probab=58.14 E-value=78 Score=23.85 Aligned_cols=77 Identities=17% Similarity=0.195 Sum_probs=41.2
Q ss_pred CCCCeEEEECCCCCHHHHH----HHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCC------
Q 030935 69 FSGANVVELGAGTSLPGLV----AAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------ 136 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~----~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~------ 136 (169)
++++++|=.||..| +|.. +++.|++|++++.+. +..+.....+. .+....+...+..+... ...
T Consensus 3 ~~~k~~lItG~sg~-iG~~la~~l~~~G~~v~~~~r~~--~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~i~~~ 78 (252)
T PRK06138 3 LAGRVAIVTGAGSG-IGRATAKLFAREGARVVVADRDA--EAAERVAAAIA-AGGRAFARQGDVGSAEAVEALVDFVAAR 78 (252)
T ss_pred CCCcEEEEeCCCch-HHHHHHHHHHHCCCeEEEecCCH--HHHHHHHHHHh-cCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 36788999998644 4443 344688999998874 34444444333 23233333344333211 000
Q ss_pred CCCCcEEEEcCcC
Q 030935 137 DLNPNIILGADVF 149 (169)
Q Consensus 137 ~~~fDlIi~sd~i 149 (169)
-.++|+|+.+--.
T Consensus 79 ~~~id~vi~~ag~ 91 (252)
T PRK06138 79 WGRLDVLVNNAGF 91 (252)
T ss_pred cCCCCEEEECCCC
Confidence 1368988865543
No 481
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=57.86 E-value=84 Score=24.08 Aligned_cols=79 Identities=16% Similarity=0.150 Sum_probs=41.8
Q ss_pred CCCCCeEEEECCCCCHH---HHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHH-hCCcceEEEEEcCCCCc------CCC-
Q 030935 68 RFSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM-NKLNCRVMGLTWGFLDA------SIF- 136 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~---~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~-n~~~~~~~~l~~~~~~~------~~~- 136 (169)
.++++++|=.|++.|+- ...+++.|++|+++.... .+.++.....++. .+..+.+...+..+... ...
T Consensus 5 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 83 (260)
T PRK08416 5 EMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSN-VEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDE 83 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCC-HHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 35788999889876643 234455688998886543 2344433333332 23334444444433211 000
Q ss_pred -CCCCcEEEEcC
Q 030935 137 -DLNPNIILGAD 147 (169)
Q Consensus 137 -~~~fDlIi~sd 147 (169)
-.++|+++.+-
T Consensus 84 ~~g~id~lv~nA 95 (260)
T PRK08416 84 DFDRVDFFISNA 95 (260)
T ss_pred hcCCccEEEECc
Confidence 13689888654
No 482
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=57.76 E-value=60 Score=26.16 Aligned_cols=36 Identities=31% Similarity=0.428 Sum_probs=24.8
Q ss_pred CCCCCCeEEEECCC-CCHHHHH-HHHhCCeEEEEcCCC
Q 030935 67 YRFSGANVVELGAG-TSLPGLV-AAKVGSNVTLTDDSN 102 (169)
Q Consensus 67 ~~~~~~~vLElGcG-tGl~~l~-~a~~ga~V~~~D~~~ 102 (169)
....+++|+=+|+| .|...+. +...|++|+++|.++
T Consensus 148 ~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 148 ITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 34578999999997 3333222 233588999999984
No 483
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=57.69 E-value=52 Score=26.06 Aligned_cols=42 Identities=19% Similarity=0.142 Sum_probs=26.3
Q ss_pred CCCCCCeEEEECCC-CCHHHHHHHH-hCCeEEEEcCCCcHHHHHHH
Q 030935 67 YRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNM 110 (169)
Q Consensus 67 ~~~~~~~vLElGcG-tGl~~l~~a~-~ga~V~~~D~~~~~~~l~~~ 110 (169)
...++.+||=+||| .|...+.+++ .|.+|++++.++ +..+.+
T Consensus 159 ~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~--~~~~~~ 202 (330)
T cd08245 159 GPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSP--DKRELA 202 (330)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHH
Confidence 34567788888876 4444333444 477999998774 344444
No 484
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=57.66 E-value=50 Score=25.46 Aligned_cols=35 Identities=11% Similarity=0.181 Sum_probs=25.6
Q ss_pred CCCCCeEEEECCCCC-HHHHHH----HHhCCeEEEEcCCC
Q 030935 68 RFSGANVVELGAGTS-LPGLVA----AKVGSNVTLTDDSN 102 (169)
Q Consensus 68 ~~~~~~vLElGcGtG-l~~l~~----a~~ga~V~~~D~~~ 102 (169)
.++++.+|=.|+++| .+|..+ ++.|++|++++.++
T Consensus 7 ~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~ 46 (258)
T PRK07533 7 PLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLND 46 (258)
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence 357889999998862 555544 44688999998874
No 485
>PRK12829 short chain dehydrogenase; Provisional
Probab=57.34 E-value=77 Score=24.07 Aligned_cols=34 Identities=26% Similarity=0.402 Sum_probs=24.4
Q ss_pred CCCCCeEEEECCCCCHHHHHHH----HhCCeEEEEcCCC
Q 030935 68 RFSGANVVELGAGTSLPGLVAA----KVGSNVTLTDDSN 102 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a----~~ga~V~~~D~~~ 102 (169)
..+++++|=.|++.| +|..++ +.|.+|++++.++
T Consensus 8 ~~~~~~vlItGa~g~-iG~~~a~~L~~~g~~V~~~~r~~ 45 (264)
T PRK12829 8 PLDGLRVLVTGGASG-IGRAIAEAFAEAGARVHVCDVSE 45 (264)
T ss_pred ccCCCEEEEeCCCCc-HHHHHHHHHHHCCCEEEEEeCCH
Confidence 357889999998644 454443 3588999999874
No 486
>PRK12743 oxidoreductase; Provisional
Probab=56.85 E-value=86 Score=23.91 Aligned_cols=77 Identities=13% Similarity=0.054 Sum_probs=42.2
Q ss_pred CCeEEEECCCCCHHHHHHHH----hCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc------CCC--CC
Q 030935 71 GANVVELGAGTSLPGLVAAK----VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA------SIF--DL 138 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~----~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~------~~~--~~ 138 (169)
+++||=.|+. |.+|..+++ .|++|+.+.... .+..+.+...++.++..+.+...+..+... ... -.
T Consensus 2 ~k~vlItGas-~giG~~~a~~l~~~G~~V~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK12743 2 AQVAIVTASD-SGIGKACALLLAQQGFDIGITWHSD-EEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLG 79 (256)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCC-hHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4678888965 445655544 578888876543 234444444455455444444444443211 000 12
Q ss_pred CCcEEEEcCcC
Q 030935 139 NPNIILGADVF 149 (169)
Q Consensus 139 ~fDlIi~sd~i 149 (169)
+.|+||.+--.
T Consensus 80 ~id~li~~ag~ 90 (256)
T PRK12743 80 RIDVLVNNAGA 90 (256)
T ss_pred CCCEEEECCCC
Confidence 67999876544
No 487
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=56.76 E-value=32 Score=27.32 Aligned_cols=41 Identities=32% Similarity=0.353 Sum_probs=27.8
Q ss_pred CeEEEECCCC-C-HHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHH
Q 030935 72 ANVVELGAGT-S-LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVC 114 (169)
Q Consensus 72 ~~vLElGcGt-G-l~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~ 114 (169)
++|.=+|+|+ | .++..+++.|.+|++.|.+ ++.++.+++.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~--~~~l~~~~~~i 46 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVS--EEILKNAMELI 46 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCC--HHHHHHHHHHH
Confidence 4577778872 2 3455566678899999999 45777655443
No 488
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=56.64 E-value=27 Score=30.16 Aligned_cols=70 Identities=20% Similarity=0.254 Sum_probs=40.2
Q ss_pred CCCCeEEEECCC-CCHHHHH-HHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEc
Q 030935 69 FSGANVVELGAG-TSLPGLV-AAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (169)
Q Consensus 69 ~~~~~vLElGcG-tGl~~l~-~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~s 146 (169)
.++++|+=+|.| +|+..+. +...|++|+++|..+ ..++. ++..+. .+. .+....... ..+|+||-|
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~--~~~~~----l~~~g~--~~~---~~~~~~~~l-~~~D~VV~S 77 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDP--DALRP----HAERGV--ATV---STSDAVQQI-ADYALVVTS 77 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH--HHHHH----HHhCCC--EEE---cCcchHhHh-hcCCEEEEC
Confidence 467899999988 5555543 345788999999763 23222 232343 222 121111111 257999988
Q ss_pred CcCC
Q 030935 147 DVFY 150 (169)
Q Consensus 147 d~iy 150 (169)
.-+-
T Consensus 78 pGi~ 81 (488)
T PRK03369 78 PGFR 81 (488)
T ss_pred CCCC
Confidence 8764
No 489
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=56.55 E-value=71 Score=25.49 Aligned_cols=77 Identities=17% Similarity=0.181 Sum_probs=41.0
Q ss_pred CCCeEEEECCCCCHHHHHH----HHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc------CC--CC
Q 030935 70 SGANVVELGAGTSLPGLVA----AKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA------SI--FD 137 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~----a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~------~~--~~ 137 (169)
+++++|=.|+.. .+|..+ ++.|++|++++.+. +-.+.+...+...+..+.+...+..+... .. ..
T Consensus 5 ~~k~vlVTGas~-gIG~~~a~~L~~~G~~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 81 (322)
T PRK07453 5 AKGTVIITGASS-GVGLYAAKALAKRGWHVIMACRNL--KKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRALG 81 (322)
T ss_pred CCCEEEEEcCCC-hHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 567888888654 455444 34688999998773 33443333332222233344444443211 00 11
Q ss_pred CCCcEEEEcCcC
Q 030935 138 LNPNIILGADVF 149 (169)
Q Consensus 138 ~~fDlIi~sd~i 149 (169)
.+.|++|.+--+
T Consensus 82 ~~iD~li~nAg~ 93 (322)
T PRK07453 82 KPLDALVCNAAV 93 (322)
T ss_pred CCccEEEECCcc
Confidence 258999976544
No 490
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=56.20 E-value=22 Score=28.38 Aligned_cols=40 Identities=10% Similarity=-0.008 Sum_probs=24.6
Q ss_pred CCCeEEEECCC-CCHHHHHHHH-hCCe-EEEEcCCCcHHHHHHHH
Q 030935 70 SGANVVELGAG-TSLPGLVAAK-VGSN-VTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 70 ~~~~vLElGcG-tGl~~l~~a~-~ga~-V~~~D~~~~~~~l~~~~ 111 (169)
++++||=+||| .|+.++.+|+ .|++ |+++|.++ +-++.++
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~--~rl~~a~ 186 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNP--RRRDGAT 186 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH--HHHHhhh
Confidence 57788888875 4555554555 5775 77788763 3444443
No 491
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=56.15 E-value=14 Score=33.29 Aligned_cols=34 Identities=29% Similarity=0.404 Sum_probs=26.6
Q ss_pred CCCCeEEEECCCC-C-HHHHHHHHhCC-eEEEEcCCC
Q 030935 69 FSGANVVELGAGT-S-LPGLVAAKVGS-NVTLTDDSN 102 (169)
Q Consensus 69 ~~~~~vLElGcGt-G-l~~l~~a~~ga-~V~~~D~~~ 102 (169)
+++.+||=+|||+ | .++..++..|. +++.+|.+.
T Consensus 336 L~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~ 372 (664)
T TIGR01381 336 YSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGK 372 (664)
T ss_pred HhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE
Confidence 3677999999995 6 45667788886 799999764
No 492
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=55.84 E-value=78 Score=23.78 Aligned_cols=77 Identities=14% Similarity=0.033 Sum_probs=40.5
Q ss_pred CCCCeEEEECCCCCHHHHH----HHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC--C------C
Q 030935 69 FSGANVVELGAGTSLPGLV----AAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS--I------F 136 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~----~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~--~------~ 136 (169)
++++++|=.|+..| +|.. +++.|.+|++++.++ +-++.+...+.. +....+...+..+.... . .
T Consensus 3 ~~~~~vlItGasg~-iG~~l~~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 78 (251)
T PRK07231 3 LEGKVAIVTGASSG-IGEGIARRFAAEGARVVVTDRNE--EAAERVAAEILA-GGRAIAVAADVSDEADVEAAVAAALER 78 (251)
T ss_pred cCCcEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHhc-CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 35678888887654 4433 344688999999984 344444343332 22233333333322110 0 0
Q ss_pred CCCCcEEEEcCcC
Q 030935 137 DLNPNIILGADVF 149 (169)
Q Consensus 137 ~~~fDlIi~sd~i 149 (169)
-.++|+||.+--.
T Consensus 79 ~~~~d~vi~~ag~ 91 (251)
T PRK07231 79 FGSVDILVNNAGT 91 (251)
T ss_pred hCCCCEEEECCCC
Confidence 1268999876544
No 493
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=55.68 E-value=53 Score=26.28 Aligned_cols=34 Identities=21% Similarity=0.116 Sum_probs=23.3
Q ss_pred CCCCCCeEEEECCCCCHHHHHH---HH-hCCeEEEEcCCC
Q 030935 67 YRFSGANVVELGAGTSLPGLVA---AK-VGSNVTLTDDSN 102 (169)
Q Consensus 67 ~~~~~~~vLElGcGtGl~~l~~---a~-~ga~V~~~D~~~ 102 (169)
....+.+||=.|+ |.+|.++ ++ +|++|++++.++
T Consensus 160 ~~~~~~~vlV~g~--g~iG~~~~~~a~~~G~~vi~~~~~~ 197 (333)
T cd08296 160 GAKPGDLVAVQGI--GGLGHLAVQYAAKMGFRTVAISRGS 197 (333)
T ss_pred CCCCCCEEEEECC--cHHHHHHHHHHHHCCCeEEEEeCCh
Confidence 4456788888885 5555544 33 577999998874
No 494
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=55.68 E-value=31 Score=31.45 Aligned_cols=92 Identities=14% Similarity=0.030 Sum_probs=51.2
Q ss_pred CeEEEECCCCC--HHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHh-------C-Ccc-----eEEEEEcCCCCcCCC
Q 030935 72 ANVVELGAGTS--LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN-------K-LNC-----RVMGLTWGFLDASIF 136 (169)
Q Consensus 72 ~~vLElGcGtG--l~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n-------~-~~~-----~~~~l~~~~~~~~~~ 136 (169)
++|-=||+|+= .++..+|..|.+|++.|.+ ++.++.++..+..+ + +.. ....+........
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~--~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-- 389 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDIN--QKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAG-- 389 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCC--HHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHH--
Confidence 46888999963 4455667788999999999 45776655544321 1 100 0001111111111
Q ss_pred CCCCcEEEEcCcCCCCCChHHHHHHHHHhccC
Q 030935 137 DLNPNIILGADVFYDASGKICAFEILICSLFP 168 (169)
Q Consensus 137 ~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p 168 (169)
-...|+||=+ +.-+.+.-..+|+.|-..++|
T Consensus 390 ~~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~ 420 (715)
T PRK11730 390 FERVDVVVEA-VVENPKVKAAVLAEVEQKVRE 420 (715)
T ss_pred hcCCCEEEec-ccCcHHHHHHHHHHHHhhCCC
Confidence 1256777732 333445556777777776665
No 495
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=55.13 E-value=39 Score=28.97 Aligned_cols=33 Identities=27% Similarity=0.392 Sum_probs=24.3
Q ss_pred CCCeEEEECCCCCHHH--HHHHHhCCeEEEEcCCC
Q 030935 70 SGANVVELGAGTSLPG--LVAAKVGSNVTLTDDSN 102 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~--l~~a~~ga~V~~~D~~~ 102 (169)
.+++|+=+|+|...++ ..+++.|.+|+..|..+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~ 174 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHP 174 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 5679999999965443 34456788999998764
No 496
>PRK05872 short chain dehydrogenase; Provisional
Probab=54.94 E-value=83 Score=24.84 Aligned_cols=80 Identities=14% Similarity=0.040 Sum_probs=42.6
Q ss_pred CCCCCeEEEECCCCCHHH---HHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc------CCC--
Q 030935 68 RFSGANVVELGAGTSLPG---LVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA------SIF-- 136 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~---l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~------~~~-- 136 (169)
.++++++|=.|++.|+-. ..+++.|++|++++.++ +-++.+.+.+.. +..+.....+..+... ...
T Consensus 6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~--~~l~~~~~~l~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 82 (296)
T PRK05872 6 SLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEE--AELAALAAELGG-DDRVLTVVADVTDLAAMQAAAEEAVER 82 (296)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHhcC-CCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 357889998887665432 23344688999999874 344443333321 2222222244433211 000
Q ss_pred CCCCcEEEEcCcCC
Q 030935 137 DLNPNIILGADVFY 150 (169)
Q Consensus 137 ~~~fDlIi~sd~iy 150 (169)
-.++|++|.+--+.
T Consensus 83 ~g~id~vI~nAG~~ 96 (296)
T PRK05872 83 FGGIDVVVANAGIA 96 (296)
T ss_pred cCCCCEEEECCCcC
Confidence 13689999766543
No 497
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=54.83 E-value=86 Score=23.30 Aligned_cols=32 Identities=25% Similarity=0.312 Sum_probs=23.6
Q ss_pred CCCeEEEECCCCCHHHHHHHH----hCCeEEEEcCCC
Q 030935 70 SGANVVELGAGTSLPGLVAAK----VGSNVTLTDDSN 102 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~----~ga~V~~~D~~~ 102 (169)
++++||=.|+ +|.+|..+++ .|.+|++++.++
T Consensus 4 ~~~~ilItGa-sg~iG~~l~~~l~~~g~~v~~~~r~~ 39 (246)
T PRK05653 4 QGKTALVTGA-SRGIGRAIALRLAADGAKVVIYDSNE 39 (246)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 4578888886 6777766544 577899998874
No 498
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=54.38 E-value=89 Score=23.32 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=23.6
Q ss_pred CCCCeEEEECCCCCHHHHHHH----HhCCeEEEEcCCC
Q 030935 69 FSGANVVELGAGTSLPGLVAA----KVGSNVTLTDDSN 102 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a----~~ga~V~~~D~~~ 102 (169)
+++++||=.|++ |.+|..++ +.|++|++++.++
T Consensus 3 ~~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~ 39 (238)
T PRK05786 3 LKGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNE 39 (238)
T ss_pred cCCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCH
Confidence 357899999986 44444443 4588999999874
No 499
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=54.34 E-value=52 Score=28.39 Aligned_cols=72 Identities=19% Similarity=0.235 Sum_probs=41.3
Q ss_pred CCCeEEEECCC-CCHHHH-HHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcC
Q 030935 70 SGANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGAD 147 (169)
Q Consensus 70 ~~~~vLElGcG-tGl~~l-~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd 147 (169)
.+++|+=+|=| +|+... ++.+.|++|++.|..+. .......-....++ . ...+.... .....+|+|+-|.
T Consensus 6 ~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~--~~~~~~~~~~~~~i--~---~~~g~~~~-~~~~~~d~vV~SP 77 (448)
T COG0771 6 QGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPA--PEGLAAQPLLLEGI--E---VELGSHDD-EDLAEFDLVVKSP 77 (448)
T ss_pred cCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCC--ccchhhhhhhccCc--e---eecCccch-hccccCCEEEECC
Confidence 47899999988 665544 55667999999999875 21111111111222 2 22222211 2234789999888
Q ss_pred cC
Q 030935 148 VF 149 (169)
Q Consensus 148 ~i 149 (169)
=|
T Consensus 78 Gi 79 (448)
T COG0771 78 GI 79 (448)
T ss_pred CC
Confidence 55
No 500
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=53.89 E-value=88 Score=25.33 Aligned_cols=30 Identities=23% Similarity=0.223 Sum_probs=18.5
Q ss_pred eEEEECCC-CC-HHHHHHHHhCC-eEEEEcCCC
Q 030935 73 NVVELGAG-TS-LPGLVAAKVGS-NVTLTDDSN 102 (169)
Q Consensus 73 ~vLElGcG-tG-l~~l~~a~~ga-~V~~~D~~~ 102 (169)
+||=+||| .| -+...++..|. +++.+|.+.
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~ 33 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDT 33 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 46778877 23 22334455675 788888764
Done!