BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>030938
MMTPQKFVTTHLTQKSSLRAMASTIPWSSLSRAPTLLRVRNNARPVTCKAHAPKSAQALH
ASRRNLLFFSLTALPVLTARESASSAEDIPLFGLRRKLKQAEEEAVDIVREVEKKIETVE
ERIEASEKEVETTAGFGGLAQAGAVAGAELVGLLVATSVVNGILGPEPQ

High Scoring Gene Products

Symbol, full name Information P value
YCF37
AT2G23670 		protein from Arabidopsis thaliana 1.3e-20

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030938
        (169 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2046832 - symbol:YCF37 "AT2G23670" species:370...   243  1.3e-20   1


>TAIR|locus:2046832 [details] [associations]
            symbol:YCF37 "AT2G23670" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0009543 "chloroplast thylakoid lumen"
            evidence=ISS] [GO:0009535 "chloroplast thylakoid membrane"
            evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA] [GO:0009534
            "chloroplast thylakoid" evidence=IDA] [GO:0006098
            "pentose-phosphate shunt" evidence=RCA] [GO:0010027 "thylakoid
            membrane organization" evidence=RCA] [GO:0019288 "isopentenyl
            diphosphate biosynthetic process, mevalonate-independent pathway"
            evidence=RCA] EMBL:AC003040 EMBL:CP002685 GenomeReviews:CT485783_GR
            GO:GO:0009535 EMBL:AC004482 EMBL:AY058127 EMBL:AY094056
            EMBL:FJ172355 IPI:IPI00523336 PIR:T01155 RefSeq:NP_565556.1
            UniGene:At.12618 UniGene:At.70503 STRING:O64835 PaxDb:O64835
            PRIDE:O64835 EnsemblPlants:AT2G23670.1 GeneID:816898
            KEGG:ath:AT2G23670 TAIR:At2g23670 eggNOG:NOG279487
            HOGENOM:HOG000239613 InParanoid:O64835 OMA:FETAEKG PhylomeDB:O64835
            ProtClustDB:CLSN2688373 ArrayExpress:O64835 Genevestigator:O64835
            Uniprot:O64835
        Length = 167

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 71/166 (42%), Positives = 87/166 (52%)

Query:    21 MASTIPWSSLSRAPTLLRVR--NNARPVTCKAHAPKSAQALH----ASRRNLLFFSLTAL 74
             MAST+  S LS     L+ R    A      AH+ K A +      ASRRNLLF SLTA 
Sbjct:     1 MASTVSLSLLSGGSGALQARCARTAHVSPRAAHSNKPALSSFSLTGASRRNLLF-SLTAA 59

Query:    75 PVLTARESASSAEDIPLFGLRRKLKQAEEEAVDIVRE-----------VEKKIETVEERI 123
              V+T  + AS AE+IPLFG+R+KLK+AEEEAV+IV+E            EK +E  E  +
Sbjct:    60 TVVTGLQPASMAENIPLFGIRKKLKKAEEEAVEIVKEGFETAEKGVDAAEKGLEAAERGV 119

Query:   124 EASEKEVETTXXXXXXXXXXXXXXXXXXXXXXXTSVVNGILGPEPQ 169
             E +EKE+ T                        TSVVNGILGPE Q
Sbjct:   120 ETAEKEIVTAVSFNGLTQAGAVVAAEFVGVLVATSVVNGILGPEAQ 165


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.124   0.335    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      169       146   0.00079  103 3  10 23  0.48    31
                                                     30  0.49    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  580 (62 KB)
  Total size of DFA:  153 KB (2093 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  28.47u 0.21s 28.68t   Elapsed:  00:00:01
  Total cpu time:  28.47u 0.21s 28.68t   Elapsed:  00:00:01
  Start:  Fri May 10 04:51:48 2013   End:  Fri May 10 04:51:49 2013

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