BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030938
         (169 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1MQL|B Chain B, Bha Of Ukr63
 pdb|1MQL|E Chain E, Bha Of Ukr63
 pdb|1MQL|H Chain H, Bha Of Ukr63
 pdb|1MQM|B Chain B, BhaLSTA
 pdb|1MQM|E Chain E, BhaLSTA
 pdb|1MQM|H Chain H, BhaLSTA
 pdb|1MQN|B Chain B, BhaLSTC
 pdb|1MQN|E Chain E, BhaLSTC
 pdb|1MQN|H Chain H, BhaLSTC
          Length = 221

 Score = 27.3 bits (59), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 23/40 (57%)

Query: 94  LRRKLKQAEEEAVDIVREVEKKIETVEERIEASEKEVETT 133
           + RKL +  E+  +   ++EK+   VE RI+  EK VE T
Sbjct: 48  INRKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDT 87


>pdb|1HA0|A Chain A, Hemagglutinin Precursor Ha0
          Length = 494

 Score = 26.6 bits (57), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 94  LRRKLKQAEEEAVDIVREVEKKIETVEERIEASEKEVETT 133
           +  KL +  E+  +   ++EK+   VE RI+  EK VE T
Sbjct: 369 INGKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDT 408


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.124    0.335 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,366,495
Number of Sequences: 62578
Number of extensions: 92799
Number of successful extensions: 364
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 340
Number of HSP's gapped (non-prelim): 32
length of query: 169
length of database: 14,973,337
effective HSP length: 92
effective length of query: 77
effective length of database: 9,216,161
effective search space: 709644397
effective search space used: 709644397
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (23.1 bits)