BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030938
(169 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O60293|ZC3H1_HUMAN Zinc finger C3H1 domain-containing protein OS=Homo sapiens
GN=ZFC3H1 PE=1 SV=3
Length = 1989
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 57/112 (50%), Gaps = 14/112 (12%)
Query: 36 LLRVRNNARPVTCKAHAPKSAQALHASRRNLLFFSLTALPVLTARESASSAEDIPLFGLR 95
L +V++ A+P++ K+ S+Q L +NL ++ +L+ ++ E++ LR
Sbjct: 317 LKKVKDGAKPLSLKSDTTDSSQGLQDKEQNLT-RRISTSDILSEKKLGEDEEELSELQLR 375
Query: 96 --------RKLKQAEEEAVDIVREVEKKIETVEERIEASE-----KEVETTA 134
+K +Q E++ + +E K +TV+++++ S K+V TTA
Sbjct: 376 LLALQSASKKWQQKEQQVMKESKEKLTKTKTVQQKVKTSTKTHSAKKVSTTA 427
>sp|A1UUB4|DEF_BARBK Peptide deformylase OS=Bartonella bacilliformis (strain ATCC 35685
/ KC583) GN=def PE=3 SV=1
Length = 182
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 108 IVREVEKKIETVEERIEA-SEKEVETTAGFGGLAQAGAVAGAELVGLLVATSVVNGILGP 166
I+RE+ K +E ++ I+ ++ +ET GG+ A G L L+V S+ I P
Sbjct: 13 ILREISKPVEHIDSTIQQLADDMLETMYNAGGIGLAAIQVGIPLRMLVVDVSIFTSIFEP 72
Query: 167 E-PQ 169
+ PQ
Sbjct: 73 DAPQ 76
>sp|Q86GC8|ACES_CULPI Acetylcholinesterase OS=Culex pipiens GN=ACHE1 PE=2 SV=2
Length = 702
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 12 LTQKSSLRAMASTIPWSSLSRAPTLLRVRNNARPVTCKAHAPKSAQALHASR 63
L Q++ L++ + T PW+ +SR LR A V C A K + A+ R
Sbjct: 345 LFQRAILQSGSPTAPWALVSREEATLRALRLAEAVNCPHDATKLSDAVECLR 396
>sp|P93203|MFP1_SOLLC MAR-binding filament-like protein 1 OS=Solanum lycopersicum
GN=MFP1 PE=1 SV=1
Length = 697
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 26 PWSSLSRAPTLLRVRNNARPVTCKAHAPKSAQALHASRRNLLFFSLTALPVLTAR 80
P S R + R + RPV H+ ++ +RR++LF + LP+L R
Sbjct: 23 PLLSCPRNTQICRKK---RPVMASMHSENQKESNVCNRRSILFVGFSVLPLLNLR 74
>sp|A4Q9F3|TTL10_MOUSE Protein polyglycylase TTLL10 OS=Mus musculus GN=Ttll10 PE=1 SV=1
Length = 704
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
Query: 39 VRNNARPVTCKAHAPKSAQALHASRRNLLFFSLTALPVLTA-RESASSAEDIPLFGLRRK 97
RN R + C+ P++ + S+R+ + T +P T ++ SS ++ LR +
Sbjct: 75 TRNRPRFIHCRGQPPRTRVSSKRSKRSRIHPCHTEVPGWTHEKQMGSSVKE----RLRPE 130
Query: 98 LKQAEEEAVDIVREVEKKIETVEERIEASEKEVETTAGFGGLAQAGAVAGAELV 151
L Q +++A D+ E ++ E + + + G G G GA ++
Sbjct: 131 LSQLDQDADDLEEEEAARLPVTSPDGLLMEGDKQPSPGQGPFFYIGGTNGASII 184
>sp|B2GF13|SYS_LACF3 Serine--tRNA ligase OS=Lactobacillus fermentum (strain NBRC 3956 /
LMG 18251) GN=serS PE=3 SV=1
Length = 432
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 44/72 (61%), Gaps = 8/72 (11%)
Query: 59 LHASRRNLLFFSLTALPVLTARESASSAEDIPLFGLRRKLKQAEEEAVDIVREVEKKIET 118
L A RR LL + T L A+ + +S + G ++ KQ+ +EA+ +R+V + I+
Sbjct: 34 LDAKRRELLQQTET----LKAKRNEASKK----IGEAKRAKQSADEAIAEMRQVGEDIKA 85
Query: 119 VEERIEASEKEV 130
++E++EA++K++
Sbjct: 86 LDEQVEANDKDL 97
>sp|Q9VHB9|TRM44_DROME Probable tRNA (uracil-O(2)-)-methyltransferase OS=Drosophila
melanogaster GN=trmt44 PE=2 SV=2
Length = 521
Score = 30.4 bits (67), Expect = 5.2, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 76 VLTARESASSAEDIPLFGLRRKLKQAEEEAVDIVREVEKKIETVEERIEASEKE 129
+L R S + + L G++RK +A E+ V+E +K +T + +I+ EKE
Sbjct: 344 ILQDRLKIPSTKRLALLGIKRKASKAIEDLEYFVQEELRKYKTGDAKIKLREKE 397
>sp|P53692|SMC6_SCHPO Structural maintenance of chromosomes protein 6
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=smc6 PE=1 SV=1
Length = 1140
Score = 30.4 bits (67), Expect = 6.0, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 95 RRKLKQAEEEAVDIVREVEKKIETVEERIEASEKEVETTAG 135
RR++ E + + ++ +KI+T+E RI +EKE+E+ AG
Sbjct: 768 RREVNSLESQELSVLDT--EKIQTLERRISETEKELESYAG 806
>sp|Q96PV0|SYGP1_HUMAN Ras GTPase-activating protein SynGAP OS=Homo sapiens GN=SYNGAP1 PE=1
SV=4
Length = 1343
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 26/40 (65%)
Query: 92 FGLRRKLKQAEEEAVDIVREVEKKIETVEERIEASEKEVE 131
+ L+ K +E +D V+E E++I +++ER+ S +++E
Sbjct: 1178 YKLKEYSKSMDESRLDRVKEYEEEIHSLKERLHMSNRKLE 1217
>sp|F6SEU4|SYGP1_MOUSE Ras GTPase-activating protein SynGAP OS=Mus musculus GN=Syngap1 PE=3
SV=2
Length = 1340
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 26/40 (65%)
Query: 92 FGLRRKLKQAEEEAVDIVREVEKKIETVEERIEASEKEVE 131
+ L+ K +E +D V+E E++I +++ER+ S +++E
Sbjct: 1175 YKLKEYSKSMDESRLDRVKEYEEEIHSLKERLHMSNRKLE 1214
>sp|Q9QUH6|SYGP1_RAT Ras GTPase-activating protein SynGAP OS=Rattus norvegicus GN=Syngap1
PE=1 SV=2
Length = 1308
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 26/40 (65%)
Query: 92 FGLRRKLKQAEEEAVDIVREVEKKIETVEERIEASEKEVE 131
+ L+ K +E +D V+E E++I +++ER+ S +++E
Sbjct: 1178 YKLKEYSKSMDESRLDRVKEYEEEIHSLKERLHMSNRKLE 1217
>sp|P13866|SC5A1_HUMAN Sodium/glucose cotransporter 1 OS=Homo sapiens GN=SLC5A1 PE=1 SV=1
Length = 664
Score = 30.0 bits (66), Expect = 7.3, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 66 LLFFSLTALPVLTARESASSAEDIPLFGLRRKLKQAEEEAVDIVREVEKKIETVEERIEA 125
++ F+++ + ++ D+ L+ L L+ ++EE +D+ E E E +E IE
Sbjct: 531 IILFAISFITIVVISLLTKPIPDVHLYRLCWSLRNSKEERIDLDAEEENIQEGPKETIEI 590
Query: 126 SEKEVETTAG--------FGGLAQAGA 144
+ E G F GL Q GA
Sbjct: 591 ETQVPEKKKGIFRRAYDLFCGLEQHGA 617
>sp|A7I781|RFCL_METB6 Replication factor C large subunit OS=Methanoregula boonei (strain
6A8) GN=rfcL PE=3 SV=1
Length = 481
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 54 KSAQALHASRRNLLFFSLTALPVLTARESASSAED--IPLFGLRRKL--KQAEEEAVDIV 109
+SA+ S N+L+ S L + +S +D + +F L + K ++EE + +
Sbjct: 186 ESAEGDMRSAVNMLYASAIGRQSLDGKNVHTSQKDERVSIFSLVTAVFGKTSDEELIRLS 245
Query: 110 REVEKKIETVEERIEASEKEVETTAGFG 137
R+V++ E +E+ +E S + AG G
Sbjct: 246 RDVDEFPEDIEQWVEGSVHTITDPAGLG 273
>sp|Q0KC14|AROC_CUPNH Chorismate synthase OS=Cupriavidus necator (strain ATCC 17699 / H16
/ DSM 428 / Stanier 337) GN=aroC PE=3 SV=2
Length = 369
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 128 KEVETTAGFGGLAQAGAVAGAELVGLLVATSVVNGILG 165
K VE AGF +AQ G+V G EL T+ G+LG
Sbjct: 241 KGVEIGAGFDSVAQRGSVHGDELTAEGFRTNNSGGVLG 278
>sp|P03442|HEMA_I63A3 Hemagglutinin OS=Influenza A virus (strain A/Duck/Ukraine/1/1963
H3N8) GN=HA PE=1 SV=1
Length = 566
Score = 29.6 bits (65), Expect = 9.9, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 94 LRRKLKQAEEEAVDIVREVEKKIETVEERIEASEKEVETT 133
+ RKL + E+ + ++EK+ VE RI+ EK VE T
Sbjct: 393 INRKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDT 432
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.127 0.342
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,100,080
Number of Sequences: 539616
Number of extensions: 1841204
Number of successful extensions: 12061
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 118
Number of HSP's that attempted gapping in prelim test: 11937
Number of HSP's gapped (non-prelim): 245
length of query: 169
length of database: 191,569,459
effective HSP length: 109
effective length of query: 60
effective length of database: 132,751,315
effective search space: 7965078900
effective search space used: 7965078900
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)