Query 030938
Match_columns 169
No_of_seqs 14 out of 16
Neff 2.1
Searched_HMMs 46136
Date Fri Mar 29 06:49:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030938.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030938hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03179 V-ATPase_G: Vacuolar 93.4 0.26 5.6E-06 35.5 5.5 37 96-132 7-44 (105)
2 TIGR01147 V_ATP_synt_G vacuola 88.2 1.7 3.6E-05 33.6 5.8 39 93-132 7-46 (113)
3 PRK10132 hypothetical protein; 84.7 6.4 0.00014 30.0 7.3 57 94-157 46-102 (108)
4 PLN00042 photosystem II oxygen 83.6 0.78 1.7E-05 40.2 2.2 56 39-97 31-88 (260)
5 KOG1772 Vacuolar H+-ATPase V1 82.3 4.1 8.8E-05 32.1 5.4 39 97-135 10-49 (108)
6 PF05957 DUF883: Bacterial pro 82.1 13 0.00027 26.4 7.5 30 125-157 60-89 (94)
7 PRK10404 hypothetical protein; 79.1 15 0.00032 27.7 7.3 25 130-157 72-96 (101)
8 PRK01558 V-type ATP synthase s 74.7 7.6 0.00016 31.3 5.1 15 100-114 30-44 (198)
9 TIGR02926 AhaH ATP synthase ar 72.3 17 0.00037 25.6 5.8 17 97-113 14-30 (85)
10 PRK07352 F0F1 ATP synthase sub 72.1 14 0.00031 28.6 5.9 25 94-118 76-100 (174)
11 PRK13460 F0F1 ATP synthase sub 71.5 14 0.00031 28.7 5.8 21 95-115 74-94 (173)
12 PRK14472 F0F1 ATP synthase sub 70.4 16 0.00034 28.5 5.8 21 95-115 76-96 (175)
13 PRK06568 F0F1 ATP synthase sub 69.3 17 0.00037 29.1 5.9 19 95-113 62-80 (154)
14 PRK01194 V-type ATP synthase s 68.5 19 0.00041 28.9 6.0 21 98-118 22-42 (185)
15 PRK02292 V-type ATP synthase s 66.0 24 0.00052 27.4 6.0 33 98-130 22-55 (188)
16 PRK13461 F0F1 ATP synthase sub 65.8 25 0.00053 26.8 5.9 24 94-117 62-85 (159)
17 PRK08404 V-type ATP synthase s 64.8 29 0.00063 25.8 6.0 15 97-111 7-21 (103)
18 CHL00118 atpG ATP synthase CF0 64.6 26 0.00057 26.9 5.9 14 98-111 83-96 (156)
19 TIGR01144 ATP_synt_b ATP synth 64.6 27 0.00058 26.0 5.8 22 95-116 53-74 (147)
20 COG2811 NtpF Archaeal/vacuolar 64.5 25 0.00055 27.4 5.8 19 97-115 33-51 (108)
21 COG1390 NtpE Archaeal/vacuolar 63.7 27 0.00058 28.8 6.1 27 92-118 2-32 (194)
22 PRK05759 F0F1 ATP synthase sub 63.3 30 0.00065 25.9 5.9 21 94-114 61-81 (156)
23 PF00430 ATP-synt_B: ATP synth 63.2 21 0.00046 25.4 4.9 13 99-111 61-73 (132)
24 PRK01558 V-type ATP synthase s 62.5 30 0.00065 27.9 6.1 21 97-117 16-36 (198)
25 PRK13453 F0F1 ATP synthase sub 62.2 28 0.00061 27.2 5.8 21 95-115 76-96 (173)
26 PRK06231 F0F1 ATP synthase sub 62.1 26 0.00057 28.6 5.8 8 46-53 26-33 (205)
27 PRK13455 F0F1 ATP synthase sub 61.8 29 0.00063 27.2 5.8 9 103-111 93-101 (184)
28 TIGR02926 AhaH ATP synthase ar 61.5 37 0.00081 23.8 5.8 18 96-113 2-19 (85)
29 PRK14475 F0F1 ATP synthase sub 61.2 31 0.00067 26.8 5.8 15 97-111 70-84 (167)
30 PRK14473 F0F1 ATP synthase sub 61.1 32 0.00069 26.3 5.8 19 95-113 66-84 (164)
31 PF01991 vATP-synt_E: ATP synt 60.7 32 0.0007 26.0 5.7 18 99-116 4-21 (198)
32 PRK01005 V-type ATP synthase s 60.5 31 0.00067 28.7 6.0 17 97-113 21-37 (207)
33 COG4575 ElaB Uncharacterized c 60.3 71 0.0015 25.0 7.6 58 96-156 37-98 (104)
34 CHL00019 atpF ATP synthase CF0 58.8 35 0.00076 26.8 5.8 17 97-113 84-100 (184)
35 PRK07353 F0F1 ATP synthase sub 58.5 43 0.00092 24.7 5.9 18 96-113 64-81 (140)
36 TIGR03321 alt_F1F0_F0_B altern 57.5 35 0.00075 28.1 5.8 21 95-115 63-83 (246)
37 PRK09174 F0F1 ATP synthase sub 56.6 39 0.00084 27.8 5.9 15 97-111 113-127 (204)
38 PRK14471 F0F1 ATP synthase sub 56.3 45 0.00097 25.5 5.9 17 97-113 68-84 (164)
39 PRK03963 V-type ATP synthase s 55.6 47 0.001 25.8 6.0 17 97-113 11-27 (198)
40 PRK01005 V-type ATP synthase s 55.4 33 0.00072 28.5 5.4 16 98-113 33-48 (207)
41 PLN00067 PsbP domain-containin 54.5 12 0.00025 33.2 2.7 48 21-70 3-52 (263)
42 TIGR02499 HrpE_YscL_not type I 52.2 53 0.0011 24.4 5.6 22 97-118 18-39 (166)
43 PF02093 Gag_p30: Gag P30 core 52.0 4.8 0.0001 34.5 0.0 22 93-114 179-204 (211)
44 PRK09173 F0F1 ATP synthase sub 51.5 61 0.0013 24.7 5.9 17 97-113 62-78 (159)
45 PRK14474 F0F1 ATP synthase sub 50.2 54 0.0012 27.5 5.9 18 96-113 64-81 (250)
46 PRK15322 invasion protein OrgB 48.9 49 0.0011 28.6 5.6 21 98-118 18-38 (210)
47 PRK13428 F0F1 ATP synthase sub 48.8 51 0.0011 29.9 5.9 17 97-113 61-77 (445)
48 PRK12704 phosphodiesterase; Pr 48.1 51 0.0011 30.8 5.9 23 94-116 29-51 (520)
49 TIGR03825 FliH_bacil flagellar 47.9 62 0.0013 26.8 5.9 24 96-119 44-67 (255)
50 PF06188 HrpE: HrpE/YscL/FliH 45.2 70 0.0015 25.9 5.7 22 97-118 35-56 (191)
51 PF12597 DUF3767: Protein of u 44.9 64 0.0014 24.9 5.2 58 13-93 14-75 (118)
52 PRK01194 V-type ATP synthase s 40.7 1.1E+02 0.0023 24.6 6.0 22 97-118 10-31 (185)
53 PF12072 DUF3552: Domain of un 40.7 89 0.0019 25.2 5.6 25 94-118 25-49 (201)
54 PRK03963 V-type ATP synthase s 40.2 1.1E+02 0.0023 23.9 5.8 17 97-113 22-38 (198)
55 PRK08404 V-type ATP synthase s 39.7 1.2E+02 0.0026 22.5 5.8 18 96-113 17-34 (103)
56 COG0711 AtpF F0F1-type ATP syn 39.3 1.1E+02 0.0025 23.8 5.9 15 97-111 66-80 (161)
57 PRK02292 V-type ATP synthase s 38.3 1.4E+02 0.0029 23.3 6.1 21 98-118 11-31 (188)
58 TIGR03319 YmdA_YtgF conserved 37.6 96 0.0021 28.9 6.0 22 95-116 24-45 (514)
59 PRK06937 type III secretion sy 37.5 1.1E+02 0.0023 24.5 5.6 23 97-119 35-57 (204)
60 TIGR01845 outer_NodT efflux tr 37.1 1.3E+02 0.0028 25.2 6.2 18 87-104 335-355 (454)
61 COG2811 NtpF Archaeal/vacuolar 35.7 1.5E+02 0.0032 23.3 5.9 16 119-134 71-86 (108)
62 cd04702 ASRGL1_like ASRGL1_lik 34.6 39 0.00085 29.6 2.9 46 93-138 20-65 (261)
63 PF01434 Peptidase_M41: Peptid 33.1 1E+02 0.0022 24.8 4.9 30 95-124 171-200 (213)
64 PRK02542 photosystem I assembl 32.4 34 0.00073 29.1 2.1 26 85-110 152-179 (188)
65 PF11221 Med21: Subunit 21 of 32.3 1.1E+02 0.0024 23.6 4.8 29 96-124 111-139 (144)
66 CHL00036 ycf4 photosystem I as 31.9 35 0.00075 28.9 2.1 27 84-110 147-175 (184)
67 PF10518 TAT_signal: TAT (twin 31.2 46 0.001 19.6 2.0 13 61-73 2-14 (26)
68 cd04512 Ntn_Asparaginase_2_lik 29.9 57 0.0012 28.3 3.1 46 93-138 17-62 (248)
69 PF08946 Osmo_CC: Osmosensory 29.6 94 0.002 21.5 3.5 27 103-129 4-34 (46)
70 PF01991 vATP-synt_E: ATP synt 28.8 2.1E+02 0.0046 21.6 5.7 15 99-113 15-29 (198)
71 PF07946 DUF1682: Protein of u 28.2 1.9E+02 0.0041 25.0 6.0 34 95-128 257-292 (321)
72 KOG4403 Cell surface glycoprot 27.9 1.6E+02 0.0035 28.8 5.9 24 114-137 309-332 (575)
73 PF00430 ATP-synt_B: ATP synth 27.8 2.2E+02 0.0047 20.2 5.3 8 104-111 48-55 (132)
74 PF12999 PRKCSH-like: Glucosid 26.4 1.6E+02 0.0034 24.6 5.0 6 25-30 48-53 (176)
75 PRK14472 F0F1 ATP synthase sub 26.2 2.6E+02 0.0057 21.7 5.9 16 103-118 66-81 (175)
76 PRK09098 type III secretion sy 25.1 2.1E+02 0.0045 24.1 5.5 20 96-115 43-62 (233)
77 PRK00106 hypothetical protein; 24.5 2E+02 0.0044 27.4 5.9 19 98-116 48-66 (535)
78 PRK13452 atpC F0F1 ATP synthas 24.4 1.8E+02 0.0039 22.8 4.8 53 83-139 84-139 (145)
79 PF02392 Ycf4: Ycf4; InterPro 24.4 56 0.0012 27.5 2.0 26 85-110 145-172 (180)
80 PLN02372 violaxanthin de-epoxi 24.1 1.7E+02 0.0037 28.0 5.3 31 94-124 366-400 (455)
81 KOG1593 Asparaginase [Amino ac 23.9 79 0.0017 29.2 3.0 41 98-138 36-77 (349)
82 PRK06568 F0F1 ATP synthase sub 23.5 3.3E+02 0.0071 21.9 6.1 22 94-115 40-64 (154)
83 cd04701 Asparaginase_2 L-Aspar 23.5 83 0.0018 27.4 3.0 46 93-138 23-68 (260)
84 PLN02956 PSII-Q subunit 23.5 2.1E+02 0.0046 24.3 5.3 60 61-121 40-101 (185)
85 PRK05759 F0F1 ATP synthase sub 22.8 3.3E+02 0.0071 20.3 5.9 11 103-113 52-62 (156)
86 PF15290 Syntaphilin: Golgi-lo 22.7 2E+02 0.0042 26.4 5.2 20 106-125 116-135 (305)
87 PF06103 DUF948: Bacterial pro 22.6 2.7E+02 0.0059 19.3 5.9 34 95-128 32-65 (90)
88 PRK10884 SH3 domain-containing 22.3 4E+02 0.0087 22.2 6.6 11 139-149 174-184 (206)
89 PRK07352 F0F1 ATP synthase sub 22.0 3.5E+02 0.0076 21.0 5.9 15 103-117 67-81 (174)
90 COG1390 NtpE Archaeal/vacuolar 21.9 3.5E+02 0.0076 22.3 6.2 11 103-113 28-38 (194)
91 KOG0796 Spliceosome subunit [R 21.9 1.9E+02 0.0041 26.5 5.0 15 97-111 123-137 (319)
92 PLN02689 Bifunctional isoaspar 21.8 97 0.0021 27.6 3.1 57 93-149 26-100 (318)
93 TIGR01241 FtsH_fam ATP-depende 21.4 2.2E+02 0.0048 25.5 5.3 32 94-125 450-481 (495)
94 COG1446 Asparaginase [Amino ac 21.4 1E+02 0.0022 28.0 3.2 66 95-160 24-109 (307)
95 PRK07353 F0F1 ATP synthase sub 20.8 3.5E+02 0.0075 19.9 5.9 15 103-117 53-67 (140)
96 PLN02937 Putative isoaspartyl 20.4 82 0.0018 29.1 2.4 46 93-138 30-76 (414)
97 PRK13460 F0F1 ATP synthase sub 20.3 4E+02 0.0086 20.7 5.9 15 103-117 64-78 (173)
No 1
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=93.39 E-value=0.26 Score=35.54 Aligned_cols=37 Identities=35% Similarity=0.535 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Q 030938 96 RKLKQAEEEAVDIVREVE-KKIETVEERIEASEKEVET 132 (169)
Q Consensus 96 KklkkAEEeA~EiVkE~E-~~veaae~g~e~Aekei~~ 132 (169)
+.|.+||++|.+||.++. ........+-++|+++|+.
T Consensus 7 q~Ll~AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~~ei~~ 44 (105)
T PF03179_consen 7 QQLLEAEKEAQEIVEEARKEREQRLKQAKEEAEKEIEE 44 (105)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999977 3344455566666666554
No 2
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=88.25 E-value=1.7 Score=33.62 Aligned_cols=39 Identities=36% Similarity=0.544 Sum_probs=31.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Q 030938 93 GLRRKLKQAEEEAVDIVREVE-KKIETVEERIEASEKEVET 132 (169)
Q Consensus 93 GIRKklkkAEEeA~EiVkE~E-~~veaae~g~e~Aekei~~ 132 (169)
||. .|=.||.+|.+||.++. ....--..+.++|++||+.
T Consensus 7 GIQ-~LL~AE~eA~~IV~~AR~~r~~RLKqAK~EA~~EI~~ 46 (113)
T TIGR01147 7 GIQ-QLLQAEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEK 46 (113)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 564 45679999999999987 5566677788899999887
No 3
>PRK10132 hypothetical protein; Provisional
Probab=84.72 E-value=6.4 Score=30.01 Aligned_cols=57 Identities=16% Similarity=0.211 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhHHHHHHHH
Q 030938 94 LRRKLKQAEEEAVDIVREVEKKIETVEERIEASEKEVETTAGFGGLAQAGAVAGAELVGLLVAT 157 (169)
Q Consensus 94 IRKklkkAEEeA~EiVkE~E~~veaae~g~e~Aekei~~~~~~gglvQAGaVAGAEv~GVLVAs 157 (169)
+|.|++..-+.+++-..+.+...+.+..+.. ..++.+-..|+.=.|+.+| +|+++|.
T Consensus 46 lR~r~~~~L~~ar~~l~~~~~~~~~~~~a~~----~~~~~V~~~Pw~svgiaag---vG~llG~ 102 (108)
T PRK10132 46 ARRKAQALLKETRARMHGRTRVQQAARDAVG----CADTFVRERPWCSVGTAAA---VGIFIGA 102 (108)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH----HHHHHHHhCcHHHHHHHHH---HHHHHHH
Confidence 4444444444444444443332222222222 3346666777776676666 5666654
No 4
>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional
Probab=83.62 E-value=0.78 Score=40.22 Aligned_cols=56 Identities=21% Similarity=0.251 Sum_probs=35.3
Q ss_pred cccCCCccccccCCCCcccccccchhhHHHHHhhhhhhhhhcccccccCC--CCchhhhhH
Q 030938 39 VRNNARPVTCKAHAPKSAQALHASRRNLLFFSLTALPVLTARESASSAED--IPLFGLRRK 97 (169)
Q Consensus 39 ~~snA~~~~Cka~~~~~~~~~~~~RR~~l~llLtA~s~lt~r~~~a~A~d--IpLFGIRKk 97 (169)
..+..+++.|++..... ...+||..|.++++++.+.+-..++..|.+ --+||.-|+
T Consensus 31 ~~~~~~~~~~~~~~~~~---~~~srr~~l~~~~ga~a~~~~~~pa~aay~~~anvfg~~k~ 88 (260)
T PLN00042 31 SASRPSQVVCRAQEEDN---SAVSRRAALALLAGAAAAGAKVSPANAAYGESANVFGKPKT 88 (260)
T ss_pred CCCCCcceeeecccccc---ccccHHHHHHHHHHHHHhhcccCchhhhhcchhhccCCCCC
Confidence 34455778898854432 237999998878777665555555544443 347777665
No 5
>KOG1772 consensus Vacuolar H+-ATPase V1 sector, subunit G [Energy production and conversion]
Probab=82.29 E-value=4.1 Score=32.07 Aligned_cols=39 Identities=36% Similarity=0.477 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhc
Q 030938 97 KLKQAEEEAVDIVREVEK-KIETVEERIEASEKEVETTAG 135 (169)
Q Consensus 97 klkkAEEeA~EiVkE~E~-~veaae~g~e~Aekei~~~~~ 135 (169)
.|=.||.+|.|+|-|+.+ +..--.-+.++|++||++--.
T Consensus 10 QLLqAEK~A~e~V~~ARk~K~~RLKQAKeEA~~Eie~yr~ 49 (108)
T KOG1772|consen 10 QLLQAEKRAAEKVEEARKRKLRRLKQAKEEAEKEIEEYRS 49 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999883 555566688888888876544
No 6
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=82.09 E-value=13 Score=26.36 Aligned_cols=30 Identities=23% Similarity=0.346 Sum_probs=16.5
Q ss_pred HHHHHHHhhhcccchhhhhhhhhhhHHHHHHHH
Q 030938 125 ASEKEVETTAGFGGLAQAGAVAGAELVGLLVAT 157 (169)
Q Consensus 125 ~Aekei~~~~~~gglvQAGaVAGAEv~GVLVAs 157 (169)
.+....++.+-..|+.=-|+.+| +|+|+|.
T Consensus 60 ~~~~~~~~~V~e~P~~svgiAag---vG~llG~ 89 (94)
T PF05957_consen 60 EAAEQTEDYVRENPWQSVGIAAG---VGFLLGL 89 (94)
T ss_pred HHHHHHHHHHHHChHHHHHHHHH---HHHHHHH
Confidence 44445556666666654455454 5666553
No 7
>PRK10404 hypothetical protein; Provisional
Probab=79.10 E-value=15 Score=27.65 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=14.9
Q ss_pred HHhhhcccchhhhhhhhhhhHHHHHHHH
Q 030938 130 VETTAGFGGLAQAGAVAGAELVGLLVAT 157 (169)
Q Consensus 130 i~~~~~~gglvQAGaVAGAEv~GVLVAs 157 (169)
.++.+-..|..=.|+.+| +|+|+|.
T Consensus 72 td~yV~e~Pw~avGiaag---vGlllG~ 96 (101)
T PRK10404 72 ADDYVHEKPWQGIGVGAA---VGLVLGL 96 (101)
T ss_pred HHHHHHhCcHHHHHHHHH---HHHHHHH
Confidence 345566677665565555 6666654
No 8
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=74.67 E-value=7.6 Score=31.29 Aligned_cols=15 Identities=40% Similarity=0.629 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 030938 100 QAEEEAVDIVREVEK 114 (169)
Q Consensus 100 kAEEeA~EiVkE~E~ 114 (169)
+|+++|++|+.|+++
T Consensus 30 eA~~eAe~Ii~eA~~ 44 (198)
T PRK01558 30 EAKEEAEEIIAKAEE 44 (198)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 9
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=72.28 E-value=17 Score=25.58 Aligned_cols=17 Identities=29% Similarity=0.386 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 030938 97 KLKQAEEEAVDIVREVE 113 (169)
Q Consensus 97 klkkAEEeA~EiVkE~E 113 (169)
.|+.|..++.+|+.++.
T Consensus 14 ~l~~A~~ea~~Ii~~A~ 30 (85)
T TIGR02926 14 LIEEAEEERKQRIAEAR 30 (85)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555543
No 10
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=72.12 E-value=14 Score=28.65 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=15.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 030938 94 LRRKLKQAEEEAVDIVREVEKKIET 118 (169)
Q Consensus 94 IRKklkkAEEeA~EiVkE~E~~vea 118 (169)
.+++|+++.+++.+|+.++.+..+.
T Consensus 76 ~~~~L~~a~~ea~~ii~~a~~~a~~ 100 (174)
T PRK07352 76 AQQKLAQAQQEAERIRADAKARAEA 100 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777777775544333
No 11
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=71.55 E-value=14 Score=28.72 Aligned_cols=21 Identities=33% Similarity=0.471 Sum_probs=11.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 030938 95 RRKLKQAEEEAVDIVREVEKK 115 (169)
Q Consensus 95 RKklkkAEEeA~EiVkE~E~~ 115 (169)
+++|+++++++.+|+.++.+.
T Consensus 74 e~~l~~a~~ea~~ii~~A~~e 94 (173)
T PRK13460 74 EARLNSAKDEANAIVAEAKSD 94 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666654433
No 12
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=70.41 E-value=16 Score=28.46 Aligned_cols=21 Identities=38% Similarity=0.465 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 030938 95 RRKLKQAEEEAVDIVREVEKK 115 (169)
Q Consensus 95 RKklkkAEEeA~EiVkE~E~~ 115 (169)
+++|+++++++.+|+.++.+.
T Consensus 76 e~~L~~a~~ea~~ii~~A~~~ 96 (175)
T PRK14472 76 RELLAKADAEADKIIREGKEY 96 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666664433
No 13
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=69.32 E-value=17 Score=29.11 Aligned_cols=19 Identities=16% Similarity=0.300 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 030938 95 RRKLKQAEEEAVDIVREVE 113 (169)
Q Consensus 95 RKklkkAEEeA~EiVkE~E 113 (169)
+++|++|+.|+.+|+++++
T Consensus 62 e~~L~~Ar~EA~~Ii~~A~ 80 (154)
T PRK06568 62 NAQIKKLETLRSQMIEESN 80 (154)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666644
No 14
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=68.46 E-value=19 Score=28.88 Aligned_cols=21 Identities=14% Similarity=0.272 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 030938 98 LKQAEEEAVDIVREVEKKIET 118 (169)
Q Consensus 98 lkkAEEeA~EiVkE~E~~vea 118 (169)
+++|+++|++|.+|+++.++.
T Consensus 22 ~~eA~~~aeei~~ea~~~a~~ 42 (185)
T PRK01194 22 NDEYSKRIEKLEKECDSKIQS 42 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666655544
No 15
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=66.01 E-value=24 Score=27.45 Aligned_cols=33 Identities=36% Similarity=0.573 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 030938 98 LKQAEEEAVDIVREVEKKIETV-EERIEASEKEV 130 (169)
Q Consensus 98 lkkAEEeA~EiVkE~E~~veaa-e~g~e~Aekei 130 (169)
+.+|+.++++|+.|+++.++.. +.+.+.++++.
T Consensus 22 ~~ea~~~~~~i~~ea~~~a~~i~~~~~~~a~~e~ 55 (188)
T PRK02292 22 RAEADEEAEEIIAEAEADAEEILEDREAEAEREI 55 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666655444432 22444444433
No 16
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=65.82 E-value=25 Score=26.83 Aligned_cols=24 Identities=46% Similarity=0.541 Sum_probs=14.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 030938 94 LRRKLKQAEEEAVDIVREVEKKIE 117 (169)
Q Consensus 94 IRKklkkAEEeA~EiVkE~E~~ve 117 (169)
.+++|++++.++.+|+.++.+..+
T Consensus 62 ~~~~l~~a~~ea~~ii~~a~~~a~ 85 (159)
T PRK13461 62 NERELKNAKEEGKKIVEEYKSKAE 85 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666677777777776554433
No 17
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=64.78 E-value=29 Score=25.77 Aligned_cols=15 Identities=27% Similarity=0.448 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 030938 97 KLKQAEEEAVDIVRE 111 (169)
Q Consensus 97 klkkAEEeA~EiVkE 111 (169)
++|++|+++++++++
T Consensus 7 ~ik~aE~~~e~~L~~ 21 (103)
T PRK08404 7 EIVKAEKEAEERIEK 21 (103)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444444
No 18
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=64.57 E-value=26 Score=26.90 Aligned_cols=14 Identities=29% Similarity=0.287 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 030938 98 LKQAEEEAVDIVRE 111 (169)
Q Consensus 98 lkkAEEeA~EiVkE 111 (169)
|+++.+++.+|+.+
T Consensus 83 L~~A~~ea~~ii~~ 96 (156)
T CHL00118 83 LSKARKEAQLEITQ 96 (156)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444444444
No 19
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=64.55 E-value=27 Score=25.96 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 030938 95 RRKLKQAEEEAVDIVREVEKKI 116 (169)
Q Consensus 95 RKklkkAEEeA~EiVkE~E~~v 116 (169)
+++|.++..++.+|+.++.+..
T Consensus 53 ~~~l~~A~~ea~~i~~~a~~~a 74 (147)
T TIGR01144 53 QVILKEAKDEAQEIIENANKRG 74 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666667777776644333
No 20
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=64.48 E-value=25 Score=27.41 Aligned_cols=19 Identities=42% Similarity=0.630 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030938 97 KLKQAEEEAVDIVREVEKK 115 (169)
Q Consensus 97 klkkAEEeA~EiVkE~E~~ 115 (169)
.++.|.++|.+|+.++|..
T Consensus 33 ~i~eAr~eareiieeaE~e 51 (108)
T COG2811 33 IIKEAREEAREIIEEAEEE 51 (108)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555556666666665533
No 21
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=63.67 E-value=27 Score=28.78 Aligned_cols=27 Identities=37% Similarity=0.562 Sum_probs=16.3
Q ss_pred hhhhhHHH----HHHHHHHHHHHHHHHHHHH
Q 030938 92 FGLRRKLK----QAEEEAVDIVREVEKKIET 118 (169)
Q Consensus 92 FGIRKklk----kAEEeA~EiVkE~E~~vea 118 (169)
+|+.+.++ .+++++++|..|++..++.
T Consensus 2 ~~~e~~i~~I~~~a~eeak~I~~eA~~eae~ 32 (194)
T COG1390 2 MELEKLIKKILREAEEEAEEILEEAREEAEK 32 (194)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443 4578888888886544443
No 22
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=63.34 E-value=30 Score=25.87 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=12.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 030938 94 LRRKLKQAEEEAVDIVREVEK 114 (169)
Q Consensus 94 IRKklkkAEEeA~EiVkE~E~ 114 (169)
.+++|+++..++.+|+.++..
T Consensus 61 ~~~~l~~a~~ea~~i~~~a~~ 81 (156)
T PRK05759 61 YEAQLAEARAEAAEIIEQAKK 81 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666443
No 23
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=63.17 E-value=21 Score=25.41 Aligned_cols=13 Identities=46% Similarity=0.667 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 030938 99 KQAEEEAVDIVRE 111 (169)
Q Consensus 99 kkAEEeA~EiVkE 111 (169)
.++++++.+++++
T Consensus 61 ~~a~~ea~~i~~~ 73 (132)
T PF00430_consen 61 AEAREEAQEIIEE 73 (132)
T ss_dssp HHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444443
No 24
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=62.52 E-value=30 Score=27.89 Aligned_cols=21 Identities=33% Similarity=0.434 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 030938 97 KLKQAEEEAVDIVREVEKKIE 117 (169)
Q Consensus 97 klkkAEEeA~EiVkE~E~~ve 117 (169)
=+++|+++|.+|+.|++++.+
T Consensus 16 ~~eeA~~eA~~Ii~eA~~eAe 36 (198)
T PRK01558 16 GLEEAERLANEIILEAKEEAE 36 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467777888888887775444
No 25
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=62.23 E-value=28 Score=27.25 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 030938 95 RRKLKQAEEEAVDIVREVEKK 115 (169)
Q Consensus 95 RKklkkAEEeA~EiVkE~E~~ 115 (169)
+++|.+++.++.+|+.++.+.
T Consensus 76 e~~l~~a~~ea~~ii~~a~~~ 96 (173)
T PRK13453 76 KQKLKETQEEVQKILEDAKVQ 96 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666664433
No 26
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=62.11 E-value=26 Score=28.57 Aligned_cols=8 Identities=25% Similarity=0.721 Sum_probs=4.2
Q ss_pred cccccCCC
Q 030938 46 VTCKAHAP 53 (169)
Q Consensus 46 ~~Cka~~~ 53 (169)
++|.-..+
T Consensus 26 ~~~~~~~~ 33 (205)
T PRK06231 26 VSCTENVE 33 (205)
T ss_pred HHccCChh
Confidence 45655544
No 27
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=61.82 E-value=29 Score=27.22 Aligned_cols=9 Identities=44% Similarity=0.420 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 030938 103 EEAVDIVRE 111 (169)
Q Consensus 103 EeA~EiVkE 111 (169)
+++.+|+.+
T Consensus 93 ~ea~~Ii~~ 101 (184)
T PRK13455 93 EQADRIVAA 101 (184)
T ss_pred HHHHHHHHH
Confidence 333333333
No 28
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=61.54 E-value=37 Score=23.83 Aligned_cols=18 Identities=39% Similarity=0.708 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 030938 96 RKLKQAEEEAVDIVREVE 113 (169)
Q Consensus 96 KklkkAEEeA~EiVkE~E 113 (169)
+.++.+|++++++++++.
T Consensus 2 ~~ik~ae~~~~~~l~~A~ 19 (85)
T TIGR02926 2 EEIKKAEEDAEELIEEAE 19 (85)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 356777777777777765
No 29
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=61.19 E-value=31 Score=26.82 Aligned_cols=15 Identities=20% Similarity=0.355 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 030938 97 KLKQAEEEAVDIVRE 111 (169)
Q Consensus 97 klkkAEEeA~EiVkE 111 (169)
+|+.|+.++.+|+.+
T Consensus 70 ~L~~A~~ea~~Ii~~ 84 (167)
T PRK14475 70 EREEAERQAAAMLAA 84 (167)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444444
No 30
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=61.06 E-value=32 Score=26.34 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 030938 95 RRKLKQAEEEAVDIVREVE 113 (169)
Q Consensus 95 RKklkkAEEeA~EiVkE~E 113 (169)
+++|++|..+|.+|+.++.
T Consensus 66 e~~l~~A~~ea~~ii~~A~ 84 (164)
T PRK14473 66 EAELAKARQEAAKIVAQAQ 84 (164)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555556666665544
No 31
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=60.67 E-value=32 Score=26.01 Aligned_cols=18 Identities=28% Similarity=0.529 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 030938 99 KQAEEEAVDIVREVEKKI 116 (169)
Q Consensus 99 kkAEEeA~EiVkE~E~~v 116 (169)
++|++++.+|+.|+++..
T Consensus 4 ~eA~~ka~~I~~eA~~e~ 21 (198)
T PF01991_consen 4 EEAQEKAEEIIAEAQEEA 21 (198)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666666666644333
No 32
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=60.50 E-value=31 Score=28.66 Aligned_cols=17 Identities=53% Similarity=0.575 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 030938 97 KLKQAEEEAVDIVREVE 113 (169)
Q Consensus 97 klkkAEEeA~EiVkE~E 113 (169)
.|++|+++|.+|+.+++
T Consensus 21 iL~eA~~eA~~Il~eAk 37 (207)
T PRK01005 21 TLKPAEEEAGAIVHNAK 37 (207)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555555544
No 33
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=60.34 E-value=71 Score=24.97 Aligned_cols=58 Identities=19% Similarity=0.291 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhcccchhhhhhhhhhhHHHHHHH
Q 030938 96 RKLKQAEEEAVDIVREVEKKIETVEERI----EASEKEVETTAGFGGLAQAGAVAGAELVGLLVA 156 (169)
Q Consensus 96 KklkkAEEeA~EiVkE~E~~veaae~g~----e~Aekei~~~~~~gglvQAGaVAGAEv~GVLVA 156 (169)
++++++.+.+.-++||+.+.+.-...++ .+|...-++-+...|. |+-.|+++ +|+|++
T Consensus 37 ~e~~~lR~r~~~~Lk~~r~rl~~~~d~v~~~sk~a~~~tD~yV~e~PW-q~VGvaAa--VGlllG 98 (104)
T COG4575 37 DEAEELRSKAESALKEARDRLGDTGDAVVQRSKAAADATDDYVRENPW-QGVGVAAA--VGLLLG 98 (104)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCc-hHHHHHHH--HHHHHH
Confidence 4667777777777777665554432222 2333444566666654 54444432 455544
No 34
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=58.76 E-value=35 Score=26.83 Aligned_cols=17 Identities=41% Similarity=0.315 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 030938 97 KLKQAEEEAVDIVREVE 113 (169)
Q Consensus 97 klkkAEEeA~EiVkE~E 113 (169)
+|+++++++.+++.++.
T Consensus 84 ~L~~A~~ea~~ii~~A~ 100 (184)
T CHL00019 84 RLRQAELEADEIRVNGY 100 (184)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444455555555533
No 35
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=58.54 E-value=43 Score=24.69 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 030938 96 RKLKQAEEEAVDIVREVE 113 (169)
Q Consensus 96 KklkkAEEeA~EiVkE~E 113 (169)
++|+++..++.+|+.++.
T Consensus 64 ~~L~~a~~ea~~i~~~a~ 81 (140)
T PRK07353 64 QQLASARKQAQAVIAEAE 81 (140)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444455555555433
No 36
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=57.45 E-value=35 Score=28.12 Aligned_cols=21 Identities=5% Similarity=0.204 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 030938 95 RRKLKQAEEEAVDIVREVEKK 115 (169)
Q Consensus 95 RKklkkAEEeA~EiVkE~E~~ 115 (169)
+++|+++++++.+|+.++.+.
T Consensus 63 e~~l~~a~~ea~~i~~~A~~e 83 (246)
T TIGR03321 63 EEKNEELDQQREVLLTKAKEE 83 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345666666667776664433
No 37
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=56.56 E-value=39 Score=27.78 Aligned_cols=15 Identities=33% Similarity=0.401 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 030938 97 KLKQAEEEAVDIVRE 111 (169)
Q Consensus 97 klkkAEEeA~EiVkE 111 (169)
+|+++..++.+|+.+
T Consensus 113 ~L~~Ar~eA~~Ii~~ 127 (204)
T PRK09174 113 ELAQARAKAHSIAQA 127 (204)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444444443
No 38
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=56.27 E-value=45 Score=25.53 Aligned_cols=17 Identities=35% Similarity=0.432 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 030938 97 KLKQAEEEAVDIVREVE 113 (169)
Q Consensus 97 klkkAEEeA~EiVkE~E 113 (169)
+|.+|.+++.+|+.++.
T Consensus 68 ~l~~A~~ea~~ii~~A~ 84 (164)
T PRK14471 68 LLKEARAERDAILKEAR 84 (164)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444555555555433
No 39
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=55.58 E-value=47 Score=25.84 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 030938 97 KLKQAEEEAVDIVREVE 113 (169)
Q Consensus 97 klkkAEEeA~EiVkE~E 113 (169)
-+++|++++++|++|+.
T Consensus 11 il~~A~~ea~~il~~A~ 27 (198)
T PRK03963 11 INREAEQKIEYILEEAQ 27 (198)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555566666666544
No 40
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=55.44 E-value=33 Score=28.47 Aligned_cols=16 Identities=31% Similarity=0.507 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 030938 98 LKQAEEEAVDIVREVE 113 (169)
Q Consensus 98 lkkAEEeA~EiVkE~E 113 (169)
+++|+++|++|++|++
T Consensus 33 l~eAk~~Ae~Ii~eA~ 48 (207)
T PRK01005 33 VHNAKEQAKRIIAEAQ 48 (207)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444455555555433
No 41
>PLN00067 PsbP domain-containing protein 6; Provisional
Probab=54.54 E-value=12 Score=33.24 Aligned_cols=48 Identities=25% Similarity=0.131 Sum_probs=23.2
Q ss_pred hhccCCCCccccCccccccccCCCccccccCCC--CcccccccchhhHHHHH
Q 030938 21 MASTIPWSSLSRAPTLLRVRNNARPVTCKAHAP--KSAQALHASRRNLLFFS 70 (169)
Q Consensus 21 ~~~~~~~~~~~~~~~l~~~~snA~~~~Cka~~~--~~~~~~~~~RR~~l~ll 70 (169)
.++..||+..-+.++.......+. +|.++.. .+.......||.++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~rr~~~~~~ 52 (263)
T PLN00067 3 TASLSPLSLSFSVSSSTSASSSAS--SPLAVASSVSPRAAVVIHRRELLLGL 52 (263)
T ss_pred cccccccccccccCcccccccccc--CCccccccccccccchhHHHHHHhhh
Confidence 356778876655555443322222 2222211 11122337899997644
No 42
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=52.17 E-value=53 Score=24.40 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030938 97 KLKQAEEEAVDIVREVEKKIET 118 (169)
Q Consensus 97 klkkAEEeA~EiVkE~E~~vea 118 (169)
=|++|.++|++|+++++.+.+.
T Consensus 18 il~~A~~~a~~i~~~A~~~~e~ 39 (166)
T TIGR02499 18 ILAAARQRAEAILADAEEEAEA 39 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3678889999999988766655
No 43
>PF02093 Gag_p30: Gag P30 core shell protein; InterPro: IPR003036 P30 is essential for viral assembly []. Cleavage of P70 in vitro can be accompanied by a shift from a concentrically coiled internal strand ("immature") to a collapsed ("mature") form of the virus core [].; GO: 0019068 virion assembly; PDB: 3BP9_U 1U7K_D 2Y4Z_A 1BM4_A.
Probab=52.05 E-value=4.8 Score=34.52 Aligned_cols=22 Identities=32% Similarity=0.641 Sum_probs=0.0
Q ss_pred hhhhHHHHHH----HHHHHHHHHHHH
Q 030938 93 GLRRKLKQAE----EEAVDIVREVEK 114 (169)
Q Consensus 93 GIRKklkkAE----EeA~EiVkE~E~ 114 (169)
-|||||+|.| .--.|+|||+|+
T Consensus 179 DIrkKLq~~eg~~~~~l~~Ll~~A~k 204 (211)
T PF02093_consen 179 DIRKKLQKLEGLQGKTLSELLKEAEK 204 (211)
T ss_dssp --------------------------
T ss_pred HHHHHHHhhcCcccCCHHHHHHHHHH
Confidence 3799999997 566788988875
No 44
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=51.55 E-value=61 Score=24.69 Aligned_cols=17 Identities=59% Similarity=0.675 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 030938 97 KLKQAEEEAVDIVREVE 113 (169)
Q Consensus 97 klkkAEEeA~EiVkE~E 113 (169)
+|+++..++.+|+.++.
T Consensus 62 ~L~~A~~ea~~ii~~A~ 78 (159)
T PRK09173 62 KRKEAEKEAADIVAAAE 78 (159)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444455555555533
No 45
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=50.15 E-value=54 Score=27.55 Aligned_cols=18 Identities=11% Similarity=0.300 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 030938 96 RKLKQAEEEAVDIVREVE 113 (169)
Q Consensus 96 KklkkAEEeA~EiVkE~E 113 (169)
++++++++++.+|+.++.
T Consensus 64 ~~l~~a~~ea~~ii~~A~ 81 (250)
T PRK14474 64 QKQQSLEQQRASFMAQAQ 81 (250)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555544
No 46
>PRK15322 invasion protein OrgB; Provisional
Probab=48.91 E-value=49 Score=28.63 Aligned_cols=21 Identities=38% Similarity=0.461 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 030938 98 LKQAEEEAVDIVREVEKKIET 118 (169)
Q Consensus 98 lkkAEEeA~EiVkE~E~~vea 118 (169)
+++|.++|+||+++++++.|+
T Consensus 18 ~~qA~~kA~~ii~qA~~eaE~ 38 (210)
T PRK15322 18 EQQARRRAKRILRQAEEEAET 38 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999888776
No 47
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=48.78 E-value=51 Score=29.89 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 030938 97 KLKQAEEEAVDIVREVE 113 (169)
Q Consensus 97 klkkAEEeA~EiVkE~E 113 (169)
+|+++..|+.+|+.++.
T Consensus 61 ~L~~Ak~ea~~Ii~~A~ 77 (445)
T PRK13428 61 AVEDAKAEAARVVEEAR 77 (445)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35555566777776644
No 48
>PRK12704 phosphodiesterase; Provisional
Probab=48.09 E-value=51 Score=30.76 Aligned_cols=23 Identities=43% Similarity=0.549 Sum_probs=18.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 030938 94 LRRKLKQAEEEAVDIVREVEKKI 116 (169)
Q Consensus 94 IRKklkkAEEeA~EiVkE~E~~v 116 (169)
.++++++|+++|+++++|++.+.
T Consensus 29 a~~~l~~Ae~eAe~I~keA~~eA 51 (520)
T PRK12704 29 AEAKIKEAEEEAKRILEEAKKEA 51 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999877555
No 49
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=47.92 E-value=62 Score=26.79 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 030938 96 RKLKQAEEEAVDIVREVEKKIETV 119 (169)
Q Consensus 96 KklkkAEEeA~EiVkE~E~~veaa 119 (169)
..|.+|.++|.+|+.++++..+.-
T Consensus 44 ~~l~~Ar~eA~~Ii~~A~~~a~~~ 67 (255)
T TIGR03825 44 QILEKAEAEAAQIIEQAEAQAAAI 67 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999977655543
No 50
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=45.21 E-value=70 Score=25.92 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030938 97 KLKQAEEEAVDIVREVEKKIET 118 (169)
Q Consensus 97 klkkAEEeA~EiVkE~E~~vea 118 (169)
=|..|.++|++|+++++.+.+.
T Consensus 35 IL~~A~~qA~~Il~~Ae~eAe~ 56 (191)
T PF06188_consen 35 ILEDARQQAEQILQQAEEEAEA 56 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777788888877766555
No 51
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=44.91 E-value=64 Score=24.85 Aligned_cols=58 Identities=17% Similarity=0.273 Sum_probs=37.9
Q ss_pred cchhhhhhhhccCCCCccccCccccccccCCCccccccCCCCcccccccchhhHHHHHhhhhhh----hhhcccccccCC
Q 030938 13 TQKSSLRAMASTIPWSSLSRAPTLLRVRNNARPVTCKAHAPKSAQALHASRRNLLFFSLTALPV----LTARESASSAED 88 (169)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~snA~~~~Cka~~~~~~~~~~~~RR~~l~llLtA~s~----lt~r~~~a~A~d 88 (169)
....++..-..+|.|+++ .|-+.++| -|..+|.++.+.+.+ +.....+..|.|
T Consensus 14 ~~~~t~~~A~ksi~~~df----------~~~~~iPC-------------fR~slL~Gi~~G~~vG~~~fl~~~~~~~A~n 70 (118)
T PF12597_consen 14 QERPTLSDAVKSIKLSDF----------RNVHKIPC-------------FRDSLLYGIAGGFGVGGLRFLFTSNPRKAAN 70 (118)
T ss_pred CCCCcHHHHHHhcCHHHH----------hHHhcCCc-------------HHHHHHHHHHHHHHHHhhhhcccCCCccchh
Confidence 345577777788888766 56678888 577888877665533 223446677777
Q ss_pred CCchh
Q 030938 89 IPLFG 93 (169)
Q Consensus 89 IpLFG 93 (169)
+.+.|
T Consensus 71 wavgs 75 (118)
T PF12597_consen 71 WAVGS 75 (118)
T ss_pred hhhHH
Confidence 66544
No 52
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=40.74 E-value=1.1e+02 Score=24.63 Aligned_cols=22 Identities=36% Similarity=0.376 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030938 97 KLKQAEEEAVDIVREVEKKIET 118 (169)
Q Consensus 97 klkkAEEeA~EiVkE~E~~vea 118 (169)
=+++|++++++|..|+++.++.
T Consensus 10 I~~ea~~~a~~I~~eA~~~aee 31 (185)
T PRK01194 10 IEKSREEKKKEINDEYSKRIEK 31 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888766554
No 53
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=40.68 E-value=89 Score=25.17 Aligned_cols=25 Identities=48% Similarity=0.647 Sum_probs=19.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 030938 94 LRRKLKQAEEEAVDIVREVEKKIET 118 (169)
Q Consensus 94 IRKklkkAEEeA~EiVkE~E~~vea 118 (169)
.+++++.|+++|+.|+++++...+.
T Consensus 25 ~~~~~~~A~~~A~~i~~~A~~eAe~ 49 (201)
T PF12072_consen 25 NRKKLEQAEKEAEQILEEAEREAEA 49 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888999999999998766665
No 54
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=40.24 E-value=1.1e+02 Score=23.93 Aligned_cols=17 Identities=35% Similarity=0.423 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 030938 97 KLKQAEEEAVDIVREVE 113 (169)
Q Consensus 97 klkkAEEeA~EiVkE~E 113 (169)
-+++|.++|.+++.|++
T Consensus 22 il~~A~~~a~~i~~~a~ 38 (198)
T PRK03963 22 ILEEAQKEAEKIKEEAR 38 (198)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555543
No 55
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=39.75 E-value=1.2e+02 Score=22.48 Aligned_cols=18 Identities=33% Similarity=0.647 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 030938 96 RKLKQAEEEAVDIVREVE 113 (169)
Q Consensus 96 KklkkAEEeA~EiVkE~E 113 (169)
+.|++|..++.+|+.++.
T Consensus 17 ~~L~~A~~Ea~~Ii~~Ak 34 (103)
T PRK08404 17 ERIEKAKEEAKKIIRKAK 34 (103)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356666666666666633
No 56
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=39.34 E-value=1.1e+02 Score=23.85 Aligned_cols=15 Identities=33% Similarity=0.656 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHH
Q 030938 97 KLKQAEEEAVDIVRE 111 (169)
Q Consensus 97 klkkAEEeA~EiVkE 111 (169)
+|+++.+++.+|+..
T Consensus 66 ~l~~Ar~~a~~Ii~~ 80 (161)
T COG0711 66 ELEEAREQASEIIEQ 80 (161)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444555555544
No 57
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=38.27 E-value=1.4e+02 Score=23.28 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 030938 98 LKQAEEEAVDIVREVEKKIET 118 (169)
Q Consensus 98 lkkAEEeA~EiVkE~E~~vea 118 (169)
+.++++++.+|..|+++.++.
T Consensus 11 ~~~a~~e~~~I~~ea~~~~~~ 31 (188)
T PRK02292 11 RDEARARASEIRAEADEEAEE 31 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777776655433
No 58
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=37.60 E-value=96 Score=28.93 Aligned_cols=22 Identities=41% Similarity=0.495 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 030938 95 RRKLKQAEEEAVDIVREVEKKI 116 (169)
Q Consensus 95 RKklkkAEEeA~EiVkE~E~~v 116 (169)
++.+++|+.+|+++.+|++.+.
T Consensus 24 ~~~l~~Ae~eAe~i~keA~~eA 45 (514)
T TIGR03319 24 EKKLGSAEELAKRIIEEAKKEA 45 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888988888877544
No 59
>PRK06937 type III secretion system protein; Reviewed
Probab=37.45 E-value=1.1e+02 Score=24.51 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030938 97 KLKQAEEEAVDIVREVEKKIETV 119 (169)
Q Consensus 97 klkkAEEeA~EiVkE~E~~veaa 119 (169)
-|++|.++|++|..+++++.+.+
T Consensus 35 il~~A~~~A~~i~~~A~~~~e~~ 57 (204)
T PRK06937 35 LVEAARQRAEEIEAEAQEVYEQQ 57 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888877655543
No 60
>TIGR01845 outer_NodT efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined.
Probab=37.08 E-value=1.3e+02 Score=25.24 Aligned_cols=18 Identities=33% Similarity=0.591 Sum_probs=11.4
Q ss_pred CCCCch--hhhh-HHHHHHHH
Q 030938 87 EDIPLF--GLRR-KLKQAEEE 104 (169)
Q Consensus 87 ~dIpLF--GIRK-klkkAEEe 104 (169)
-.|||| |-++ ++++++..
T Consensus 335 l~~Pif~~g~~~a~~~~a~a~ 355 (454)
T TIGR01845 335 LALPIFDGGSLRAALDSAKAT 355 (454)
T ss_pred hccccccccHHHHHHHHHHHH
Confidence 458998 5443 77766533
No 61
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=35.66 E-value=1.5e+02 Score=23.27 Aligned_cols=16 Identities=31% Similarity=0.383 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHhhh
Q 030938 119 VEERIEASEKEVETTA 134 (169)
Q Consensus 119 ae~g~e~Aekei~~~~ 134 (169)
+++-+..+++++....
T Consensus 71 a~eI~~~ae~~~~~~~ 86 (108)
T COG2811 71 AEEILAEAEKEASAIL 86 (108)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444445555544443
No 62
>cd04702 ASRGL1_like ASRGL1_like domains, a subfamily of the L-Asparaginase type 2-like enzymes. The wider family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. The proenzymes undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue. ASRGL1, or asparaginase-like 1, has been cloned from mammalian testis cDNA libraries. It has been identified as a sperm antigen that may induce the production of autoantibodies following obstruction of the male reproductive tract, e.g. vasectomy.
Probab=34.57 E-value=39 Score=29.57 Aligned_cols=46 Identities=20% Similarity=0.311 Sum_probs=34.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 030938 93 GLRRKLKQAEEEAVDIVREVEKKIETVEERIEASEKEVETTAGFGG 138 (169)
Q Consensus 93 GIRKklkkAEEeA~EiVkE~E~~veaae~g~e~Aekei~~~~~~gg 138 (169)
..|+.|+++-+++.+.++.....+++++.++..-|..--.-+|+|+
T Consensus 20 ~~~~~~~~a~~~~~~~L~~g~saldAv~~av~~lEd~p~fnaG~Gs 65 (261)
T cd04702 20 EKIAGVKAAAEAGYKVLEQGGSALDAVEAAVRVMEDDPIFNAGYGS 65 (261)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhCCCCCCccCc
Confidence 3456788888889999988888899999988877764444455533
No 63
>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification. ; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....
Probab=33.10 E-value=1e+02 Score=24.78 Aligned_cols=30 Identities=27% Similarity=0.405 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030938 95 RRKLKQAEEEAVDIVREVEKKIETVEERIE 124 (169)
Q Consensus 95 RKklkkAEEeA~EiVkE~E~~veaae~g~e 124 (169)
++-|+++.++|++|+++....+++....+-
T Consensus 171 ~~lL~~a~~~a~~iL~~~r~~l~~la~~Ll 200 (213)
T PF01434_consen 171 RKLLEEAYARAKEILEENREALEALAEALL 200 (213)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 455677788888888888888887666554
No 64
>PRK02542 photosystem I assembly protein Ycf4; Provisional
Probab=32.38 E-value=34 Score=29.09 Aligned_cols=26 Identities=27% Similarity=0.516 Sum_probs=22.1
Q ss_pred ccCCCCchhhhh--HHHHHHHHHHHHHH
Q 030938 85 SAEDIPLFGLRR--KLKQAEEEAVDIVR 110 (169)
Q Consensus 85 ~A~dIpLFGIRK--klkkAEEeA~EiVk 110 (169)
..+||||-++-. .|.+.|++|.|+.|
T Consensus 152 g~~~IPLTrig~pl~l~eiE~qAaeLA~ 179 (188)
T PRK02542 152 GRRDIPLTRVGQPLPLAELENQGAELAR 179 (188)
T ss_pred CCCcCCcccCCCCCCHHHHHHHHHHHHH
Confidence 467899988866 88999999999876
No 65
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=32.33 E-value=1.1e+02 Score=23.56 Aligned_cols=29 Identities=34% Similarity=0.476 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030938 96 RKLKQAEEEAVDIVREVEKKIETVEERIE 124 (169)
Q Consensus 96 KklkkAEEeA~EiVkE~E~~veaae~g~e 124 (169)
+.+++++++=++.|+|+|.-++.+...+.
T Consensus 111 ~E~~~~~~el~~~v~e~e~ll~~v~~~i~ 139 (144)
T PF11221_consen 111 EENEEAEEELQEAVKEAEELLKQVQELIR 139 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555556666666655555555544
No 66
>CHL00036 ycf4 photosystem I assembly protein Ycf4
Probab=31.90 E-value=35 Score=28.91 Aligned_cols=27 Identities=26% Similarity=0.450 Sum_probs=22.4
Q ss_pred cccCCCCchhhhh--HHHHHHHHHHHHHH
Q 030938 84 SSAEDIPLFGLRR--KLKQAEEEAVDIVR 110 (169)
Q Consensus 84 a~A~dIpLFGIRK--klkkAEEeA~EiVk 110 (169)
-..+||||-++-. .|.+.|++|.|+.|
T Consensus 147 kg~~~IPLTrig~pl~l~eiE~qAaeLA~ 175 (184)
T CHL00036 147 KGQRDIPLTRTGEPLTLREIEQKAAELAY 175 (184)
T ss_pred cCCCcCCcccCCCCCCHHHHHHHHHHHHH
Confidence 3467899988866 88999999999876
No 67
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=31.16 E-value=46 Score=19.55 Aligned_cols=13 Identities=38% Similarity=0.278 Sum_probs=9.4
Q ss_pred cchhhHHHHHhhh
Q 030938 61 ASRRNLLFFSLTA 73 (169)
Q Consensus 61 ~~RR~~l~llLtA 73 (169)
.+||++|-..+.+
T Consensus 2 ~sRR~fLk~~~a~ 14 (26)
T PF10518_consen 2 LSRRQFLKGGAAA 14 (26)
T ss_pred CcHHHHHHHHHHH
Confidence 4899998855443
No 68
>cd04512 Ntn_Asparaginase_2_like Ntn-hydrolase superfamily, L-Asparaginase type 2-like enzymes. This family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoprotein. Taspase1 catalyzes the cleavage of the Mix Lineage Leukemia (MLL) nuclear protein and transcription factor TFIIA. L-Asparaginase type 2 hydrolyzes L-asparagine to L-aspartate and ammonia. The proenzymes of this family undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue.
Probab=29.93 E-value=57 Score=28.27 Aligned_cols=46 Identities=20% Similarity=0.344 Sum_probs=33.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 030938 93 GLRRKLKQAEEEAVDIVREVEKKIETVEERIEASEKEVETTAGFGG 138 (169)
Q Consensus 93 GIRKklkkAEEeA~EiVkE~E~~veaae~g~e~Aekei~~~~~~gg 138 (169)
..|+-|+++-+++.+.++.....+++++.++..-|..--.-+|+|+
T Consensus 17 ~~~~~l~~a~~~~~~~l~~g~saldAv~~av~~lEd~p~~NaG~Gs 62 (248)
T cd04512 17 EYKAFLRRAAQEGWKVLQKGGSALDAVEAAVRLLEDSPLFNAGYGS 62 (248)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCccCc
Confidence 3556678888888899988888888888888776664334556544
No 69
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=29.64 E-value=94 Score=21.45 Aligned_cols=27 Identities=37% Similarity=0.653 Sum_probs=12.1
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 030938 103 EEAVDIVRE----VEKKIETVEERIEASEKE 129 (169)
Q Consensus 103 EeA~EiVkE----~E~~veaae~g~e~Aeke 129 (169)
+||+||+.| .|+++|-...-|++-++.
T Consensus 4 ~EAkelLqe~~d~IEqkiedid~qIaeLe~K 34 (46)
T PF08946_consen 4 AEAKELLQEHYDNIEQKIEDIDEQIAELEAK 34 (46)
T ss_dssp -----------THHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHhHHHHHHHHHHHHHH
Confidence 589999999 778888777666655543
No 70
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=28.83 E-value=2.1e+02 Score=21.56 Aligned_cols=15 Identities=47% Similarity=0.603 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHH
Q 030938 99 KQAEEEAVDIVREVE 113 (169)
Q Consensus 99 kkAEEeA~EiVkE~E 113 (169)
++|+++++.++.+++
T Consensus 15 ~eA~~e~~~i~~~~~ 29 (198)
T PF01991_consen 15 AEAQEEAEKILEEAE 29 (198)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555666555544
No 71
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=28.23 E-value=1.9e+02 Score=24.98 Aligned_cols=34 Identities=29% Similarity=0.519 Sum_probs=19.6
Q ss_pred hhHHHHH-HHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 030938 95 RRKLKQA-EEEAVDIVREVE-KKIETVEERIEASEK 128 (169)
Q Consensus 95 RKklkkA-EEeA~EiVkE~E-~~veaae~g~e~Aek 128 (169)
++|+++. +++.+++.|+.+ +..|.+.+-.++..+
T Consensus 257 ~~K~~k~R~~~~~~~~K~~~~~r~E~~~~~k~e~kr 292 (321)
T PF07946_consen 257 KKKAKKNREEEEEKILKEAHQERQEEAQEKKEEKKR 292 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 577778888855 555555554444443
No 72
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=27.86 E-value=1.6e+02 Score=28.76 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccc
Q 030938 114 KKIETVEERIEASEKEVETTAGFG 137 (169)
Q Consensus 114 ~~veaae~g~e~Aekei~~~~~~g 137 (169)
|++|-...+++.||+|++.-.+.-
T Consensus 309 kelE~lR~~L~kAEkele~nS~ws 332 (575)
T KOG4403|consen 309 KELEQLRVALEKAEKELEANSSWS 332 (575)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCC
Confidence 678889999999999999886653
No 73
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=27.81 E-value=2.2e+02 Score=20.22 Aligned_cols=8 Identities=38% Similarity=0.526 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 030938 104 EAVDIVRE 111 (169)
Q Consensus 104 eA~EiVkE 111 (169)
+++++.+|
T Consensus 48 ea~~~~~e 55 (132)
T PF00430_consen 48 EAEQLLAE 55 (132)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 74
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=26.38 E-value=1.6e+02 Score=24.59 Aligned_cols=6 Identities=50% Similarity=1.132 Sum_probs=3.6
Q ss_pred CCCCcc
Q 030938 25 IPWSSL 30 (169)
Q Consensus 25 ~~~~~~ 30 (169)
|||+.+
T Consensus 48 I~~~~i 53 (176)
T PF12999_consen 48 IPFSQI 53 (176)
T ss_pred ecHHHc
Confidence 666654
No 75
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=26.20 E-value=2.6e+02 Score=21.70 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 030938 103 EEAVDIVREVEKKIET 118 (169)
Q Consensus 103 EeA~EiVkE~E~~vea 118 (169)
++|.+...|.++.++.
T Consensus 66 ~eA~~~~~e~e~~L~~ 81 (175)
T PRK14472 66 DEAEAILRKNRELLAK 81 (175)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555554444433
No 76
>PRK09098 type III secretion system protein HrpB; Validated
Probab=25.07 E-value=2.1e+02 Score=24.05 Aligned_cols=20 Identities=30% Similarity=0.277 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 030938 96 RKLKQAEEEAVDIVREVEKK 115 (169)
Q Consensus 96 KklkkAEEeA~EiVkE~E~~ 115 (169)
+-|++|.++|++|+.++.+.
T Consensus 43 ~ila~Ar~~A~~Il~~A~~~ 62 (233)
T PRK09098 43 AVLAAARARAERIVAEARAQ 62 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777775533
No 77
>PRK00106 hypothetical protein; Provisional
Probab=24.53 E-value=2e+02 Score=27.42 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030938 98 LKQAEEEAVDIVREVEKKI 116 (169)
Q Consensus 98 lkkAEEeA~EiVkE~E~~v 116 (169)
+++|+.+|+++.+|++.+.
T Consensus 48 leeAe~eAe~I~keA~~EA 66 (535)
T PRK00106 48 RGKAERDAEHIKKTAKRES 66 (535)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4667777777777766444
No 78
>PRK13452 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=24.44 E-value=1.8e+02 Score=22.81 Aligned_cols=53 Identities=17% Similarity=0.337 Sum_probs=31.4
Q ss_pred ccccCCCCchhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhcccch
Q 030938 83 ASSAEDIPLFGLRRKLKQAEEEAVDIVRE---VEKKIETVEERIEASEKEVETTAGFGGL 139 (169)
Q Consensus 83 ~a~A~dIpLFGIRKklkkAEEeA~EiVkE---~E~~veaae~g~e~Aekei~~~~~~ggl 139 (169)
+-...||=+-=. +++-+.|++..++ .....+.++..+..|...+...-..+||
T Consensus 84 ae~~~eID~~~a----e~a~~~Ae~~L~~~~~~~~~~~~a~~~L~rA~~Rl~~~~~~~~~ 139 (145)
T PRK13452 84 MERAENLNQAEA----EKARARAKEVLKNPDASKLDIEAANKRLKEADARLKALNSSNGL 139 (145)
T ss_pred eeccccCCHHHH----HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 334566765444 4444455555544 2345666777888888777766666665
No 79
>PF02392 Ycf4: Ycf4; InterPro: IPR003359 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA (IPR005137 from INTERPRO) [], Ycf3 [, ], and Ycf4 []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions. ; GO: 0015979 photosynthesis, 0009522 photosystem I, 0009579 thylakoid, 0016021 integral to membrane
Probab=24.36 E-value=56 Score=27.52 Aligned_cols=26 Identities=35% Similarity=0.593 Sum_probs=22.3
Q ss_pred ccCCCCchhhhh--HHHHHHHHHHHHHH
Q 030938 85 SAEDIPLFGLRR--KLKQAEEEAVDIVR 110 (169)
Q Consensus 85 ~A~dIpLFGIRK--klkkAEEeA~EiVk 110 (169)
..+||||-.+-. .+.+.|++|.|+.|
T Consensus 145 ~~~~IPLTrig~~~~l~eiE~~aaeLAr 172 (180)
T PF02392_consen 145 GQRDIPLTRIGEPLTLSEIEEKAAELAR 172 (180)
T ss_pred CCcccCCccCCCCCCHHHHHHHHHHHHH
Confidence 467899988877 89999999999876
No 80
>PLN02372 violaxanthin de-epoxidase
Probab=24.05 E-value=1.7e+02 Score=28.01 Aligned_cols=31 Identities=32% Similarity=0.525 Sum_probs=16.8
Q ss_pred hhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 030938 94 LRRKLKQAE----EEAVDIVREVEKKIETVEERIE 124 (169)
Q Consensus 94 IRKklkkAE----EeA~EiVkE~E~~veaae~g~e 124 (169)
|-|++++-| +|+.+|++|.|++++.+++..+
T Consensus 366 l~~~~e~~e~~i~~e~~~~~~e~~~~v~~~~~~~~ 400 (455)
T PLN02372 366 LEKDVEEGEKTIVKEARQIEEELEKEVEKLGKEEE 400 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555544 4555566666666655554433
No 81
>KOG1593 consensus Asparaginase [Amino acid transport and metabolism]
Probab=23.94 E-value=79 Score=29.15 Aligned_cols=41 Identities=27% Similarity=0.294 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhcccc
Q 030938 98 LKQAEEEAVDIVREVEKKIETVEERIEASEK-EVETTAGFGG 138 (169)
Q Consensus 98 lkkAEEeA~EiVkE~E~~veaae~g~e~Aek-ei~~~~~~gg 138 (169)
.++|.++|-.++.-......++.+|+...|+ +-+..+|+||
T Consensus 36 F~~A~~~Awral~~g~~~~~avveGcs~CE~lqCd~tVGyGG 77 (349)
T KOG1593|consen 36 FKEATKAAWRALLLGGSARFAVVEGCSMCEKLQCDGTVGYGG 77 (349)
T ss_pred hhHHHHHHHHHHHhCCchHHHHHHHHHHHHHhccCCcccCCC
Confidence 4788889999999888899999999999998 6778888765
No 82
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=23.54 E-value=3.3e+02 Score=21.90 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=12.6
Q ss_pred hhhHHHHHH---HHHHHHHHHHHHH
Q 030938 94 LRRKLKQAE---EEAVDIVREVEKK 115 (169)
Q Consensus 94 IRKklkkAE---EeA~EiVkE~E~~ 115 (169)
|+..|++|| ++|+++..|.++.
T Consensus 40 I~~~Ld~Ae~~r~eA~~l~~e~e~~ 64 (154)
T PRK06568 40 VQEKVLKAEKLKEDAALLFEQTNAQ 64 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666664 5666666664433
No 83
>cd04701 Asparaginase_2 L-Asparaginase type 2. L-Asparaginase hydrolyzes L-asparagine to L-aspartate and ammonia. The proenzyme undergoes an autoproteolytic cleavage into alpha and beta subunits to expose a threonine residue which becomes the N-terminal residue of the beta subunit. The threonine residue plays a central role in hydrolase activity. Some asparaginases can also hydrolyze L-glutamine and are termed glutaminase-asparaginase. This is a member of the Ntn-hydrolase superfamily.
Probab=23.51 E-value=83 Score=27.40 Aligned_cols=46 Identities=20% Similarity=0.219 Sum_probs=32.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 030938 93 GLRRKLKQAEEEAVDIVREVEKKIETVEERIEASEKEVETTAGFGG 138 (169)
Q Consensus 93 GIRKklkkAEEeA~EiVkE~E~~veaae~g~e~Aekei~~~~~~gg 138 (169)
..|+-|+++-+++.++++.....+++++.++..-|..-..-+|+|+
T Consensus 23 ~~~~~l~~al~~~~~~L~~g~saldAv~~av~~lEd~p~fNaG~Gs 68 (260)
T cd04701 23 AYRAALRAALEAGHAVLAAGGSALDAVVAAVRLLEDSPLFNAGKGA 68 (260)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhCCCCCCccCc
Confidence 3455677788888888888888888888888777764444455533
No 84
>PLN02956 PSII-Q subunit
Probab=23.51 E-value=2.1e+02 Score=24.31 Aligned_cols=60 Identities=23% Similarity=0.115 Sum_probs=30.0
Q ss_pred cchhhHHHHHhhhhhhhhhc-ccccccCCCCchhhhhHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 030938 61 ASRRNLLFFSLTALPVLTAR-ESASSAEDIPLFGLRRKL-KQAEEEAVDIVREVEKKIETVEE 121 (169)
Q Consensus 61 ~~RR~~l~llLtA~s~lt~r-~~~a~A~dIpLFGIRKkl-kkAEEeA~EiVkE~E~~veaae~ 121 (169)
..||+... +++.+.+|.++ +++.+..+-.=|++|=-. ++--|||+.=+||-.+++...+.
T Consensus 40 ~~~rr~~~-~~~~~~~~~~~~~~~~~~~~a~~f~~~~~~p~~speeA~ar~k~~A~~l~~LK~ 101 (185)
T PLN02956 40 SISRRRGA-LAAVAGVLLAQLEASFNVAIAFGFDLRLTAPERTVEEAESGVRGHAENLLRVKA 101 (185)
T ss_pred chhhHHHH-HHHHHHHHHhhhccccchhhccccceeecCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45555544 44445556666 444444555567766411 22235555555654444444443
No 85
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=22.83 E-value=3.3e+02 Score=20.30 Aligned_cols=11 Identities=18% Similarity=-0.043 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 030938 103 EEAVDIVREVE 113 (169)
Q Consensus 103 EeA~EiVkE~E 113 (169)
++|.+...|.+
T Consensus 52 ~~a~~~~~e~~ 62 (156)
T PRK05759 52 KELELAQAKYE 62 (156)
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 86
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=22.68 E-value=2e+02 Score=26.38 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030938 106 VDIVREVEKKIETVEERIEA 125 (169)
Q Consensus 106 ~EiVkE~E~~veaae~g~e~ 125 (169)
.=.+||+.|+|.--+..||+
T Consensus 116 QLALKEARkEIkQLkQvieT 135 (305)
T PF15290_consen 116 QLALKEARKEIKQLKQVIET 135 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 87
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=22.65 E-value=2.7e+02 Score=19.28 Aligned_cols=34 Identities=15% Similarity=0.341 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030938 95 RRKLKQAEEEAVDIVREVEKKIETVEERIEASEK 128 (169)
Q Consensus 95 RKklkkAEEeA~EiVkE~E~~veaae~g~e~Aek 128 (169)
++.+++.+++..++.+|.+.-+..+..-.+....
T Consensus 32 ~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~ 65 (90)
T PF06103_consen 32 NKTIDTLQEQVDPITKEINDLLHNTNELLEDVNE 65 (90)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444577777777766655555554444333
No 88
>PRK10884 SH3 domain-containing protein; Provisional
Probab=22.25 E-value=4e+02 Score=22.21 Aligned_cols=11 Identities=36% Similarity=0.546 Sum_probs=5.2
Q ss_pred hhhhhhhhhhh
Q 030938 139 LAQAGAVAGAE 149 (169)
Q Consensus 139 lvQAGaVAGAE 149 (169)
+..-|.|+|+.
T Consensus 174 f~~Gg~v~~~G 184 (206)
T PRK10884 174 FMYGGGVAGIG 184 (206)
T ss_pred HHHchHHHHHH
Confidence 34445555543
No 89
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=22.01 E-value=3.5e+02 Score=20.96 Aligned_cols=15 Identities=20% Similarity=0.419 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 030938 103 EEAVDIVREVEKKIE 117 (169)
Q Consensus 103 EeA~EiVkE~E~~ve 117 (169)
++|++...|.++.++
T Consensus 67 ~ea~~~~~~~~~~L~ 81 (174)
T PRK07352 67 RQAAQALAEAQQKLA 81 (174)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444443333
No 90
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=21.94 E-value=3.5e+02 Score=22.31 Aligned_cols=11 Identities=45% Similarity=0.480 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 030938 103 EEAVDIVREVE 113 (169)
Q Consensus 103 EeA~EiVkE~E 113 (169)
++++.+..|+.
T Consensus 28 ~eae~i~~ea~ 38 (194)
T COG1390 28 EEAEKIKEEAK 38 (194)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 91
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=21.90 E-value=1.9e+02 Score=26.46 Aligned_cols=15 Identities=20% Similarity=0.381 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 030938 97 KLKQAEEEAVDIVRE 111 (169)
Q Consensus 97 klkkAEEeA~EiVkE 111 (169)
++...+|+-..++++
T Consensus 123 ~v~~l~e~I~~~l~~ 137 (319)
T KOG0796|consen 123 KVHELEEKIGKLLEK 137 (319)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444444
No 92
>PLN02689 Bifunctional isoaspartyl peptidase/L-asparaginase
Probab=21.81 E-value=97 Score=27.64 Aligned_cols=57 Identities=21% Similarity=0.289 Sum_probs=39.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc------------------hhhhhhhhhhh
Q 030938 93 GLRRKLKQAEEEAVDIVREVEKKIETVEERIEASEKEVETTAGFGG------------------LAQAGAVAGAE 149 (169)
Q Consensus 93 GIRKklkkAEEeA~EiVkE~E~~veaae~g~e~Aekei~~~~~~gg------------------lvQAGaVAGAE 149 (169)
..|+.|++|-+++-+++++....+++++.++..-|..=-.-+|.|+ -..+|+|++.+
T Consensus 26 ~~~~~l~~al~~g~~~L~~g~saldAV~~av~~lEd~p~fnAG~Gs~~~~dG~velDA~iMdG~~~~~GAV~~v~ 100 (318)
T PLN02689 26 EAEAALRRCLDLGIAALRSSLPALDVVELVVRELENDPLFNAGRGSVLTEDGTVEMEASIMDGRTRRCGAVSGLT 100 (318)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhCCCCCCccCcCCCCCCCEEEEeEEEeCCCCceEEEeecC
Confidence 3456678888888888888888888988888877764333445432 24677777655
No 93
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=21.42 E-value=2.2e+02 Score=25.51 Aligned_cols=32 Identities=19% Similarity=0.338 Sum_probs=24.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030938 94 LRRKLKQAEEEAVDIVREVEKKIETVEERIEA 125 (169)
Q Consensus 94 IRKklkkAEEeA~EiVkE~E~~veaae~g~e~ 125 (169)
+++-|+++.++|++++++....+++....+-+
T Consensus 450 v~~lL~~a~~ra~~lL~~~~~~l~~la~~Ll~ 481 (495)
T TIGR01241 450 VKRIIEEAYKRAKQILTENRDELELLAKALLE 481 (495)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34566788888888888888888887666654
No 94
>COG1446 Asparaginase [Amino acid transport and metabolism]
Probab=21.38 E-value=1e+02 Score=27.96 Aligned_cols=66 Identities=27% Similarity=0.350 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHhhhcccchhhhhhhhhhhHH--HHH
Q 030938 95 RRKLKQAEEEAVDIVREVEKKIETVEERIEASEK------------------EVETTAGFGGLAQAGAVAGAELV--GLL 154 (169)
Q Consensus 95 RKklkkAEEeA~EiVkE~E~~veaae~g~e~Aek------------------ei~~~~~~gglvQAGaVAGAEv~--GVL 154 (169)
|+.|..+-++.-...++....++++.+++.--|. |++..+=.|...+||+|++-+-+ =|+
T Consensus 24 ~~~l~~a~~ag~~~l~~g~sALDAVv~Av~~mEd~p~fNAG~GSv~~~DG~vemDA~iMdG~~~~aGaVa~v~~vk~Pi~ 103 (307)
T COG1446 24 KETLSAAVEAGYQLLSAGGSALDAVVEAVRVLEDSPLFNAGTGSVLNIDGKVEMDASIMDGATLRAGAVAAVEGVKNPIL 103 (307)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhCCCccCccccccccCCeEEEeeeeeeccccccceeeehhhccCHHH
Confidence 4556666666666777777888888877764443 33333334667899999998866 455
Q ss_pred HHHHhh
Q 030938 155 VATSVV 160 (169)
Q Consensus 155 VAsSVV 160 (169)
+|--|.
T Consensus 104 ~Ar~Vm 109 (307)
T COG1446 104 AARAVM 109 (307)
T ss_pred HHHHHH
Confidence 555444
No 95
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=20.85 E-value=3.5e+02 Score=19.85 Aligned_cols=15 Identities=20% Similarity=0.333 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 030938 103 EEAVDIVREVEKKIE 117 (169)
Q Consensus 103 EeA~EiVkE~E~~ve 117 (169)
++|++...|.++.+.
T Consensus 53 ~ea~~~~~~~e~~L~ 67 (140)
T PRK07353 53 AEAEKLEAQYEQQLA 67 (140)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444443333
No 96
>PLN02937 Putative isoaspartyl peptidase/L-asparaginase
Probab=20.35 E-value=82 Score=29.12 Aligned_cols=46 Identities=30% Similarity=0.390 Sum_probs=34.2
Q ss_pred hhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccc
Q 030938 93 GLRRKLKQAEEEAVDIVREV-EKKIETVEERIEASEKEVETTAGFGG 138 (169)
Q Consensus 93 GIRKklkkAEEeA~EiVkE~-E~~veaae~g~e~Aekei~~~~~~gg 138 (169)
..|+.+++|-+++.+++++. ...+++++.++..-|..=-.-+|+|+
T Consensus 30 ~~~~~l~~A~~aa~~~L~~g~gsalDAV~aAv~~LEd~p~fNAG~Gs 76 (414)
T PLN02937 30 ALRSAMRRACLAAAAILRQGSGGCIDAVSAAIQVLEDDPSTNAGRGS 76 (414)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCCCccCc
Confidence 35667888888999999988 78888888888877764334566533
No 97
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=20.29 E-value=4e+02 Score=20.73 Aligned_cols=15 Identities=20% Similarity=0.434 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 030938 103 EEAVDIVREVEKKIE 117 (169)
Q Consensus 103 EeA~EiVkE~E~~ve 117 (169)
++|++...|.++.+.
T Consensus 64 ~eA~~~~~e~e~~l~ 78 (173)
T PRK13460 64 LEAEALLKDYEARLN 78 (173)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555443333
Done!