Query 030938
Match_columns 169
No_of_seqs 14 out of 16
Neff 2.1
Searched_HMMs 29240
Date Mon Mar 25 10:33:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030938.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030938hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4efa_G V-type proton ATPase su 92.0 0.38 1.3E-05 36.1 6.1 39 93-132 11-50 (119)
2 2k6i_A Uncharacterized protein 91.7 0.22 7.5E-06 34.1 4.2 40 88-127 11-51 (56)
3 3v6i_A V-type ATP synthase sub 75.8 6 0.00021 29.6 5.7 22 97-118 18-39 (187)
4 1l2p_A ATP synthase B chain; a 68.5 16 0.00056 22.9 5.7 20 96-115 2-21 (61)
5 4efa_E V-type proton ATPase su 61.9 17 0.00057 28.2 5.7 20 98-117 25-44 (233)
6 2kk7_A V-type ATP synthase sub 58.9 13 0.00044 23.9 3.9 21 97-117 15-35 (52)
7 2kk7_A V-type ATP synthase sub 53.7 35 0.0012 21.8 5.3 18 98-115 27-44 (52)
8 3v6i_A V-type ATP synthase sub 50.0 36 0.0012 25.3 5.7 20 99-118 9-28 (187)
9 3err_A Fusion protein of micro 47.3 35 0.0012 30.5 6.0 61 94-155 33-101 (536)
10 1lyp_A CAP18; lipopolysacchari 46.6 27 0.00093 21.5 3.7 25 93-117 1-25 (32)
11 4gdv_A L-asparaginase; NTN enz 45.3 11 0.00037 32.0 2.4 45 94-138 25-69 (310)
12 2gez_A L-asparaginase alpha su 44.9 14 0.00047 29.6 2.8 46 94-139 30-75 (195)
13 1k2x_A Putative L-asparaginase 43.2 15 0.00052 28.8 2.8 45 95-139 28-72 (177)
14 2dm9_A V-type ATP synthase sub 40.4 5.9 0.0002 28.5 0.0 15 99-113 24-38 (198)
15 3v6i_B V-type ATP synthase, su 36.0 39 0.0013 25.5 3.9 18 96-113 31-48 (105)
16 3c17_A L-asparaginase precurso 35.2 23 0.00079 30.1 2.8 46 94-139 27-72 (320)
17 2k6i_A Uncharacterized protein 33.5 49 0.0017 22.4 3.7 17 97-113 31-47 (56)
18 2kru_A Light-independent proto 30.9 26 0.00087 24.0 2.0 16 87-103 15-30 (63)
19 2l09_A ASR4154 protein; proto- 30.0 29 0.00099 23.7 2.1 16 87-103 14-29 (62)
20 1apy_A Aspartylglucosaminidase 30.0 35 0.0012 26.6 2.8 42 98-139 13-55 (162)
21 3v6i_B V-type ATP synthase, su 27.7 1.7E+02 0.0059 22.0 6.2 24 95-118 19-42 (105)
22 3k1r_B Usher syndrome type-1G 27.4 56 0.0019 21.7 3.2 23 85-108 40-62 (74)
23 1ic2_A Tropomyosin alpha chain 26.7 1.5E+02 0.005 19.9 6.3 8 94-101 4-11 (81)
24 1yxb_A PRA-PH, phosphoribosyl- 26.2 47 0.0016 24.2 2.8 25 89-113 28-54 (98)
25 2cly_B ATP synthase D chain, m 24.8 83 0.0028 24.1 4.1 40 98-137 86-125 (160)
26 1ykh_B RNA polymerase II holoe 23.1 1.4E+02 0.0049 22.0 5.0 30 95-124 98-127 (132)
27 2a8j_A Taspase 1, threonine as 21.8 53 0.0018 29.0 2.8 45 94-138 61-105 (420)
28 1yke_B RNA polymerase II holoe 21.6 1.5E+02 0.0052 22.5 5.0 31 94-124 97-127 (151)
29 1yc9_A VCEC, multidrug resista 20.5 3E+02 0.01 21.4 6.6 16 87-102 317-335 (442)
30 1yvw_A PRA-PH, phosphoribosyl- 20.2 66 0.0023 24.0 2.6 23 91-113 28-52 (115)
31 3u59_A Tropomyosin beta chain; 20.2 2.2E+02 0.0076 19.7 6.3 20 111-130 69-88 (101)
No 1
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=91.95 E-value=0.38 Score=36.07 Aligned_cols=39 Identities=26% Similarity=0.413 Sum_probs=29.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Q 030938 93 GLRRKLKQAEEEAVDIVREVE-KKIETVEERIEASEKEVET 132 (169)
Q Consensus 93 GIRKklkkAEEeA~EiVkE~E-~~veaae~g~e~Aekei~~ 132 (169)
||..= =+||.+|.+||.|+- ........+.++|++||+.
T Consensus 11 GIQqL-L~AEk~A~~iV~~ARk~k~~rLKqAK~EA~~EIe~ 50 (119)
T 4efa_G 11 GIATL-LQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEIDS 50 (119)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66554 589999999999977 4455566677788777764
No 2
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=91.74 E-value=0.22 Score=34.08 Aligned_cols=40 Identities=28% Similarity=0.419 Sum_probs=27.3
Q ss_pred CCCchhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 030938 88 DIPLFGLRRKLKQAEEEAVDIVREVEKKIE-TVEERIEASE 127 (169)
Q Consensus 88 dIpLFGIRKklkkAEEeA~EiVkE~E~~ve-aae~g~e~Ae 127 (169)
|.|--=+=+++|+||++|+++|.|++++.+ ..+.+.+.|+
T Consensus 11 ~~~~~EvL~eIKeAE~~A~~iVeeA~~ea~~ii~eAreeAk 51 (56)
T 2k6i_A 11 GVSVMEAIKEVKLAEEQAVKEIEEAKNRAEQIKAEAIEEAK 51 (56)
T ss_dssp CCCCTTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444557889999999999999885433 3444555554
No 3
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=75.83 E-value=6 Score=29.65 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030938 97 KLKQAEEEAVDIVREVEKKIET 118 (169)
Q Consensus 97 klkkAEEeA~EiVkE~E~~vea 118 (169)
-+.+|+++|.+|+.|++++++.
T Consensus 18 I~~eA~~~a~~I~~eA~~eA~~ 39 (187)
T 3v6i_A 18 LLQEAEAKAEAVKREAEEKAKA 39 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777777776654444
No 4
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1
Probab=68.45 E-value=16 Score=22.92 Aligned_cols=20 Identities=35% Similarity=0.521 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 030938 96 RKLKQAEEEAVDIVREVEKK 115 (169)
Q Consensus 96 KklkkAEEeA~EiVkE~E~~ 115 (169)
+.|+++..++.+|+.++.+.
T Consensus 2 ~~L~~Ar~ea~~Ii~~A~~~ 21 (61)
T 1l2p_A 2 DQLKKAKAEAQVIIEQANKR 21 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888886533
No 5
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=61.93 E-value=17 Score=28.21 Aligned_cols=20 Identities=35% Similarity=0.448 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030938 98 LKQAEEEAVDIVREVEKKIE 117 (169)
Q Consensus 98 lkkAEEeA~EiVkE~E~~ve 117 (169)
+.+|+|+|+||..+++.+.+
T Consensus 25 ~qEA~eKA~EI~~kAeeE~~ 44 (233)
T 4efa_E 25 RKEAEEKAKEIQLKADQEYE 44 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46788899999888765443
No 6
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=58.94 E-value=13 Score=23.90 Aligned_cols=21 Identities=33% Similarity=0.384 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 030938 97 KLKQAEEEAVDIVREVEKKIE 117 (169)
Q Consensus 97 klkkAEEeA~EiVkE~E~~ve 117 (169)
=+++|+++|.+|+.|++++.+
T Consensus 15 I~~eA~~eA~~Il~eA~~eA~ 35 (52)
T 2kk7_A 15 ILDDAKAEANKIISEAEAEKA 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346677888888888875543
No 7
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=53.74 E-value=35 Score=21.80 Aligned_cols=18 Identities=22% Similarity=0.473 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 030938 98 LKQAEEEAVDIVREVEKK 115 (169)
Q Consensus 98 lkkAEEeA~EiVkE~E~~ 115 (169)
+.+|+++|.+|+.|+++.
T Consensus 27 l~eA~~eA~~Ii~eA~~~ 44 (52)
T 2kk7_A 27 ISEAEAEKAKILEKAKEE 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555554443
No 8
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=50.02 E-value=36 Score=25.33 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030938 99 KQAEEEAVDIVREVEKKIET 118 (169)
Q Consensus 99 kkAEEeA~EiVkE~E~~vea 118 (169)
++|+++|.+|..|++++.+.
T Consensus 9 ~eA~~~a~~I~~eA~~~a~~ 28 (187)
T 3v6i_A 9 QEVEAEIQALLQEAEAKAEA 28 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45677777777776644433
No 9
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=47.34 E-value=35 Score=30.53 Aligned_cols=61 Identities=16% Similarity=0.265 Sum_probs=38.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhhhcccchhhhhhhhhhhHHHHHH
Q 030938 94 LRRKLKQAEEEAVDIVREVEKKIETVEERIEASEK--------EVETTAGFGGLAQAGAVAGAELVGLLV 155 (169)
Q Consensus 94 IRKklkkAEEeA~EiVkE~E~~veaae~g~e~Aek--------ei~~~~~~gglvQAGaVAGAEv~GVLV 155 (169)
|.++|++-++++.+.=+++|+.++.|+=++++|++ .|.+.-+++.+- ++|.-=.|.|-+|.
T Consensus 33 ~~~~l~~~~~~i~~~k~~~e~dLa~A~PaL~~A~~AL~~L~k~di~Elks~~~PP-~~V~~vmeaV~iLl 101 (536)
T 3err_A 33 VDEQLHKQQEVIADKQMSVKEDLDKVEPAVIEAQNAVKSIKKQHLVEVRSMANPP-AAVKLALESIALLL 101 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHTCSSCC-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCCc-HHHHHHHHHHHHHh
Confidence 34466666677777777788888888888887776 555666665442 33333344444443
No 10
>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1
Probab=46.64 E-value=27 Score=21.50 Aligned_cols=25 Identities=24% Similarity=0.608 Sum_probs=19.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Q 030938 93 GLRRKLKQAEEEAVDIVREVEKKIE 117 (169)
Q Consensus 93 GIRKklkkAEEeA~EiVkE~E~~ve 117 (169)
|+||.|.+-..+.+|-+|...+++.
T Consensus 1 glrkrlrkfrnkikeklkkigqkiq 25 (32)
T 1lyp_A 1 GLRKRLRKFRNKIKEKLKKIGQKIQ 25 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999998888888877665543
No 11
>4gdv_A L-asparaginase; NTN enzyme, homodimer, hydrolase, L-asparagine; 1.75A {Homo sapiens} PDB: 4gdu_A 4gdt_A 4gdw_A
Probab=45.30 E-value=11 Score=31.99 Aligned_cols=45 Identities=27% Similarity=0.376 Sum_probs=34.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 030938 94 LRRKLKQAEEEAVDIVREVEKKIETVEERIEASEKEVETTAGFGG 138 (169)
Q Consensus 94 IRKklkkAEEeA~EiVkE~E~~veaae~g~e~Aekei~~~~~~gg 138 (169)
.|+.|++|-+.+-+++++....+++++.++..-|..=..-+|+|+
T Consensus 25 ~~~~l~~a~~~g~~~L~~ggsalDAV~~av~~lEd~p~fNaG~Gs 69 (310)
T 4gdv_A 25 VHQGMVRAATVGYGILREGGSAVDAVEGAVVALEDDPEFNAGCGS 69 (310)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHSTTSSSSTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCCccCc
Confidence 356677888888889998888999999888877765445566654
No 12
>2gez_A L-asparaginase alpha subunit; isoaspartyl aminopeptidase, NTN-hydrolase, autoproteolysis, taspase, sodium binding, hydrolase; 2.60A {Lupinus luteus}
Probab=44.88 E-value=14 Score=29.63 Aligned_cols=46 Identities=17% Similarity=0.272 Sum_probs=34.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccch
Q 030938 94 LRRKLKQAEEEAVDIVREVEKKIETVEERIEASEKEVETTAGFGGL 139 (169)
Q Consensus 94 IRKklkkAEEeA~EiVkE~E~~veaae~g~e~Aekei~~~~~~ggl 139 (169)
.|+.|+++-+++.++++.....+++++.++..-|..--.-+|+|+.
T Consensus 30 ~~~~l~~a~~~g~~~L~~G~sAlDAV~~av~~lEd~p~fNaG~Gs~ 75 (195)
T 2gez_A 30 REEGLRHCLQIGVEALKAQKPPLDVVELVVRELENIEHFNAGIGSV 75 (195)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSSSSTTCC
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCcCCcC
Confidence 3567888888888899888888899988888777654556666543
No 13
>1k2x_A Putative L-asparaginase; NTN hydrolase, asparginase, autoproteolysis, hydrolase; HET: CME; 1.65A {Escherichia coli} SCOP: d.153.1.5 PDB: 1jn9_A* 1t3m_A 2zal_A
Probab=43.25 E-value=15 Score=28.83 Aligned_cols=45 Identities=20% Similarity=0.245 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccch
Q 030938 95 RRKLKQAEEEAVDIVREVEKKIETVEERIEASEKEVETTAGFGGL 139 (169)
Q Consensus 95 RKklkkAEEeA~EiVkE~E~~veaae~g~e~Aekei~~~~~~ggl 139 (169)
|+.|+++-+++.++++.....+++++.++..-|..--.-+|+|+.
T Consensus 28 ~~~l~~a~~~~~~~L~~g~saldAV~~av~~lEd~p~fNaG~Gs~ 72 (177)
T 1k2x_A 28 IEALSAIVETGQKMLEAGESALDVVTEAVRLLEECPLFNAGIGAV 72 (177)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSSSSTTCC
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCcCCcC
Confidence 567888888888899888888999998888777755556776553
No 14
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A
Probab=40.36 E-value=5.9 Score=28.53 Aligned_cols=15 Identities=27% Similarity=0.368 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH
Q 030938 99 KQAEEEAVDIVREVE 113 (169)
Q Consensus 99 kkAEEeA~EiVkE~E 113 (169)
++|+++|++|+.+++
T Consensus 24 ~eA~~~a~~i~~~a~ 38 (198)
T 2dm9_A 24 NEARQQAEKIKEEAR 38 (198)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444444
No 15
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=35.96 E-value=39 Score=25.53 Aligned_cols=18 Identities=39% Similarity=0.591 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 030938 96 RKLKQAEEEAVDIVREVE 113 (169)
Q Consensus 96 KklkkAEEeA~EiVkE~E 113 (169)
+++++||-||+-|+.|+|
T Consensus 31 ~~v~~AEAeA~ril~eAe 48 (105)
T 3v6i_B 31 ERVKRAEAEAKALLEEAE 48 (105)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555665555
No 16
>3c17_A L-asparaginase precursor; isoaspartyl peptidase, NTN-hydrolase, autoprot precursor, hydrolase; 1.95A {Escherichia coli} PDB: 2zak_A
Probab=35.23 E-value=23 Score=30.06 Aligned_cols=46 Identities=20% Similarity=0.240 Sum_probs=35.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccch
Q 030938 94 LRRKLKQAEEEAVDIVREVEKKIETVEERIEASEKEVETTAGFGGL 139 (169)
Q Consensus 94 IRKklkkAEEeA~EiVkE~E~~veaae~g~e~Aekei~~~~~~ggl 139 (169)
.|+.|+++-+++.+++++....+++++.++..-|..=-.-+|+|+.
T Consensus 27 ~~~~l~~a~~~~~~~L~~ggsalDAV~~av~~lEd~p~fNaG~Gs~ 72 (320)
T 3c17_A 27 YIEALSAIVETGQKMLEAGESALDVVTEAVRLLEECPLFNAGIGAV 72 (320)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHSTTSSSSTTCC
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhhhcCCCCCCccCCC
Confidence 3667888888889999888888999998888777654556776553
No 17
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=33.55 E-value=49 Score=22.38 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 030938 97 KLKQAEEEAVDIVREVE 113 (169)
Q Consensus 97 klkkAEEeA~EiVkE~E 113 (169)
.+++|++++++|+.++-
T Consensus 31 iVeeA~~ea~~ii~eAr 47 (56)
T 2k6i_A 31 EIEEAKNRAEQIKAEAI 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555555543
No 18
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=30.93 E-value=26 Score=24.02 Aligned_cols=16 Identities=25% Similarity=0.835 Sum_probs=12.1
Q ss_pred CCCCchhhhhHHHHHHH
Q 030938 87 EDIPLFGLRRKLKQAEE 103 (169)
Q Consensus 87 ~dIpLFGIRKklkkAEE 103 (169)
..||.| +|.|.++..|
T Consensus 15 kkIP~F-VR~kvrr~tE 30 (63)
T 2kru_A 15 GKVPFF-VRKKVRKNTD 30 (63)
T ss_dssp TTSCHH-HHHHHHHHHH
T ss_pred HhCCHH-HHHHHHHHHH
Confidence 469999 8888777644
No 19
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=30.04 E-value=29 Score=23.67 Aligned_cols=16 Identities=38% Similarity=0.644 Sum_probs=12.0
Q ss_pred CCCCchhhhhHHHHHHH
Q 030938 87 EDIPLFGLRRKLKQAEE 103 (169)
Q Consensus 87 ~dIpLFGIRKklkkAEE 103 (169)
..||.| +|.|.++..|
T Consensus 14 kkIP~F-VR~kvrr~tE 29 (62)
T 2l09_A 14 KNIPFF-ARSQAKARIE 29 (62)
T ss_dssp HTSCGG-GHHHHHHHHH
T ss_pred HhCCHH-HHHHHHHHHH
Confidence 359999 8888777644
No 20
>1apy_A Aspartylglucosaminidase; glycosylasparaginase, hydrolase; HET: NAG BMA; 2.00A {Homo sapiens} SCOP: d.153.1.5 PDB: 1apz_A*
Probab=29.99 E-value=35 Score=26.60 Aligned_cols=42 Identities=29% Similarity=0.433 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhhcccch
Q 030938 98 LKQAEEEAVDIVREVEKKIETVEERIEASEKEV-ETTAGFGGL 139 (169)
Q Consensus 98 lkkAEEeA~EiVkE~E~~veaae~g~e~Aekei-~~~~~~ggl 139 (169)
+++|-+++.++++.+...+++++.++..-|..- ..-+|+|+.
T Consensus 13 ~~~a~~~g~~~L~~G~sAlDAV~~av~~lEd~p~~fNAG~Gs~ 55 (162)
T 1apy_A 13 FKNATEAAWRALASGGSALDAVESGCAMCEREQCDGSVGFGGS 55 (162)
T ss_dssp CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTGGGSSSSSSC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCcCcCCCCC
Confidence 356778888999998888999999998888754 466777554
No 21
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=27.68 E-value=1.7e+02 Score=21.99 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 030938 95 RRKLKQAEEEAVDIVREVEKKIET 118 (169)
Q Consensus 95 RKklkkAEEeA~EiVkE~E~~vea 118 (169)
=.+|+.|.++|...|+++|++...
T Consensus 19 ~~~lE~Ar~eA~~~v~~AEAeA~r 42 (105)
T 3v6i_B 19 LERLEAAKKEAEERVKRAEAEAKA 42 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888889999999998865543
No 22
>3k1r_B Usher syndrome type-1G protein; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens}
Probab=27.36 E-value=56 Score=21.73 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=17.0
Q ss_pred ccCCCCchhhhhHHHHHHHHHHHH
Q 030938 85 SAEDIPLFGLRRKLKQAEEEAVDI 108 (169)
Q Consensus 85 ~A~dIpLFGIRKklkkAEEeA~Ei 108 (169)
..-||| +|-|||+-++-.+-+..
T Consensus 40 ~~lGI~-~G~RkkIl~ai~~~~~~ 62 (74)
T 3k1r_B 40 RSISVP-LGPREKILGAVRRRRQA 62 (74)
T ss_dssp HHTTCC-HHHHHHHHHHHHHHHHH
T ss_pred HHcCCC-cchHHHHHHHHHHHHHH
Confidence 367899 99999988776554443
No 23
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=26.71 E-value=1.5e+02 Score=19.89 Aligned_cols=8 Identities=13% Similarity=0.563 Sum_probs=4.0
Q ss_pred hhhHHHHH
Q 030938 94 LRRKLKQA 101 (169)
Q Consensus 94 IRKklkkA 101 (169)
|+||+...
T Consensus 4 ikkKm~~l 11 (81)
T 1ic2_A 4 IKKKMQML 11 (81)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554444
No 24
>1yxb_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; structural genomics, PSI, protein structure initiative; 2.60A {Streptomyces coelicolor} SCOP: a.204.1.4
Probab=26.15 E-value=47 Score=24.19 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=20.4
Q ss_pred CCch--hhhhHHHHHHHHHHHHHHHHH
Q 030938 89 IPLF--GLRRKLKQAEEEAVDIVREVE 113 (169)
Q Consensus 89 IpLF--GIRKklkkAEEeA~EiVkE~E 113 (169)
--|| |+.|=+||.-|||.|.+-.+.
T Consensus 28 ~~L~~kG~~kI~kKvgEEA~E~iiAak 54 (98)
T 1yxb_A 28 AELVDKGVHAIGKKVVEEAAEVWMAAE 54 (98)
T ss_dssp CCHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCcHHHHHHHHHHHHHHHHHHHH
Confidence 4466 899999999999999887754
No 25
>2cly_B ATP synthase D chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.53.1.1 PDB: 2wss_U*
Probab=24.77 E-value=83 Score=24.11 Aligned_cols=40 Identities=23% Similarity=0.266 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 030938 98 LKQAEEEAVDIVREVEKKIETVEERIEASEKEVETTAGFG 137 (169)
Q Consensus 98 lkkAEEeA~EiVkE~E~~veaae~g~e~Aekei~~~~~~g 137 (169)
++..+.+-+++++++++-+......|+..+++++..-+.-
T Consensus 86 ~~~i~a~e~~~~~~a~~~~~~s~~ri~~lekeL~~i~~~~ 125 (160)
T 2cly_B 86 TAQVDAEEKEDVKSCAEFLTQSKTRIQEYEKELEKMRNII 125 (160)
T ss_dssp TTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3455666678888888888888888888888887765543
No 26
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=23.12 E-value=1.4e+02 Score=21.98 Aligned_cols=30 Identities=30% Similarity=0.565 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030938 95 RRKLKQAEEEAVDIVREVEKKIETVEERIE 124 (169)
Q Consensus 95 RKklkkAEEeA~EiVkE~E~~veaae~g~e 124 (169)
-+.+++++++=++.|+|+|+-++.+...+.
T Consensus 98 ~~E~~~~~~el~~~v~e~e~ll~~v~~~l~ 127 (132)
T 1ykh_B 98 QKKLVEVEDEKIEAIKKKEKLMRHVDSMIE 127 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666666666655555443
No 27
>2a8j_A Taspase 1, threonine aspartase 1; MLL, glycosylspraginase, asparaginase, hydrolase; 1.90A {Homo sapiens} PDB: 2a8i_A 2a8m_A 2a8l_A
Probab=21.75 E-value=53 Score=29.00 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=33.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 030938 94 LRRKLKQAEEEAVDIVREVEKKIETVEERIEASEKEVETTAGFGG 138 (169)
Q Consensus 94 IRKklkkAEEeA~EiVkE~E~~veaae~g~e~Aekei~~~~~~gg 138 (169)
.|+.|++|-+++.++++.....+++++.++..-|..=-.-+|+|+
T Consensus 61 ~~~~l~~A~~~a~~~L~~GgsAlDAV~~av~~lEd~p~fNaG~Gs 105 (420)
T 2a8j_A 61 YKHVCKRACQKAIEKLQAGALATDAVTAALVELEDSPFTNAGMGS 105 (420)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHSTTSSSSTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCccCCc
Confidence 466788888888888988888889988888877764334566654
No 28
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=21.59 E-value=1.5e+02 Score=22.52 Aligned_cols=31 Identities=32% Similarity=0.588 Sum_probs=18.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030938 94 LRRKLKQAEEEAVDIVREVEKKIETVEERIE 124 (169)
Q Consensus 94 IRKklkkAEEeA~EiVkE~E~~veaae~g~e 124 (169)
+-+.+++++++=++.|+|+|+-++.+...+.
T Consensus 97 Le~E~~~~~~el~~~v~eae~ll~~v~~~l~ 127 (151)
T 1yke_B 97 LQKKLVEVEDEKIEAIKKKEKLLRHVDSLIE 127 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555556666666666666666655554
No 29
>1yc9_A VCEC, multidrug resistance protein; outer membrane protein, multidrug resistanc membrane protein; HET: BOG; 1.80A {Vibrio cholerae}
Probab=20.45 E-value=3e+02 Score=21.41 Aligned_cols=16 Identities=44% Similarity=0.632 Sum_probs=9.9
Q ss_pred CCCCch--hhhh-HHHHHH
Q 030938 87 EDIPLF--GLRR-KLKQAE 102 (169)
Q Consensus 87 ~dIpLF--GIRK-klkkAE 102 (169)
-.+||| |-++ +++.++
T Consensus 317 ~~~plf~gg~~~~~~~~a~ 335 (442)
T 1yc9_A 317 IYLPLFTGGRLEGQLTSAE 335 (442)
T ss_dssp EECCCCCTTHHHHHHHHHH
T ss_pred eeeecccchHHHHHHHHHH
Confidence 458999 6444 555553
No 30
>1yvw_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; helix bundle, histidine biosynthesis, structural genomics, PSI, protein structure initiative; 2.60A {Bacillus cereus} SCOP: a.204.1.4
Probab=20.24 E-value=66 Score=24.01 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=19.0
Q ss_pred ch--hhhhHHHHHHHHHHHHHHHHH
Q 030938 91 LF--GLRRKLKQAEEEAVDIVREVE 113 (169)
Q Consensus 91 LF--GIRKklkkAEEeA~EiVkE~E 113 (169)
|| |+-|=+||.-|||.|.+-.+.
T Consensus 28 L~~kG~~kI~kKvgEEA~E~iiAak 52 (115)
T 1yvw_A 28 LFSKGEDKILKKIGEECAEVIIACK 52 (115)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCcHHHHHHHHHHHHHHHHHHHh
Confidence 55 889999999999999887643
No 31
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=20.18 E-value=2.2e+02 Score=19.66 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030938 111 EVEKKIETVEERIEASEKEV 130 (169)
Q Consensus 111 E~E~~veaae~g~e~Aekei 130 (169)
++...++..+.....||.++
T Consensus 69 ~a~~kLe~~ek~~~~AE~ev 88 (101)
T 3u59_A 69 EAQEKLEQAEKKATDAEAEV 88 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443
Done!