Query 030938
Match_columns 169
No_of_seqs 14 out of 16
Neff 2.1
Searched_HMMs 13730
Date Mon Mar 25 10:33:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030938.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030938hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1l2pa_ f.23.21.1 (A:) F1F0 AT 52.5 21 0.0015 22.4 5.9 28 97-124 3-31 (61)
2 g1k2x.1 d.153.1.5 (A:,B:) Glyc 42.0 7.6 0.00055 30.6 2.9 45 94-138 27-71 (291)
3 d1l2pa_ f.23.21.1 (A:) F1F0 AT 40.6 37 0.0027 21.2 5.6 35 98-132 15-50 (61)
4 d2ce7a1 a.269.1.1 (A:411-603) 29.1 36 0.0026 23.3 4.5 31 94-124 147-177 (193)
5 d1ykhb1 a.252.1.1 (B:2-130) RN 24.8 56 0.0041 22.5 4.9 30 95-124 97-126 (129)
6 d2di4a1 a.269.1.1 (A:406-607) 23.7 60 0.0043 22.2 4.9 31 94-124 146-176 (202)
7 d1ek9a_ f.5.1.1 (A:) Integral 19.6 1E+02 0.0075 21.6 5.5 7 87-93 288-294 (428)
8 g1apy.1 d.153.1.5 (A:,B:) Glyc 19.3 39 0.0028 26.5 3.4 41 98-138 12-53 (302)
9 d1wp1a_ f.5.1.1 (A:) Outer mem 16.8 1.2E+02 0.009 22.0 5.6 15 87-101 330-347 (456)
10 d1vcsa1 a.47.2.1 (A:8-96) Vesi 15.2 85 0.0062 20.2 3.8 21 107-127 31-51 (89)
No 1
>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain {Escherichia coli [TaxId: 562]}
Probab=52.48 E-value=21 Score=22.39 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 030938 97 KLKQAEEEAVDIVREVE-KKIETVEERIE 124 (169)
Q Consensus 97 klkkAEEeA~EiVkE~E-~~veaae~g~e 124 (169)
.|++|..+|.+|+.++. .+-..++.+.+
T Consensus 3 ~L~eAK~eAa~Ii~qA~~ra~qIveeak~ 31 (61)
T d1l2pa_ 3 QLKKAKAEAQVIIEQANKRRSQILDEAKA 31 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777755 33333444333
No 2
>g1k2x.1 d.153.1.5 (A:,B:) Glycosylasparaginase (aspartylglucosaminidase, AGA) {Escherichia coli [TaxId: 562]}
Probab=41.96 E-value=7.6 Score=30.57 Aligned_cols=45 Identities=20% Similarity=0.232 Sum_probs=35.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 030938 94 LRRKLKQAEEEAVDIVREVEKKIETVEERIEASEKEVETTAGFGG 138 (169)
Q Consensus 94 IRKklkkAEEeA~EiVkE~E~~veaae~g~e~Aekei~~~~~~gg 138 (169)
.|+.|++|-+.+.+.+++....+++++.++..-|..--.-+|+|+
T Consensus 27 ~~~~l~~a~~~~~~~L~~G~saldAV~~av~~lEd~p~fNaG~Gs 71 (291)
T g1k2x.1 27 YIEALSAIVETGQKMLEAGESALDVVTEAVRLLEECPLFNAGIGA 71 (291)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSSSSTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCcCCCcCC
Confidence 456688888899999999888999999988877765445566655
No 3
>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain {Escherichia coli [TaxId: 562]}
Probab=40.60 E-value=37 Score=21.18 Aligned_cols=35 Identities=17% Similarity=0.324 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Q 030938 98 LKQAEEEAVDIVREVE-KKIETVEERIEASEKEVET 132 (169)
Q Consensus 98 lkkAEEeA~EiVkE~E-~~veaae~g~e~Aekei~~ 132 (169)
++.|...+.+||.|+. ++-+-+++-++.|..+|+.
T Consensus 15 i~qA~~ra~qIveeak~~A~~Ea~rI~~~A~~eIe~ 50 (61)
T d1l2pa_ 15 IEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEA 50 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888999999965 4444456677777777764
No 4
>d2ce7a1 a.269.1.1 (A:411-603) Cell division protein FtsH, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=29.12 E-value=36 Score=23.32 Aligned_cols=31 Identities=19% Similarity=0.413 Sum_probs=22.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030938 94 LRRKLKQAEEEAVDIVREVEKKIETVEERIE 124 (169)
Q Consensus 94 IRKklkkAEEeA~EiVkE~E~~veaae~g~e 124 (169)
+++-|++++++|++|+++....++.....+-
T Consensus 147 v~~ll~~a~~~a~~iL~~~~~~l~~la~~Ll 177 (193)
T d2ce7a1 147 VKKIVTNCYERAKEIIRKYRKQLDNIVEILL 177 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4556677788888888887777777655443
No 5
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.79 E-value=56 Score=22.52 Aligned_cols=30 Identities=30% Similarity=0.565 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030938 95 RRKLKQAEEEAVDIVREVEKKIETVEERIE 124 (169)
Q Consensus 95 RKklkkAEEeA~EiVkE~E~~veaae~g~e 124 (169)
-++++.++++=++.|||+|+-++..+..+.
T Consensus 97 e~E~~~~~~el~~~v~e~e~ll~~i~~~i~ 126 (129)
T d1ykhb1 97 QKKLVEVEDEKIEAIKKKEKLMRHVDSMIE 126 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555556666667776666665555543
No 6
>d2di4a1 a.269.1.1 (A:406-607) Cell division protein FtsH, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=23.70 E-value=60 Score=22.23 Aligned_cols=31 Identities=23% Similarity=0.389 Sum_probs=20.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030938 94 LRRKLKQAEEEAVDIVREVEKKIETVEERIE 124 (169)
Q Consensus 94 IRKklkkAEEeA~EiVkE~E~~veaae~g~e 124 (169)
+++-|+++.++|++|+++....++.....+-
T Consensus 146 v~~ll~~a~~~a~~iL~~~~~~l~~la~~Ll 176 (202)
T d2di4a1 146 VKRIITEQYEKAKAIVEEYKEPLKAVVKKLL 176 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4555666777888888887777776555444
No 7
>d1ek9a_ f.5.1.1 (A:) Integral outer membrane protein TolC, efflux pump component {Escherichia coli [TaxId: 562]}
Probab=19.63 E-value=1e+02 Score=21.61 Aligned_cols=7 Identities=14% Similarity=0.662 Sum_probs=4.8
Q ss_pred CCCCchh
Q 030938 87 EDIPLFG 93 (169)
Q Consensus 87 ~dIpLFG 93 (169)
-.+|||+
T Consensus 288 ~~~plf~ 294 (428)
T d1ek9a_ 288 FSLPIYQ 294 (428)
T ss_dssp EEEEEEE
T ss_pred EEEehhH
Confidence 4578885
No 8
>g1apy.1 d.153.1.5 (A:,B:) Glycosylasparaginase (aspartylglucosaminidase, AGA) {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.35 E-value=39 Score=26.49 Aligned_cols=41 Identities=29% Similarity=0.473 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhcccc
Q 030938 98 LKQAEEEAVDIVREVEKKIETVEERIEASEKE-VETTAGFGG 138 (169)
Q Consensus 98 lkkAEEeA~EiVkE~E~~veaae~g~e~Aeke-i~~~~~~gg 138 (169)
.++|-+++-++++++...+++++.++..-|.+ ...-+|+|+
T Consensus 12 ~~~A~~~a~~~L~~G~saldAV~~av~~lEddp~~~NaG~Gs 53 (302)
T g1apy.1 12 FKNATEAAWRALASGGSALDAVESGCAMCEREQCDGSVGFGG 53 (302)
T ss_dssp CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTGGGSSSSSS
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCcCCCcccc
Confidence 36788888999999999999999999888864 345667644
No 9
>d1wp1a_ f.5.1.1 (A:) Outer membrane protein OprM {Pseudomonas aeruginosa [TaxId: 287]}
Probab=16.80 E-value=1.2e+02 Score=22.00 Aligned_cols=15 Identities=40% Similarity=0.711 Sum_probs=7.8
Q ss_pred CCCCch--hhhh-HHHHH
Q 030938 87 EDIPLF--GLRR-KLKQA 101 (169)
Q Consensus 87 ~dIpLF--GIRK-klkkA 101 (169)
-++||| |-++ +++++
T Consensus 330 ~~~pl~~g~~~~~~~~~a 347 (456)
T d1wp1a_ 330 INLPIFTAGSLRASLDYA 347 (456)
T ss_dssp CCCCCCCSSHHHHHHHHH
T ss_pred ccccchhccchhhhhhHH
Confidence 347888 4333 44444
No 10
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.24 E-value=85 Score=20.16 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 030938 107 DIVREVEKKIETVEERIEASE 127 (169)
Q Consensus 107 EiVkE~E~~veaae~g~e~Ae 127 (169)
..|+++|.+++-|.+-|+.-+
T Consensus 31 ~~l~~ie~~leEA~ell~qMe 51 (89)
T d1vcsa1 31 QMVANVEKQLEEARELLEQMD 51 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 444444444444444444333
Done!