BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>030939
MLRGAKVGVSMEAIHVHCHRYCFLRKILSTCNHSKAFNKQTTHCRQKKLSRRKPILLSTS
IDRGYLTRTAAGGVPPPPLDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPF
VKIRLRGRFWHKRSTVIARLANYLKQRIPEILEVDIEDEKQLDDSPENF

High Scoring Gene Products

Symbol, full name Information P value
AT2G33180 protein from Arabidopsis thaliana 3.5e-36
ssl2667
NifU protein 		protein from Synechocystis sp. PCC 6803 substr. Kazusa 0.00023

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030939
        (169 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2046510 - symbol:AT2G33180 "AT2G33180" species...   390  3.5e-36   1
UNIPROTKB|P74558 - symbol:ssl2667 "NifU protein" species:...    91  0.00023   1


>TAIR|locus:2046510 [details] [associations]
            symbol:AT2G33180 "AT2G33180" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0009570 "chloroplast stroma" evidence=IDA]
            [GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009073
            "aromatic amino acid family biosynthetic process" evidence=RCA]
            [GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=RCA] GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
            EMBL:AC002334 EMBL:AY063835 EMBL:AY117211 IPI:IPI00540031
            PIR:C84742 RefSeq:NP_180876.1 UniGene:At.27183
            ProteinModelPortal:O49317 SMR:O49317 PaxDb:O49317 PRIDE:O49317
            EnsemblPlants:AT2G33180.1 GeneID:817879 KEGG:ath:AT2G33180
            TAIR:At2g33180 eggNOG:NOG325374 HOGENOM:HOG000114716
            InParanoid:O49317 OMA:DDSPANF PhylomeDB:O49317
            ProtClustDB:CLSN2913072 ArrayExpress:O49317 Genevestigator:O49317
            Uniprot:O49317
        Length = 166

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 82/132 (62%), Positives = 94/132 (71%)

Query:    45 RQKKLSRRKPILLSTSIDRGYLTRT-------AAGGVPPPPLDLTEDNVRQVIADARGEL 97
             R   +  RKP  L T +      RT       +  GV  PPLDLTEDN+  V+++AR EL
Sbjct:    35 RFSNVRMRKPAYLGTILSEKSRARTLTTAEAVSGSGVSLPPLDLTEDNIHLVLSEARIEL 94

Query:    98 AQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIPEILEVDIE 157
             AQLFD+SVGITG  EL ELDGPFV I LRG+FWH R+ V+ARL NYLKQRIPEILEV+IE
Sbjct:    95 AQLFDSSVGITGQVELVELDGPFVTISLRGKFWHTRAMVLARLGNYLKQRIPEILEVNIE 154

Query:   158 DEKQLDDSPENF 169
             DEKQLDDSP NF
Sbjct:   155 DEKQLDDSPANF 166


>UNIPROTKB|P74558 [details] [associations]
            symbol:ssl2667 "NifU protein" species:1111708
            "Synechocystis sp. PCC 6803 substr. Kazusa" [GO:0016226
            "iron-sulfur cluster assembly" evidence=IDA] [GO:0051537 "2 iron, 2
            sulfur cluster binding" evidence=IDA] InterPro:IPR001075
            Pfam:PF01106 ProDom:PD002830 GO:GO:0005506 GO:GO:0016226
            GO:GO:0051537 EMBL:BA000022 GenomeReviews:BA000022_GR
            eggNOG:COG0694 HOGENOM:HOG000067770 PIR:S76753 RefSeq:NP_442853.1
            RefSeq:YP_005652914.1 ProteinModelPortal:P74558 SMR:P74558
            IntAct:P74558 STRING:P74558 GeneID:12255274 GeneID:952429
            KEGG:syn:ssl2667 KEGG:syy:SYNGTS_2961 PATRIC:23843488 OMA:RPYLQVD
            ProtClustDB:CLSK893749 Uniprot:P74558
        Length = 76

 Score = 91 (37.1 bits), Expect = 0.00023, P = 0.00023
 Identities = 30/80 (37%), Positives = 45/80 (56%)

Query:    79 LDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWH-KRSTVI 137
             ++LT +NV  V+ + R  L  + D   G  G  E+ ELDGP VK+RL+G       ST+ 
Sbjct:     1 MELTLNNVETVLDELRPYL--MAD---G--GNVEVVELDGPIVKVRLQGACGSCPSSTMT 53

Query:   138 ARLA--NYLKQRIPEILEVD 155
              ++     L++ IPEI EV+
Sbjct:    54 LKMGIERKLREMIPEIAEVE 73


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.137   0.409    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      169       169   0.00082  108 3  11 22  0.36    32
                                                     31  0.47    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  577 (61 KB)
  Total size of DFA:  141 KB (2087 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.23u 0.09s 16.32t   Elapsed:  00:00:00
  Total cpu time:  16.23u 0.09s 16.32t   Elapsed:  00:00:00
  Start:  Fri May 10 04:52:50 2013   End:  Fri May 10 04:52:50 2013

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