BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030939
(169 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Z51|A Chain A, Crystal Structure Of Arabidopsis Cnfu Involved In Iron-
Sulfur Cluster Biosynthesis
Length = 154
Score = 34.3 bits (77), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 79 LDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIA 138
L+L E+N+ +V+ + R L D S+ +L E++ P VKIR+ G + +A
Sbjct: 83 LELNEENIEKVLEEIRPYLIGTADGSL------DLVEIEDPIVKIRITGPAAGVMTVRVA 136
Query: 139 RLANYLKQRIPEILEVDI 156
+ L+++IP I V +
Sbjct: 137 -VTQKLREKIPSIAAVQL 153
Score = 30.4 bits (67), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 12/94 (12%)
Query: 81 LTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIAR- 139
LTE+NV V+ + R L S G G L E+DG V+++L+G S+ +
Sbjct: 4 LTEENVESVLDEIRPYL-----MSDG--GNVALHEIDGNVVRVKLQGACGSCPSSTMTMK 56
Query: 140 --LANYLKQRIPEILEVDI--EDEKQLDDSPENF 169
+ L ++IPEI+ V+ ++E L+ + EN
Sbjct: 57 MGIERRLMEKIPEIVAVEALPDEETGLELNEENI 90
>pdb|1TH5|A Chain A, Solution Structure Of C-Terminal Domain Of Nifu-Like
Protein From Oryza Sativa
Length = 74
Score = 33.1 bits (74), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 79 LDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIA 138
L+L E+NV +V+ + R LA G G+ L + GP VK+RL G R+ IA
Sbjct: 2 LELNEENVEKVLNEIRPYLA-----GTGGGGLQFLM-IKGPIVKVRLTGPAAVVRTVRIA 55
Query: 139 RLANYLKQRIPEI 151
++ L+++IP I
Sbjct: 56 -VSKKLREKIPSI 67
>pdb|3VTH|A Chain A, Crystal Structure Of Full-Length Hypf In The Phosphate-
And Nucleotide-Bound Form
pdb|3VTH|B Chain B, Crystal Structure Of Full-Length Hypf In The Phosphate-
And Nucleotide-Bound Form
pdb|3VTI|A Chain A, Crystal Structure Of Hype-Hypf Complex
pdb|3VTI|B Chain B, Crystal Structure Of Hype-Hypf Complex
Length = 761
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 21 YCFLRKILSTCNHSKAFNKQTTHC-RQKKLSRRKPILLSTSIDRGYLTRTAAGGVPPPPL 79
Y F+ + ++ KAFN R KKL R P +++ + +GYL+ A + P +
Sbjct: 420 YAFISHHIGDLDNEKAFNYYIEQIERYKKLFRVDPEVVAHDMHKGYLSTQYAKSLDLPKI 479
Query: 80 DL 81
++
Sbjct: 480 EV 481
>pdb|3S6T|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 V327g Complexed With Pugnac
Length = 575
Score = 30.0 bits (66), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 68 RTAAGGVPPPPLDLTEDNVRQVIADARGELAQLFDTS----VGITGVAELAELDGPFVKI 123
++ G P L+ T+D + Q + D ++A++FDT+ +G V+E ++
Sbjct: 304 KSYCGEPPCGQLNPTKDELYQYLEDIYSDMAEVFDTTDIFHMGGDEVSEACWNSSDSIQN 363
Query: 124 RLRGRFWHKRSTVIARLANYLKQR 147
+ W +L NY +Q+
Sbjct: 364 FMMQNRWDLDKESFLKLWNYFQQK 387
>pdb|3VTR|A Chain A, Crystal Structure Of Insect Beta-n-acetyl-d-hexosaminidase
Ofhex1 E328a Complexed With Tmg-chitotriomycin
Length = 572
Score = 29.6 bits (65), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 74 VPPP--PLDLTEDNVRQVIADARGELAQLFDTS----VGITGVAELAELDGPFVKIRLRG 127
V PP L+ T+D + Q + D ++A++FDT+ +G V+E ++ +
Sbjct: 305 VAPPCGQLNPTKDELYQYLEDIYSDMAEVFDTTDIFHMGGDEVSEACWNSSDSIQNFMMQ 364
Query: 128 RFWHKRSTVIARLANYLKQR 147
W +L NY +Q+
Sbjct: 365 NRWDLDKESFLKLWNYFQQK 384
>pdb|3NSM|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 From Ostrinia Furnacalis
pdb|3NSN|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Tmg-Chitotriomycin
pdb|3OZP|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Pugnac
pdb|3OZO|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Ngt
Length = 572
Score = 29.6 bits (65), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 74 VPPP--PLDLTEDNVRQVIADARGELAQLFDTS----VGITGVAELAELDGPFVKIRLRG 127
V PP L+ T+D + Q + D ++A++FDT+ +G V+E ++ +
Sbjct: 305 VEPPCGQLNPTKDELYQYLEDIYSDMAEVFDTTDIFHMGGDEVSEACWNSSDSIQNFMMQ 364
Query: 128 RFWHKRSTVIARLANYLKQR 147
W +L NY +Q+
Sbjct: 365 NRWDLDKESFLKLWNYFQQK 384
>pdb|3DM9|B Chain B, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
Length = 328
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 88 QVIADARGE-LAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQ 146
++I +A E ++++ +TS I + E+ + + P+V I G ++T IA+LAN+LK
Sbjct: 97 KIIEEAVKEAVSEILETSRRIDLIEEIRKAEKPYV-IXFVGFNGSGKTTTIAKLANWLKN 155
>pdb|2JIS|A Chain A, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp.
pdb|2JIS|B Chain B, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp
Length = 515
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 44 CRQKKLSRRKPILLSTSIDRGYLTRTAAGGVPPPPLDLTEDNVRQVIADARGEL 97
C+Q+ L P+ L TS + Y + A L L D+VR V AD RG++
Sbjct: 193 CKQRGLRTLPPLALFTSKECHYSIQKGAAF-----LGLGTDSVRVVKADERGKM 241
>pdb|3DMD|B Chain B, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3DMD|A Chain A, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3DMD|C Chain C, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3E70|C Chain C, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
Length = 328
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 88 QVIADARGE-LAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQ 146
++I +A E ++++ +TS I + E+ + + P+V I G ++T IA+LAN+LK
Sbjct: 97 KIIEEAVKEAVSEILETSRRIDLIEEIRKAEKPYV-IMFVGFNGSGKTTTIAKLANWLKN 155
>pdb|3EGJ|A Chain A, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
Cholerae.
pdb|3EGJ|B Chain B, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
Cholerae.
pdb|3IV8|A Chain A, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
Cholerae Complexed With Fructose 6-Phosphate
pdb|3IV8|B Chain B, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
Cholerae Complexed With Fructose 6-Phosphate
pdb|3IV8|C Chain C, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
Cholerae Complexed With Fructose 6-Phosphate
pdb|3IV8|D Chain D, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
Cholerae Complexed With Fructose 6-Phosphate
Length = 381
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Query: 76 PPPLDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRG 127
P + +++N+RQ IA AR A+ + S+G+ L+GP++ + +G
Sbjct: 97 PTLITSSDENMRQAIAAAREYQAKYPNQSLGL-------HLEGPYLNVMKKG 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,729,856
Number of Sequences: 62578
Number of extensions: 167883
Number of successful extensions: 393
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 392
Number of HSP's gapped (non-prelim): 14
length of query: 169
length of database: 14,973,337
effective HSP length: 92
effective length of query: 77
effective length of database: 9,216,161
effective search space: 709644397
effective search space used: 709644397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)