BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030939
(169 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q03SU6|SYC_LACBA Cysteine--tRNA ligase OS=Lactobacillus brevis (strain ATCC 367 /
JCM 1170) GN=cysS PE=3 SV=1
Length = 470
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 22/134 (16%)
Query: 24 LRKILSTCNHSK--AFNKQTTHCRQKKLSRRKPILLSTSIDR-GYLTRTAAGGVPPPPLD 80
LR +ST + + + +Q ++ L R L T+ D GY + A G P
Sbjct: 294 LRFFMSTTQYRRPIQYTQQNLDTAERNLER-----LQTAYDNMGYRLKDAEAGNDPK--- 345
Query: 81 LTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARL 140
E RQ++AD + F+ GI V ELA L G + +R V A
Sbjct: 346 -VEQETRQIVADYIDAMDDDFNVQNGIAKVHELARL----------GNVYAERPVVFAGT 394
Query: 141 ANYLKQRIPEILEV 154
++++Q + ++L V
Sbjct: 395 LDFIRQTLSDLLSV 408
>sp|Q93W20|NIFU2_ARATH NifU-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=NIFU2
PE=1 SV=1
Length = 235
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 79 LDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIA 138
L+L E+N+ +V+ + R L D S+ +L E++ P VKIR+ G + +A
Sbjct: 164 LELNEENIEKVLEEIRPYLIGTADGSL------DLVEIEDPIVKIRITGPAAGVMTVRVA 217
Query: 139 RLANYLKQRIPEILEVDI 156
+ L+++IP I V +
Sbjct: 218 -VTQKLREKIPSIAAVQL 234
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 14/106 (13%)
Query: 71 AGGVPPPPLD--LTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGR 128
A P P L+ LTE+NV V+ + R L S G G L E+DG V+++L+G
Sbjct: 73 AVATPDPILEVPLTEENVESVLDEIRPYL-----MSDG--GNVALHEIDGNIVRVKLQGA 125
Query: 129 FWHKRSTVIAR---LANYLKQRIPEILEVDI--EDEKQLDDSPENF 169
S+ + + L ++IPEI+ V+ ++E L+ + EN
Sbjct: 126 CGSCPSSTMTMKMGIERRLMEKIPEIVAVEALPDEETGLELNEENI 171
>sp|P38484|INGR2_HUMAN Interferon gamma receptor 2 OS=Homo sapiens GN=IFNGR2 PE=1 SV=2
Length = 337
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 81 LTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRG--RFW-HKRSTVI 137
L+ + + +ADA EL Q+ SVG + + F+ ++ RG ++W H ++
Sbjct: 229 LSNISCYETMADASTELQQVILISVGTFSLLSVLAGACFFLVLKYRGLIKYWFHTPPSIP 288
Query: 138 ARLANYLKQRIPEILEVDIEDEKQLDD 164
++ YLK ILE +D DD
Sbjct: 289 LQIEEYLKDPTQPILEALDKDSSPKDD 315
>sp|Q84RQ7|NIFU3_ARATH NifU-like protein 3, chloroplastic OS=Arabidopsis thaliana GN=NIFU3
PE=2 SV=1
Length = 236
Score = 33.5 bits (75), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 79 LDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIA 138
L+L ++N+ +V+++ R L+ G G+ EL E+DG VK+RL G + +A
Sbjct: 164 LELNDENIEKVLSELRPYLS-----GTGGGGL-ELVEIDGYVVKVRLTGPAAGVMTVRVA 217
Query: 139 RLANYLKQRIPEILEVDI 156
L L++ IP I V +
Sbjct: 218 -LTQKLRETIPSIGAVQL 234
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 10/80 (12%)
Query: 79 LDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRS---T 135
+ LTE+NV +V+ + R L + G L E+DG V ++L+G S T
Sbjct: 82 MPLTEENVERVLDEVRPSL-------MADGGNVALHEIDGLVVVLKLQGACGSCPSSSMT 134
Query: 136 VIARLANYLKQRIPEILEVD 155
+ + + L+ +IPEI+ V+
Sbjct: 135 LKMGIESRLRDKIPEIMSVE 154
>sp|Q84LK7|NIFU1_ORYSJ NifU-like protein 1, chloroplastic OS=Oryza sativa subsp. japonica
GN=NIFU1 PE=1 SV=1
Length = 226
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 79 LDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIA 138
L+L E+NV +V+ + R LA G G+ + + GP VK+RL G R+ IA
Sbjct: 154 LELNEENVEKVLNEIRPYLA-----GTGGGGL-QFLMIKGPIVKVRLTGPAAVVRTVRIA 207
Query: 139 RLANYLKQRIPEI 151
++ L+++IP I
Sbjct: 208 -VSKKLREKIPSI 219
>sp|P56600|GAL10_CANMA Bifunctional protein GAL10 (Fragment) OS=Candida maltosa GN=GAL10
PE=3 SV=1
Length = 153
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 30/63 (47%)
Query: 106 GITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIPEILEVDIEDEKQLDDS 165
G G + EL +K+ + + +AR+ +KQ + ++VDI +EK+L+
Sbjct: 13 GYIGSHTVIELINHGIKVVIADNLSNSSYDAVARIEFIVKQHVSHFIKVDIRNEKELNQV 72
Query: 166 PEN 168
N
Sbjct: 73 FSN 75
>sp|B2HMK0|FAA32_MYCMM Long-chain-fatty-acid--AMP ligase FadD32 OS=Mycobacterium marinum
(strain ATCC BAA-535 / M) GN=fadD32 PE=3 SV=1
Length = 629
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 18/86 (20%)
Query: 80 DLTEDNVRQVIADARGELAQLFDTSVGITGVAELAEL----------DGPFVKIRLRGR- 128
+L + +V ADA +AQ+ S G GV E A + DG +I L G
Sbjct: 369 ELNKQRFVEVAADAPNAVAQV---SAGKVGVDEWAVIVDTETASELPDGQIGEIWLHGNN 425
Query: 129 ----FWHKRSTVIARLANYLKQRIPE 150
+W K N LK R+PE
Sbjct: 426 LGIGYWGKEEESAQTFRNILKSRVPE 451
>sp|B3EAS4|PURA_GEOLS Adenylosuccinate synthetase OS=Geobacter lovleyi (strain ATCC
BAA-1151 / DSM 17278 / SZ) GN=purA PE=3 SV=1
Length = 430
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 25/132 (18%)
Query: 60 SIDRGYLTRTAAGGVPPPPLDLTEDNVRQVIAD-----ARGELAQLFDTSV--------G 106
I + Y+TR +G P LD T + +RQV + R FD V G
Sbjct: 264 GISKAYVTRVGSGPFPTELLDETGEKLRQVGGEFGATTGRPRRCGWFDAMVIRYAVRING 323
Query: 107 ITGVAELAELD--GPF--VKIRLRGRF-WHKRSTVIARLANY-----LKQRIPEILEVDI 156
+TG+A L +LD F +K+ RF + T+ A+L + + + +P +VDI
Sbjct: 324 LTGIA-LTKLDVLSDFETIKVCTGYRFEGQELETLPAKLETFENCEPVYEELPG-WKVDI 381
Query: 157 EDEKQLDDSPEN 168
+ D PEN
Sbjct: 382 TGVRSYDQLPEN 393
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,559,154
Number of Sequences: 539616
Number of extensions: 2277605
Number of successful extensions: 6229
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 6225
Number of HSP's gapped (non-prelim): 14
length of query: 169
length of database: 191,569,459
effective HSP length: 109
effective length of query: 60
effective length of database: 132,751,315
effective search space: 7965078900
effective search space used: 7965078900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)