Query 030939
Match_columns 169
No_of_seqs 135 out of 459
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 10:35:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030939.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030939hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xhj_A Nitrogen fixation prote 99.9 1.1E-25 3.8E-30 165.0 9.5 73 81-160 7-82 (88)
2 1th5_A NIFU1; iron-sulfur clus 99.9 2.9E-26 9.9E-31 163.4 5.2 71 79-157 2-73 (74)
3 1veh_A NIFU-like protein hirip 99.9 5.2E-24 1.8E-28 157.1 8.1 73 79-158 11-87 (92)
4 2z51_A NIFU-like protein 2, ch 99.9 1.5E-23 5.3E-28 165.9 8.9 76 74-157 78-154 (154)
5 2z51_A NIFU-like protein 2, ch 99.9 2.6E-23 8.9E-28 164.6 9.5 73 79-158 2-77 (154)
6 3cq1_A Putative uncharacterize 98.4 5.1E-07 1.7E-11 65.1 5.8 72 81-157 6-80 (103)
7 1uwd_A Hypothetical protein TM 98.0 7.7E-06 2.6E-10 58.7 5.5 72 81-157 6-81 (103)
8 3lno_A Putative uncharacterize 97.6 3.7E-05 1.3E-09 56.0 3.6 74 80-157 7-84 (108)
9 3prb_A FKBP-type peptidyl-prol 75.0 4.6 0.00016 33.2 5.3 48 114-161 172-221 (231)
10 3fry_A Probable copper-exporti 71.4 6.8 0.00023 24.5 4.4 32 120-157 6-38 (73)
11 3hdu_A Putative thioesterase; 67.6 24 0.0008 25.8 7.3 47 77-132 3-53 (157)
12 3dxs_X Copper-transporting ATP 65.1 6.3 0.00021 24.3 3.2 32 120-156 3-35 (74)
13 1u14_A Hypothetical UPF0244 pr 61.3 6.2 0.00021 31.3 3.3 43 69-112 37-81 (172)
14 4a4j_A Pacszia, cation-transpo 61.0 9.6 0.00033 23.0 3.5 33 120-157 3-36 (69)
15 3ux2_A MIP18 family protein FA 60.0 6.9 0.00024 30.1 3.2 40 117-156 48-89 (130)
16 1urr_A CG18505 protein; acylph 59.9 17 0.00058 25.9 5.1 61 94-162 27-87 (102)
17 1xcr_A Hypothetical protein PT 59.8 5 0.00017 35.3 2.6 58 88-147 184-242 (316)
18 2zzt_A Putative uncharacterize 55.1 51 0.0017 23.0 7.6 61 89-156 11-80 (107)
19 1t82_A Hypothetical acetyltran 55.0 15 0.00051 27.1 4.3 42 78-128 10-51 (155)
20 2vh7_A Acylphosphatase-1; hydr 54.8 22 0.00074 25.1 4.9 56 94-157 24-79 (99)
21 1ulr_A Putative acylphosphatas 54.2 26 0.00088 24.2 5.1 56 94-158 18-73 (88)
22 1sh8_A Hypothetical protein PA 52.1 24 0.00082 25.1 4.8 43 79-130 3-45 (154)
23 1zwy_A Hypothetical UPF0244 pr 51.4 11 0.00038 30.2 3.2 43 69-112 47-91 (185)
24 3f5o_A Thioesterase superfamil 49.8 17 0.00059 25.8 3.7 43 84-133 6-50 (148)
25 2fhm_A Probable acylphosphatas 49.7 33 0.0011 23.8 5.1 58 94-160 18-75 (91)
26 1mwy_A ZNTA; open-faced beta-s 47.6 34 0.0012 20.4 4.4 33 120-157 4-37 (73)
27 2bjd_A Acylphosphatase; hypert 46.9 22 0.00075 25.4 3.9 58 94-160 30-87 (101)
28 1yjr_A Copper-transporting ATP 46.2 31 0.0011 20.3 4.0 34 119-157 4-38 (75)
29 3iwl_A Copper transport protei 46.1 16 0.00053 22.5 2.7 32 120-158 3-35 (68)
30 1q8l_A Copper-transporting ATP 45.3 48 0.0016 20.7 5.0 33 120-157 10-43 (84)
31 3r07_C Putative lipoate-protei 44.9 40 0.0014 23.6 5.0 39 108-146 16-56 (91)
32 2g9o_A Copper-transporting ATP 43.2 14 0.00047 24.1 2.2 33 119-156 3-36 (90)
33 2ew9_A Copper-transporting ATP 42.9 28 0.00097 23.6 3.9 32 120-156 5-37 (149)
34 1t6s_A Conserved hypothetical 41.5 32 0.0011 26.9 4.4 41 81-129 36-76 (162)
35 3zzp_A TS9, ribosomal protein 41.0 23 0.00078 24.5 3.1 21 80-100 55-75 (77)
36 2dpl_A GMP synthetase, GMP syn 40.2 1E+02 0.0034 25.4 7.5 73 81-156 201-295 (308)
37 1w2i_A Acylphosphatase; hydrol 40.1 31 0.0011 24.0 3.8 56 94-158 20-75 (91)
38 1cpz_A Protein (COPZ); copper 40.0 34 0.0012 19.6 3.4 31 122-157 3-34 (68)
39 1opz_A Potential copper-transp 39.4 54 0.0018 19.0 4.3 32 120-156 7-39 (76)
40 3mgj_A Uncharacterized protein 38.0 1.3E+02 0.0045 22.8 9.6 58 108-169 29-96 (118)
41 4ab4_A Xenobiotic reductase B; 38.0 1.9E+02 0.0065 24.7 9.1 72 22-93 79-155 (362)
42 2gv1_A Probable acylphosphatas 36.3 73 0.0025 22.0 5.2 48 105-160 30-78 (92)
43 2l3m_A Copper-ION-binding prot 36.2 38 0.0013 19.7 3.2 33 120-157 6-39 (71)
44 2aj0_A Probable cadmium-transp 36.0 42 0.0014 19.9 3.5 32 121-157 5-37 (71)
45 3trg_A Acylphosphatase; fatty 35.7 50 0.0017 23.4 4.3 56 94-158 28-83 (98)
46 2k02_A Ferrous iron transport 35.5 3.9 0.00013 29.2 -1.6 40 96-135 21-67 (87)
47 2kjw_A TS9, 30S ribosomal prot 35.5 19 0.00063 26.1 2.0 30 80-116 55-84 (96)
48 2pa8_D DNA-directed RNA polyme 35.4 78 0.0027 25.6 6.0 45 110-158 2-48 (265)
49 1cqm_A Ribosomal protein S6; a 35.4 49 0.0017 23.3 4.2 69 80-161 13-95 (101)
50 1kvi_A Copper-transporting ATP 35.2 62 0.0021 19.4 4.2 32 120-156 9-41 (79)
51 2qif_A Copper chaperone COPZ; 34.9 49 0.0017 18.5 3.5 32 121-157 4-36 (69)
52 2jsx_A Protein NAPD; TAT, proo 34.6 1.2E+02 0.0041 21.4 7.3 48 112-164 33-82 (95)
53 1osd_A MERP, hypothetical prot 34.2 57 0.0019 18.9 3.8 32 121-157 5-37 (72)
54 3gka_A N-ethylmaleimide reduct 33.8 1.5E+02 0.0051 25.3 7.8 78 22-99 87-170 (361)
55 2xmw_A PACS-N, cation-transpor 32.5 55 0.0019 18.8 3.5 32 121-157 5-37 (71)
56 2j5a_A 30S ribosomal protein S 31.9 57 0.0019 23.4 4.1 75 80-167 19-108 (110)
57 2hc5_A ORF 99, hypothetical pr 31.7 1.5E+02 0.0051 21.9 6.5 47 78-131 32-79 (117)
58 2ldi_A Zinc-transporting ATPas 30.8 63 0.0022 18.3 3.5 31 121-156 5-36 (71)
59 2ofg_X Zinc-transporting ATPas 30.2 55 0.0019 22.2 3.7 33 120-157 9-42 (111)
60 2i2q_A Cofilin; N-terminal ser 29.3 1.5E+02 0.0053 21.0 6.1 45 119-165 80-128 (137)
61 1gxu_A Hydrogenase maturation 29.1 54 0.0018 22.9 3.5 52 94-157 23-74 (91)
62 2z99_A Putative uncharacterize 28.4 61 0.0021 26.6 4.2 41 80-128 41-81 (219)
63 3na7_A HP0958; flagellar bioge 28.1 15 0.0005 29.7 0.4 26 120-146 193-218 (256)
64 2qwz_A Phenylacetic acid degra 27.9 87 0.003 22.8 4.6 43 81-133 24-66 (159)
65 3r3t_A 30S ribosomal protein S 27.7 46 0.0016 23.5 3.0 29 80-115 16-44 (99)
66 3cjk_B Copper-transporting ATP 27.3 59 0.002 19.2 3.1 32 121-157 4-36 (75)
67 1yg0_A COP associated protein; 27.3 48 0.0016 18.8 2.6 31 122-157 4-35 (66)
68 1y3j_A Copper-transporting ATP 27.2 66 0.0023 19.2 3.3 31 121-156 5-36 (77)
69 4b89_A General negative regula 27.2 30 0.001 29.3 2.2 20 21-40 171-190 (249)
70 1jww_A Potential copper-transp 27.1 49 0.0017 19.7 2.7 31 121-156 5-36 (80)
71 1fvq_A Copper-transporting ATP 26.9 62 0.0021 18.7 3.1 32 121-157 4-36 (72)
72 1tr0_A Stable protein 1; plant 26.7 1.4E+02 0.0048 20.4 5.3 39 119-158 11-50 (108)
73 2kt2_A Mercuric reductase; nme 26.5 74 0.0025 18.3 3.4 30 123-157 4-34 (69)
74 2roe_A Heavy metal binding pro 26.1 38 0.0013 19.8 2.0 30 123-157 4-34 (66)
75 2dir_A Thump domain-containing 25.6 1.6E+02 0.0056 20.0 8.6 40 119-160 32-74 (98)
76 1cc8_A Protein (metallochapero 25.4 78 0.0027 19.2 3.4 32 121-157 7-39 (73)
77 3q2b_A Pfadf1, cofilin/actin-d 25.0 1.5E+02 0.0051 21.4 5.4 55 109-165 64-123 (124)
78 4hde_A SCO1/SENC family lipopr 24.5 80 0.0027 22.9 3.9 53 108-160 22-79 (170)
79 3qae_A 3-hydroxy-3-methylgluta 24.3 3.8E+02 0.013 24.4 9.0 36 117-152 199-239 (458)
80 1aw0_A Menkes copper-transport 24.0 46 0.0016 19.3 2.1 31 121-156 5-36 (72)
81 2idl_A Hypothetical protein; c 23.6 1.7E+02 0.0058 21.2 5.5 50 109-159 59-116 (117)
82 2npb_A Selenoprotein W; struct 23.5 92 0.0032 22.3 4.0 29 129-157 10-39 (96)
83 3hcz_A Possible thiol-disulfid 23.2 57 0.002 21.6 2.7 28 108-135 21-49 (148)
84 1vg5_A RSGI RUH-014, rhomboid 23.1 57 0.0019 22.5 2.6 46 60-112 6-58 (73)
85 1xg8_A Hypothetical protein SA 23.0 89 0.003 23.8 3.9 37 121-157 8-56 (111)
86 3e8p_A Uncharacterized protein 23.0 1E+02 0.0036 22.6 4.3 30 94-132 31-60 (164)
87 2xmm_A SSR2857 protein, ATX1; 22.9 73 0.0025 17.8 2.8 31 122-157 4-35 (64)
88 2kkh_A Putative heavy metal tr 22.4 1.4E+02 0.0049 18.9 4.5 31 121-156 18-49 (95)
89 2lxf_A Uncharacterized protein 22.4 1.5E+02 0.0051 22.1 5.0 56 94-158 50-108 (121)
90 2wte_A CSA3; antiviral protein 22.0 88 0.003 25.2 4.0 28 83-117 46-74 (244)
91 2zmf_A CAMP and CAMP-inhibited 21.8 1.7E+02 0.0058 19.7 4.9 36 83-125 30-65 (189)
92 1cnu_A Actophorin, ADF, cofili 21.5 2.2E+02 0.0076 20.1 6.3 44 119-164 78-125 (137)
93 4gmj_A CCR4-NOT transcription 21.3 42 0.0014 27.9 2.0 18 22-39 149-166 (229)
94 1rq8_A Conserved hypothetical 21.2 2.4E+02 0.0083 20.5 6.5 46 88-154 31-76 (104)
95 2qn6_B Translation initiation 21.0 81 0.0028 22.5 3.2 27 81-114 65-91 (93)
96 3b49_A LIN2189 protein; BIG 86 20.7 2.1E+02 0.0071 21.6 5.7 58 81-146 114-173 (211)
97 3gl3_A Putative thiol:disulfid 20.7 63 0.0022 21.7 2.5 41 108-150 18-59 (152)
98 1aps_A Acylphosphatase; hydrol 20.6 14 0.00047 26.1 -1.0 40 105-151 33-72 (98)
99 1q4r_A Protein AT3G17210; cent 20.6 1.7E+02 0.0057 20.3 4.8 38 119-157 13-51 (112)
100 1p6t_A Potential copper-transp 20.5 92 0.0032 21.2 3.3 31 121-156 8-39 (151)
101 3cgi_A Propanediol utilization 20.1 1.2E+02 0.0039 22.9 4.0 33 108-144 67-99 (124)
No 1
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=99.93 E-value=1.1e-25 Score=165.03 Aligned_cols=73 Identities=25% Similarity=0.280 Sum_probs=68.7
Q ss_pred ccHHHHHHHHHHHHHHHhhccccCcCCcccEEEEEecCCeEEEEEeecCCCch---hhHHHHHHHHHHHhCCCceEEEec
Q 030939 81 LTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKR---STVIARLANYLKQRIPEILEVDIE 157 (169)
Q Consensus 81 LteE~Ve~VLeeiRP~L~~Df~~~vGiGGDVELVdvdgg~VkVrL~GaC~~Cp---~Tlk~gIE~~Lke~IPEI~~V~i~ 157 (169)
-+.++|+++|++|||+|++| ||||||+++++++|+|||+|||++|| +|||++||+.|++++|||+.|+.+
T Consensus 7 ~~~~~I~~~L~~IRP~L~~d-------GGdvelv~v~~g~V~V~L~GaC~gCpss~~TLk~gIE~~L~~~vPev~~V~~v 79 (88)
T 1xhj_A 7 TMFDQVAEVIERLRPFLLRD-------GGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEVEQV 79 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-------SCEEEEEECCSSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEEEEE
T ss_pred HHHHHHHHHHHHhcHHHHhc-------CCeEEEEEEECCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCceEEEec
Confidence 35899999999999999999 99999999999999999999999999 899999999999999999999876
Q ss_pred CCc
Q 030939 158 DEK 160 (169)
Q Consensus 158 d~~ 160 (169)
..+
T Consensus 80 ~~~ 82 (88)
T 1xhj_A 80 FLE 82 (88)
T ss_dssp ECC
T ss_pred ccc
Confidence 543
No 2
>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1
Probab=99.92 E-value=2.9e-26 Score=163.39 Aligned_cols=71 Identities=34% Similarity=0.487 Sum_probs=68.5
Q ss_pred ccccHHHHHHHHHHHHHHHhhccccCcCCc-ccEEEEEecCCeEEEEEeecCCCchhhHHHHHHHHHHHhCCCceEEEec
Q 030939 79 LDLTEDNVRQVIADARGELAQLFDTSVGIT-GVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIPEILEVDIE 157 (169)
Q Consensus 79 l~LteE~Ve~VLeeiRP~L~~Df~~~vGiG-GDVELVdvdgg~VkVrL~GaC~~Cp~Tlk~gIE~~Lke~IPEI~~V~i~ 157 (169)
+++++++|+++|++|||+|++| | ||+||+++++++|+|||+|+|++| +|++++||+.|++++|||++|+.+
T Consensus 2 ~~~~~~~V~~~L~~iRP~L~~d-------GGGdvelv~v~~g~V~v~l~GaC~gc-~Tlk~gIe~~L~~~vpei~~V~~v 73 (74)
T 1th5_A 2 LELNEENVEKVLNEIRPYLAGT-------GGGGLQFLMIKGPIVKVRLTGPAAVV-RTVRIAVSKKLREKIPSIQIVQLL 73 (74)
T ss_dssp CCCSHHHHHHHHTTTHHHHTTT-------TCCCCCCCEEETTEEEECCCSSSSSS-SSHHHHHHHHHHHHCTTCSEEEEC
T ss_pred hhHHHHHHHHHHHHHhHHHHhc-------CCCcEEEEEEeCCEEEEEEecCCcch-HHHHHHHHHHHHHHCCCCcEEEeC
Confidence 5789999999999999999999 7 999999999999999999999999 999999999999999999999876
No 3
>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1
Probab=99.90 E-value=5.2e-24 Score=157.05 Aligned_cols=73 Identities=18% Similarity=0.231 Sum_probs=68.3
Q ss_pred ccccHHHHHHHHHH-HHHHHhhccccCcCCcccEEEEEecCCeEEEEEeecCCCch---hhHHHHHHHHHHHhCCCceEE
Q 030939 79 LDLTEDNVRQVIAD-ARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKR---STVIARLANYLKQRIPEILEV 154 (169)
Q Consensus 79 l~LteE~Ve~VLee-iRP~L~~Df~~~vGiGGDVELVdvdgg~VkVrL~GaC~~Cp---~Tlk~gIE~~Lke~IPEI~~V 154 (169)
-+-..+.|+++|++ |||+|++| ||||||+++++++|+|||+|+|.+|| +|||++||+.|++++|||++|
T Consensus 11 d~~~~~~I~~~L~~~IRP~L~~d-------GGdvelv~v~~g~V~v~l~GaC~gC~ss~~Tlk~gIE~~L~~~vpev~~V 83 (92)
T 1veh_A 11 DDEVVAMIKELLDTRIRPTVQED-------GGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGV 83 (92)
T ss_dssp CCHHHHHHHHHHHHTTHHHHHHH-------SCCCCEEEEETTEEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCSSCCCE
T ss_pred chHHHHHHHHHHHHHhhHHHHhc-------CCeEEEEEEeCCEEEEEEeecCCCCCCcHHHHHHHHHHHHHHHCCCCCEE
Confidence 34458899999996 99999999 99999999999999999999999999 899999999999999999999
Q ss_pred EecC
Q 030939 155 DIED 158 (169)
Q Consensus 155 ~i~d 158 (169)
+.+.
T Consensus 84 ~~v~ 87 (92)
T 1veh_A 84 EQVS 87 (92)
T ss_dssp EECS
T ss_pred EEcC
Confidence 9764
No 4
>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A
Probab=99.89 E-value=1.5e-23 Score=165.94 Aligned_cols=76 Identities=30% Similarity=0.469 Sum_probs=71.1
Q ss_pred CCCCCccccHHHHHHHHHHHHHHHhh-ccccCcCCcccEEEEEecCCeEEEEEeecCCCchhhHHHHHHHHHHHhCCCce
Q 030939 74 VPPPPLDLTEDNVRQVIADARGELAQ-LFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIPEIL 152 (169)
Q Consensus 74 ~~~~~l~LteE~Ve~VLeeiRP~L~~-Df~~~vGiGGDVELVdvdgg~VkVrL~GaC~~Cp~Tlk~gIE~~Lke~IPEI~ 152 (169)
.+...+++|+|+|+++||++||+|++ | |||+|||+++|++|+|||+|+|++| +|++++||+.||+++|||+
T Consensus 78 ~~~e~l~L~~~~v~~~L~~iRP~L~~~d-------GGdvelv~v~~~~v~v~l~Gac~~~-~Tlk~~Ie~~l~e~vP~i~ 149 (154)
T 2z51_A 78 DEETGLELNEENIEKVLEEIRPYLIGTA-------DGSLDLVEIEDPIVKIRITGPAAGV-MTVRVAVTQKLREKIPSIA 149 (154)
T ss_dssp SSCCSCCSSHHHHHHHHHHHGGGCCGGG-------CCEEEEEEEETTEEEEEEESGGGGC-HHHHHHHHHHHHHHCTTCC
T ss_pred CchhhhHHHHHHHHHHHHHHHHHhhhcC-------CCCeEEEEEECCEEEEEEecCCccc-HhHHHHHHHHHHHHCCCcc
Confidence 34556789999999999999999998 9 9999999999999999999999999 8999999999999999999
Q ss_pred EEEec
Q 030939 153 EVDIE 157 (169)
Q Consensus 153 ~V~i~ 157 (169)
+|+..
T Consensus 150 ~V~~~ 154 (154)
T 2z51_A 150 AVQLI 154 (154)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99863
No 5
>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A
Probab=99.89 E-value=2.6e-23 Score=164.65 Aligned_cols=73 Identities=32% Similarity=0.447 Sum_probs=69.9
Q ss_pred ccccHHHHHHHHHHHHHHHhhccccCcCCcccEEEEEecCCeEEEEEeecCCCch---hhHHHHHHHHHHHhCCCceEEE
Q 030939 79 LDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKR---STVIARLANYLKQRIPEILEVD 155 (169)
Q Consensus 79 l~LteE~Ve~VLeeiRP~L~~Df~~~vGiGGDVELVdvdgg~VkVrL~GaC~~Cp---~Tlk~gIE~~Lke~IPEI~~V~ 155 (169)
+++++|+|+++|++|||+|++| ||||||+++++++|+|||+|+|++|| +|++.+||+.|++++||++.|+
T Consensus 2 ~~~~~e~v~~~L~~iRP~l~~d-------GGdvelv~v~~~~V~v~l~GaC~gC~ss~~Tlk~~Ie~~L~~~vpev~~V~ 74 (154)
T 2z51_A 2 VPLTEENVESVLDEIRPYLMSD-------GGNVALHEIDGNVVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPEIVAVE 74 (154)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHT-------TEEEEEEEEETTEEEEEEEHHHHTCHHHHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred CcchHHHHHHHHHHhChHHHhc-------CCeEEEEEEECCEEEEEEECCCCCCCccHhHHHHHHHHHHHHhCCCceEEE
Confidence 4689999999999999999999 99999999999999999999999999 7999999999999999999999
Q ss_pred ecC
Q 030939 156 IED 158 (169)
Q Consensus 156 i~d 158 (169)
.+.
T Consensus 75 ~v~ 77 (154)
T 2z51_A 75 ALP 77 (154)
T ss_dssp ECC
T ss_pred Ecc
Confidence 764
No 6
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=98.38 E-value=5.1e-07 Score=65.07 Aligned_cols=72 Identities=18% Similarity=0.140 Sum_probs=61.4
Q ss_pred ccHHHHHHHHHHH-HHHHhhccccCcCCcccEEEEEecCCeEEEEEeecCCCch--hhHHHHHHHHHHHhCCCceEEEec
Q 030939 81 LTEDNVRQVIADA-RGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKR--STVIARLANYLKQRIPEILEVDIE 157 (169)
Q Consensus 81 LteE~Ve~VLeei-RP~L~~Df~~~vGiGGDVELVdvdgg~VkVrL~GaC~~Cp--~Tlk~gIE~~Lke~IPEI~~V~i~ 157 (169)
.++++|.++|.++ -|.|..+ +-=-|-|.=|+++|+.|.|.|+-.+.+|| .+++..|+++|+ .+|++.+|++.
T Consensus 6 ~~~~~V~~aL~~V~DPel~~~----iv~lG~V~~v~v~~~~V~v~l~lt~~~cp~~~~l~~~i~~al~-~l~gv~~V~V~ 80 (103)
T 3cq1_A 6 PLEAQAWALLEAVYDPELGLD----VVNLGLIYDLVVEPPRAYVRMTLTTPGCPLHDSLGEAVRQALS-RLPGVEEVEVE 80 (103)
T ss_dssp HHHHHHHHHHTTCBCTTTCSB----TTTTTCEEEEEEETTEEEEEECCSSSSCCSSCHHHHHHHHHHH-TSTTCCEEEEE
T ss_pred hHHHHHHHHHhCCCCCCCCcC----chhcCceEEEEEECCEEEEEEEECCCCCcHHHHHHHHHHHHHH-hCCCceeEEEE
Confidence 4688999999986 8999888 11137888899998999999999999999 789999999997 68999888764
No 7
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=98.02 E-value=7.7e-06 Score=58.73 Aligned_cols=72 Identities=18% Similarity=0.191 Sum_probs=59.3
Q ss_pred ccHHHHHHHHHHH-HHHHhhccccCcCCcccEEEEEecC-CeEEEEEeecCCCch--hhHHHHHHHHHHHhCCCceEEEe
Q 030939 81 LTEDNVRQVIADA-RGELAQLFDTSVGITGVAELAELDG-PFVKIRLRGRFWHKR--STVIARLANYLKQRIPEILEVDI 156 (169)
Q Consensus 81 LteE~Ve~VLeei-RP~L~~Df~~~vGiGGDVELVdvdg-g~VkVrL~GaC~~Cp--~Tlk~gIE~~Lke~IPEI~~V~i 156 (169)
+++++|.++|.++ =|.|..+ +-=-|-|.=|++++ +.|.|.|+-.+.+|| ..++..|+++|+ .+|++.+|++
T Consensus 6 ~~~~~V~~aL~~V~DPel~~~----iv~lG~V~~v~v~~~~~V~v~l~lt~~~cp~~~~l~~~i~~al~-~l~gv~~v~V 80 (103)
T 1uwd_A 6 VTKEDVLNALKNVIDFELGLD----VVSLGLVYDIQIDDQNNVKVLMTMTTPMCPLAGMILSDAEEAIK-KIEGVNNVEV 80 (103)
T ss_dssp CCHHHHHHHHTTCBCTTTSSB----TTTTTCCCCEEECTTCEEEEEECCSSSCCSSHHHHHHHHHHHHH-TSSSCCEEEE
T ss_pred chHHHHHHHHcCCCCCCCCcC----hhhcCCeeEEEEcCCCEEEEEEEECCCCCcHHHHHHHHHHHHHH-hCCCcceEEE
Confidence 5789999999998 4998887 11136677788875 899999999999999 789999999997 5899988876
Q ss_pred c
Q 030939 157 E 157 (169)
Q Consensus 157 ~ 157 (169)
.
T Consensus 81 ~ 81 (103)
T 1uwd_A 81 E 81 (103)
T ss_dssp E
T ss_pred E
Confidence 4
No 8
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=97.62 E-value=3.7e-05 Score=56.05 Aligned_cols=74 Identities=14% Similarity=0.160 Sum_probs=59.6
Q ss_pred cccHHHHHHHHHHH-HHHHhhccccCcCCcccEEEEEecC-CeEEEEEeecCCCch--hhHHHHHHHHHHHhCCCceEEE
Q 030939 80 DLTEDNVRQVIADA-RGELAQLFDTSVGITGVAELAELDG-PFVKIRLRGRFWHKR--STVIARLANYLKQRIPEILEVD 155 (169)
Q Consensus 80 ~LteE~Ve~VLeei-RP~L~~Df~~~vGiGGDVELVdvdg-g~VkVrL~GaC~~Cp--~Tlk~gIE~~Lke~IPEI~~V~ 155 (169)
+.++++|.++|..+ -|.+..+ +.=-|-|.=|++++ +.|.|.|+-.+.+|| ..++..|+++|++.+|++.+|+
T Consensus 7 ~~~~~~V~~aL~~V~DPe~~~~----Iv~lG~V~~I~v~~~~~V~V~ltlt~p~cp~~~~i~~~i~~al~~~l~Gv~~V~ 82 (108)
T 3lno_A 7 EAFENKLYANLEAVIDPELGVD----IVNLGLVYDVTADENNNAVITMTMTSIGCPMAGQIVSDVKKVLSTNVPEVNEIE 82 (108)
T ss_dssp HHHHHHHHHHGGGCEETTTTEE----HHHHTCEEEEEECTTCCEEEEECCSCTTCTTHHHHHHHHHHHHHHHCTTCCCEE
T ss_pred hhhHHHHHHHHcCCCCCCCCCC----HHHcCCceEEEECCCCeEEEEEEECCCCCcHHHHHHHHHHHHHHHhCCCCceEE
Confidence 35678888888776 7777655 11147788899975 999999999999999 7889999999988899998887
Q ss_pred ec
Q 030939 156 IE 157 (169)
Q Consensus 156 i~ 157 (169)
+.
T Consensus 83 V~ 84 (108)
T 3lno_A 83 VN 84 (108)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 9
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A
Probab=74.97 E-value=4.6 Score=33.24 Aligned_cols=48 Identities=19% Similarity=0.127 Sum_probs=39.1
Q ss_pred EEecCCeEEEEEeecCCCch--hhHHHHHHHHHHHhCCCceEEEecCCcc
Q 030939 114 AELDGPFVKIRLRGRFWHKR--STVIARLANYLKQRIPEILEVDIEDEKQ 161 (169)
Q Consensus 114 Vdvdgg~VkVrL~GaC~~Cp--~Tlk~gIE~~Lke~IPEI~~V~i~d~~q 161 (169)
++++++.++|.+--.+..=. +..|..|.+-|.+.++++.+|+.++.-+
T Consensus 172 ~~~~~~~~~i~~p~~~~~~~~~~~~k~~~~~~i~~~~~~~~~v~~~e~~~ 221 (231)
T 3prb_A 172 VTIRNGTVKIELPEFAPFIPNIQTAKMAIANEILKRLEDAEKVSFVETFE 221 (231)
T ss_dssp EEEETTEEEEECCTTGGGSTTHHHHHHHHHHHHHHHCTTCCEEEEEEEEE
T ss_pred EEEeCCeEEEEcCHHHhhhhHHHHHHHHHHHHHHHhccccceEEEEEEEe
Confidence 67889999999887655444 7889999999999999999998765433
No 10
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=71.37 E-value=6.8 Score=24.46 Aligned_cols=32 Identities=13% Similarity=0.189 Sum_probs=24.0
Q ss_pred eEEEEEee-cCCCchhhHHHHHHHHHHHhCCCceEEEec
Q 030939 120 FVKIRLRG-RFWHKRSTVIARLANYLKQRIPEILEVDIE 157 (169)
Q Consensus 120 ~VkVrL~G-aC~~Cp~Tlk~gIE~~Lke~IPEI~~V~i~ 157 (169)
.+.+++.| .|.+|..+ ||+.|++ |+|..|.+.
T Consensus 6 ~~~~~v~gm~C~~C~~~----ie~~l~~--~gv~~~~v~ 38 (73)
T 3fry_A 6 KIVLELSGLSCHHCVAR----VKKALEE--AGAKVEKVD 38 (73)
T ss_dssp EEEEEEESSBCGGGHHH----HHHHHHH--TTCEEEEEC
T ss_pred EEEEEECCCCCHHHHHH----HHHHhcc--CCcEEEEEE
Confidence 36678888 69999754 5677777 999877764
No 11
>3hdu_A Putative thioesterase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 2.50A {Syntrophus aciditrophicus SB}
Probab=67.55 E-value=24 Score=25.75 Aligned_cols=47 Identities=11% Similarity=0.020 Sum_probs=31.5
Q ss_pred CCccccHHHHHHHHHHH-H---HHHhhccccCcCCcccEEEEEecCCeEEEEEeecCCCc
Q 030939 77 PPLDLTEDNVRQVIADA-R---GELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHK 132 (169)
Q Consensus 77 ~~l~LteE~Ve~VLeei-R---P~L~~Df~~~vGiGGDVELVdvdgg~VkVrL~GaC~~C 132 (169)
|.++++++++.+.|.+. . |+.+.. | +++++++++.+.+++.-.=.+|
T Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~p~~~~l-------G--~~~~~~~~g~~~~~~~~~~~~~ 53 (157)
T 3hdu_A 3 PNFSKNEEVLFSAVNEIFEEKIPFNKII-------G--LKVRFISPEQVKLSFEMRDELI 53 (157)
T ss_dssp ---CHHHHHHHHHHHHHHHTSCGGGGTE-------E--EEEEEECSSEEEEEEEESSCCT
T ss_pred CccccChHHHHHHHHHHhhcCCcHHHhc-------C--CEEEEecCCEEEEEEECCHHHh
Confidence 45677777766666542 2 555444 2 8899999999999998876665
No 12
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=65.12 E-value=6.3 Score=24.25 Aligned_cols=32 Identities=9% Similarity=0.190 Sum_probs=22.6
Q ss_pred eEEEEEee-cCCCchhhHHHHHHHHHHHhCCCceEEEe
Q 030939 120 FVKIRLRG-RFWHKRSTVIARLANYLKQRIPEILEVDI 156 (169)
Q Consensus 120 ~VkVrL~G-aC~~Cp~Tlk~gIE~~Lke~IPEI~~V~i 156 (169)
.+.+++.| .|.+|...+. +.|+ ++|+|..|.+
T Consensus 3 ~~~~~v~gm~C~~C~~~ie----~~l~-~~~gv~~~~v 35 (74)
T 3dxs_X 3 KIQVGVTGMTCAACSNSVE----AALM-NVNGVFKASV 35 (74)
T ss_dssp EEEEEEECCCSHHHHHHHH----HHHH-TSTTEEEEEE
T ss_pred EEEEEECCcCCHHHHHHHH----HHHh-cCCCEEEEEE
Confidence 35677888 7888876554 5554 5899977765
No 13
>1u14_A Hypothetical UPF0244 protein YJJX; structural genomics, protein structure initiative, PSI, midwest center for structural genomics, MCSG; 1.68A {Salmonella typhimurium} SCOP: c.51.4.3 PDB: 1u5w_A
Probab=61.31 E-value=6.2 Score=31.33 Aligned_cols=43 Identities=19% Similarity=0.187 Sum_probs=35.7
Q ss_pred cccCCCCCCCccccHHHHHHHHHHHHHHHhh--ccccCcCCcccEE
Q 030939 69 TAAGGVPPPPLDLTEDNVRQVIADARGELAQ--LFDTSVGITGVAE 112 (169)
Q Consensus 69 ~~~~~~~~~~l~LteE~Ve~VLeeiRP~L~~--Df~~~vGiGGDVE 112 (169)
++.++++++|+.. +|.++.+++.++-.++. +.|.+|||-|.|+
T Consensus 37 ~v~SgV~~QP~g~-eET~~GA~nRa~~a~~~~~~ad~~VGiEgGv~ 81 (172)
T 1u14_A 37 AVESGVPEQPFGS-EETRAGARNRVDNARRLHPQADFWVAIEAGID 81 (172)
T ss_dssp CCCCSSCSSCBSH-HHHHHHHHHHHHHHHHHSTTCSEEEEEEEEEE
T ss_pred cCCCCcCCCCCCH-HHHHHHHHHHHHHHHhhCCCCCEEEEEcceec
Confidence 4668889999863 88999999999888886 5778899888776
No 14
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=60.98 E-value=9.6 Score=22.96 Aligned_cols=33 Identities=12% Similarity=0.331 Sum_probs=23.2
Q ss_pred eEEEEEee-cCCCchhhHHHHHHHHHHHhCCCceEEEec
Q 030939 120 FVKIRLRG-RFWHKRSTVIARLANYLKQRIPEILEVDIE 157 (169)
Q Consensus 120 ~VkVrL~G-aC~~Cp~Tlk~gIE~~Lke~IPEI~~V~i~ 157 (169)
.+.+++.| .|.+|..++. +.|+ ++|+|..|.+.
T Consensus 3 ~~~~~v~gm~C~~C~~~i~----~~l~-~~~gv~~~~v~ 36 (69)
T 4a4j_A 3 TINLQLEGMDCTSCASSIE----RAIA-KVPGVQSCQVN 36 (69)
T ss_dssp EEEEEEESCCSHHHHHHHH----HHHH-TSTTEEEEEEE
T ss_pred EEEEEECCeecHHHHHHHH----HHHh-cCCCeEEEEEE
Confidence 46778888 6888886554 5554 48999877653
No 15
>3ux2_A MIP18 family protein FAM96A; immune system, DUF59, 3D domain swapping, protein-protein interaction, alpha and beta protein (A+B); HET: MSE; 1.80A {Homo sapiens} PDB: 3ux3_A
Probab=59.98 E-value=6.9 Score=30.11 Aligned_cols=40 Identities=20% Similarity=0.172 Sum_probs=33.3
Q ss_pred cCCeEEEEEeecCCCch--hhHHHHHHHHHHHhCCCceEEEe
Q 030939 117 DGPFVKIRLRGRFWHKR--STVIARLANYLKQRIPEILEVDI 156 (169)
Q Consensus 117 dgg~VkVrL~GaC~~Cp--~Tlk~gIE~~Lke~IPEI~~V~i 156 (169)
+++.|.|.++=.=.||| ..+...|+..|++.+|...+|++
T Consensus 48 ~~~~V~V~~TPT~p~Cp~a~~I~l~Ir~kL~~~lp~~~kV~v 89 (130)
T 3ux2_A 48 EEYLVIIRFTPTVPHCSLATLIGLCLRVKLQRCLPFKHKLEI 89 (130)
T ss_dssp TEEEEEECCCCCCCSSCHHHHHHHHHHHHHHHHCSSCCCCCC
T ss_pred CCCeEEEEEEeCCCCCCchHHHHHHHHHHHHHhCCCceEEEE
Confidence 35679999999999999 55667799999999999877664
No 16
>1urr_A CG18505 protein; acylphosphatase, enzyme; 1.5A {Drosophila melanogaster} SCOP: d.58.10.1
Probab=59.93 E-value=17 Score=25.88 Aligned_cols=61 Identities=15% Similarity=0.181 Sum_probs=37.7
Q ss_pred HHHHhhccccCcCCcccEEEEEecCCeEEEEEeecCCCchhhHHHHHHHHHHHhCCCceEEEecCCccc
Q 030939 94 RGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIPEILEVDIEDEKQL 162 (169)
Q Consensus 94 RP~L~~Df~~~vGiGGDVELVdvdgg~VkVrL~GaC~~Cp~Tlk~gIE~~Lke~IPEI~~V~i~d~~ql 162 (169)
||+.... -...|+.|-|. ...||.|.+.++|. +..+. ...++|+++-|....|+-.+.+++
T Consensus 27 R~~v~~~-A~~lgL~G~V~--N~~dG~Vei~~eG~----~~~l~-~f~~~l~~~gP~~a~V~~v~~~~~ 87 (102)
T 1urr_A 27 RKHTSHE-AKRLGVRGWCM--NTRDGTVKGQLEAP----MMNLM-EMKHWLENNRIPNAKVSKAEFSQI 87 (102)
T ss_dssp HHHHHHH-HHHHTCEEEEE--ECTTSCEEEEEEEC----HHHHH-HHHHHHHHCCSTTCEEEEEEECCC
T ss_pred hHHHHHH-HHHhCCcEEEE--ECCCCCEEEEEEcC----HHHHH-HHHHHHHhcCCCccEEEEEEEEEe
Confidence 5555443 23457888743 56688999999997 33344 445777766776555554433333
No 17
>1xcr_A Hypothetical protein PTD012; structural genomics, zinc-containing fold, splice variant, A buffer, metal binding protein; 1.70A {Homo sapiens} SCOP: d.290.1.2
Probab=59.77 E-value=5 Score=35.30 Aligned_cols=58 Identities=12% Similarity=0.161 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhhccc-cCcCCcccEEEEEecCCeEEEEEeecCCCchhhHHHHHHHHHHHh
Q 030939 88 QVIADARGELAQLFD-TSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQR 147 (169)
Q Consensus 88 ~VLeeiRP~L~~Df~-~~vGiGGDVELVdvdgg~VkVrL~GaC~~Cp~Tlk~gIE~~Lke~ 147 (169)
..++-||-.|.++|| ..||+||.+ .-++.|.++..+-=.++.||..-.+-|.+||+-.
T Consensus 184 ~fv~ciR~~L~~~Yg~~~VgL~GGv--Flik~Gkak~HVMpdFs~~Pl~s~e~vn~WLkf~ 242 (316)
T 1xcr_A 184 NFVTCMRETLEKHYGNKPIGMGGTF--IIQKGKVKSHIMPAEFSSCPLNSDEEVNKWLHFY 242 (316)
T ss_dssp CHHHHHHHHHHHHHTTSCCEEEEEE--EEEESEEEEEECCSSCCSSCCCSHHHHHHHSEEE
T ss_pred cHHHHHHHHHHHHcCcceeeecceE--EEEecCcEEEEeCCCCCCCCCCCHHHHHhhhheE
Confidence 345567888999886 789994443 3357899999999999999977777888998743
No 18
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=55.09 E-value=51 Score=22.99 Aligned_cols=61 Identities=16% Similarity=0.153 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhccccCcCCcccEEEEEe----cCCeEEEEEeecCCCc-h----hhHHHHHHHHHHHhCCCceEEEe
Q 030939 89 VIADARGELAQLFDTSVGITGVAELAEL----DGPFVKIRLRGRFWHK-R----STVIARLANYLKQRIPEILEVDI 156 (169)
Q Consensus 89 VLeeiRP~L~~Df~~~vGiGGDVELVdv----dgg~VkVrL~GaC~~C-p----~Tlk~gIE~~Lke~IPEI~~V~i 156 (169)
.+++|+-.|.+. .|-..+-++ .|+.+.+.+.=....- + -.+...|++.|++++|+|..|.+
T Consensus 11 ~~~~I~~~l~~~-------~gV~~vh~lr~r~~G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~~~i~~vtI 80 (107)
T 2zzt_A 11 MYDDIFAVLERF-------PNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDDIEDVTI 80 (107)
T ss_dssp HHHHHHHHHTTC-------SSCEEEEEEEEECSCC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred HHHHHHHHHHcC-------CCccccEEEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEE
Confidence 345556666666 555555554 3443333322222111 1 35777899999999998766554
No 19
>1t82_A Hypothetical acetyltransferase; structural genomics, alpha-beta dimeric protein with A fold resembling A hotdog, PSI; 1.70A {Shewanella oneidensis} SCOP: d.38.1.5
Probab=55.00 E-value=15 Score=27.15 Aligned_cols=42 Identities=7% Similarity=-0.072 Sum_probs=30.6
Q ss_pred CccccHHHHHHHHHHHHHHHhhccccCcCCcccEEEEEecCCeEEEEEeec
Q 030939 78 PLDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGR 128 (169)
Q Consensus 78 ~l~LteE~Ve~VLeeiRP~L~~Df~~~vGiGGDVELVdvdgg~VkVrL~Ga 128 (169)
.++.+.+.+++.+.+--|+.+.. ++++++++++.++++|.=.
T Consensus 10 ~~~~~~~~l~~~~~~~~P~~~~l---------Gi~i~~~~~g~~~~~~~~~ 51 (155)
T 1t82_A 10 HMDELLNRLRQTWHSTIPVSEFM---------QIAPLSFTDGELSVSAPLA 51 (155)
T ss_dssp -CHHHHHHHHHHHHHHCHHHHHT---------TCEEEEEETTEEEEECCSG
T ss_pred hhhHHHHHHHHHHHhhCCcHHhC---------ceEEEEEeCCEEEEEEECc
Confidence 34556677777776656777766 4799999999999998633
No 20
>2vh7_A Acylphosphatase-1; hydrolase, acetylation; 1.45A {Homo sapiens} PDB: 2w4c_A 2w4p_A 2k7k_A 2k7j_A 2acy_A
Probab=54.79 E-value=22 Score=25.13 Aligned_cols=56 Identities=21% Similarity=0.274 Sum_probs=35.4
Q ss_pred HHHHhhccccCcCCcccEEEEEecCCeEEEEEeecCCCchhhHHHHHHHHHHHhCCCceEEEec
Q 030939 94 RGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIPEILEVDIE 157 (169)
Q Consensus 94 RP~L~~Df~~~vGiGGDVELVdvdgg~VkVrL~GaC~~Cp~Tlk~gIE~~Lke~IPEI~~V~i~ 157 (169)
||+.... -...|+.|-|. ...||.|.+.++|. +..+. ...++|++.-|....|+-.
T Consensus 24 R~~v~~~-A~~lgL~G~V~--N~~dG~Vei~~eG~----~~~v~-~f~~~l~~~~p~~a~V~~v 79 (99)
T 2vh7_A 24 RKHTQAE-GKKLGLVGWVQ--NTDRGTVQGQLQGP----ISKVR-HMQEWLETRGSPKSHIDKA 79 (99)
T ss_dssp HHHHHHH-HHHTTCEEEEE--ECTTSCEEEEEEEE----HHHHH-HHHHHHHHTCSTTCEEEEE
T ss_pred HHHHHHH-HHHcCCcEEEE--ECCCCCEEEEEEcC----HHHHH-HHHHHHHhcCCCceEEEEE
Confidence 5555443 23468888743 55688999999998 33344 4557777767765444433
No 21
>1ulr_A Putative acylphosphatase; hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: d.58.10.1
Probab=54.20 E-value=26 Score=24.23 Aligned_cols=56 Identities=21% Similarity=0.315 Sum_probs=35.5
Q ss_pred HHHHhhccccCcCCcccEEEEEecCCeEEEEEeecCCCchhhHHHHHHHHHHHhCCCceEEEecC
Q 030939 94 RGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIPEILEVDIED 158 (169)
Q Consensus 94 RP~L~~Df~~~vGiGGDVELVdvdgg~VkVrL~GaC~~Cp~Tlk~gIE~~Lke~IPEI~~V~i~d 158 (169)
||+.... -...|+.|-|. ...||.|.+.++|. +..+. ...++|+ +-|....|+-.+
T Consensus 18 R~~v~~~-A~~lgl~G~V~--N~~dG~Vei~~eG~----~~~i~-~f~~~l~-~gP~~a~V~~v~ 73 (88)
T 1ulr_A 18 RAFAQKK-ALELGLSGYAE--NLPDGRVEVVAEGP----KEALE-LFLHHLK-QGPRLARVEAVE 73 (88)
T ss_dssp HHHHHHH-HHHTTCEEEEE--ECTTSCEEEEEESC----HHHHH-HHHHHHH-HCSTTCEEEEEE
T ss_pred HHHHHHH-HHHcCCeEEEE--ECCCCcEEEEEEeC----HHHHH-HHHHHHH-hCCCCcEEEEEE
Confidence 5555443 23468888754 55788999999997 33444 4446777 567655554433
No 22
>1sh8_A Hypothetical protein PA5026; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.50A {Pseudomonas aeruginosa} SCOP: d.38.1.5
Probab=52.08 E-value=24 Score=25.09 Aligned_cols=43 Identities=14% Similarity=0.210 Sum_probs=34.3
Q ss_pred ccccHHHHHHHHHHHHHHHhhccccCcCCcccEEEEEecCCeEEEEEeecCC
Q 030939 79 LDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFW 130 (169)
Q Consensus 79 l~LteE~Ve~VLeeiRP~L~~Df~~~vGiGGDVELVdvdgg~VkVrL~GaC~ 130 (169)
|.++.+.+++.+..--|+.+.. | +++++++++.+.+++.=.-.
T Consensus 3 ~~~~~~~~~~~~~~~~p~~~~l-------g--~~~~~~~~~~~~~~~~~~~~ 45 (154)
T 1sh8_A 3 MPLPTELARHLTEEKIAFVQRS-------G--LRAEVLEPGYVRLRMPGAGN 45 (154)
T ss_dssp CSSCHHHHHHHHHHSSHHHHHH-------T--CEEEEEETTEEEEEECSTTC
T ss_pred CCcCHHHHHHHhhccCCchhhc-------c--eEEEEEeCCeEEEEccCCcc
Confidence 5678899999998777988888 3 67888888899988865544
No 23
>1zwy_A Hypothetical UPF0244 protein VC0702; hypothetical protein, structural genomics, PSI, protein STRU initiative; 1.90A {Vibrio cholerae} SCOP: c.51.4.3 PDB: 1zno_A
Probab=51.38 E-value=11 Score=30.22 Aligned_cols=43 Identities=16% Similarity=0.222 Sum_probs=35.1
Q ss_pred cccCCCCCCCccccHHHHHHHHHHHHHHHhh--ccccCcCCcccEE
Q 030939 69 TAAGGVPPPPLDLTEDNVRQVIADARGELAQ--LFDTSVGITGVAE 112 (169)
Q Consensus 69 ~~~~~~~~~~l~LteE~Ve~VLeeiRP~L~~--Df~~~vGiGGDVE 112 (169)
++.++++++|+.. +|.++.+++.++-.++. +.|.+|||-|.|+
T Consensus 47 ~v~SgV~~QP~g~-eET~~GA~nRa~~a~~~~~~ad~~VGiEgGv~ 91 (185)
T 1zwy_A 47 SVPSEVADQPMSD-EETKQGALNRVRNAKQRHPGAEYYVGLEAGIE 91 (185)
T ss_dssp CCCCSSCSSCCSH-HHHHHHHHHHHHHHHHHSTTCSEEEEEEEEEE
T ss_pred cCCCCcCCCCCCH-HHHHHHHHHHHHHHHhhCCCCCEEEEEcceec
Confidence 4668889998863 88999999999888875 3678899888776
No 24
>3f5o_A Thioesterase superfamily member 2; hotdog fold, hydrolase; HET: UOC COA P6G; 1.70A {Homo sapiens} SCOP: d.38.1.5 PDB: 2f0x_A* 2cy9_A
Probab=49.83 E-value=17 Score=25.77 Aligned_cols=43 Identities=16% Similarity=0.165 Sum_probs=27.9
Q ss_pred HHHHHHHHHH--HHHHhhccccCcCCcccEEEEEecCCeEEEEEeecCCCch
Q 030939 84 DNVRQVIADA--RGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKR 133 (169)
Q Consensus 84 E~Ve~VLeei--RP~L~~Df~~~vGiGGDVELVdvdgg~VkVrL~GaC~~Cp 133 (169)
++++++++.+ ++-+.+. -|++++++++++.+.+++.-.=++|-
T Consensus 6 ~~~~~~~~~~~~~~pf~~~-------lg~~~~~~~~~g~~~~~~~~~~~~~n 50 (148)
T 3f5o_A 6 QSLREVIKAMTKARNFERV-------LGKITLVSAAPGKVICEMKVEEEHTN 50 (148)
T ss_dssp HHHHHHHHHHTTSSSGGGG-------GTTCEEEEEETTEEEEEEECCGGGBC
T ss_pred HHHHHHHHhhhCCcCHHHH-------hCCeEEEEecCCEEEEEEEcCHHHcC
Confidence 5566665543 2233333 46799999999999888876555554
No 25
>2fhm_A Probable acylphosphatase; hydrolase; NMR {Bacillus subtilis} PDB: 2hlt_A 2hlu_A 3br8_A
Probab=49.68 E-value=33 Score=23.76 Aligned_cols=58 Identities=16% Similarity=0.081 Sum_probs=36.1
Q ss_pred HHHHhhccccCcCCcccEEEEEecCCeEEEEEeecCCCchhhHHHHHHHHHHHhCCCceEEEecCCc
Q 030939 94 RGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIPEILEVDIEDEK 160 (169)
Q Consensus 94 RP~L~~Df~~~vGiGGDVELVdvdgg~VkVrL~GaC~~Cp~Tlk~gIE~~Lke~IPEI~~V~i~d~~ 160 (169)
||+.... -...|+.|-|. ...||.|.+.++|. +..+. ...++|++.-|. ..|+-.+.+
T Consensus 18 R~~v~~~-A~~lgl~G~V~--N~~dG~Vei~~eG~----~~~i~-~f~~~l~~~~p~-a~V~~v~~~ 75 (91)
T 2fhm_A 18 RYFVQME-ADKRKLAGWVK--NRDDGRVEILAEGP----ENALQ-SFVEAVKNGSPF-SKVTDISVT 75 (91)
T ss_dssp HHHHHHH-HHHTTCEEEEE--ECTTSCEEEEEEEC----HHHHH-HHHHHHHTTCSS-SEEEEEEEE
T ss_pred HHHHHHH-HHHcCCeEEEE--ECCCCcEEEEEEeC----HHHHH-HHHHHHHhCCCc-cEEEEEEEE
Confidence 5555443 23468888744 45688999999998 33344 455777777665 555443333
No 26
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=47.59 E-value=34 Score=20.40 Aligned_cols=33 Identities=9% Similarity=0.129 Sum_probs=22.2
Q ss_pred eEEEEEeec-CCCchhhHHHHHHHHHHHhCCCceEEEec
Q 030939 120 FVKIRLRGR-FWHKRSTVIARLANYLKQRIPEILEVDIE 157 (169)
Q Consensus 120 ~VkVrL~Ga-C~~Cp~Tlk~gIE~~Lke~IPEI~~V~i~ 157 (169)
.+.+++.|- |.+|... |++.|+ ++|+|..|.+.
T Consensus 4 ~~~~~v~gm~C~~C~~~----ie~~l~-~~~gV~~~~v~ 37 (73)
T 1mwy_A 4 RYSWKVSGMDCAACARK----VENAVR-QLAGVNQVQVL 37 (73)
T ss_dssp EEEEEEESCCSTTHHHH----HHHHHH-TSSSEEEEEEE
T ss_pred EEEEEECCcCCHHHHHH----HHHHHh-cCCCeeEEEEE
Confidence 355677775 8888755 556654 48998777653
No 27
>2bjd_A Acylphosphatase; hyperthermophIle, hydrolase; 1.27A {Sulfolobus solfataricus} PDB: 2bje_A 1y9o_A
Probab=46.95 E-value=22 Score=25.44 Aligned_cols=58 Identities=26% Similarity=0.312 Sum_probs=36.0
Q ss_pred HHHHhhccccCcCCcccEEEEEecCCeEEEEEeecCCCchhhHHHHHHHHHHHhCCCceEEEecCCc
Q 030939 94 RGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIPEILEVDIEDEK 160 (169)
Q Consensus 94 RP~L~~Df~~~vGiGGDVELVdvdgg~VkVrL~GaC~~Cp~Tlk~gIE~~Lke~IPEI~~V~i~d~~ 160 (169)
||+..+. -...|+.|-|. ...+|.|.+.++|. +..+. ...++|++. |....|+-.+.+
T Consensus 30 R~~v~~~-A~~lgL~G~V~--N~~dG~Vei~~eG~----~~~i~-~f~~~l~~g-P~~A~V~~v~~~ 87 (101)
T 2bjd_A 30 RKFVQIH-AIRLGIKGYAK--NLPDGSVEVVAEGY----EEALS-KLLERIKQG-PPAAEVEKVDYS 87 (101)
T ss_dssp HHHHHHH-HHHTTCEEEEE--ECTTSCEEEEEEEE----HHHHH-HHHHHHTTC-STTCEEEEEEEE
T ss_pred HHHHHHH-HHHcCCeEEEE--ECCCCcEEEEEEeC----HHHHH-HHHHHHHhC-CCccEEEEEEEE
Confidence 5655544 23468888743 45688999999998 33344 444677766 765555544333
No 28
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=46.20 E-value=31 Score=20.26 Aligned_cols=34 Identities=15% Similarity=0.191 Sum_probs=23.1
Q ss_pred CeEEEEEee-cCCCchhhHHHHHHHHHHHhCCCceEEEec
Q 030939 119 PFVKIRLRG-RFWHKRSTVIARLANYLKQRIPEILEVDIE 157 (169)
Q Consensus 119 g~VkVrL~G-aC~~Cp~Tlk~gIE~~Lke~IPEI~~V~i~ 157 (169)
+.+.+++.| .|.+|... |++.|+ ++|+|..|.+.
T Consensus 4 ~~~~~~v~gm~C~~c~~~----i~~~l~-~~~gv~~~~v~ 38 (75)
T 1yjr_A 4 GVLELVVRGMTCASCVHK----IESSLT-KHRGILYCSVA 38 (75)
T ss_dssp CCEEEEEETCCTTTHHHH----HHHHHT-TSTTEEEEEEE
T ss_pred eEEEEEECCcccHHHHHH----HHHHHH-cCCCEEEEEEE
Confidence 456778888 48898755 445554 47888777653
No 29
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=46.14 E-value=16 Score=22.51 Aligned_cols=32 Identities=13% Similarity=0.113 Sum_probs=21.1
Q ss_pred eEEEEEee-cCCCchhhHHHHHHHHHHHhCCCceEEEecC
Q 030939 120 FVKIRLRG-RFWHKRSTVIARLANYLKQRIPEILEVDIED 158 (169)
Q Consensus 120 ~VkVrL~G-aC~~Cp~Tlk~gIE~~Lke~IPEI~~V~i~d 158 (169)
...+++ | .|.+|..++ ++.|++ +|+| .|.+.-
T Consensus 3 ~~~~~v-gm~C~~C~~~i----~~~l~~-~~gV-~v~v~~ 35 (68)
T 3iwl_A 3 KHEFSV-DMTCGGCAEAV----SRVLNK-LGGV-KYDIDL 35 (68)
T ss_dssp EEEEEE-CCCSHHHHHHH----HHHHHH-HCSE-EEEEET
T ss_pred eEEEEE-CcCcHHHHHHH----HHHHHc-CCCe-EEEEEc
Confidence 356677 6 788887654 455554 6888 776643
No 30
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=45.26 E-value=48 Score=20.66 Aligned_cols=33 Identities=12% Similarity=0.357 Sum_probs=23.0
Q ss_pred eEEEEEee-cCCCchhhHHHHHHHHHHHhCCCceEEEec
Q 030939 120 FVKIRLRG-RFWHKRSTVIARLANYLKQRIPEILEVDIE 157 (169)
Q Consensus 120 ~VkVrL~G-aC~~Cp~Tlk~gIE~~Lke~IPEI~~V~i~ 157 (169)
.+.+++.| .|.+|...+ ++.|+ ++|+|..|.+.
T Consensus 10 ~~~~~v~gm~C~~C~~~i----e~~l~-~~~GV~~~~v~ 43 (84)
T 1q8l_A 10 VLKMKVEGMTCHSCTSTI----EGKIG-KLQGVQRIKVS 43 (84)
T ss_dssp EEEEEECCTTTCSSCHHH----HHHHH-TCTTEEEEEEC
T ss_pred EEEEEECCcccHHHHHHH----HHHHH-cCCCeEEEEEE
Confidence 46677888 599998664 45554 47888877653
No 31
>3r07_C Putative lipoate-protein ligase A subunit 2; adenylate-forming enzyme, BI-partite, ATP-binding, transferase; 2.70A {Thermoplasma acidophilum dsm 1728}
Probab=44.92 E-value=40 Score=23.57 Aligned_cols=39 Identities=28% Similarity=0.508 Sum_probs=26.4
Q ss_pred cccEEE-EEecCCe-EEEEEeecCCCchhhHHHHHHHHHHH
Q 030939 108 TGVAEL-AELDGPF-VKIRLRGRFWHKRSTVIARLANYLKQ 146 (169)
Q Consensus 108 GGDVEL-Vdvdgg~-VkVrL~GaC~~Cp~Tlk~gIE~~Lke 146 (169)
||-|++ +++++|. -.+++.|-+-..|.-....||++|+-
T Consensus 16 ~G~v~v~l~v~~G~I~~vki~GDFf~~p~~~i~~le~~L~G 56 (91)
T 3r07_C 16 KGLIRVTLDLDGNRIKDIHISGDFFMFPEDSINRLEDMLRG 56 (91)
T ss_dssp SCEEEEEEEEETTEEEEEEEEEEBCCBSTTHHHHHHHHHTT
T ss_pred CcEEEEEEEEcCCEEEEEEEEcccCCCcchhHHHHHHHHCC
Confidence 566665 6777775 55999999998774334456666654
No 32
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=43.16 E-value=14 Score=24.11 Aligned_cols=33 Identities=9% Similarity=0.102 Sum_probs=22.3
Q ss_pred CeEEEEEee-cCCCchhhHHHHHHHHHHHhCCCceEEEe
Q 030939 119 PFVKIRLRG-RFWHKRSTVIARLANYLKQRIPEILEVDI 156 (169)
Q Consensus 119 g~VkVrL~G-aC~~Cp~Tlk~gIE~~Lke~IPEI~~V~i 156 (169)
..+.+++.| .|.+|... |++.| .++|+|..|.+
T Consensus 3 ~~~~l~v~Gm~C~~C~~~----Ie~~L-~~~~GV~~v~v 36 (90)
T 2g9o_A 3 STATFIIDGMHCKSCVSN----IESTL-SALQYVSSIVV 36 (90)
T ss_dssp EEEEEEEESCCHHHHHHH----HHHHH-TTCTTEEEEEE
T ss_pred cEEEEEECCcCCHHHHHH----HHHHH-HcCCCeeEEEE
Confidence 456777887 57777654 55666 44899877665
No 33
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=42.88 E-value=28 Score=23.61 Aligned_cols=32 Identities=16% Similarity=0.191 Sum_probs=21.6
Q ss_pred eEEEEEee-cCCCchhhHHHHHHHHHHHhCCCceEEEe
Q 030939 120 FVKIRLRG-RFWHKRSTVIARLANYLKQRIPEILEVDI 156 (169)
Q Consensus 120 ~VkVrL~G-aC~~Cp~Tlk~gIE~~Lke~IPEI~~V~i 156 (169)
.+.+++.| .|.+|... |++.|++ +|+|..+.+
T Consensus 5 ~~~~~v~gm~C~~C~~~----ie~~l~~-~~gv~~~~v 37 (149)
T 2ew9_A 5 KCFLQIKGMTCASCVSN----IERNLQK-EAGVLSVLV 37 (149)
T ss_dssp EEEEEEECCCSSSHHHH----HHHHHHT-TSSCCCEEE
T ss_pred EEEEEECCeecHHHHHH----HHHHHhc-CCCcEEEEE
Confidence 35677777 78888755 5566665 888866554
No 34
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=41.53 E-value=32 Score=26.86 Aligned_cols=41 Identities=7% Similarity=0.214 Sum_probs=31.9
Q ss_pred ccHHHHHHHHHHHHHHHhhccccCcCCcccEEEEEecCCeEEEEEeecC
Q 030939 81 LTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRF 129 (169)
Q Consensus 81 LteE~Ve~VLeeiRP~L~~Df~~~vGiGGDVELVdvdgg~VkVrL~GaC 129 (169)
+..+.|+++|++++-.++.. +..+|++++.|+ .+++.+-.+
T Consensus 36 ~~~~~v~~~l~~L~~~y~~~-------~rg~~l~~v~~g-y~l~t~~~~ 76 (162)
T 1t6s_A 36 FTPSELQEAVDELNRDYEAT-------GRTFRIHAIAGG-YRFLTEPEF 76 (162)
T ss_dssp CCHHHHHHHHHHHHHHHHHH-------TCSEEEEEETTE-EEEEECGGG
T ss_pred CCHHHHHHHHHHHHHHhhhC-------CCCEEEEEECCE-EEEEEcHHH
Confidence 56889999999998888877 778999999755 455555443
No 35
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=40.95 E-value=23 Score=24.48 Aligned_cols=21 Identities=10% Similarity=0.156 Sum_probs=19.6
Q ss_pred cccHHHHHHHHHHHHHHHhhc
Q 030939 80 DLTEDNVRQVIADARGELAQL 100 (169)
Q Consensus 80 ~LteE~Ve~VLeeiRP~L~~D 100 (169)
+|++|++++++++++-.|.+.
T Consensus 55 ~l~ee~~~~~vek~~~~i~~~ 75 (77)
T 3zzp_A 55 NLDQSQLQNEKEIIQRALENY 75 (77)
T ss_dssp TCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhc
Confidence 678999999999999999988
No 36
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=40.25 E-value=1e+02 Score=25.36 Aligned_cols=73 Identities=22% Similarity=0.244 Sum_probs=48.8
Q ss_pred ccHHHHHHHH---HHHHHHHhhccc------------cCcCCcccEEEEEecCCeEEEE-------EeecCCCchhhHHH
Q 030939 81 LTEDNVRQVI---ADARGELAQLFD------------TSVGITGVAELAELDGPFVKIR-------LRGRFWHKRSTVIA 138 (169)
Q Consensus 81 LteE~Ve~VL---eeiRP~L~~Df~------------~~vGiGGDVELVdvdgg~VkVr-------L~GaC~~Cp~Tlk~ 138 (169)
.|.++++.+- +.++-+|.+.++ .+||.-||-..-+. .|.+| +++....=|..+..
T Consensus 201 ~t~~~l~~~r~~~~~l~~~~~~~~~~~~~~~~~l~~v~~~~~~gd~r~y~~---~~~~r~~~~~d~mt~~~~~~~~~~~~ 277 (308)
T 2dpl_A 201 VTPEKIRIVREANAIVEEEVERAGLRPWQAFAVLLGVKTVGVQGDIRAYKE---TIAVRIVESIDGMTANAMNVPWEVLQ 277 (308)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEEECCCCEEEESSSSEEEEE---EEEEEEEECSSSSSBEECCCCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhccceeeEEecCceeeeecCCcccccc---eEEEEEEccCccccCCcccCCHHHHH
Confidence 4555543322 224666665542 66888888777763 45555 34555555567888
Q ss_pred HHHHHHHHhCCCceEEEe
Q 030939 139 RLANYLKQRIPEILEVDI 156 (169)
Q Consensus 139 gIE~~Lke~IPEI~~V~i 156 (169)
.|.+.|..++|+|..|.-
T Consensus 278 ~~~~~i~~~~~~~~~v~~ 295 (308)
T 2dpl_A 278 RIAFRITSEIPEVGRVLY 295 (308)
T ss_dssp HHHHHHHHHCTTEEEEEE
T ss_pred HHHHHHHhcCCCcceEEe
Confidence 999999999999999974
No 37
>1w2i_A Acylphosphatase; hydrolase, thermophilic, stability, amyloid; 1.5A {Pyrococcus horikoshii} SCOP: d.58.10.1 PDB: 1v3z_A 2w4d_A
Probab=40.07 E-value=31 Score=23.98 Aligned_cols=56 Identities=20% Similarity=0.277 Sum_probs=33.8
Q ss_pred HHHHhhccccCcCCcccEEEEEecCCeEEEEEeecCCCchhhHHHHHHHHHHHhCCCceEEEecC
Q 030939 94 RGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIPEILEVDIED 158 (169)
Q Consensus 94 RP~L~~Df~~~vGiGGDVELVdvdgg~VkVrL~GaC~~Cp~Tlk~gIE~~Lke~IPEI~~V~i~d 158 (169)
||+..+. -...|+.|-|. ...||.|.+.++|. +..+. ...++|+ +-|....|+-.+
T Consensus 20 R~~v~~~-A~~lgL~G~V~--N~~dG~Vei~~~G~----~~~v~-~f~~~l~-~gP~~a~V~~v~ 75 (91)
T 1w2i_A 20 RWSMQRE-ARKLGVNGWVR--NLPDGSVEAVLEGD----EERVE-ALIGWAH-QGPPLARVTRVE 75 (91)
T ss_dssp HHHHHHH-HHHHTCEEEEE--ECTTSCEEEEEEEE----HHHHH-HHHHHTT-TCSTTCEEEEEE
T ss_pred HHHHHHH-HHHcCCeEEEE--ECCCCCEEEEEEeC----HHHHH-HHHHHHH-hCCCCcEEEEEE
Confidence 5555443 22357888743 45788999999998 33333 3445666 567655555433
No 38
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=40.04 E-value=34 Score=19.58 Aligned_cols=31 Identities=16% Similarity=0.346 Sum_probs=20.1
Q ss_pred EEEEee-cCCCchhhHHHHHHHHHHHhCCCceEEEec
Q 030939 122 KIRLRG-RFWHKRSTVIARLANYLKQRIPEILEVDIE 157 (169)
Q Consensus 122 kVrL~G-aC~~Cp~Tlk~gIE~~Lke~IPEI~~V~i~ 157 (169)
.+++.| .|.+|... |++.|+ ++|+|..+.+.
T Consensus 3 ~~~v~gm~C~~C~~~----i~~~l~-~~~gv~~~~v~ 34 (68)
T 1cpz_A 3 EFSVKGMSCNHCVAR----IEEAVG-RISGVKKVKVQ 34 (68)
T ss_dssp EEEESCCCSSSHHHH----HHHHHH-TSTTEEEEEEE
T ss_pred EEEECCeeCHHHHHH----HHHHHH-cCCCeEEEEEE
Confidence 456666 48888765 445554 47888776653
No 39
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A
Probab=39.43 E-value=54 Score=19.02 Aligned_cols=32 Identities=16% Similarity=0.338 Sum_probs=21.5
Q ss_pred eEEEEEeec-CCCchhhHHHHHHHHHHHhCCCceEEEe
Q 030939 120 FVKIRLRGR-FWHKRSTVIARLANYLKQRIPEILEVDI 156 (169)
Q Consensus 120 ~VkVrL~Ga-C~~Cp~Tlk~gIE~~Lke~IPEI~~V~i 156 (169)
.+.+++.|- |.+|... |++.|. ++|+|..|.+
T Consensus 7 ~~~~~v~gm~C~~C~~~----i~~~l~-~~~gv~~~~v 39 (76)
T 1opz_A 7 EIAMQVSGMTCAACAAR----IEKGLK-RMPGVTDANV 39 (76)
T ss_dssp EEEEEEESCCSTTHHHH----HHHHHH-TSTTEEEEEE
T ss_pred EEEEEECCcccHHHHHH----HHHHHh-cCCCeEEEEE
Confidence 345677774 8888755 556665 4788877664
No 40
>3mgj_A Uncharacterized protein MJ1480; saccharop_DH_N domain, NESG, structural genomics, PSI-2, protein structure initiative; 2.70A {Methanocaldococcus jannaschii}
Probab=38.01 E-value=1.3e+02 Score=22.81 Aligned_cols=58 Identities=34% Similarity=0.502 Sum_probs=41.7
Q ss_pred cccEEEEEec-C------CeEEEEEeecCCCchhhHHHHHHHHHH---HhCCCceEEEecCCcccCCCCCCC
Q 030939 108 TGVAELAELD-G------PFVKIRLRGRFWHKRSTVIARLANYLK---QRIPEILEVDIEDEKQLDDSPENF 169 (169)
Q Consensus 108 GGDVELVdvd-g------g~VkVrL~GaC~~Cp~Tlk~gIE~~Lk---e~IPEI~~V~i~d~~ql~d~~~~~ 169 (169)
||+-++.+++ | ....+++.|. =+.+|..-+ ..|. ..+++..+|.++.-++--..|+||
T Consensus 29 GG~F~I~~f~vG~~k~d~SyA~l~V~a~---d~e~L~~Il-~~L~~lGA~~~~~~da~l~~a~~dgV~P~~F 96 (118)
T 3mgj_A 29 GGDYKVLEFEIGKRKTDPSYAKILVIGR---DERHVDEIL-NELRDLGAEIPEIEEVELQPAEKDMVLPEGF 96 (118)
T ss_dssp TCEEEEEEEECCSSTTSCEEEEEEEEES---SHHHHHHHH-HHHHHHHHHCTTEEEEEECCSSSCCBCCSCC
T ss_pred CCCEEEEEEecCCCCCCcceEEEEEecC---CHHHHHHHH-HHHHHcCCcCCCCCCceEEEccccCcCCCCe
Confidence 9999999985 2 2356666655 124555433 3333 348999999999999999999998
No 41
>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}
Probab=37.98 E-value=1.9e+02 Score=24.69 Aligned_cols=72 Identities=10% Similarity=0.089 Sum_probs=37.2
Q ss_pred hHHHHHHhhc-CccccCccccchhcccccccC---CCcceeeecc-ccchhhcccCCCCCCCccccHHHHHHHHHHH
Q 030939 22 CFLRKILSTC-NHSKAFNKQTTHCRQKKLSRR---KPILLSTSID-RGYLTRTAAGGVPPPPLDLTEDNVRQVIADA 93 (169)
Q Consensus 22 ~~l~~~~~~c-~~s~~f~~~~~~~~~~~~~~~---~p~~~~t~~~-r~~~~~~~~~~~~~~~l~LteE~Ve~VLeei 93 (169)
.-|+++...| ...+..--|+.|.+....+.. .+..-.|.+. ........+......+-+||+|+|++++++.
T Consensus 79 ~~~k~l~~avH~~G~~i~~QL~H~Gr~~~~~~~~g~~~vapS~i~~~~~~~~~~~~~~~~~pr~mt~~eI~~ii~~f 155 (362)
T 4ab4_A 79 RGWNNVTKAVHAAGGRIFLQLWHVGRISHPSYLNGELPVAPSAIQPKGHVSLVRPLSDYPTPRALETEEINDIVEAY 155 (362)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECCTTSCCGGGTTTCCCEESSCCCCSSBCSSCSSCCBCCCCEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCEEEEEeccCcccccccccCCCcccCCCCCCCCccccccccccCCCCCCcCCHHHHHHHHHHH
Confidence 4567777777 333334568889876544321 1111112111 0000111111123456689999999999975
No 42
>2gv1_A Probable acylphosphatase; globular alpha-helix/beta-sheet protein, hydrolase; NMR {Escherichia coli}
Probab=36.27 E-value=73 Score=22.03 Aligned_cols=48 Identities=27% Similarity=0.393 Sum_probs=31.1
Q ss_pred cCCcccEEEEEecCCeEEEEEeecCCCchhhHHHHHHHHH-HHhCCCceEEEecCCc
Q 030939 105 VGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYL-KQRIPEILEVDIEDEK 160 (169)
Q Consensus 105 vGiGGDVELVdvdgg~VkVrL~GaC~~Cp~Tlk~gIE~~L-ke~IPEI~~V~i~d~~ 160 (169)
.|+.|-|. ...||.|.+.++|. +..+. ...++| ++. |....|+-.+.+
T Consensus 30 lgL~G~V~--N~~dG~Vei~~eG~----~~~i~-~f~~~l~~~g-P~~a~V~~v~~~ 78 (92)
T 2gv1_A 30 LGLTGYAK--NLDDGSVEVVACGE----EGQVE-KLMQWLKSGG-PRSARVERVLSE 78 (92)
T ss_dssp HTCCCEEE--ECSSSCEEEEECSC----HHHHH-HHHHHHHHTS-STTSEEEEEEEE
T ss_pred cCCeEEEE--ECCCCcEEEEEEeC----HHHHH-HHHHHhhccC-CCceEEEEEEEE
Confidence 57888754 45688999999997 33444 444677 666 766665544333
No 43
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=36.21 E-value=38 Score=19.72 Aligned_cols=33 Identities=12% Similarity=0.280 Sum_probs=21.2
Q ss_pred eEEEEEeec-CCCchhhHHHHHHHHHHHhCCCceEEEec
Q 030939 120 FVKIRLRGR-FWHKRSTVIARLANYLKQRIPEILEVDIE 157 (169)
Q Consensus 120 ~VkVrL~Ga-C~~Cp~Tlk~gIE~~Lke~IPEI~~V~i~ 157 (169)
.+.+++.|- |.+|... |++.|+ ++|+|..|.+.
T Consensus 6 ~~~~~v~gm~C~~C~~~----i~~~l~-~~~gv~~~~v~ 39 (71)
T 2l3m_A 6 QLTLQVEGMSCGHCVNA----IESSVK-ELNGVEQVKVQ 39 (71)
T ss_dssp EEEEEEECCCSHHHHHH----HHHHHH-TSTTEEEEEEE
T ss_pred EEEEEECCccCHHHHHH----HHHHHH-cCCCeEEEEEE
Confidence 355677774 7777654 555554 48888777654
No 44
>2aj0_A Probable cadmium-transporting ATPase; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta, metal binding protein, hydrolase; NMR {Listeria monocytogenes} PDB: 2aj1_A
Probab=35.99 E-value=42 Score=19.92 Aligned_cols=32 Identities=16% Similarity=0.199 Sum_probs=21.1
Q ss_pred EEEEEeec-CCCchhhHHHHHHHHHHHhCCCceEEEec
Q 030939 121 VKIRLRGR-FWHKRSTVIARLANYLKQRIPEILEVDIE 157 (169)
Q Consensus 121 VkVrL~Ga-C~~Cp~Tlk~gIE~~Lke~IPEI~~V~i~ 157 (169)
+.+++.|- |.+|... |++.|++ +|+|..+.+.
T Consensus 5 ~~~~v~gm~C~~C~~~----ie~~l~~-~~gv~~~~v~ 37 (71)
T 2aj0_A 5 TVYRVDGLSCTNCAAK----FERNVKE-IEGVTEAIVN 37 (71)
T ss_dssp EEEEEESCCCHHHHHH----HHHHHHH-STTEEEEEEC
T ss_pred EEEEECCcccHHHHHH----HHHHHHc-CCCeEEEEEE
Confidence 45666765 8888755 4455543 8898877764
No 45
>3trg_A Acylphosphatase; fatty acid and phospholipid metabolism, hydrolase; 1.60A {Coxiella burnetii}
Probab=35.65 E-value=50 Score=23.38 Aligned_cols=56 Identities=20% Similarity=0.272 Sum_probs=35.3
Q ss_pred HHHHhhccccCcCCcccEEEEEecCCeEEEEEeecCCCchhhHHHHHHHHHHHhCCCceEEEecC
Q 030939 94 RGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIPEILEVDIED 158 (169)
Q Consensus 94 RP~L~~Df~~~vGiGGDVELVdvdgg~VkVrL~GaC~~Cp~Tlk~gIE~~Lke~IPEI~~V~i~d 158 (169)
||+.... -...|+.|-|. ...||.|.+.++|. +..+. ...++|++ -|....|+-.+
T Consensus 28 R~~v~~~-A~~lgL~G~Vr--N~~dG~Vei~~eG~----~~~l~-~f~~~l~~-gPp~A~V~~v~ 83 (98)
T 3trg_A 28 RESVRKK-AEELQLTGWVK--NLSHGDVELVACGE----RDSIM-ILTEWLWE-GPPQAAVSNVN 83 (98)
T ss_dssp HHHHHHH-HHHTTCEEEEE--ECTTSCEEEEEEEE----HHHHH-HHHHHTTT-CSTTCEEEEEE
T ss_pred cHHHHHH-HHHcCCeEEEE--ECCCCEEEEEEEEC----HHHHH-HHHHHHHh-CCCCcEEEEEE
Confidence 5555443 23468888864 56788999999998 44444 34466665 57655555433
No 46
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=35.46 E-value=3.9 Score=29.16 Aligned_cols=40 Identities=25% Similarity=0.219 Sum_probs=20.9
Q ss_pred HHhhccccC-cCCcccEEEEEecCCeEEEE------EeecCCCchhh
Q 030939 96 ELAQLFDTS-VGITGVAELAELDGPFVKIR------LRGRFWHKRST 135 (169)
Q Consensus 96 ~L~~Df~~~-vGiGGDVELVdvdgg~VkVr------L~GaC~~Cp~T 135 (169)
.|...|+.| .-|-.|++..+=.|-..+++ +.|.|.+||.+
T Consensus 21 eLA~~l~VS~~TIRrDL~~Le~~G~l~R~~~~~~~C~sgsC~sC~~~ 67 (87)
T 2k02_A 21 QLSARLQTPQPLIDAMLERMEAMGKVVRISETSEGCLSGSCKSCPEG 67 (87)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHTTCCSEEEEEECCSSCSSSSSSCSSC
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCc
Confidence 444444433 23334444333345556665 45789999843
No 47
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=35.45 E-value=19 Score=26.09 Aligned_cols=30 Identities=13% Similarity=0.060 Sum_probs=26.0
Q ss_pred cccHHHHHHHHHHHHHHHhhccccCcCCcccEEEEEe
Q 030939 80 DLTEDNVRQVIADARGELAQLFDTSVGITGVAELAEL 116 (169)
Q Consensus 80 ~LteE~Ve~VLeeiRP~L~~Df~~~vGiGGDVELVdv 116 (169)
++++|++++.++++.-.|.+. ||.|.-++-
T Consensus 55 ~l~ee~~~~~ve~~~~iI~~~-------gG~i~~ve~ 84 (96)
T 2kjw_A 55 NLDQSQLALEKEIIQRALENY-------GARVEKVEE 84 (96)
T ss_dssp SCCHHHHHHHHHHHHHHHHHH-------TCCCSCCEE
T ss_pred CCCHHHHHHHHHHHHHHHHhC-------CCEEEEEec
Confidence 678999999999999999999 998765543
No 48
>2pa8_D DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D 2y0s_D
Probab=35.39 E-value=78 Score=25.64 Aligned_cols=45 Identities=9% Similarity=0.070 Sum_probs=37.5
Q ss_pred cEEEEEecCCeEEEEEeecCCCchhhHHHHHHHHHHHhCCC--ceEEEecC
Q 030939 110 VAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIPE--ILEVDIED 158 (169)
Q Consensus 110 DVELVdvdgg~VkVrL~GaC~~Cp~Tlk~gIE~~Lke~IPE--I~~V~i~d 158 (169)
+|++++.++...++-|. |...|+-+.+.+.|-..+|. |..|.+.+
T Consensus 2 ~i~i~~~~~~~~~f~l~----g~~~t~~NalRRills~vp~~AI~~V~i~~ 48 (265)
T 2pa8_D 2 SINLLHKDDTRIDLVFE----GYPLEFVNAIRRASMLYVPIMAVDDVYFIE 48 (265)
T ss_dssp CEEEEEECSSEEEEEEE----SSCHHHHHHHHHHHHHSCCEEEEEEEEEEE
T ss_pred eEEEEEcCCCEEEEEEe----CCCHHHHHHHHHHHHHcCccceEEEEEEEe
Confidence 47888888888888888 55799999999999999998 56677654
No 49
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=35.36 E-value=49 Score=23.35 Aligned_cols=69 Identities=13% Similarity=0.145 Sum_probs=46.0
Q ss_pred cccHHHHHHHHHHHHHHHhhccccCcCCcccEEEEE----------e----cCCeEEEEEeecCCCchhhHHHHHHHHHH
Q 030939 80 DLTEDNVRQVIADARGELAQLFDTSVGITGVAELAE----------L----DGPFVKIRLRGRFWHKRSTVIARLANYLK 145 (169)
Q Consensus 80 ~LteE~Ve~VLeeiRP~L~~Df~~~vGiGGDVELVd----------v----dgg~VkVrL~GaC~~Cp~Tlk~gIE~~Lk 145 (169)
++++|+++++++++.-.|... ||.|.=++ | +|..+.+.+.+. .+.-.-+++.++
T Consensus 13 ~l~~e~~~~~~~~~~~~i~~~-------gg~i~~~e~wG~R~LAY~I~k~~~G~Y~l~~f~a~-----~~~i~eler~lr 80 (101)
T 1cqm_A 13 NLDQSQLALEKEIIQRALENY-------GARVEKVAILGLRRLAYPIAKDPQGYFLWYQVEMP-----EDRVNDLARELR 80 (101)
T ss_dssp TCCHHHHHHHHHHHHHHHHHT-------TCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEC-----HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHC-------CCEEEEEEeecCcccccCcCCCCEEEEEEEEEEeC-----hHHHHHHHHHhc
Confidence 578999999999999999999 99887554 2 234466666554 344446777665
Q ss_pred HhCCCceEEEecCCcc
Q 030939 146 QRIPEILEVDIEDEKQ 161 (169)
Q Consensus 146 e~IPEI~~V~i~d~~q 161 (169)
- =+.|.+--++-.++
T Consensus 81 ~-~~~VlR~l~vk~~~ 95 (101)
T 1cqm_A 81 I-RDNVRRVMVVKSQE 95 (101)
T ss_dssp T-STTEEEEEEEECSS
T ss_pred C-CcceEEEEEEEecc
Confidence 4 35666554433333
No 50
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=35.19 E-value=62 Score=19.38 Aligned_cols=32 Identities=13% Similarity=0.198 Sum_probs=21.0
Q ss_pred eEEEEEee-cCCCchhhHHHHHHHHHHHhCCCceEEEe
Q 030939 120 FVKIRLRG-RFWHKRSTVIARLANYLKQRIPEILEVDI 156 (169)
Q Consensus 120 ~VkVrL~G-aC~~Cp~Tlk~gIE~~Lke~IPEI~~V~i 156 (169)
.+.+++.| .|.+|... |++.|+ ++|+|..|.+
T Consensus 9 ~~~~~v~gm~C~~C~~~----i~~~l~-~~~gv~~~~v 41 (79)
T 1kvi_A 9 SVTISVEGMTCNSCVWT----IEQQIG-KVNGVHHIKV 41 (79)
T ss_dssp EEEEEECCCCSTTTHHH----HHHHHH-HSSSCCCEEE
T ss_pred EEEEEECCccCHHHHHH----HHHHHh-cCCCeEEEEE
Confidence 45677777 49999765 445554 3788766554
No 51
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A
Probab=34.94 E-value=49 Score=18.46 Aligned_cols=32 Identities=9% Similarity=0.208 Sum_probs=20.7
Q ss_pred EEEEEeec-CCCchhhHHHHHHHHHHHhCCCceEEEec
Q 030939 121 VKIRLRGR-FWHKRSTVIARLANYLKQRIPEILEVDIE 157 (169)
Q Consensus 121 VkVrL~Ga-C~~Cp~Tlk~gIE~~Lke~IPEI~~V~i~ 157 (169)
..+++.|. |.+|... |++.|+ ++|+|..+.+.
T Consensus 4 ~~~~v~gm~C~~c~~~----i~~~l~-~~~gv~~~~v~ 36 (69)
T 2qif_A 4 KTLQVEGMSCQHCVKA----VETSVG-ELDGVSAVHVN 36 (69)
T ss_dssp EEEEEECCCSHHHHHH----HHHHHH-TSTTEEEEEEE
T ss_pred EEEEECCcccHHHHHH----HHHHHh-cCCCeeEEEEE
Confidence 34667764 7777654 556665 47888777653
No 52
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=34.57 E-value=1.2e+02 Score=21.42 Aligned_cols=48 Identities=15% Similarity=0.177 Sum_probs=30.7
Q ss_pred EEEEe--cCCeEEEEEeecCCCchhhHHHHHHHHHHHhCCCceEEEecCCcccCC
Q 030939 112 ELAEL--DGPFVKIRLRGRFWHKRSTVIARLANYLKQRIPEILEVDIEDEKQLDD 164 (169)
Q Consensus 112 ELVdv--dgg~VkVrL~GaC~~Cp~Tlk~gIE~~Lke~IPEI~~V~i~d~~ql~d 164 (169)
|+--. +.|.+.|.+.+... ..+...| ..| +.+|+|..+.++.-.+-++
T Consensus 33 Ei~~~~~~~GkiVV~iEa~~~---~~l~~~i-~~I-~~i~GVlst~lvy~~~e~~ 82 (95)
T 2jsx_A 33 EVAVSDAPSGQLIVVVEAEDS---ETLIQTI-ESV-RNVEGVLAVSLVYHQQEEQ 82 (95)
T ss_dssp EEEEEETTTTEEEEEEEESSH---HHHHHHH-HHH-TTSTTEEEEEESSCCCCCC
T ss_pred EEEEecCCCCCEEEEEEeCCH---HHHHHHH-HHH-hcCCCccEEeEEEEEeccc
Confidence 65433 45899999999843 2344444 333 4599999999866544333
No 53
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=34.22 E-value=57 Score=18.86 Aligned_cols=32 Identities=16% Similarity=0.274 Sum_probs=20.9
Q ss_pred EEEEEee-cCCCchhhHHHHHHHHHHHhCCCceEEEec
Q 030939 121 VKIRLRG-RFWHKRSTVIARLANYLKQRIPEILEVDIE 157 (169)
Q Consensus 121 VkVrL~G-aC~~Cp~Tlk~gIE~~Lke~IPEI~~V~i~ 157 (169)
+.+++.| .|.+|... |++.|+ ++|+|..|.+.
T Consensus 5 ~~~~v~gm~C~~C~~~----i~~~l~-~~~gv~~~~v~ 37 (72)
T 1osd_A 5 VTLSVPGMTCSACPIT----VKKAIS-KVEGVSKVDVT 37 (72)
T ss_dssp EEEECTTCCSTTHHHH----HHHHHH-TSTTEEEEEEE
T ss_pred EEEEECCeEcHHHHHH----HHHHHh-cCCCeEEEEEE
Confidence 4566666 48888755 445554 47888776653
No 54
>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0
Probab=33.81 E-value=1.5e+02 Score=25.32 Aligned_cols=78 Identities=15% Similarity=0.040 Sum_probs=39.9
Q ss_pred hHHHHHHhhc-CccccCccccchhcccccccC---CCcceeeecc-ccchhhcccCCCCCCCccccHHHHHHHHHHH-HH
Q 030939 22 CFLRKILSTC-NHSKAFNKQTTHCRQKKLSRR---KPILLSTSID-RGYLTRTAAGGVPPPPLDLTEDNVRQVIADA-RG 95 (169)
Q Consensus 22 ~~l~~~~~~c-~~s~~f~~~~~~~~~~~~~~~---~p~~~~t~~~-r~~~~~~~~~~~~~~~l~LteE~Ve~VLeei-RP 95 (169)
.-|+++...| ...+..--|+.|.+....+.. .+..-.|.+. ........+......+-+||+|+|++++++. +-
T Consensus 87 ~~~k~l~~avH~~G~~i~~QL~H~Gr~~~~~~~~g~~~vapS~i~~~~~~~~~~g~~~~~~pr~mt~~eI~~ii~~f~~A 166 (361)
T 3gka_A 87 DGWRLVTDAVHAAGGRIFLQLWHVGRVSDPVFLDGALPVAPSAIAPGGHVSLVRPQRPYVTPRALELDEIPGVVAAFRRG 166 (361)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECCTTSCCGGGTTTCCCEESSSCCCSSBCSSCSSCCBCCCCEECCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEeeccCCccccccccCCCCcccCCCCCCCCcccccccccCCCCCccCCHHHHHHHHHHHHHH
Confidence 4567787777 333344568899886554321 1222122111 0000000011123456789999999999975 44
Q ss_pred HHhh
Q 030939 96 ELAQ 99 (169)
Q Consensus 96 ~L~~ 99 (169)
+..+
T Consensus 167 A~~A 170 (361)
T 3gka_A 167 AENA 170 (361)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 55
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=32.47 E-value=55 Score=18.79 Aligned_cols=32 Identities=13% Similarity=0.367 Sum_probs=20.8
Q ss_pred EEEEEeec-CCCchhhHHHHHHHHHHHhCCCceEEEec
Q 030939 121 VKIRLRGR-FWHKRSTVIARLANYLKQRIPEILEVDIE 157 (169)
Q Consensus 121 VkVrL~Ga-C~~Cp~Tlk~gIE~~Lke~IPEI~~V~i~ 157 (169)
+.+++.|- |.+|... |++.|+ ++|+|..|.+.
T Consensus 5 ~~~~v~gm~C~~C~~~----i~~~l~-~~~gv~~~~v~ 37 (71)
T 2xmw_A 5 INLQLEGMRCAACASS----IERAIA-KVPGVQSCQVN 37 (71)
T ss_dssp EEEEEECCCSHHHHHH----HHHHHH-TSTTEEEEEEE
T ss_pred EEEEECCcccHHHHHH----HHHHHh-cCCCeEEEEEE
Confidence 45667764 7777654 556654 47888777654
No 56
>2j5a_A 30S ribosomal protein S6; ribonucleoprotein, RIBO protein S6, RNA-binding, rRNA-binding, protein folding; 2.3A {Aquifex aeolicus} SCOP: d.58.14.1
Probab=31.91 E-value=57 Score=23.44 Aligned_cols=75 Identities=12% Similarity=0.119 Sum_probs=52.4
Q ss_pred cccHHHHHHHHHHHHHHHhhccccCcCCcccEEEEEe--------------cCCeEEEEEee-cCCCchhhHHHHHHHHH
Q 030939 80 DLTEDNVRQVIADARGELAQLFDTSVGITGVAELAEL--------------DGPFVKIRLRG-RFWHKRSTVIARLANYL 144 (169)
Q Consensus 80 ~LteE~Ve~VLeeiRP~L~~Df~~~vGiGGDVELVdv--------------dgg~VkVrL~G-aC~~Cp~Tlk~gIE~~L 144 (169)
++++|+++++++.+.-.|... ||.|.=++- +|..+.+.+.+ . |.+ -.-+++.+
T Consensus 19 ~l~~e~~~~~v~~~~~~i~~~-------Gg~i~~~e~wG~R~LAY~I~K~~~G~Y~l~~f~a~~----~~~-i~eler~l 86 (110)
T 2j5a_A 19 TLSEEEMKKKFEQVKEFIKQK-------GGEILYEEDWGMRQLAYPIQKFNNARYFLVQFKTEN----PQL-PNELDFQL 86 (110)
T ss_dssp TSCHHHHHHHHHHHHHHHHHT-------TEEEEEEEEEEEEECSSCSSSCSEEEEEEEEEEESC----TTH-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHC-------CCEEEEEEeecCcccccCcCCCCEEEEEEEEEEeCC----HHH-HHHHHHHh
Confidence 578999999999999999999 998876652 23447777766 4 333 34677766
Q ss_pred HHhCCCceEEEecCCcccCCCCC
Q 030939 145 KQRIPEILEVDIEDEKQLDDSPE 167 (169)
Q Consensus 145 ke~IPEI~~V~i~d~~ql~d~~~ 167 (169)
+- =+.|..--++-.++.+..|+
T Consensus 87 r~-~e~VlR~livk~~~~~~~~~ 108 (110)
T 2j5a_A 87 KI-DEDVIRWLNIQIKESEVKKN 108 (110)
T ss_dssp HH-CTTEEEEEEEEECGGGCCCC
T ss_pred CC-CcCeEEEEEEEccccccccc
Confidence 54 46677666655556666654
No 57
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=31.73 E-value=1.5e+02 Score=21.95 Aligned_cols=47 Identities=4% Similarity=-0.068 Sum_probs=35.8
Q ss_pred CccccHHHHHHHHHHHHHHHhhccccCcCCcccEEEE-EecCCeEEEEEeecCCC
Q 030939 78 PLDLTEDNVRQVIADARGELAQLFDTSVGITGVAELA-ELDGPFVKIRLRGRFWH 131 (169)
Q Consensus 78 ~l~LteE~Ve~VLeeiRP~L~~Df~~~vGiGGDVELV-dvdgg~VkVrL~GaC~~ 131 (169)
.-++++++++++++++.-+++.. +-+++|- +=+-+.++|++.-.=.+
T Consensus 32 ~~~~~~eel~~av~~lN~~~~~~-------n~~L~F~vdee~~~~vVkVvD~~Tg 79 (117)
T 2hc5_A 32 VHQVSYTNLAEMVGEMNKLLEPS-------QVHLKFELHDKLNEYYVKVIEDSTN 79 (117)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTTS-------SCCEEEEEEEETTEEEEEEEETTTT
T ss_pred cccCCHHHHHHHHHHHHHHHHhc-------CCceEEEEecCCCcEEEEEEECCCC
Confidence 33578999999999999999988 7788884 33457888887766444
No 58
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP}
Probab=30.81 E-value=63 Score=18.27 Aligned_cols=31 Identities=16% Similarity=0.283 Sum_probs=20.6
Q ss_pred EEEEEeec-CCCchhhHHHHHHHHHHHhCCCceEEEe
Q 030939 121 VKIRLRGR-FWHKRSTVIARLANYLKQRIPEILEVDI 156 (169)
Q Consensus 121 VkVrL~Ga-C~~Cp~Tlk~gIE~~Lke~IPEI~~V~i 156 (169)
+.+++.|. |.+|... |++.|+ ++|++..+.+
T Consensus 5 ~~~~v~gm~C~~C~~~----i~~~l~-~~~gv~~~~v 36 (71)
T 2ldi_A 5 QQMQVGGMRCAACASS----IERALE-RLKGVAEASV 36 (71)
T ss_dssp EEEEEETCTTSGGGHH----HHTGGG-GCSSEEEEEE
T ss_pred EEEEECCccCHHHHHH----HHHHHh-cCCCeeEEEE
Confidence 34666764 8899755 555554 5888877664
No 59
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=30.15 E-value=55 Score=22.17 Aligned_cols=33 Identities=12% Similarity=0.244 Sum_probs=22.2
Q ss_pred eEEEEEee-cCCCchhhHHHHHHHHHHHhCCCceEEEec
Q 030939 120 FVKIRLRG-RFWHKRSTVIARLANYLKQRIPEILEVDIE 157 (169)
Q Consensus 120 ~VkVrL~G-aC~~Cp~Tlk~gIE~~Lke~IPEI~~V~i~ 157 (169)
.+.+++.| .|.+|... |++.|+ ++|+|..|.+.
T Consensus 9 ~~~l~v~Gm~C~~Ca~~----Ie~~L~-~~~GV~~v~v~ 42 (111)
T 2ofg_X 9 TQQMQVGGMDCTSCKLK----IEGSLE-RLKGVAEASVT 42 (111)
T ss_dssp EEEEEESCCCGGGTHHH----HHHHHT-TSSSEEEEEEE
T ss_pred EEEEEECCcCCHHHHHH----HHHHHH-cCCCeeEEEEE
Confidence 35677777 68888755 555554 48888777653
No 60
>2i2q_A Cofilin; N-terminal serine, actin-binding protein; HET: LDA; 1.72A {Schizosaccharomyces pombe}
Probab=29.29 E-value=1.5e+02 Score=21.03 Aligned_cols=45 Identities=11% Similarity=0.112 Sum_probs=26.8
Q ss_pred CeEEEEEeecCCCchh---hHHHHHHHHHHHhCCCc-eEEEecCCcccCCC
Q 030939 119 PFVKIRLRGRFWHKRS---TVIARLANYLKQRIPEI-LEVDIEDEKQLDDS 165 (169)
Q Consensus 119 g~VkVrL~GaC~~Cp~---Tlk~gIE~~Lke~IPEI-~~V~i~d~~ql~d~ 165 (169)
..|.|-..+. +||. .+-+.=...|++.+.++ +++++.|+.+|+.+
T Consensus 80 k~vfI~w~Pd--~a~vk~KMlyassk~~l~~~l~g~~~~i~a~d~~el~~~ 128 (137)
T 2i2q_A 80 KIIFISWSPD--VAPIKSKMVYSSSKDTLRRAFTGIGTDIQATDFSEVAYE 128 (137)
T ss_dssp EEEEEEECCT--TSCHHHHHHHHHHHHHHHTTCCCCCEEEEECCCC-----
T ss_pred CEEEEEECCC--CCChhHhhhhHHHHHHHHHHhcCceEEEEECChHHcCHH
Confidence 4566666665 6672 23333457788888777 67889999998654
No 61
>1gxu_A Hydrogenase maturation protein HYPF; phosphatase, acylphosphatases, hydrogenase maturations, fibril formation, zinc-finger, complete proteome; 1.27A {Escherichia coli} SCOP: d.58.10.1 PDB: 1gxt_A
Probab=29.15 E-value=54 Score=22.86 Aligned_cols=52 Identities=23% Similarity=0.216 Sum_probs=33.0
Q ss_pred HHHHhhccccCcCCcccEEEEEecCCeEEEEEeecCCCchhhHHHHHHHHHHHhCCCceEEEec
Q 030939 94 RGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIPEILEVDIE 157 (169)
Q Consensus 94 RP~L~~Df~~~vGiGGDVELVdvdgg~VkVrL~GaC~~Cp~Tlk~gIE~~Lke~IPEI~~V~i~ 157 (169)
||+.... -...|+.|-|. ...|| |.|.++|.= ....++|++.-|....|+-.
T Consensus 23 R~~v~~~-A~~lgL~G~Vr--N~~dG-Vei~~eG~~--------~~f~~~l~~~~P~~A~V~~v 74 (91)
T 1gxu_A 23 RPFVWQL-AQQLNLHGDVC--NDGDG-VEVRLREDP--------EVFLVQLYQHCPPLARIDSV 74 (91)
T ss_dssp HHHHHHH-HHHHTCCEEEE--ECSSS-EEEEESSCC--------HHHHHHHHHTCCTTCEEEEE
T ss_pred HHHHHHH-HHHcCCeEEEE--ECCCc-EEEEEEECH--------HHHHHHHhhCCCCCEEEEEE
Confidence 5555443 23357888743 45678 999999872 45567888777765555433
No 62
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=28.41 E-value=61 Score=26.63 Aligned_cols=41 Identities=15% Similarity=0.076 Sum_probs=30.7
Q ss_pred cccHHHHHHHHHHHHHHHhhccccCcCCcccEEEEEecCCeEEEEEeec
Q 030939 80 DLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGR 128 (169)
Q Consensus 80 ~LteE~Ve~VLeeiRP~L~~Df~~~vGiGGDVELVdvdgg~VkVrL~Ga 128 (169)
++..+.|+++|++++-.+... +..++++++.|+ .+++.+-.
T Consensus 41 ~~~~~~v~~~l~~L~~~y~~~-------~rGiel~~v~~g-y~l~T~~e 81 (219)
T 2z99_A 41 EQPVYRVAAKLQLMADELTGR-------DSGIDLRHTSEG-WRMYTRAR 81 (219)
T ss_dssp TSCHHHHHHHHHHHHHHHHHT-------TCSEEEEEETTE-EEEEECGG
T ss_pred CcCHHHHHHHHHHHHHHHhhC-------CCCEEEEEECCE-EEEEEcHH
Confidence 356788999999987777777 778999999755 44545444
No 63
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=28.13 E-value=15 Score=29.73 Aligned_cols=26 Identities=8% Similarity=-0.090 Sum_probs=16.6
Q ss_pred eEEEEEeecCCCchhhHHHHHHHHHHH
Q 030939 120 FVKIRLRGRFWHKRSTVIARLANYLKQ 146 (169)
Q Consensus 120 ~VkVrL~GaC~~Cp~Tlk~gIE~~Lke 146 (169)
+|.| -.|+|+||.+++-...-+.|+.
T Consensus 193 vv~v-~~~~C~GC~~~lppq~~~~i~~ 218 (256)
T 3na7_A 193 IVTI-KKQACGGCFIRLNDKIYTEVLT 218 (256)
T ss_dssp EEEC-BTTBCTTTCCBCCHHHHHHHHH
T ss_pred EEEe-eCCccCCCCeeeCHHHHHHHHC
Confidence 3444 2579999996665555555554
No 64
>2qwz_A Phenylacetic acid degradation-related protein; putative thioesterase, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Probab=27.93 E-value=87 Score=22.83 Aligned_cols=43 Identities=19% Similarity=0.276 Sum_probs=27.2
Q ss_pred ccHHHHHHHHHHHHHHHhhccccCcCCcccEEEEEecCCeEEEEEeecCCCch
Q 030939 81 LTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKR 133 (169)
Q Consensus 81 LteE~Ve~VLeeiRP~L~~Df~~~vGiGGDVELVdvdgg~VkVrL~GaC~~Cp 133 (169)
++.+++++.|+.- |+... -++++++++++.+.+++.-.=..|-
T Consensus 24 ~~~~~~~~~l~~~-------~p~~~---lg~~v~~~~~g~~~~~~~v~~~~~n 66 (159)
T 2qwz_A 24 FDKDGLSAYLEEV-------FPQIQ---GEFSIDALAKGEITMRLNVQERHLR 66 (159)
T ss_dssp SCHHHHHHHHHHH-------CGGGT---TTEEEEEECSSEEEEEECGGGGCCC
T ss_pred CCHHHHHHHHHhh-------Ccccc---CCeEEEEecCCEEEEEEECCHHHcC
Confidence 4567777766543 33221 1478999988888888875544443
No 65
>3r3t_A 30S ribosomal protein S6; structural genomics, center for structural genomics of infec diseases, csgid, beta-barrel, cytosol; 2.30A {Bacillus anthracis}
Probab=27.68 E-value=46 Score=23.46 Aligned_cols=29 Identities=10% Similarity=0.121 Sum_probs=25.0
Q ss_pred cccHHHHHHHHHHHHHHHhhccccCcCCcccEEEEE
Q 030939 80 DLTEDNVRQVIADARGELAQLFDTSVGITGVAELAE 115 (169)
Q Consensus 80 ~LteE~Ve~VLeeiRP~L~~Df~~~vGiGGDVELVd 115 (169)
++++|+++++++++.-.|... ||.|.=++
T Consensus 16 ~~~~e~~~~~~~~~~~~i~~~-------gg~i~~~e 44 (99)
T 3r3t_A 16 GVEEEAQKALVERFAGVLTNN-------GAEIINTK 44 (99)
T ss_dssp TSCHHHHHHHHHHHHHHHHTT-------TCCCCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHC-------CCEEEEEE
Confidence 578999999999999999999 88876544
No 66
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=27.31 E-value=59 Score=19.19 Aligned_cols=32 Identities=13% Similarity=0.201 Sum_probs=20.1
Q ss_pred EEEEEeec-CCCchhhHHHHHHHHHHHhCCCceEEEec
Q 030939 121 VKIRLRGR-FWHKRSTVIARLANYLKQRIPEILEVDIE 157 (169)
Q Consensus 121 VkVrL~Ga-C~~Cp~Tlk~gIE~~Lke~IPEI~~V~i~ 157 (169)
+.+++.|. |.+|... |++.|++ +|+|..|.+.
T Consensus 4 ~~~~v~gm~C~~C~~~----i~~~l~~-~~gv~~~~v~ 36 (75)
T 3cjk_B 4 VTISVEGMTCNSCVWT----IEQQIGK-VNGVHHIKVS 36 (75)
T ss_dssp EEEEECCCCSHHHHHH----HHHHHHT-STTEEEEEEE
T ss_pred EEEEECCccCHHHHHH----HHHHHhc-CCCeEEEEEE
Confidence 45666664 7777644 5555554 7888776653
No 67
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=27.31 E-value=48 Score=18.76 Aligned_cols=31 Identities=10% Similarity=0.236 Sum_probs=19.4
Q ss_pred EEEEee-cCCCchhhHHHHHHHHHHHhCCCceEEEec
Q 030939 122 KIRLRG-RFWHKRSTVIARLANYLKQRIPEILEVDIE 157 (169)
Q Consensus 122 kVrL~G-aC~~Cp~Tlk~gIE~~Lke~IPEI~~V~i~ 157 (169)
.+++.| .|.+|... |++.|+ ++|++..+.+.
T Consensus 4 ~~~v~gm~C~~C~~~----i~~~l~-~~~gv~~~~v~ 35 (66)
T 1yg0_A 4 TFQVPSITCNHCVDK----IEKFVG-EIEGVSFIDVS 35 (66)
T ss_dssp EECCTTCSCSHHHHH----HHHHHT-TSSSEEEEEEE
T ss_pred EEEECCcccHHHHHH----HHHHHh-cCCCceEEEEE
Confidence 445555 48888755 445554 47888777653
No 68
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=27.21 E-value=66 Score=19.24 Aligned_cols=31 Identities=16% Similarity=0.207 Sum_probs=20.6
Q ss_pred EEEEEee-cCCCchhhHHHHHHHHHHHhCCCceEEEe
Q 030939 121 VKIRLRG-RFWHKRSTVIARLANYLKQRIPEILEVDI 156 (169)
Q Consensus 121 VkVrL~G-aC~~Cp~Tlk~gIE~~Lke~IPEI~~V~i 156 (169)
+.+++.| .|.+|... |++.|+ ++|+|..|.+
T Consensus 5 ~~~~v~gm~C~~C~~~----ie~~l~-~~~gv~~~~v 36 (77)
T 1y3j_A 5 CYIQVTGMTCASCVAN----IERNLR-REEGIYSILV 36 (77)
T ss_dssp EEEEESCGGGCSHHHH----HHHHHT-TSSSEEECCC
T ss_pred EEEEECCeeCHHHHHH----HHHHHh-cCCCeEEEEE
Confidence 4567777 49999765 445554 4788876654
No 69
>4b89_A General negative regulator of transcription subun; 1.50A {Saccharomyces cerevisiae S288C} PDB: 4b8a_A 4b8c_B
Probab=27.19 E-value=30 Score=29.26 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=17.4
Q ss_pred hhHHHHHHhhcCccccCccc
Q 030939 21 YCFLRKILSTCNHSKAFNKQ 40 (169)
Q Consensus 21 ~~~l~~~~~~c~~s~~f~~~ 40 (169)
-||..+||..|..|+-|.|.
T Consensus 171 IPFVcKvLe~~k~SkiFkPP 190 (249)
T 4b89_A 171 VPFVTKILQRASESKIFKPP 190 (249)
T ss_dssp HHHHHHHHGGGTTCSSSSTT
T ss_pred eeHHHHHHHhcccCCccCCC
Confidence 37899999999999999664
No 70
>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A
Probab=27.09 E-value=49 Score=19.66 Aligned_cols=31 Identities=10% Similarity=0.212 Sum_probs=19.8
Q ss_pred EEEEEeec-CCCchhhHHHHHHHHHHHhCCCceEEEe
Q 030939 121 VKIRLRGR-FWHKRSTVIARLANYLKQRIPEILEVDI 156 (169)
Q Consensus 121 VkVrL~Ga-C~~Cp~Tlk~gIE~~Lke~IPEI~~V~i 156 (169)
+.+++.|- |.+|... |++.|+ ++|+|..+.+
T Consensus 5 ~~~~v~gm~C~~C~~~----i~~~l~-~~~gv~~~~v 36 (80)
T 1jww_A 5 AEFDIEGMTCAACANR----IEKRLN-KIEGVANAPV 36 (80)
T ss_dssp EEEEEESCCCHHHHHH----HHHHHH-TSTTEEECCC
T ss_pred EEEEECCccCHHHHHH----HHHHHh-cCCCeEEEEE
Confidence 45667774 7777654 556665 4788766654
No 71
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=26.90 E-value=62 Score=18.69 Aligned_cols=32 Identities=19% Similarity=0.302 Sum_probs=20.2
Q ss_pred EEEEEee-cCCCchhhHHHHHHHHHHHhCCCceEEEec
Q 030939 121 VKIRLRG-RFWHKRSTVIARLANYLKQRIPEILEVDIE 157 (169)
Q Consensus 121 VkVrL~G-aC~~Cp~Tlk~gIE~~Lke~IPEI~~V~i~ 157 (169)
+.+++.| .|.+|... |++.|++ +|+|..+.+.
T Consensus 4 ~~~~v~gm~C~~c~~~----i~~~l~~-~~gv~~~~v~ 36 (72)
T 1fvq_A 4 VILAVHGMTCSACTNT----INTQLRA-LKGVTKCDIS 36 (72)
T ss_dssp EEEEECSCCSHHHHHH----HHHHHHT-SSSEEEECCB
T ss_pred EEEEECCeecHHHHHH----HHHHHhc-CCCeEEEEEE
Confidence 4566666 47777644 5555544 7888777653
No 72
>1tr0_A Stable protein 1; plant protein; 1.80A {Populus tremula} SCOP: d.58.4.4 PDB: 1si9_A
Probab=26.69 E-value=1.4e+02 Score=20.43 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=24.2
Q ss_pred CeEEEEEeecCCCch-hhHHHHHHHHHHHhCCCceEEEecC
Q 030939 119 PFVKIRLRGRFWHKR-STVIARLANYLKQRIPEILEVDIED 158 (169)
Q Consensus 119 g~VkVrL~GaC~~Cp-~Tlk~gIE~~Lke~IPEI~~V~i~d 158 (169)
.+|..+|+..=..-- ..++.++ ..|+.+||+|+.+++.-
T Consensus 11 HiVlfklk~~~~~~~~~~~~~~l-~~L~~~ip~i~~~~~G~ 50 (108)
T 1tr0_A 11 HTLLTRFKDEITREQIDNYINDY-TNLLDLIPSMKSFNWGT 50 (108)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHH-HHHHHHCTTCCEEEEEE
T ss_pred EEEEEEECCCCCHHHHHHHHHHH-HHHhhcCCceEEEEEcc
Confidence 457777775421111 3344444 66788899999998743
No 73
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=26.46 E-value=74 Score=18.33 Aligned_cols=30 Identities=10% Similarity=0.263 Sum_probs=19.2
Q ss_pred EEEee-cCCCchhhHHHHHHHHHHHhCCCceEEEec
Q 030939 123 IRLRG-RFWHKRSTVIARLANYLKQRIPEILEVDIE 157 (169)
Q Consensus 123 VrL~G-aC~~Cp~Tlk~gIE~~Lke~IPEI~~V~i~ 157 (169)
+++.| .|.+|... |++.|++ +|+|..+.+.
T Consensus 4 ~~v~gm~C~~C~~~----i~~~l~~-~~gv~~~~v~ 34 (69)
T 2kt2_A 4 LKITGMTCDSCAAH----VKEALEK-VPGVQSALVS 34 (69)
T ss_dssp EEEESSCSTHHHHH----HHHHHHH-STTEEEEEEE
T ss_pred EEECCcccHHHHHH----HHHHHHc-CCCeeEEEEE
Confidence 45566 48888755 4455543 7888777653
No 74
>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB: 2rog_A
Probab=26.06 E-value=38 Score=19.80 Aligned_cols=30 Identities=20% Similarity=0.449 Sum_probs=19.1
Q ss_pred EEEeec-CCCchhhHHHHHHHHHHHhCCCceEEEec
Q 030939 123 IRLRGR-FWHKRSTVIARLANYLKQRIPEILEVDIE 157 (169)
Q Consensus 123 VrL~Ga-C~~Cp~Tlk~gIE~~Lke~IPEI~~V~i~ 157 (169)
+++.|. |.+|... |++.|+ ++|+|..|.+.
T Consensus 4 ~~v~gm~C~~C~~~----i~~~l~-~~~gv~~~~v~ 34 (66)
T 2roe_A 4 LKVEGMTCNHCVMA----VTKALK-KVPGVEKVEVS 34 (66)
T ss_dssp EEEECCCSHHHHHH----HHHHHH-TSTTCCCEEEC
T ss_pred EEECCeEcHHHHHH----HHHHHH-cCCCeEEEEEE
Confidence 455554 7777654 555554 47888777664
No 75
>2dir_A Thump domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.308.1.3
Probab=25.56 E-value=1.6e+02 Score=20.04 Aligned_cols=40 Identities=23% Similarity=0.211 Sum_probs=27.0
Q ss_pred CeEEEEEeecCCCch---hhHHHHHHHHHHHhCCCceEEEecCCc
Q 030939 119 PFVKIRLRGRFWHKR---STVIARLANYLKQRIPEILEVDIEDEK 160 (169)
Q Consensus 119 g~VkVrL~GaC~~Cp---~Tlk~gIE~~Lke~IPEI~~V~i~d~~ 160 (169)
.+-+|+.+-+-.+ + +.+...|..+|.+.+|+. .|.+.+|.
T Consensus 32 ~TF~V~~kR~~k~-~~~S~ei~~~vG~~i~~~~~~~-kVdL~nPd 74 (98)
T 2dir_A 32 GTFQIVYKSRNNS-HVNREEVIRELAGIVCTLNSEN-KVDLTNPQ 74 (98)
T ss_dssp CEEEEEEECSSCC-SSCHHHHHHHHHHHHHHHCTTC-EECSSSCS
T ss_pred ceEEEEEEeCCCC-CCCHHHHHHHHHHHHHhhCCCC-eeEcCCCC
Confidence 3666666655444 6 567788999999988863 56665553
No 76
>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A
Probab=25.42 E-value=78 Score=19.15 Aligned_cols=32 Identities=9% Similarity=0.172 Sum_probs=20.8
Q ss_pred EEEEEeecCCCchhhHHHHHHHHHHHhCC-CceEEEec
Q 030939 121 VKIRLRGRFWHKRSTVIARLANYLKQRIP-EILEVDIE 157 (169)
Q Consensus 121 VkVrL~GaC~~Cp~Tlk~gIE~~Lke~IP-EI~~V~i~ 157 (169)
+.+++.-.|.+|... |++.|++ +| +|..|.+.
T Consensus 7 ~~~~v~m~C~~C~~~----ie~~l~~-~~~GV~~~~v~ 39 (73)
T 1cc8_A 7 YQFNVVMTCSGCSGA----VNKVLTK-LEPDVSKIDIS 39 (73)
T ss_dssp EEEEECCCSHHHHHH----HHHHHHT-TTTSEEEEEEE
T ss_pred EEEEEeeECHHHHHH----HHHHHHh-CCCCceEEEEE
Confidence 344555778888654 5566654 67 99887764
No 77
>3q2b_A Pfadf1, cofilin/actin-depolymerizing factor homolog 1; actin regulator, actin-binding protein; HET: TAR; 1.60A {Plasmodium falciparum} PDB: 2xf1_A
Probab=24.96 E-value=1.5e+02 Score=21.36 Aligned_cols=55 Identities=9% Similarity=0.008 Sum_probs=38.1
Q ss_pred ccEEEEEecCCeEEEEEeecCCCch---hhHHHHHHHHHHHhCCCce--EEEecCCcccCCC
Q 030939 109 GVAELAELDGPFVKIRLRGRFWHKR---STVIARLANYLKQRIPEIL--EVDIEDEKQLDDS 165 (169)
Q Consensus 109 GDVELVdvdgg~VkVrL~GaC~~Cp---~Tlk~gIE~~Lke~IPEI~--~V~i~d~~ql~d~ 165 (169)
-.--+.++....|.|-.-.. +|| -.+=+.=.+.|++.+.++. ++++.|+.+|+|-
T Consensus 64 prY~vy~~~~k~vfI~w~Pd--~a~vk~KMlYASsk~~l~~~l~g~~~~~i~a~d~~dlt~~ 123 (124)
T 3q2b_A 64 CAYVVFDAVSKIHFFMYARE--SSNSRDRMTYASSKQAILKKIEGVNVLTSVIESAQDVADL 123 (124)
T ss_dssp EEEEEEECSSCEEEEEEECT--TSCHHHHHHHHHHHHHHHTTSTTSEECCSCBCSHHHHTTC
T ss_pred cEEEEEecCCCEEEEEECCC--CCChhHhhhhHHHHHHHHHHhCCCceEEEEecCHHHcccc
Confidence 34555666678888877655 566 2333455678888888775 6888999998873
No 78
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=24.46 E-value=80 Score=22.86 Aligned_cols=53 Identities=13% Similarity=0.028 Sum_probs=30.9
Q ss_pred cccEEEEEecCCeEEEEE-eecCC-CchhhHH--HHHHHHHHHhCCCceEEEe-cCCc
Q 030939 108 TGVAELAELDGPFVKIRL-RGRFW-HKRSTVI--ARLANYLKQRIPEILEVDI-EDEK 160 (169)
Q Consensus 108 GGDVELVdvdgg~VkVrL-~GaC~-~Cp~Tlk--~gIE~~Lke~IPEI~~V~i-~d~~ 160 (169)
|-.+.+-++.|..|.|-+ --.|. -||.++. ..+.+.+++.=.+|.-|-+ .|++
T Consensus 22 G~~v~l~d~~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~ 79 (170)
T 4hde_A 22 GKPFGTKDLKGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPD 79 (170)
T ss_dssp SCEEEHHHHTTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTT
T ss_pred CCEEeHHHhCCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecCcc
Confidence 666777777777777765 44675 4883332 2455666665455554433 4543
No 79
>3qae_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; 4-electron oxido-reductase, oxidoreductase; HET: CIT; 2.30A {Streptococcus pneumoniae} PDB: 3qau_A
Probab=24.25 E-value=3.8e+02 Score=24.35 Aligned_cols=36 Identities=11% Similarity=0.083 Sum_probs=27.4
Q ss_pred cCCeEEEEEeecCCCch-----hhHHHHHHHHHHHhCCCce
Q 030939 117 DGPFVKIRLRGRFWHKR-----STVIARLANYLKQRIPEIL 152 (169)
Q Consensus 117 dgg~VkVrL~GaC~~Cp-----~Tlk~gIE~~Lke~IPEI~ 152 (169)
+++.|+||+.-.+.-=. .+..+.+-.+|++..|+..
T Consensus 199 ~g~~l~lrf~~~TgDAMGaNMvn~~~E~v~~~l~~~~~~~~ 239 (458)
T 3qae_A 199 EPDFLVVYIHVDTQEAMGANMLNTMLEALKPVLEELSQGQS 239 (458)
T ss_dssp SSCEEEEEEEEECTTSCCHHHHHHHHHHHHHHHHHHHTSEE
T ss_pred CCCEEEEEEEEeccccccchHHHHHHHHHHHHHHHhCCCce
Confidence 57899999987765444 5667778889998888754
No 80
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=23.95 E-value=46 Score=19.29 Aligned_cols=31 Identities=10% Similarity=0.236 Sum_probs=19.7
Q ss_pred EEEEEeec-CCCchhhHHHHHHHHHHHhCCCceEEEe
Q 030939 121 VKIRLRGR-FWHKRSTVIARLANYLKQRIPEILEVDI 156 (169)
Q Consensus 121 VkVrL~Ga-C~~Cp~Tlk~gIE~~Lke~IPEI~~V~i 156 (169)
+.+++.|. |.+|... |++.|+ ++|+|..|.+
T Consensus 5 ~~~~v~gm~C~~C~~~----i~~~l~-~~~gv~~~~v 36 (72)
T 1aw0_A 5 TVINIDGMTCNSCVQS----IEGVIS-KKPGVKSIRV 36 (72)
T ss_dssp EEEEEECCCHHHHHHH----HHHHHH-TSTTCCCEEE
T ss_pred EEEEECCeecHHHHHH----HHHHHh-cCCCeEEEEE
Confidence 45667774 7777644 556664 4788876655
No 81
>2idl_A Hypothetical protein; conserved hypothetical, MCSG, PSI2, MAD, structural genomics structure initiative; 1.70A {Streptococcus pneumoniae} SCOP: d.64.2.1
Probab=23.62 E-value=1.7e+02 Score=21.16 Aligned_cols=50 Identities=18% Similarity=0.338 Sum_probs=33.6
Q ss_pred ccEEEEEecCCeEEEEEeecCCCch--------hhHHHHHHHHHHHhCCCceEEEecCC
Q 030939 109 GVAELAELDGPFVKIRLRGRFWHKR--------STVIARLANYLKQRIPEILEVDIEDE 159 (169)
Q Consensus 109 GDVELVdvdgg~VkVrL~GaC~~Cp--------~Tlk~gIE~~Lke~IPEI~~V~i~d~ 159 (169)
-+++..+.++|.+++++......-+ .|+..+++. |.+..|+-.+++.+.|
T Consensus 59 ~~~~~~~~~~G~l~~~~~~~~~~~~~~~~q~ll~~~~~gL~~-i~~~Yp~yI~i~~~~~ 116 (117)
T 2idl_A 59 PILELNEDEGGYLMVEIPKDLPSHQREMTQLFFESFFLGMAN-LSENYSEFVQTRVITE 116 (117)
T ss_dssp CEEEEECSTTCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH-HHHHTTTTEEEEEEC-
T ss_pred ceEEeecCCCCEEEEEEcCCCccchhHHHHHHHHHHHHHHHH-HHHhCcccEEEEEEcC
Confidence 3455545578999999998642111 567777744 7778999888876543
No 82
>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus}
Probab=23.53 E-value=92 Score=22.29 Aligned_cols=29 Identities=17% Similarity=0.098 Sum_probs=21.0
Q ss_pred CCCch-hhHHHHHHHHHHHhCCCceEEEec
Q 030939 129 FWHKR-STVIARLANYLKQRIPEILEVDIE 157 (169)
Q Consensus 129 C~~Cp-~Tlk~gIE~~Lke~IPEI~~V~i~ 157 (169)
|..|. +.--+.+.+.|.+.+|+-.+|++.
T Consensus 10 C~~C~y~~ra~~laqeLl~~Fp~~l~V~~~ 39 (96)
T 2npb_A 10 SGACGYKPKYLQLKEKLEHEFPGCLDICGE 39 (96)
T ss_dssp CCCSCHHHHHHHHHHHHHHHSBTTEEEEEC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCcceEEEEE
Confidence 88888 444456889999999995555443
No 83
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=23.25 E-value=57 Score=21.59 Aligned_cols=28 Identities=7% Similarity=0.063 Sum_probs=17.1
Q ss_pred cccEEEEEecCCeEEEEEee-cCCCchhh
Q 030939 108 TGVAELAELDGPFVKIRLRG-RFWHKRST 135 (169)
Q Consensus 108 GGDVELVdvdgg~VkVrL~G-aC~~Cp~T 135 (169)
|..+.+-++.|..|.|-+-+ -|..|...
T Consensus 21 g~~~~l~~~~gk~vll~f~~~~C~~C~~~ 49 (148)
T 3hcz_A 21 GTYRYLYDVQAKYTILFFWDSQCGHCQQE 49 (148)
T ss_dssp SCBCCGGGCCCSEEEEEEECGGGCTTCSH
T ss_pred CCEEEhHHcCCCEEEEEEECCCCccHHHH
Confidence 55555555666665555544 48999833
No 84
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=23.10 E-value=57 Score=22.51 Aligned_cols=46 Identities=15% Similarity=0.080 Sum_probs=28.0
Q ss_pred eccccchhh-cccCCCCCCCccccHHHHHHHHH------HHHHHHhhccccCcCCcccEE
Q 030939 60 SIDRGYLTR-TAAGGVPPPPLDLTEDNVRQVIA------DARGELAQLFDTSVGITGVAE 112 (169)
Q Consensus 60 ~~~r~~~~~-~~~~~~~~~~l~LteE~Ve~VLe------eiRP~L~~Df~~~vGiGGDVE 112 (169)
+..|.+... +.+.+++...-.-.++.|++..+ +++-+|.+- +||+|
T Consensus 6 ~~~r~~~~~~a~~~~~~~~~~~~~ee~I~~L~eMGF~r~~a~~AL~~~-------~~nve 58 (73)
T 1vg5_A 6 SGSRQAPIANAAVLPQSQGRVAASEEQIQKLVAMGFDRTQVEVALAAA-------DDDLT 58 (73)
T ss_dssp CCCCCCCCSCCCCCSSSCCCSCCCHHHHHHHHTTTCCHHHHHHHHHHH-------TSCHH
T ss_pred ccccccccccCCCCCCCccCCcccHHHHHHHHHcCCCHHHHHHHHHHh-------CCCHH
Confidence 334443333 44445554444566888888875 357888888 77764
No 85
>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17
Probab=23.00 E-value=89 Score=23.78 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=25.5
Q ss_pred EEEEEeec---CCCch-----hhHHHHHHHHHHHhCCC----ceEEEec
Q 030939 121 VKIRLRGR---FWHKR-----STVIARLANYLKQRIPE----ILEVDIE 157 (169)
Q Consensus 121 VkVrL~Ga---C~~Cp-----~Tlk~gIE~~Lke~IPE----I~~V~i~ 157 (169)
|.|-.-|| |++|- --.-+.++.+|+++.|+ +.-|.+.
T Consensus 8 v~i~VYGAe~iCASCVnaPSSkeTyEWLqAal~RKyp~~~f~~~YIDI~ 56 (111)
T 1xg8_A 8 NAVVVYGADVICASCVNAPTSKDIYDWLQPLLKRKYPNISFKYTYIDIT 56 (111)
T ss_dssp EEEEEEECSSCCGGGSSSCCHHHHHHHHHHHHHHHCTTSCEEEEEEETT
T ss_pred EEEEEEcccccchhccCCCCchhHHHHHHHHHhCcCCCCceEEEEEecc
Confidence 55666676 77776 22334899999999997 4556664
No 86
>3e8p_A Uncharacterized protein; X-RAY Q8E9M7 SOR246 NESG structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shewanella oneidensis}
Probab=22.98 E-value=1e+02 Score=22.57 Aligned_cols=30 Identities=10% Similarity=-0.136 Sum_probs=21.8
Q ss_pred HHHHhhccccCcCCcccEEEEEecCCeEEEEEeecCCCc
Q 030939 94 RGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHK 132 (169)
Q Consensus 94 RP~L~~Df~~~vGiGGDVELVdvdgg~VkVrL~GaC~~C 132 (169)
-|+.+.. | +++++++++.+.+++.-.=..|
T Consensus 31 ~pf~~~l-------G--i~~~~~~~g~~~~~~~~~~~~~ 60 (164)
T 3e8p_A 31 VPFHNLL-------G--LDIKRYDIDGVEVAINMKPELI 60 (164)
T ss_dssp CHHHHHH-------T--CEEEEESSSCEEEEEECCGGGE
T ss_pred CcHHHhc-------C--cEEEEEeCCEEEEEEEcCHHHh
Confidence 4777766 3 7899999898888886554444
No 87
>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A
Probab=22.91 E-value=73 Score=17.80 Aligned_cols=31 Identities=3% Similarity=0.038 Sum_probs=19.0
Q ss_pred EEEEee-cCCCchhhHHHHHHHHHHHhCCCceEEEec
Q 030939 122 KIRLRG-RFWHKRSTVIARLANYLKQRIPEILEVDIE 157 (169)
Q Consensus 122 kVrL~G-aC~~Cp~Tlk~gIE~~Lke~IPEI~~V~i~ 157 (169)
.+++.| .|.+|... |++.|++ +|+|..+.+.
T Consensus 4 ~~~v~gm~C~~C~~~----i~~~l~~-~~gv~~~~v~ 35 (64)
T 2xmm_A 4 QLTVPTIACEACAEA----VTKAVQN-EDAQATVQVD 35 (64)
T ss_dssp EEECTTCCSHHHHHH----HHHHHHH-HCTTCEEEEC
T ss_pred EEEECCcCcHHHHHH----HHHHHhc-CCCcEEEEEE
Confidence 455555 47777655 5555553 6888776653
No 88
>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana}
Probab=22.44 E-value=1.4e+02 Score=18.94 Aligned_cols=31 Identities=16% Similarity=0.189 Sum_probs=21.0
Q ss_pred EEEEEee-cCCCchhhHHHHHHHHHHHhCCCceEEEe
Q 030939 121 VKIRLRG-RFWHKRSTVIARLANYLKQRIPEILEVDI 156 (169)
Q Consensus 121 VkVrL~G-aC~~Cp~Tlk~gIE~~Lke~IPEI~~V~i 156 (169)
+.+++.| .|.+|... |++.|. .+|+|..|.+
T Consensus 18 ~~~~v~gm~C~~C~~~----ie~~l~-~~~GV~~~~v 49 (95)
T 2kkh_A 18 SYFDVLGICCTSEVPI----IENILK-SLDGVKEYSV 49 (95)
T ss_dssp EEEEETTCCTTTTHHH----HHHHHH-HSSSEEEEEE
T ss_pred EEEEECCcCCHHHHHH----HHHHHh-cCCCeeEEEE
Confidence 4566777 49999765 455555 4788877765
No 89
>2lxf_A Uncharacterized protein; beaver fever, giardiasis, seattle structural genomics center infectious disease, ssgcid, structural genomics; NMR {Giardia lamblia}
Probab=22.43 E-value=1.5e+02 Score=22.09 Aligned_cols=56 Identities=18% Similarity=0.233 Sum_probs=34.2
Q ss_pred HHHHhhccccCcCCcccEEEEEecCCeEEEEEeecCCCchhhHHHHHHHHHHHhCCC---ceEEEecC
Q 030939 94 RGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIPE---ILEVDIED 158 (169)
Q Consensus 94 RP~L~~Df~~~vGiGGDVELVdvdgg~VkVrL~GaC~~Cp~Tlk~gIE~~Lke~IPE---I~~V~i~d 158 (169)
||+.... -...|+.|-|. ...||.|.|.++|. +..+...+ ++|++- |. |.+|++.+
T Consensus 50 R~~v~~~-A~~lgL~G~Vr--N~~dG~Vei~~eG~----~~~v~~f~-~~l~~g-Pp~A~V~~v~~~~ 108 (121)
T 2lxf_A 50 RKYTKKE-ADALSLVGYVT--NNEDGSVSGVVQGP----KEQVDAFV-KYLHKG-SPKSVVKKVSIHA 108 (121)
T ss_dssp HHHHHHH-HHHHTCEEEEE--ECTTSCEEEEEEEE----HHHHHHHH-HHHHHC-CTTCCEEEEEEEC
T ss_pred hHHHHHH-HHHcCCEEEEE--ECCCCCEEEEEEEC----HHHHHHHH-HHHHhC-CCCCEEEEEEEEE
Confidence 5555443 22457788754 45688999999998 44555444 567654 54 45555443
No 90
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=22.05 E-value=88 Score=25.19 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHhhccccCcCCcc-cEEEEEec
Q 030939 83 EDNVRQVIADARGELAQLFDTSVGITG-VAELAELD 117 (169)
Q Consensus 83 eE~Ve~VLeeiRP~L~~Df~~~vGiGG-DVELVdvd 117 (169)
.|+.+++++++|-+|... |+ ++|.+++|
T Consensus 46 ~~~~~~A~~~i~~~l~~~-------~~i~~e~~~vd 74 (244)
T 2wte_A 46 VSGTRAAIESLRAQISRL-------NYPPPRIYEIE 74 (244)
T ss_dssp CHHHHHHHHHHHHHHHHH-------TCCCEEEEEEC
T ss_pred chhHHHHHHHHHHHHHHc-------CCCceEEEEEC
Confidence 379999999999999999 77 89998886
No 91
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens}
Probab=21.81 E-value=1.7e+02 Score=19.70 Aligned_cols=36 Identities=6% Similarity=-0.037 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHhhccccCcCCcccEEEEEecCCeEEEEE
Q 030939 83 EDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRL 125 (169)
Q Consensus 83 eE~Ve~VLeeiRP~L~~Df~~~vGiGGDVELVdvdgg~VkVrL 125 (169)
++-++.+++.++..+.+| .|-|=++|-+++....+.
T Consensus 30 d~ll~~i~~~~~~~l~ad-------~~~i~l~d~~~~~l~~~~ 65 (189)
T 2zmf_A 30 DSLLEHIMIYAKNLVNAD-------RCALFQVDHKNKELYSDL 65 (189)
T ss_dssp HHHHHHHHHHHHHHHTEE-------EEEEEEEETTTTEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCC-------EEEEEEEecCCcEEEEEE
Confidence 567788888999999999 899989888877766554
No 92
>1cnu_A Actophorin, ADF, cofilin; actin-binding protein, contractIle; 2.25A {Acanthamoeba polyphaga} SCOP: d.109.1.2 PDB: 1ahq_A
Probab=21.49 E-value=2.2e+02 Score=20.11 Aligned_cols=44 Identities=14% Similarity=0.211 Sum_probs=29.3
Q ss_pred CeEEEEEeecCCCchhh---HHHHHHHHHHHhCCCc-eEEEecCCcccCC
Q 030939 119 PFVKIRLRGRFWHKRST---VIARLANYLKQRIPEI-LEVDIEDEKQLDD 164 (169)
Q Consensus 119 g~VkVrL~GaC~~Cp~T---lk~gIE~~Lke~IPEI-~~V~i~d~~ql~d 164 (169)
..|.|-..+. +||.. +-+.=...|++.+.++ +++++.|+.+|+.
T Consensus 78 k~vfI~w~Pd--~a~v~~Kmlyassk~~l~~~l~g~~~~i~a~~~~el~~ 125 (137)
T 1cnu_A 78 KITFILWAPD--SAPIKSKMMYTSTKDSIKKKLVGIQVEVQATDAAEISE 125 (137)
T ss_dssp EEEEEEECCT--TSCHHHHHHHHHHHHHHHHHSTTCCEEEEECSTTTTSH
T ss_pred CEEEEEECCC--CCChHHheehHHhHHHHHHHhcCceEEEEECChHHCCH
Confidence 4566666665 66732 2223456777888776 6788999999864
No 93
>4gmj_A CCR4-NOT transcription complex subunit 1; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens} PDB: 4gml_A
Probab=21.27 E-value=42 Score=27.90 Aligned_cols=18 Identities=28% Similarity=0.414 Sum_probs=16.5
Q ss_pred hHHHHHHhhcCccccCcc
Q 030939 22 CFLRKILSTCNHSKAFNK 39 (169)
Q Consensus 22 ~~l~~~~~~c~~s~~f~~ 39 (169)
||..+||..|..|+-|.|
T Consensus 149 PFVcKvLe~~~~S~iFkP 166 (229)
T 4gmj_A 149 PFVAKVLESSIRSVVFRP 166 (229)
T ss_dssp HHHHHHHHTTTTCTTTST
T ss_pred hhHHHHHHhcccCCcCCC
Confidence 789999999999999965
No 94
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=21.16 E-value=2.4e+02 Score=20.48 Aligned_cols=46 Identities=11% Similarity=0.119 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhccccCcCCcccEEEEEecCCeEEEEEeecCCCchhhHHHHHHHHHHHhCCCceEE
Q 030939 88 QVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIPEILEV 154 (169)
Q Consensus 88 ~VLeeiRP~L~~Df~~~vGiGGDVELVdvdgg~VkVrL~GaC~~Cp~Tlk~gIE~~Lke~IPEI~~V 154 (169)
.++++|.-+|.++ .-|||++.+.| +.+.++..+..-.+-=-++++|
T Consensus 31 ~vi~ei~~aL~~h------------------ELIKVkvl~~~---~~d~~e~a~~la~~t~a~vVq~ 76 (104)
T 1rq8_A 31 NMIKQIDDTLENR------------------ELIKVHVLQNN---FDDKKELAETLSEATRSELVQV 76 (104)
T ss_dssp HHHHHHHHHHHHS------------------SEEEEEECCCC---HHHHHHHHHHHHHHHTEEEEEE
T ss_pred HHHHHHHHHHHHC------------------CcEEEEEeCCC---HHHHHHHHHHHHHHhCCEEEEE
Confidence 4566777778888 67889998875 6555544433333332344443
No 95
>2qn6_B Translation initiation factor 2 alpha subunit; initiation of translation, GTP-binding, nucleotide-binding, protein biosynthesis; HET: GDP; 2.15A {Sulfolobus solfataricus} SCOP: d.58.51.1 PDB: 2qmu_B* 3qsy_B*
Probab=20.97 E-value=81 Score=22.49 Aligned_cols=27 Identities=7% Similarity=-0.023 Sum_probs=21.6
Q ss_pred ccHHHHHHHHHHHHHHHhhccccCcCCcccEEEE
Q 030939 81 LTEDNVRQVIADARGELAQLFDTSVGITGVAELA 114 (169)
Q Consensus 81 LteE~Ve~VLeeiRP~L~~Df~~~vGiGGDVELV 114 (169)
.-++.++++++.++-.+... ||..+++
T Consensus 65 ~ge~~L~~ai~~i~~~i~~~-------gG~~~v~ 91 (93)
T 2qn6_B 65 EASEALNQIISNLIKIGKEE-------NVDISVV 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-------TEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHh-------CCEEEEE
Confidence 34667777777889999999 9998875
No 96
>3b49_A LIN2189 protein; BIG 860.1, structural genomics, MCSG, SAD, PSI-2, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.60A {Listeria innocua CLIP11262}
Probab=20.70 E-value=2.1e+02 Score=21.55 Aligned_cols=58 Identities=19% Similarity=0.188 Sum_probs=41.6
Q ss_pred ccHHHHHHHHHHHHHHH-hhccccCcCCcccEEEEEecCC-eEEEEEeecCCCchhhHHHHHHHHHHH
Q 030939 81 LTEDNVRQVIADARGEL-AQLFDTSVGITGVAELAELDGP-FVKIRLRGRFWHKRSTVIARLANYLKQ 146 (169)
Q Consensus 81 LteE~Ve~VLeeiRP~L-~~Df~~~vGiGGDVELVdvdgg-~VkVrL~GaC~~Cp~Tlk~gIE~~Lke 146 (169)
.+.+.++.++++++--. ..+ .+++++.++.+| .+.++.+|....-+.+..... +++.+
T Consensus 114 v~~~~~~~a~~~~~~~~~~~~-------~~~v~~~~ip~g~~a~~~h~G~y~~~~~~~~~l~-~wl~~ 173 (211)
T 3b49_A 114 VTEEVLEWAKEVARKKKPDVD-------TSRVKLVRFEEGECVQMMHVGPFSEEVHTVAEMH-QFMET 173 (211)
T ss_dssp CCHHHHHHHHHHHHHHCTTSC-------CTTCEEEEEEEEEEEEEEEESCGGGHHHHHHHHH-HHHHH
T ss_pred ccHHHHHHHHHHHhccCCCCC-------cccceEEEeCCceEEEEEEEcchhhHHHHHHHHH-HHHHH
Confidence 57788888888775443 224 567999999654 589999999877666666444 77755
No 97
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=20.70 E-value=63 Score=21.74 Aligned_cols=41 Identities=17% Similarity=0.261 Sum_probs=23.7
Q ss_pred cccEEEEEecCCeEEEEEe-ecCCCchhhHHHHHHHHHHHhCCC
Q 030939 108 TGVAELAELDGPFVKIRLR-GRFWHKRSTVIARLANYLKQRIPE 150 (169)
Q Consensus 108 GGDVELVdvdgg~VkVrL~-GaC~~Cp~Tlk~gIE~~Lke~IPE 150 (169)
|+.+.+-+..|..|.|-+- --|..|...+. .+++ +.+++++
T Consensus 18 g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~-~l~~-l~~~~~~ 59 (152)
T 3gl3_A 18 TGVVKLSDKTGSVVYLDFWASWCGPCRQSFP-WMNQ-MQAKYKA 59 (152)
T ss_dssp SSEEEGGGGTTSEEEEEEECTTCTHHHHHHH-HHHH-HHHHHGG
T ss_pred CCeEeHHHhCCCEEEEEEECCcCHHHHHHHH-HHHH-HHHHhhc
Confidence 7777777777766666554 34777774443 2333 3444444
No 98
>1aps_A Acylphosphatase; hydrolase(acting on acid anhydrides); NMR {Equus caballus} SCOP: d.58.10.1
Probab=20.65 E-value=14 Score=26.10 Aligned_cols=40 Identities=15% Similarity=0.226 Sum_probs=24.9
Q ss_pred cCCcccEEEEEecCCeEEEEEeecCCCchhhHHHHHHHHHHHhCCCc
Q 030939 105 VGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIPEI 151 (169)
Q Consensus 105 vGiGGDVELVdvdgg~VkVrL~GaC~~Cp~Tlk~gIE~~Lke~IPEI 151 (169)
.|+.|-| -...||.|.+.++|. +..+. ...++|+++-|..
T Consensus 33 lgL~G~V--~N~~dG~Vei~~eG~----~~~l~-~f~~~l~~~gP~~ 72 (98)
T 1aps_A 33 IGVVGWV--KNTSKGTVTGQVQGP----EEKVN-SMKSWLSKVGSPS 72 (98)
T ss_dssp HTCEEEE--ECCTTCEEEEEEEEE----HHHHH-HHHHSSSSCCCSS
T ss_pred cCCeEEE--EECCCCcEEEEEEeC----HHHHH-HHHHHHhhcCCCc
Confidence 5778864 355689999999998 22333 3335555445543
No 99
>1q4r_A Protein AT3G17210; center for eukaryotic structural genom structural genomics, protein structure initiative, CESG, UN function; 1.90A {Arabidopsis thaliana} SCOP: d.58.4.4 PDB: 1q53_A 2q3p_A
Probab=20.60 E-value=1.7e+02 Score=20.28 Aligned_cols=38 Identities=8% Similarity=0.055 Sum_probs=24.0
Q ss_pred CeEEEEEeecCCCch-hhHHHHHHHHHHHhCCCceEEEec
Q 030939 119 PFVKIRLRGRFWHKR-STVIARLANYLKQRIPEILEVDIE 157 (169)
Q Consensus 119 g~VkVrL~GaC~~Cp-~Tlk~gIE~~Lke~IPEI~~V~i~ 157 (169)
.+|..+|+..=..-- ..++.++ ..|+..||+|+.+++.
T Consensus 13 HiVlfklk~~~~~~~~~~~~~~l-~~L~~~ip~i~~~~~G 51 (112)
T 1q4r_A 13 HVLLASFKDGVSPEKIEELIKGY-ANLVNLIEPMKAFHWG 51 (112)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHH-HTHHHHCTTCCEEEEE
T ss_pred EEEEEEECCCCCHHHHHHHHHHH-HHHhhhCCceEEEEEc
Confidence 457777775422111 3344455 5678889999999874
No 100
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=20.52 E-value=92 Score=21.17 Aligned_cols=31 Identities=13% Similarity=0.372 Sum_probs=20.9
Q ss_pred EEEEEee-cCCCchhhHHHHHHHHHHHhCCCceEEEe
Q 030939 121 VKIRLRG-RFWHKRSTVIARLANYLKQRIPEILEVDI 156 (169)
Q Consensus 121 VkVrL~G-aC~~Cp~Tlk~gIE~~Lke~IPEI~~V~i 156 (169)
..+++.| .|.+|... |++.|.+ +|++..+.+
T Consensus 8 ~~~~v~gm~C~~C~~~----ie~~l~~-~~gv~~~~v 39 (151)
T 1p6t_A 8 IAMQVSGMTCAACAAR----IEKGLKR-MPGVTDANV 39 (151)
T ss_dssp EEEEEESCCSSHHHHH----HHHHHTT-SSSEEEEEE
T ss_pred EEEEECCCcCHHHHHH----HHHHHhc-CCCeeEEEE
Confidence 4567777 57777544 6677765 898877654
No 101
>3cgi_A Propanediol utilization protein PDUU; circular permutation, beta barrel, bacterial microcompartmen propanediol, signaling protein; 1.80A {Salmonella typhimurium}
Probab=20.06 E-value=1.2e+02 Score=22.92 Aligned_cols=33 Identities=27% Similarity=0.215 Sum_probs=24.8
Q ss_pred cccEEEEEecCCeEEEEEeecCCCchhhHHHHHHHHH
Q 030939 108 TGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYL 144 (169)
Q Consensus 108 GGDVELVdvdgg~VkVrL~GaC~~Cp~Tlk~gIE~~L 144 (169)
..+|++++++++.+.+-+.|- ..-++..++..+
T Consensus 67 AA~V~lv~~~~g~g~v~i~Gd----vsaV~aAvea~~ 99 (124)
T 3cgi_A 67 SGAVEIGFLDRFTGAVVLTGD----VSAVEYALKQVT 99 (124)
T ss_dssp SSSEEEEEEETTTTEEEEEEC----HHHHHHHHHHHH
T ss_pred hcCcEEEEEECCEEEEEEEEC----HHHHHHHHHHHH
Confidence 458999999998888889994 455666665543
Done!