Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>030940
MAVASLQIGKPSLLSSVSISQSNFPGKLDSGKVFLRSRCLIRRKFKVCCGVQEGDKQSNG
EEPPESLFMKELKRRGMTPTSLLEDSSRTDSGLDDKTKLKEEDIGFSRRNTVSTEIDKSL
ADQRERSMALNSEGLEGRLTIPLIKKHSRELILAFLHMHSSHLVKLLAI

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030940
        (169 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2031010 - symbol:AT1G50020 "AT1G50020" species...   237  5.7e-20   1


>TAIR|locus:2031010 [details] [associations]
            symbol:AT1G50020 "AT1G50020" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0009535 "chloroplast thylakoid membrane"
            evidence=IDA] EMBL:CP002684 GO:GO:0009535 EMBL:AC015445
            UniGene:At.47482 UniGene:At.71023 EMBL:AF334727 EMBL:AF360171
            IPI:IPI00518695 PIR:F96536 RefSeq:NP_175424.1 STRING:Q9LPM3
            PRIDE:Q9LPM3 EnsemblPlants:AT1G50020.1 GeneID:841426
            KEGG:ath:AT1G50020 TAIR:At1g50020 InParanoid:Q9LPM3 OMA:PPYIDPY
            PhylomeDB:Q9LPM3 ProtClustDB:CLSN2682701 ArrayExpress:Q9LPM3
            Genevestigator:Q9LPM3 Uniprot:Q9LPM3
        Length = 209

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 68/140 (48%), Positives = 82/140 (58%)

Query:     1 MAVASLQIGKPXXXXXXXXXXXNFPGKLDSGK-VFLRSRCLIRRKFKVCCG-VQEGDKQS 58
             MA +SL+I K            + P KL+  K VF         + +V    +  GD QS
Sbjct:     1 MASSSLEIVKLCGSPVSFPRHKS-PIKLECRKRVFRLPNSRSWHRLRVSSSALNGGDNQS 59

Query:    59 NGEEPPESLFMKELKRRGMTPTSLLEDSSRTDSGLDDKTKLKEEDIGFSRRNTVSTE-ID 117
              GEEPPESLFMKELKRRGMTPTSLL+D    D    D+ K  +E  G S + T +T   D
Sbjct:    60 KGEEPPESLFMKELKRRGMTPTSLLQDYE-VDQ---DEIKTGKET-GNSSKTTATTPAFD 114

Query:   118 KSLADQRERSMALNSEGLEG 137
             KSL +QRERS+ALNSEGLEG
Sbjct:   115 KSLLNQRERSLALNSEGLEG 134


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.134   0.372    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      169       158   0.00085  106 3  11 22  0.38    32
                                                     30  0.43    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  535 (57 KB)
  Total size of DFA:  119 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.54u 0.16s 17.70t   Elapsed:  00:00:00
  Total cpu time:  17.54u 0.16s 17.70t   Elapsed:  00:00:00
  Start:  Fri May 10 04:53:52 2013   End:  Fri May 10 04:53:52 2013

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