BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030940
         (169 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q63369|NFKB1_RAT Nuclear factor NF-kappa-B p105 subunit (Fragment) OS=Rattus
           norvegicus GN=Nfkb1 PE=2 SV=1
          Length = 522

 Score = 34.7 bits (78), Expect = 0.30,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 30/125 (24%)

Query: 55  DKQSNGEEPPESLFMKELKRRGMTPTSLLEDSSRTDSGLDDKTKLKEEDIGFSRRNTVST 114
           +K++ GE P  SLFM   K   + P S +ED              KEED+GF      + 
Sbjct: 8   EKETQGEGP--SLFMASTKTEAIAPASTMED--------------KEEDVGFQD----NL 47

Query: 115 EIDKSLADQRERSMALNSEGLEGRLTIPL-IKKH---------SRELILAFLHMHSSHLV 164
            ++K+L   +  + AL    + G + + L +++H            L LA +H+H+  + 
Sbjct: 48  FLEKALQLAKRHANALFDYAVTGDVKMLLAVQRHLTAVQDENGDSVLHLAIIHLHAQLVR 107

Query: 165 KLLAI 169
            LL +
Sbjct: 108 DLLEV 112


>sp|Q1DN93|ATG1_COCIM Serine/threonine-protein kinase ATG1 OS=Coccidioides immitis
           (strain RS) GN=ATG1 PE=3 SV=1
          Length = 969

 Score = 31.6 bits (70), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 11/86 (12%)

Query: 23  NFPGKLDSGKVFLRSRCLIRRKFKVCCGVQEGDKQSNGEEPPESLFMKELKRRGMTPTSL 82
           +F  +L S   FLR++ LI R  K          Q+    PP S + K L R  + P   
Sbjct: 152 HFLKQLASALQFLRTKDLIHRDLK---------PQNLLLNPPPSTYAKGLLR--IVPYKT 200

Query: 83  LEDSSRTDSGLDDKTKLKEEDIGFSR 108
            EDS     G++    LK  D GF+R
Sbjct: 201 REDSFTPLVGVESLPMLKIADFGFAR 226


>sp|Q8K3E5|AHI1_MOUSE Jouberin OS=Mus musculus GN=Ahi1 PE=1 SV=2
          Length = 1047

 Score = 30.8 bits (68), Expect = 3.9,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 62  EPPESLFMKELKRRGMTPTSLLEDSSRTDSGLDDKTKLKE 101
           E PE +   + K RG TPT+   D SR  +G+++K +L +
Sbjct: 4   ETPEKVDSAQEKVRGKTPTADDSDDSREKTGIEEKGELTD 43


>sp|Q29029|MPIP3_PIG M-phase inducer phosphatase 3 OS=Sus scrofa GN=CDC25C PE=2 SV=1
          Length = 502

 Score = 30.4 bits (67), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 24/133 (18%)

Query: 25  PGKLDSGKVFLRSRCLIRRKFKVCCGVQEGDKQSNGEEPPESLFMKEL---KRRG---MT 78
           P  LD G+         R+K  +C   +  + ++N  +P E    + L   KR G   M+
Sbjct: 124 PNALDHGR---------RKKDAICSSSENKENENNTSKPLEWWAHRNLLFQKRPGGPYMS 174

Query: 79  PTSLLEDSSRTD-------SGLDDKTKL-KEEDIGFSRRNTVSTEI-DKSLADQRERSMA 129
           P SLL++ +  +       S +   +KL K  + G  +   +S E+ + SL DQ E  ++
Sbjct: 175 PLSLLDNGNLVEGEMKHLGSPITAVSKLDKNPERGEDQAEEISDELMEFSLEDQEEAKVS 234

Query: 130 LNSEGLEGRLTIP 142
           LN+  L    ++P
Sbjct: 235 LNTSCLYRSFSLP 247


>sp|O70458|OSMR_MOUSE Oncostatin-M-specific receptor subunit beta OS=Mus musculus GN=Osmr
           PE=1 SV=1
          Length = 971

 Score = 30.4 bits (67), Expect = 6.3,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 21/40 (52%)

Query: 54  GDKQSNGEEPPESLFMKELKRRGMTPTSLLEDSSRTDSGL 93
           GDK +   EPP  +   E KR+ + P SL   S + D+ L
Sbjct: 921 GDKDTLATEPPVPVHGSEYKRQMVVPGSLASPSLKEDNSL 960


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.132    0.360 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,946,714
Number of Sequences: 539616
Number of extensions: 2242545
Number of successful extensions: 5975
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 5958
Number of HSP's gapped (non-prelim): 39
length of query: 169
length of database: 191,569,459
effective HSP length: 109
effective length of query: 60
effective length of database: 132,751,315
effective search space: 7965078900
effective search space used: 7965078900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)