Query 030940
Match_columns 169
No_of_seqs 26 out of 28
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 10:36:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030940.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030940hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fyr_A Sporulation inhibitor S 23.6 23 0.0008 23.3 0.7 15 66-80 29-43 (48)
2 3abi_A Putative uncharacterize 17.4 60 0.002 26.4 2.0 19 60-78 334-361 (365)
3 4hv0_A AVTR; ribbon-helix-heli 15.2 50 0.0017 25.1 0.9 15 65-79 74-88 (106)
4 2b7e_A PRE-mRNA processing pro 10.1 1.3E+02 0.0043 20.3 1.6 23 62-84 3-25 (59)
5 2z2v_A Hypothetical protein PH 9.3 1.2E+02 0.0041 25.3 1.6 13 66-78 349-361 (365)
6 2end_A Endonuclease V; 1.45A { 9.2 1.4E+02 0.005 23.3 1.9 16 67-82 73-88 (138)
7 1c1y_B Proto-onkogene serine/t 8.8 1.3E+02 0.0044 21.3 1.3 19 64-82 24-42 (77)
8 3ny5_A Serine/threonine-protei 7.7 1.5E+02 0.0051 21.9 1.3 20 64-83 36-55 (96)
9 1wxm_A A-RAF proto-oncogene se 7.5 1.9E+02 0.0065 20.9 1.8 19 64-82 30-48 (86)
10 2jg6_A DNA-3-methyladenine gly 7.4 1.3E+02 0.0045 24.2 0.9 16 63-78 140-155 (186)
No 1
>3fyr_A Sporulation inhibitor SDA; helical hairpin, histidine kinase inhibitor, sporulation regulation, alternative initiation; 1.97A {Bacillus subtilis} SCOP: a.2.12.1 PDB: 1pv0_A 3d36_C*
Probab=23.63 E-value=23 Score=23.32 Aligned_cols=15 Identities=33% Similarity=0.521 Sum_probs=10.6
Q ss_pred hhhHHHHHHcCCCCC
Q 030940 66 SLFMKELKRRGMTPT 80 (169)
Q Consensus 66 SLFmKELkRRGmapt 80 (169)
.+..+|+.|||+.|-
T Consensus 29 ~LL~~Ei~RR~L~~~ 43 (48)
T 3fyr_A 29 ELIENEIKRRSLGHI 43 (48)
T ss_dssp HHHHHHHHHHHC---
T ss_pred HHHHHHHHHcCCccc
Confidence 577899999999764
No 2
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=17.44 E-value=60 Score=26.42 Aligned_cols=19 Identities=53% Similarity=0.938 Sum_probs=14.7
Q ss_pred CCCCchhh---------hHHHHHHcCCC
Q 030940 60 GEEPPESL---------FMKELKRRGMT 78 (169)
Q Consensus 60 geE~pESL---------FmKELkRRGma 78 (169)
|=-+||.+ |++||+++|+.
T Consensus 334 GV~~PE~l~~~~~~~~~~l~~L~~~GI~ 361 (365)
T 3abi_A 334 GVIPPEILGMREDTFRRIIDELKERGIS 361 (365)
T ss_dssp EEECTHHHHHSHHHHHHHHHHHHHTTCC
T ss_pred CEEChhhcccchhhHHHHHHHHHHCCCe
Confidence 44577764 89999999984
No 3
>4hv0_A AVTR; ribbon-helix-helix, DNA, transcription, viral protein; 2.60A {Acidianus filamentous virus 6}
Probab=15.15 E-value=50 Score=25.06 Aligned_cols=15 Identities=53% Similarity=0.596 Sum_probs=12.2
Q ss_pred hhhhHHHHHHcCCCC
Q 030940 65 ESLFMKELKRRGMTP 79 (169)
Q Consensus 65 ESLFmKELkRRGmap 79 (169)
|-+---|||+|||+-
T Consensus 74 e~~ik~elkkrg~s~ 88 (106)
T 4hv0_A 74 EILVKLELKKRGTTL 88 (106)
T ss_dssp HHHHHHHHHHHTCCH
T ss_pred hhhHHHHHHHcCCcH
Confidence 567778999999963
No 4
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=10.11 E-value=1.3e+02 Score=20.30 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=19.5
Q ss_pred CCchhhhHHHHHHcCCCCCCccc
Q 030940 62 EPPESLFMKELKRRGMTPTSLLE 84 (169)
Q Consensus 62 E~pESLFmKELkRRGmaptSl~~ 84 (169)
|..|..|++=|++.+..|+-.-+
T Consensus 3 eEae~aF~~lL~~~~V~s~wswe 25 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFS 25 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHH
Confidence 55688999999999999988763
No 5
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} PDB: 3a63_A* 3abi_A*
Probab=9.33 E-value=1.2e+02 Score=25.28 Aligned_cols=13 Identities=38% Similarity=0.721 Sum_probs=11.3
Q ss_pred hhhHHHHHHcCCC
Q 030940 66 SLFMKELKRRGMT 78 (169)
Q Consensus 66 SLFmKELkRRGma 78 (169)
.-||+||+++|+.
T Consensus 349 ~~~l~~L~~~Gi~ 361 (365)
T 2z2v_A 349 RRIIDELKERGIS 361 (365)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHCCCc
Confidence 4799999999983
No 6
>2end_A Endonuclease V; 1.45A {Enterobacteria phage T4} SCOP: a.18.1.1 PDB: 1enj_A 1eni_A 1enk_A 2fcc_A* 1vas_A*
Probab=9.19 E-value=1.4e+02 Score=23.31 Aligned_cols=16 Identities=19% Similarity=0.295 Sum_probs=12.8
Q ss_pred hhHHHHHHcCCCCCCc
Q 030940 67 LFMKELKRRGMTPTSL 82 (169)
Q Consensus 67 LFmKELkRRGmaptSl 82 (169)
.-.+|+.+||+.+.+.
T Consensus 73 ~L~~Em~~RGy~~~~~ 88 (138)
T 2end_A 73 ELIAECLKRGFNIKDT 88 (138)
T ss_dssp HHHHHHHHTTCCCSCC
T ss_pred HHHHHHHHcCCCCCCc
Confidence 3478999999987763
No 7
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=8.79 E-value=1.3e+02 Score=21.33 Aligned_cols=19 Identities=37% Similarity=0.562 Sum_probs=15.1
Q ss_pred chhhhHHHHHHcCCCCCCc
Q 030940 64 PESLFMKELKRRGMTPTSL 82 (169)
Q Consensus 64 pESLFmKELkRRGmaptSl 82 (169)
.-+.-+|=||+||++|.--
T Consensus 24 lrdaL~KaLk~R~L~pe~C 42 (77)
T 1c1y_B 24 LHDCLMKALKVRGLQPECC 42 (77)
T ss_dssp HHHHHHHHHHTTTCCGGGE
T ss_pred HHHHHHHHHHHcCCCHHHe
Confidence 3456899999999988654
No 8
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=7.75 E-value=1.5e+02 Score=21.88 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=15.7
Q ss_pred chhhhHHHHHHcCCCCCCcc
Q 030940 64 PESLFMKELKRRGMTPTSLL 83 (169)
Q Consensus 64 pESLFmKELkRRGmaptSl~ 83 (169)
.-+.-+|=||+||++|.--.
T Consensus 36 lrdaL~KaLk~R~L~pe~C~ 55 (96)
T 3ny5_A 36 VRDSLKKALMMRGLIPECCA 55 (96)
T ss_dssp HHHHHHHHHHTTTCCGGGEE
T ss_pred HHHHHHHHHHHcCCChHHeE
Confidence 44678999999999886543
No 9
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=7.52 E-value=1.9e+02 Score=20.92 Aligned_cols=19 Identities=26% Similarity=0.253 Sum_probs=15.3
Q ss_pred chhhhHHHHHHcCCCCCCc
Q 030940 64 PESLFMKELKRRGMTPTSL 82 (169)
Q Consensus 64 pESLFmKELkRRGmaptSl 82 (169)
.-+.-+|=||+||++|.--
T Consensus 30 lrdaL~KaLk~R~L~pe~C 48 (86)
T 1wxm_A 30 VYDSLDKALKVRGLNQDCC 48 (86)
T ss_dssp SHHHHHHHHHTTTCCSSSE
T ss_pred HHHHHHHHHHHcCCCHHHe
Confidence 4457899999999998654
No 10
>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A
Probab=7.37 E-value=1.3e+02 Score=24.25 Aligned_cols=16 Identities=25% Similarity=0.439 Sum_probs=12.5
Q ss_pred CchhhhHHHHHHcCCC
Q 030940 63 PPESLFMKELKRRGMT 78 (169)
Q Consensus 63 ~pESLFmKELkRRGma 78 (169)
+.+....|+||+||..
T Consensus 140 ~~S~~lsKdLKkrGFk 155 (186)
T 2jg6_A 140 DTATQLSKDLKQYGFK 155 (186)
T ss_dssp HHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHCCCe
Confidence 3344789999999985
Done!