Query 030940
Match_columns 169
No_of_seqs 26 out of 28
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 10:36:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030940.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030940hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2enda_ a.18.1.1 (A:) T4 endon 25.1 14 0.0011 27.0 1.7 15 67-81 72-86 (137)
2 d1zwya1 c.51.4.3 (A:9-181) Hyp 24.2 18 0.0013 26.8 2.2 26 136-163 146-171 (173)
3 d1u14a_ c.51.4.3 (A:) Hypothet 23.8 18 0.0013 26.6 2.2 24 136-161 146-169 (169)
4 d1pv0a_ a.2.12.1 (A:) Sporulat 17.5 29 0.0021 21.4 1.7 14 66-79 27-40 (46)
5 d1rvka1 c.1.11.2 (A:127-381) H 14.0 97 0.0071 21.9 4.2 37 42-78 2-40 (255)
6 d1e3pa2 b.40.4.5 (A:656-717) S 13.8 23 0.0017 21.4 0.5 13 133-145 17-29 (62)
7 d1d6za3 d.17.2.1 (A:186-300) C 11.3 45 0.0033 22.8 1.5 18 66-83 18-35 (115)
8 d2oqea3 d.17.2.1 (A:116-236) C 10.5 46 0.0034 22.9 1.3 16 67-82 18-33 (121)
9 d2gysa4 b.1.2.1 (A:317-416) Co 10.2 73 0.0053 18.8 2.1 14 43-56 74-87 (100)
10 d1w6ga3 d.17.2.1 (A:97-211) Co 10.2 48 0.0035 22.6 1.3 17 66-82 20-36 (115)
No 1
>d2enda_ a.18.1.1 (A:) T4 endonuclease V {Bacteriophage T4 [TaxId: 10665]}
Probab=25.09 E-value=14 Score=27.03 Aligned_cols=15 Identities=20% Similarity=0.344 Sum_probs=12.7
Q ss_pred hhHHHHHHcCCCCCC
Q 030940 67 LFMKELKRRGMTPTS 81 (169)
Q Consensus 67 LFmKELkRRGmaptS 81 (169)
.-++||++||+.|.-
T Consensus 72 ~L~~Em~~RGy~~~~ 86 (137)
T d2enda_ 72 ELIAECLKRGFNIKD 86 (137)
T ss_dssp HHHHHHHHTTCCCSC
T ss_pred HHHHHHHHcCCCCCh
Confidence 468999999998874
No 2
>d1zwya1 c.51.4.3 (A:9-181) Hypothetical protein VC0702 {Vibrio cholerae [TaxId: 666]}
Probab=24.21 E-value=18 Score=26.77 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=20.4
Q ss_pred CCCccHHHHHhhhhhhhhhhhcchhhhh
Q 030940 136 EGRLTIPLIKKHSRELILAFLHMHSSHL 163 (169)
Q Consensus 136 EGLiPRa~l~~~g~~~fL~F~p~~~~~~ 163 (169)
.|+|.|..+-.+ ++.+++.||+...|
T Consensus 146 ~g~i~R~~~~~~--av~~AL~Pf~n~~l 171 (173)
T d1zwya1 146 RHHLTRSTVYHQ--ALILALIPFINPEH 171 (173)
T ss_dssp TTSSCHHHHHHH--HHHHHTHHHHCGGG
T ss_pred CCcccHHHHHHH--HHHHHhhhhhChhh
Confidence 578999944443 78999999998765
No 3
>d1u14a_ c.51.4.3 (A:) Hypothetical protein YjjX {Salmonella typhimurium [TaxId: 90371]}
Probab=23.83 E-value=18 Score=26.62 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=18.0
Q ss_pred CCCccHHHHHhhhhhhhhhhhcchhh
Q 030940 136 EGRLTIPLIKKHSRELILAFLHMHSS 161 (169)
Q Consensus 136 EGLiPRa~l~~~g~~~fL~F~p~~~~ 161 (169)
.|+|.|..+-.+ ++.+++.|||.+
T Consensus 146 ~g~v~R~~~~~~--av~~AL~Pf~na 169 (169)
T d1u14a_ 146 AGKLTRSSVYYQ--AVILALSPFHNA 169 (169)
T ss_dssp TTSSCHHHHHHH--HHHHHTGGGSCC
T ss_pred CCcccHHHHHHH--HHHHHhchhccC
Confidence 578999944442 688999999853
No 4
>d1pv0a_ a.2.12.1 (A:) Sporulation inhibitor Sda {Bacillus subtilis [TaxId: 1423]}
Probab=17.50 E-value=29 Score=21.37 Aligned_cols=14 Identities=36% Similarity=0.572 Sum_probs=11.8
Q ss_pred hhhHHHHHHcCCCC
Q 030940 66 SLFMKELKRRGMTP 79 (169)
Q Consensus 66 SLFmKELkRRGmap 79 (169)
.|+++|+.||.++-
T Consensus 27 ~Lie~Ei~RRsL~h 40 (46)
T d1pv0a_ 27 ELIENEIKRRSLGH 40 (46)
T ss_dssp HHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhhhh
Confidence 58999999999854
No 5
>d1rvka1 c.1.11.2 (A:127-381) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=14.00 E-value=97 Score=21.86 Aligned_cols=37 Identities=30% Similarity=0.482 Sum_probs=27.2
Q ss_pred cceeEEEeeeccCCCCCCCCCCchhh--hHHHHHHcCCC
Q 030940 42 RRKFKVCCGVQEGDKQSNGEEPPESL--FMKELKRRGMT 78 (169)
Q Consensus 42 ~~~lrV~c~~~eg~~~~~geE~pESL--FmKELkRRGma 78 (169)
|-+++|.++...++.-..+...||.. .+|+++.+|.+
T Consensus 2 Rd~i~~Yas~~~~~~~~~~~~tpe~~~~~a~~~~~~Gf~ 40 (255)
T d1rvka1 2 RDKVLAYGSIMCGDELEGGLATPEDYGRFAETLVKRGYK 40 (255)
T ss_dssp CSEEEEEEEECCCCCCTTTTSSHHHHHHHHHHHHHHTCS
T ss_pred CCeeEeceeecCCCccccCCCCHHHHHHHHHHHHHcCCC
Confidence 45788888877776555666677754 78899998864
No 6
>d1e3pa2 b.40.4.5 (A:656-717) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Streptomyces antibioticus [TaxId: 1890]}
Probab=13.79 E-value=23 Score=21.41 Aligned_cols=13 Identities=38% Similarity=0.624 Sum_probs=4.9
Q ss_pred cCcCCCccHHHHH
Q 030940 133 EGLEGRLTIPLIK 145 (169)
Q Consensus 133 EGLEGLiPRa~l~ 145 (169)
.|+|||||...|-
T Consensus 17 ~g~~Glihiseis 29 (62)
T d1e3pa2 17 PGKDGLLHISQIR 29 (62)
T ss_dssp ---CCCCC-----
T ss_pred CCceEEEEHHHcc
Confidence 5999999998664
No 7
>d1d6za3 d.17.2.1 (A:186-300) Copper amine oxidase, domains 1 and 2 {Escherichia coli [TaxId: 562]}
Probab=11.28 E-value=45 Score=22.79 Aligned_cols=18 Identities=28% Similarity=0.501 Sum_probs=14.2
Q ss_pred hhhHHHHHHcCCCCCCcc
Q 030940 66 SLFMKELKRRGMTPTSLL 83 (169)
Q Consensus 66 SLFmKELkRRGmaptSl~ 83 (169)
..|.+.|++||++..+..
T Consensus 18 p~~~aal~kRGi~d~~~V 35 (115)
T d1d6za3 18 EEFAAAVKKRGITDAKKV 35 (115)
T ss_dssp HHHHHHHHHTTCSCGGGE
T ss_pred HHHHHHHHHcCCCCcceE
Confidence 358999999999865554
No 8
>d2oqea3 d.17.2.1 (A:116-236) Copper amine oxidase, domains 1 and 2 {Yeast (Hansenula polymorpha) [TaxId: 4905]}
Probab=10.52 E-value=46 Score=22.88 Aligned_cols=16 Identities=6% Similarity=0.245 Sum_probs=13.1
Q ss_pred hhHHHHHHcCCCCCCc
Q 030940 67 LFMKELKRRGMTPTSL 82 (169)
Q Consensus 67 LFmKELkRRGmaptSl 82 (169)
.|-++|+|||++++-+
T Consensus 18 ~v~~al~~rGi~~~d~ 33 (121)
T d2oqea3 18 AVIEQCVLSGIPANEM 33 (121)
T ss_dssp HHHHHHHHTTCCGGGG
T ss_pred HHHHHHHHcCCCcccc
Confidence 5889999999977643
No 9
>d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.20 E-value=73 Score=18.83 Aligned_cols=14 Identities=7% Similarity=-0.168 Sum_probs=10.3
Q ss_pred ceeEEEeeeccCCC
Q 030940 43 RKFKVCCGVQEGDK 56 (169)
Q Consensus 43 ~~lrV~c~~~eg~~ 56 (169)
-.|||||....|..
T Consensus 74 Y~~rVRa~~~~g~~ 87 (100)
T d2gysa4 74 YWARVRVRTSRTGY 87 (100)
T ss_dssp CEEEEEEEECCTTC
T ss_pred EEEEEEEEECCCCC
Confidence 47899999766643
No 10
>d1w6ga3 d.17.2.1 (A:97-211) Copper amine oxidase, domains 1 and 2 {Arthrobacter globiformis [TaxId: 1665]}
Probab=10.18 E-value=48 Score=22.62 Aligned_cols=17 Identities=18% Similarity=0.395 Sum_probs=13.3
Q ss_pred hhhHHHHHHcCCCCCCc
Q 030940 66 SLFMKELKRRGMTPTSL 82 (169)
Q Consensus 66 SLFmKELkRRGmaptSl 82 (169)
..|.++|+|||+++...
T Consensus 20 p~~~~al~kRGid~~~V 36 (115)
T d1w6ga3 20 ERWLKALAARNLDVSKV 36 (115)
T ss_dssp HHHHHHHHHTTCCGGGE
T ss_pred HHHHHHHHHcCCCHHHE
Confidence 36899999999965544
Done!