BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030941
(168 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1H6Q|A Chain A, Translationally Controlled Tumor-Associated Protein P23fyp
From Schizosaccharomyces Pombe
pdb|1H7Y|A Chain A, Translationally Controlled Tumor-Associated Protein P23fyp
From Schizosaccharomyces Pombe
Length = 168
Score = 100 bits (249), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 98/167 (58%), Gaps = 8/167 (4%)
Query: 1 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWV-VQGAVDVDIGANPSXXXXXXXXX 59
ML+Y+D+++GDEL+SD++ KE+++ I++E + + V V+ DVDIGANPS
Sbjct: 1 MLLYKDVISGDELVSDAYDLKEVDD-IVYEADCQMVTVKQGGDVDIGANPSAEDAEENAE 59
Query: 60 XXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSE---ERQEIFKKNIEG 116
V ++V +FRL +FDKK +++Y+K ++K + +L E ER +F+KN G
Sbjct: 60 EGTET--VNNLVYSFRLSPT-SFDKKSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIG 116
Query: 117 ATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADAL 163
K +L+ D F++GESM D +V Y+E P ++ D L
Sbjct: 117 FVKKILANFKDYDFYIGESMDPDAMVVLMNYREDGITPYMIFFKDGL 163
>pdb|2HR9|A Chain A, Solution Structure Of Human Translationally Controlled
Tumor Protein
Length = 180
Score = 96.7 bits (239), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 92/174 (52%), Gaps = 8/174 (4%)
Query: 1 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVD---IGANPSXXXXXXX 57
M++Y+DL++ DE+ SD + +EI +G+ EVEGK V + ++D IG N S
Sbjct: 1 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 60
Query: 58 XXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGA 117
V DIV LQE +F K+ + Y+K ++K + KL E+R E K + GA
Sbjct: 61 GTESTVITGV-DIVMNHHLQET-SFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGA 118
Query: 118 T---KFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 168
K +L+ + QFF+GE+M+ DG + Y+E P ++ D L+ KC
Sbjct: 119 AEQIKHILANFKNYQFFIGENMNPDGMVALLDYREDGVTPYMIFFKDGLEMEKC 172
>pdb|1YZ1|A Chain A, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein
pdb|1YZ1|B Chain B, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein
pdb|1YZ1|C Chain C, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein
pdb|1YZ1|D Chain D, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein
Length = 174
Score = 96.3 bits (238), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 92/174 (52%), Gaps = 8/174 (4%)
Query: 1 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVD---IGANPSXXXXXXX 57
M++Y+DL++ DE+ SD + +EI +G+ EVEGK V + ++D IG N S
Sbjct: 3 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 62
Query: 58 XXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGA 117
V DIV LQE +F K+ + Y+K ++K + KL E+R E K + GA
Sbjct: 63 GTESTVITGV-DIVMNHHLQET-SFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGA 120
Query: 118 T---KFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 168
K +L+ + QFF+GE+M+ DG + Y+E P ++ D L+ KC
Sbjct: 121 AEQIKHILANFKNYQFFIGENMNPDGMVALLDYREDGVTPYMIFFKDGLEMEKC 174
>pdb|3EBM|A Chain A, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein (Htctp) Mutant E12v
pdb|3EBM|B Chain B, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein (Htctp) Mutant E12v
pdb|3EBM|C Chain C, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein (Htctp) Mutant E12v
pdb|3EBM|D Chain D, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein (Htctp) Mutant E12v
Length = 180
Score = 93.2 bits (230), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 91/174 (52%), Gaps = 8/174 (4%)
Query: 1 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVD---IGANPSXXXXXXX 57
M++Y+DL++ D + SD + +EI +G+ EVEGK V + ++D IG N S
Sbjct: 1 MIIYRDLISHDVMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 60
Query: 58 XXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGA 117
V DIV LQE +F K+ + Y+K ++K + KL E+R E K + GA
Sbjct: 61 GTESTVITGV-DIVMNHHLQET-SFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGA 118
Query: 118 T---KFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 168
K +L+ + QFF+GE+M+ DG + Y+E P ++ D L+ KC
Sbjct: 119 AEQIKHILANFKNYQFFIGENMNPDGMVALLDYREDGVTPYMIFFKDGLEMEKC 172
>pdb|3P3K|A Chain A, The Crystal Structure Of Translationally Controlled Tumor
Protein (Tctp) Of Plasmodium Falciparum
Length = 183
Score = 83.6 bits (205), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 92/175 (52%), Gaps = 13/175 (7%)
Query: 1 MLVYQDLLTGDELLSDSF----PYKEIE-NGILWEVEGKWVVQGAVDVDIGANPSXXXXX 55
M V++D+ T DE+ SDS+ P++ E I +EV+ ++G D I N
Sbjct: 5 MKVFKDVFTNDEVCSDSYVQQDPFEVPEFREIAFEVKSNKRIKGNEDYGIADNSEDAVEG 64
Query: 56 XXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSE---ERQEIFKK 112
V+DIVD+F+L AF KK++ Y+K +++ + L E +R EIFK
Sbjct: 65 MGADVE----HVIDIVDSFQLT-STAFSKKEYSAYIKNYMQKVAKYLEEKKPDRVEIFKT 119
Query: 113 NIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVK 167
+ K +L+ D +F++GES+ + ++++YYK P F+YI+D L E K
Sbjct: 120 KAQPFIKHILTNFDDFEFYMGESLDMEAGIIYSYYKGEEITPRFVYISDGLFEEK 174
>pdb|1TXJ|A Chain A, Crystal Structure Of Translationally Controlled Tumour-
Associated Protein (Tctp) From Plasmodium Knowlesi
Length = 171
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 90/175 (51%), Gaps = 13/175 (7%)
Query: 1 MLVYQDLLTGDELLSDSF----PYKEIE-NGILWEVEGKWVVQGAVDVDIGANPSXXXXX 55
M VY+D+ T DE+ SDS+ P+ + I +EV+ ++G D I N
Sbjct: 1 MKVYKDVFTNDEVCSDSYNQEDPFGIADFREIAFEVKSNKRIKGNDDYGIADNSEEAVDG 60
Query: 56 XXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSE---ERQEIFKK 112
+V+DIVD+F+L + KK++ Y+K +++ + L E +R ++FK
Sbjct: 61 MGADVE----QVIDIVDSFQLT-STSLSKKEYSVYIKNYMQKILKYLEEKKPDRVDVFKT 115
Query: 113 NIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVK 167
+ K +L+ D +F++GES+ D L ++YYK P F+YI+D L E K
Sbjct: 116 KAQPLIKHILTNFDDFEFYMGESLDMDAGLTYSYYKGEEVTPRFVYISDGLYEEK 170
>pdb|2KWB|A Chain A, Minimal Constraint Solution Nmr Structure Of
Translationally Controlled Tumor Protein (Tctp) From
C.Elegans, Northeast S Genomics Consortium Target Wr73
pdb|2LOY|A Chain A, Refined Miminal Constraint Solution Nmr Structure Of
Translationally- Controlled Tumor Protein (Tctp) From
Caenorhabditis Elegans, Northeast Structural Genomics
Consortium Target Wr73
Length = 189
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 96/182 (52%), Gaps = 15/182 (8%)
Query: 1 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDI-GANPSXXXXXXXXX 59
ML+Y+D+ T DEL SDSFP K +++ +++E +GK VV+ ++ + G+NPS
Sbjct: 1 MLIYKDIFTDDELSSDSFPMKLVDD-LVYEFKGKHVVRKEGEIVLAGSNPSAEEGAEDDG 59
Query: 60 XXXXXXKVVDIVDTFRLQEQPAF-DKKQFVTYMKRFIKLLTPKLSEERQ-----EIFKKN 113
+ +DIV +L E + D F Y+K+F+K + + + + + FKK
Sbjct: 60 SDEHVERGIDIVLNHKLVEMNCYEDASMFKAYIKKFMKNVIDHMEKNNRDKADVDAFKKK 119
Query: 114 IEGATKFLLSK--LSDLQFFVGESM---HDDGCLVFAYYK--EGATDPTFLYIADALKEV 166
I+G LL+K +L FF+GE ++G + Y+ +G PT + + +A+ E
Sbjct: 120 IQGWVVSLLAKDRFKNLAFFIGERAAEGAENGQVAIIEYRDVDGTEVPTLMLVKEAIIEE 179
Query: 167 KC 168
KC
Sbjct: 180 KC 181
>pdb|4A26|A Chain A, The Crystal Structure Of Leishmania Major N5,N10-
Methylenetetrahydrofolate DehydrogenaseCYCLOHYDROLASE
pdb|4A26|B Chain B, The Crystal Structure Of Leishmania Major N5,N10-
Methylenetetrahydrofolate DehydrogenaseCYCLOHYDROLASE
Length = 300
Score = 26.2 bits (56), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 31 VEGKWVVQGAVDVDIGANP 49
V+G+W+ +GA VD+G P
Sbjct: 224 VKGEWIKEGAAVVDVGTTP 242
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,606,949
Number of Sequences: 62578
Number of extensions: 159363
Number of successful extensions: 345
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 318
Number of HSP's gapped (non-prelim): 12
length of query: 168
length of database: 14,973,337
effective HSP length: 92
effective length of query: 76
effective length of database: 9,216,161
effective search space: 700428236
effective search space used: 700428236
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)