Query 030941
Match_columns 168
No_of_seqs 114 out of 355
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 10:38:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030941.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030941hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h6q_A TCTP, P23FYP, translati 100.0 3.5E-82 1.2E-86 505.4 15.0 164 1-168 1-168 (168)
2 1yz1_A Translationally control 100.0 3.6E-82 1.2E-86 508.1 8.3 166 1-168 3-174 (174)
3 1txj_A Translationally control 100.0 8.6E-80 3E-84 492.8 10.0 162 1-168 1-171 (171)
4 2kwb_A TCTP, translationally-c 100.0 3.4E-78 1.2E-82 489.8 7.4 166 1-168 1-181 (189)
5 4fqn_A Malcavernin; helical do 66.3 6.7 0.00023 28.3 3.9 27 88-114 15-41 (98)
6 2l7y_A Putative endo-beta-N-ac 48.1 14 0.00048 26.4 3.0 25 129-153 18-42 (98)
7 1v0d_A DNA fragmentation facto 40.4 38 0.0013 29.2 5.0 24 78-102 149-178 (329)
8 3dml_A Putative uncharacterize 31.8 17 0.00058 26.2 1.3 14 152-165 76-89 (116)
9 3evi_A Phosducin-like protein 25.4 33 0.0011 24.1 1.9 43 117-165 44-86 (118)
10 2krx_A ASL3597 protein; struct 24.8 1E+02 0.0034 21.9 4.3 48 82-131 24-72 (94)
11 3evy_A Putative type I restric 24.3 79 0.0027 25.4 4.2 45 86-130 12-71 (239)
12 1g1e_B SIN3A; four-helix bundl 23.8 62 0.0021 22.2 3.0 31 89-119 11-43 (89)
13 2cr7_A Paired amphipathic heli 23.4 52 0.0018 22.1 2.5 24 92-115 14-39 (80)
14 2czy_A Paired amphipathic heli 22.6 55 0.0019 21.8 2.5 25 91-115 7-33 (77)
15 4euy_A Uncharacterized protein 22.5 91 0.0031 20.1 3.6 13 152-164 71-83 (105)
16 2h1e_A Chromo domain protein 1 21.3 26 0.00089 27.1 0.7 12 67-78 14-25 (177)
17 2qsi_A Putative hydrogenase ex 20.8 35 0.0012 25.3 1.3 15 152-166 89-103 (137)
18 1e91_A Paired amphipathic heli 20.4 75 0.0026 21.6 2.8 28 90-117 9-38 (85)
No 1
>1h6q_A TCTP, P23FYP, translationally controlled tumor protein; tumor-associated protein, function unknown; NMR {Schizosaccharomyces pombe} SCOP: b.88.1.2 PDB: 1h7y_A
Probab=100.00 E-value=3.5e-82 Score=505.44 Aligned_cols=164 Identities=38% Similarity=0.713 Sum_probs=160.4
Q ss_pred CeEeeccCCCCeecccCCCceEeeCCEEEEEEEEEEEe-ccccccCCCCCCCCCCCCCCCcccceEEEeeeeeccccccC
Q 030941 1 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQ-GAVDVDIGANPSAEGADEDEGVDDQAVKVVDIVDTFRLQEQ 79 (168)
Q Consensus 1 MiiykDiisgDEm~SD~y~~~~v~~~~~~eV~~k~v~~-~~~~~diG~N~SaE~~e~~e~~~~~~~~vvdiV~~~~Lqe~ 79 (168)
|||||||||||||||||||++++ +|++|||+||+|+| +++|++||||||||++ +|++++++++|||||+||||||
T Consensus 1 MiiykDiitgDEm~SDsy~~k~v-d~~~yEV~gk~v~~~~~~didiGaN~SaE~~--~eg~d~~~~~vvdiV~~~rLqe- 76 (168)
T 1h6q_A 1 MLLYKDVISGDELVSDAYDLKEV-DDIVYEADCQMVTVKQGGDVDIGANPSAEDA--EENAEEGTETVNNLVYSFRLSP- 76 (168)
T ss_dssp CCEEECTTTTSSCEETTTCEEEC-SSSEEEEECCEEEEECCCCSTTSCCCCCCSC--SCSSCCCEEEEEHHHHHTTCEE-
T ss_pred CeEEeecCCCCEEeecCcccEee-CCEEEEEeeEEEEEccCCccccccCcccccc--ccccCCceEEeeeeeEeccccc-
Confidence 99999999999999999999999 67999999999999 9999999999999985 5899999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhccCC---ChHHHHHHHHhHHHHHHHHHhcCCCcceeecCCCCCCceEEEEeccCCCcceEE
Q 030941 80 PAFDKKQFVTYMKRFIKLLTPKL---SEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTF 156 (168)
Q Consensus 80 t~f~Kk~y~~yiK~Y~K~ik~kL---~~erv~~F~~~a~~~vK~il~nfkd~qFf~Gesmd~dgmv~l~~y~edg~tP~~ 156 (168)
|+|||++|++|||+|||+|++|| +||||++|+++||++||+||+||+|||||+||||||||||||++|||||+||||
T Consensus 77 t~fdKk~y~~yiK~YmK~v~~kLee~~pe~v~~Fk~~a~~~vK~il~~fkd~qFf~GEsmd~dgmvvl~~Yredg~tP~~ 156 (168)
T 1h6q_A 77 TSFDKKSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIGFVKKILANFKDYDFYIGESMDPDAMVVLMNYREDGITPYM 156 (168)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHHHHHTTTTTTCCEECTTCCTTSCCEEEEECSSSSCEEE
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhhCcCccEeccCCCCCCceEEEEEecCCCCCeEE
Confidence 99999999999999999999999 689999999999999999999999999999999999999999999999999999
Q ss_pred EEEccccceecC
Q 030941 157 LYIADALKEVKC 168 (168)
Q Consensus 157 ~f~KdGL~eeK~ 168 (168)
+||||||+||||
T Consensus 157 ~f~K~GL~eeK~ 168 (168)
T 1h6q_A 157 IFFKDGLVSEKF 168 (168)
T ss_dssp EEESTTCEEECC
T ss_pred EEEcccceeecC
Confidence 999999999998
No 2
>1yz1_A Translationally controlled tumor protein; unknown function; 2.00A {Homo sapiens} SCOP: b.88.1.2 PDB: 2hr9_A 3ebm_A
Probab=100.00 E-value=3.6e-82 Score=508.09 Aligned_cols=166 Identities=37% Similarity=0.684 Sum_probs=139.4
Q ss_pred CeEeeccCCCCeecccCCCceEeeCCEEEEEEEEEEEecccccc---CCCCCCCCCCCCCCCcccceEEEeeeeeccccc
Q 030941 1 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVD---IGANPSAEGADEDEGVDDQAVKVVDIVDTFRLQ 77 (168)
Q Consensus 1 MiiykDiisgDEm~SD~y~~~~v~~~~~~eV~~k~v~~~~~~~d---iG~N~SaE~~e~~e~~~~~~~~vvdiV~~~~Lq 77 (168)
|||||||||||||||||||++++.||++|||+||+|+|++++++ ||||||||+++ +|++++++++|||||+|||||
T Consensus 3 MiiykDiitgDEm~SDsy~~~~~~dg~~yEV~gk~v~~~~g~idd~liGaN~SaE~~~-~eg~d~~~~~~vdiV~~~rLq 81 (174)
T 1yz1_A 3 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPE-GEGTESTVITGVDIVMNHHLQ 81 (174)
T ss_dssp CEEEEETTTCCEEEETTSEEEEEGGGTEEEEECCBCCC-----------------------------CCCBHHHHHTTCE
T ss_pred eEEEeecCCCCEEeecCcccEEccCCEEEEEeeEEEEecCCCccccccccCccccccc-ccccCcceEEcceeEeecccc
Confidence 99999999999999999999999889999999999999999886 99999999864 689999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHhccCC---ChHHHHHHHHhHHHHHHHHHhcCCCcceeecCCCCCCceEEEEeccCCCcce
Q 030941 78 EQPAFDKKQFVTYMKRFIKLLTPKL---SEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDP 154 (168)
Q Consensus 78 e~t~f~Kk~y~~yiK~Y~K~ik~kL---~~erv~~F~~~a~~~vK~il~nfkd~qFf~Gesmd~dgmv~l~~y~edg~tP 154 (168)
| |+|||++|++|||+|||+|++|| +||||++|+++||++||+||+||||||||+||||||||||||++|||||+||
T Consensus 82 e-t~fdKk~y~~yiK~YmK~v~~kLee~~pe~v~~Fk~~a~~~vK~il~~fkd~qFf~GESmd~dgmvvl~~Yredg~tP 160 (174)
T 1yz1_A 82 E-TSFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDYREDGVTP 160 (174)
T ss_dssp E-ECCCHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHTGGGCEEEECTTCCTTSCEEEEEECTTSSCE
T ss_pred c-cCcCHHHHHHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHHHhhCcCccEeccCCCCCCccEEEEEccCCCcCe
Confidence 9 99999999999999999999999 6899999999999999999999999999999999999999999999999999
Q ss_pred EEEEEccccceecC
Q 030941 155 TFLYIADALKEVKC 168 (168)
Q Consensus 155 ~~~f~KdGL~eeK~ 168 (168)
||+||||||+||||
T Consensus 161 ~~~f~K~GL~eeK~ 174 (174)
T 1yz1_A 161 YMIFFKDGLEMEKC 174 (174)
T ss_dssp EEEEEGGGEEEEEC
T ss_pred EEEEEcccceeecC
Confidence 99999999999998
No 3
>1txj_A Translationally controlled tumour-associated protein (TCTP) from plasmodium knowlesi,...; structural genomics consortium, SGC; 2.00A {Plasmodium knowlesi} SCOP: b.88.1.2 PDB: 3p3k_A
Probab=100.00 E-value=8.6e-80 Score=492.80 Aligned_cols=162 Identities=34% Similarity=0.653 Sum_probs=143.8
Q ss_pred CeEeeccCCCCeecccCC----Cce--EeeCCEEEEEEEEEEEeccccccCCCCCCCCCCCCCCCcccceEEEeeeeecc
Q 030941 1 MLVYQDLLTGDELLSDSF----PYK--EIENGILWEVEGKWVVQGAVDVDIGANPSAEGADEDEGVDDQAVKVVDIVDTF 74 (168)
Q Consensus 1 MiiykDiisgDEm~SD~y----~~~--~v~~~~~~eV~~k~v~~~~~~~diG~N~SaE~~e~~e~~~~~~~~vvdiV~~~ 74 (168)
|||||||||||||||||| |++ ++ +|++|||+||+|+|+++|++||||||||++ +|+++ +++|||||+||
T Consensus 1 MiIykDiitgDEm~SDsy~~~~~~k~~e~-~~~~yEV~gk~v~~~~~~idiGaN~saE~~--~e~~d--~~~vvdIV~~~ 75 (171)
T 1txj_A 1 MKVYKDVFTNDEVCSDSYNQEDPFGIADF-REIAFEVKSNKRIKGNDDYGIADNSEEAVD--GMGAD--VEQVIDIVDSF 75 (171)
T ss_dssp CEEEEETTTCCEEEETTSCCBCGGGCGGG-TTTEEEEECCEEESCC----------------CCCCS--SCEEEHHHHHH
T ss_pred CeEEeecCcCCEEEeccccccCCcccccc-CCEEEEEEeEEEEECCCcccccCCcccccc--ccCcc--eeecceEEEec
Confidence 999999999999999999 999 88 569999999999999999999999999985 47777 99999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHhccCC---ChHHHHHHHHhHHHHHHHHHhcCCCcceeecCCCCCCceEEEEeccCCC
Q 030941 75 RLQEQPAFDKKQFVTYMKRFIKLLTPKL---SEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGA 151 (168)
Q Consensus 75 ~Lqe~t~f~Kk~y~~yiK~Y~K~ik~kL---~~erv~~F~~~a~~~vK~il~nfkd~qFf~Gesmd~dgmv~l~~y~edg 151 (168)
|||| |+||||+|++|||+|||+|++|| +||||++|+++||++||+||+||+|||||+||||||||||||++|||||
T Consensus 76 rL~e-t~f~Kk~y~~yiK~YmK~i~~kLee~~pe~v~~Fk~~a~~~vK~il~~fkd~qFf~GESmd~dgmvvl~~Yredg 154 (171)
T 1txj_A 76 QLTS-TSLSKKEYSVYIKNYMQKILKYLEEKKPDRVDVFKTKAQPLIKHILTNFDDFEFYMGESLDMDAGLTYSYYKGEE 154 (171)
T ss_dssp TCEE-ECCCHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHTGGGCEEEECTTCCTTSCCEEEECCTTC
T ss_pred ceee-cCCCHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhhCcCccEeccCCCCCCceEEEEEecCCC
Confidence 9999 99999999999999999999999 6899999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEccccceecC
Q 030941 152 TDPTFLYIADALKEVKC 168 (168)
Q Consensus 152 ~tP~~~f~KdGL~eeK~ 168 (168)
+||||+||||||+||||
T Consensus 155 ~tP~~~f~K~GL~eeK~ 171 (171)
T 1txj_A 155 VTPRFVYISDGLYEEKF 171 (171)
T ss_dssp SSCEEEEEGGGEEEEEC
T ss_pred CCeEEEEEcccceeecC
Confidence 99999999999999998
No 4
>2kwb_A TCTP, translationally-controlled tumor protein homolog; structural genomics, northeast structural genomics consortiu PSI-2; NMR {Caenorhabditis elegans} PDB: 2loy_A
Probab=100.00 E-value=3.4e-78 Score=489.82 Aligned_cols=166 Identities=36% Similarity=0.676 Sum_probs=160.2
Q ss_pred CeEeeccCCCCeecccCCCceEeeCCEEEEEEEEEEEecccccc-CCCCCCCCCCCCCCCcccceEEEeeeeeccccccC
Q 030941 1 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVD-IGANPSAEGADEDEGVDDQAVKVVDIVDTFRLQEQ 79 (168)
Q Consensus 1 MiiykDiisgDEm~SD~y~~~~v~~~~~~eV~~k~v~~~~~~~d-iG~N~SaE~~e~~e~~~~~~~~vvdiV~~~~Lqe~ 79 (168)
|||||||||||||||||||++++ +|++|||+||+|+|++++++ ||||||||+++++|++++++++|||||+||||||
T Consensus 1 MiIYkDiitgDEmfSDsy~~k~v-d~~~yEV~gK~v~~~~gdidl~GaN~SaE~~~~~eg~d~~~~~vvDIV~n~rLqe- 78 (189)
T 2kwb_A 1 MLIYKDIFTDDELSSDSFPMKLV-DDLVYEFKGKHVVRKEGEIVLAGSNPSAEEGAEDDGSDEHVERGIDIVLNHKLVE- 78 (189)
T ss_dssp CEEEEESSCTTTCEEECCCCEEE-TTTEEEEECCEECCBTTBCCCCCCSCCCSSCCSSCCCGGGCSSEEHHHHTTTEEE-
T ss_pred CeEEeecCCCCEEeecCccCEee-CCEEEEEeeEEEEECCccccccccCccccccccccccCCccEEcceeEEecceee-
Confidence 99999999999999999999999 57999999999999999998 8999999985447899999999999999999999
Q ss_pred CCC--CHHHHHHHHHHHHHHhccCC---ChHH--HHHHHHhHHHHHHHHHh--cCCCcceeecCCCCC---CceEEEEec
Q 030941 80 PAF--DKKQFVTYMKRFIKLLTPKL---SEER--QEIFKKNIEGATKFLLS--KLSDLQFFVGESMHD---DGCLVFAYY 147 (168)
Q Consensus 80 t~f--~Kk~y~~yiK~Y~K~ik~kL---~~er--v~~F~~~a~~~vK~il~--nfkd~qFf~Gesmd~---dgmv~l~~y 147 (168)
|+| ||++|++|||+|||+|++|| +|+| |++|+++||++||+||+ ||||||||+|||||| ||||||++|
T Consensus 79 t~f~~dKk~y~~yiK~YmK~v~~kLee~~pe~e~v~~Fk~~a~~~vK~iL~k~~Fkd~qFf~GESmd~~~~dGmv~l~~Y 158 (189)
T 2kwb_A 79 MNCYEDASMFKAYIKKFMKNVIDHMEKNNRDKADVDAFKKKIQGWVVSLLAKDRFKNLAFFIGERAAEGAENGQVAIIEY 158 (189)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCHHHHTTCEEEEEHHHHHHTSCCCEEEEEE
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHhccccccCccEeccCCCCCCCCCceEEEEEE
Confidence 999 99999999999999999999 5777 99999999999999999 999999999999999 999999999
Q ss_pred cC-CC-cceEEEEEccccceecC
Q 030941 148 KE-GA-TDPTFLYIADALKEVKC 168 (168)
Q Consensus 148 ~e-dg-~tP~~~f~KdGL~eeK~ 168 (168)
|| || +||||+||||||+||||
T Consensus 159 re~dg~~tP~~~ffK~GL~eeK~ 181 (189)
T 2kwb_A 159 RDVDGTEVPTLMLVKEAIIEEKC 181 (189)
T ss_dssp EEETTEEEEEEEEETTTEEEECC
T ss_pred EcCCCCcCeEEEEEccCceEEEe
Confidence 99 99 99999999999999997
No 5
>4fqn_A Malcavernin; helical domain, harmonin-homology domain, protein-protein interaction, HOMO-dimer, protein binding; 1.90A {Homo sapiens}
Probab=66.33 E-value=6.7 Score=28.26 Aligned_cols=27 Identities=19% Similarity=0.342 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHhH
Q 030941 88 VTYMKRFIKLLTPKLSEERQEIFKKNI 114 (168)
Q Consensus 88 ~~yiK~Y~K~ik~kL~~erv~~F~~~a 114 (168)
..-+++||..++.+|+|+++..|-.=.
T Consensus 15 ~e~lqdYM~~L~~~L~~~ElqqFA~Ll 41 (98)
T 4fqn_A 15 TELLQDYMLTLRTKLSSQEIQQFAALL 41 (98)
T ss_dssp HHHHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcChHHHHHHHHHH
Confidence 457999999999999999998886543
No 6
>2l7y_A Putative endo-beta-N-acetylglucosaminidase; putative surface protein, structural protein; NMR {Streptococcus pneumoniae}
Probab=48.12 E-value=14 Score=26.42 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=20.6
Q ss_pred ceeecCCCCCCceEEEEeccCCCcc
Q 030941 129 QFFVGESMHDDGCLVFAYYKEGATD 153 (168)
Q Consensus 129 qFf~Gesmd~dgmv~l~~y~edg~t 153 (168)
+++.||++|..|+++...|.++...
T Consensus 18 ~Y~vGE~LDltGl~v~~~YsDgt~~ 42 (98)
T 2l7y_A 18 DYLVGDSLDLSEGRFAVAYSNDTME 42 (98)
T ss_dssp EEETTTCCCCCSCEEEEEETTSCEE
T ss_pred EEecCCccccCCCEEEEEEcCCCEE
Confidence 3789999999999999999765433
No 7
>1v0d_A DNA fragmentation factor 40 kDa subunit; hydrolase, nuclease, caspase-activated DNAse; HET: DNA; 2.6A {Mus musculus} SCOP: d.4.1.7 PDB: 1f2r_C 1c9f_A 1ibx_A*
Probab=40.38 E-value=38 Score=29.16 Aligned_cols=24 Identities=17% Similarity=0.578 Sum_probs=21.5
Q ss_pred cCCCC-CHHHHHHH-----HHHHHHHhccCC
Q 030941 78 EQPAF-DKKQFVTY-----MKRFIKLLTPKL 102 (168)
Q Consensus 78 e~t~f-~Kk~y~~y-----iK~Y~K~ik~kL 102 (168)
| +.| ||.+|+.| |.+|++++++.|
T Consensus 149 e-~~f~tKe~yM~~~~q~RIRgY~~k~~~~~ 178 (329)
T 1v0d_A 149 E-SRFRNKSGYLRYSCESRIRGYLREVSAYT 178 (329)
T ss_dssp C-TTCCBHHHHHHHHHHHHHHHHHHHHHTTG
T ss_pred c-cccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 688 89999987 999999999999
No 8
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Probab=31.80 E-value=17 Score=26.20 Aligned_cols=14 Identities=29% Similarity=0.586 Sum_probs=11.6
Q ss_pred cceEEEEEccccce
Q 030941 152 TDPTFLYIADALKE 165 (168)
Q Consensus 152 ~tP~~~f~KdGL~e 165 (168)
-||+++||++|=+.
T Consensus 76 g~PT~i~f~~G~ev 89 (116)
T 3dml_A 76 FTPTFVLMAGDVES 89 (116)
T ss_dssp SSSEEEEEETTEEE
T ss_pred CCCEEEEEECCEEE
Confidence 48999999999543
No 9
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}
Probab=25.43 E-value=33 Score=24.09 Aligned_cols=43 Identities=19% Similarity=0.331 Sum_probs=24.9
Q ss_pred HHHHHHhcCCCcceeecCCCCCCceEEEEeccCCCcceEEEEEccccce
Q 030941 117 ATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKE 165 (168)
Q Consensus 117 ~vK~il~nfkd~qFf~Gesmd~dgmv~l~~y~edg~tP~~~f~KdGL~e 165 (168)
.+..+...+.+..|+. .|.|-. + -.| .-...|++++||+|-..
T Consensus 44 ~l~~la~~~~~v~f~k---vd~d~~-~-~~~-~v~~~PT~~~fk~G~~v 86 (118)
T 3evi_A 44 HLSLLARKFPETKFVK---AIVNSC-I-QHY-HDNCLPTIFVYKNGQIE 86 (118)
T ss_dssp HHHHHHHHCTTSEEEE---EEGGGT-S-TTC-CGGGCSEEEEEETTEEE
T ss_pred HHHHHHHHCCCCEEEE---EEhHHh-H-HHC-CCCCCCEEEEEECCEEE
Confidence 3444455567777763 344432 1 122 22368999999999543
No 10
>2krx_A ASL3597 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, unknown function; NMR {Nostoc SP}
Probab=24.80 E-value=1e+02 Score=21.85 Aligned_cols=48 Identities=8% Similarity=0.186 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHHHHHHhc-cCCChHHHHHHHHhHHHHHHHHHhcCCCccee
Q 030941 82 FDKKQFVTYMKRFIKLLT-PKLSEERQEIFKKNIEGATKFLLSKLSDLQFF 131 (168)
Q Consensus 82 f~Kk~y~~yiK~Y~K~ik-~kL~~erv~~F~~~a~~~vK~il~nfkd~qFf 131 (168)
.|+.+...++|+++.... .-| |..++.| ....+++++++.++=++++-
T Consensus 24 LT~~Ell~~Lk~~L~~~~~~~L-P~dL~~~-~s~~~qaq~Lldt~CELei~ 72 (94)
T 2krx_A 24 LTTIELLEKLKGELEKISFSDL-PLELQKL-DSLPAQAQHLIDTSCELDVG 72 (94)
T ss_dssp ECHHHHHHHHHHHHHHSCTTTS-CHHHHHC-CCHHHHHHHHHHHCCCEEEE
T ss_pred CCHHHHHHHHHHHHHhCccccC-CHHHHhC-CCHHHHHHHHHHheeeeeeC
Confidence 399999999999999987 444 4455666 44568889999999988873
No 11
>3evy_A Putative type I restriction enzyme R protein; structural genomics, unknown function, PSI-2, protein structure initiative; 1.95A {Bacteroides fragilis nctc 9343}
Probab=24.34 E-value=79 Score=25.38 Aligned_cols=45 Identities=7% Similarity=0.117 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhcc---CC-Ch---------HHHHHHHHhHHHHHH--HHHhcCCCcce
Q 030941 86 QFVTYMKRFIKLLTP---KL-SE---------ERQEIFKKNIEGATK--FLLSKLSDLQF 130 (168)
Q Consensus 86 ~y~~yiK~Y~K~ik~---kL-~~---------erv~~F~~~a~~~vK--~il~nfkd~qF 130 (168)
+|..|++.|.+++.+ .. .| +..+.|.+..+++.+ .+|..|++|..
T Consensus 12 ~y~e~~~~f~~av~~L~~~~p~p~~i~~l~~e~~k~~Fvk~F~e~~r~~~~L~~Ydef~~ 71 (239)
T 3evy_A 12 PYEKLVERFNEMAAEFLSYFPTVKSVGNLESELDKRRFVILFRAMLRLRNEVKGYNEFDA 71 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHTTSTTCCG
T ss_pred CHHHHHHHHHHHHHHHHHhCCChhhcccCCCHHHHHHHHHHHHHHHHHHHHHhcccccCh
Confidence 677788887665543 22 23 344578888888777 58889999754
No 12
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=23.75 E-value=62 Score=22.22 Aligned_cols=31 Identities=6% Similarity=0.158 Sum_probs=23.5
Q ss_pred HHHHHHHHHhccCC--ChHHHHHHHHhHHHHHH
Q 030941 89 TYMKRFIKLLTPKL--SEERQEIFKKNIEGATK 119 (168)
Q Consensus 89 ~yiK~Y~K~ik~kL--~~erv~~F~~~a~~~vK 119 (168)
..-..|+++||.+. +|+..+.|..-+..+-+
T Consensus 11 ~~A~~YvnkVK~rF~~~p~~Y~~FL~IL~~y~~ 43 (89)
T 1g1e_B 11 NHAINYVNKIKNRFQGQPDIYKAFLEILHTYQK 43 (89)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHh
Confidence 45678999999998 68888888776665543
No 13
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=23.41 E-value=52 Score=22.15 Aligned_cols=24 Identities=4% Similarity=0.141 Sum_probs=14.8
Q ss_pred HHHHHHhccCC--ChHHHHHHHHhHH
Q 030941 92 KRFIKLLTPKL--SEERQEIFKKNIE 115 (168)
Q Consensus 92 K~Y~K~ik~kL--~~erv~~F~~~a~ 115 (168)
..|+++||.++ +|+..+.|..-+.
T Consensus 14 ~~yl~~VK~rF~~~p~~Y~~FL~im~ 39 (80)
T 2cr7_A 14 LTYLDQVKIRFGSDPATYNGFLEIMK 39 (80)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHH
Confidence 35677777777 4666666655443
No 14
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=22.63 E-value=55 Score=21.80 Aligned_cols=25 Identities=4% Similarity=0.126 Sum_probs=18.1
Q ss_pred HHHHHHHhccCC--ChHHHHHHHHhHH
Q 030941 91 MKRFIKLLTPKL--SEERQEIFKKNIE 115 (168)
Q Consensus 91 iK~Y~K~ik~kL--~~erv~~F~~~a~ 115 (168)
-..|+++||.++ +|+..+.|..-+.
T Consensus 7 A~~yl~~VK~~F~~~p~~Y~~FL~im~ 33 (77)
T 2czy_A 7 ALTYLDQVKIRFGSDPATYNGFLEIMK 33 (77)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccChHHHHHHHHHHH
Confidence 457889999888 5777777765444
No 15
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=22.45 E-value=91 Score=20.05 Aligned_cols=13 Identities=31% Similarity=0.447 Sum_probs=10.6
Q ss_pred cceEEEEEccccc
Q 030941 152 TDPTFLYIADALK 164 (168)
Q Consensus 152 ~tP~~~f~KdGL~ 164 (168)
.+|++++|++|-.
T Consensus 71 ~~Pt~~~~~~G~~ 83 (105)
T 4euy_A 71 TGPTVLLFYNGKE 83 (105)
T ss_dssp CCCEEEEEETTEE
T ss_pred CCCEEEEEeCCeE
Confidence 5899999998843
No 16
>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A
Probab=21.26 E-value=26 Score=27.11 Aligned_cols=12 Identities=42% Similarity=0.517 Sum_probs=10.8
Q ss_pred Eeeeeecccccc
Q 030941 67 VVDIVDTFRLQE 78 (168)
Q Consensus 67 vvdiV~~~~Lqe 78 (168)
+||+|++|||.+
T Consensus 14 ~id~v~~hr~~~ 25 (177)
T 2h1e_A 14 GIDIVINHRLKT 25 (177)
T ss_dssp CEEEEEEEEECT
T ss_pred cceeeecCCccc
Confidence 699999999986
No 17
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=20.80 E-value=35 Score=25.30 Aligned_cols=15 Identities=7% Similarity=-0.006 Sum_probs=12.1
Q ss_pred cceEEEEEcccccee
Q 030941 152 TDPTFLYIADALKEV 166 (168)
Q Consensus 152 ~tP~~~f~KdGL~ee 166 (168)
..|+++|||+|-.-.
T Consensus 89 siPTlilFkdG~~v~ 103 (137)
T 2qsi_A 89 VCPSLAVVQPERTLG 103 (137)
T ss_dssp SSSEEEEEECCEEEE
T ss_pred cCCEEEEEECCEEEE
Confidence 489999999996543
No 18
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=20.37 E-value=75 Score=21.57 Aligned_cols=28 Identities=7% Similarity=0.131 Sum_probs=20.8
Q ss_pred HHHHHHHHhccCC--ChHHHHHHHHhHHHH
Q 030941 90 YMKRFIKLLTPKL--SEERQEIFKKNIEGA 117 (168)
Q Consensus 90 yiK~Y~K~ik~kL--~~erv~~F~~~a~~~ 117 (168)
.-..|+++||.++ +|+..+.|..-+..+
T Consensus 9 ~A~~yv~kVK~rF~~~p~~Y~~FL~il~~y 38 (85)
T 1e91_A 9 NAISYVNKIKTRFLDHPEIYRSFLEILHTY 38 (85)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 4567899999998 688877776655444
Done!