BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030942
         (168 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1VSY|5 Chain 5, Proteasome Activator Complex
 pdb|1VSY|8 Chain 8, Proteasome Activator Complex
 pdb|3L5Q|6 Chain 6, Proteasome Activator Complex
 pdb|3L5Q|8 Chain 8, Proteasome Activator Complex
          Length = 997

 Score = 28.5 bits (62), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 35 NFYPPFLVDLKTWYTDEYGDYLFTEKPHFFVGIMWLQ 71
          N +   L  LK W+TD   + +F E P+ F+ + +L+
Sbjct: 53 NMFQILLHGLKVWFTDLGQETVFNEDPNAFIDVDFLE 89


>pdb|4H2B|A Chain A, Human Ecto-5'-Nucleotidase (Cd73): Crystal Form Ii (Open)
           In Complex With Baicalin
          Length = 547

 Score = 26.6 bits (57), Expect = 7.2,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 22/42 (52%)

Query: 113 AELMGSGKAKDELITIYCPFMGLAVLAFLRGLVGQSSKTTSF 154
           A +  SG    ++  +Y P+  L V   + G+VG +SK T F
Sbjct: 140 ANISASGPLASQISGLYLPYKVLPVGDEVVGIVGYTSKETPF 181


>pdb|4H1Y|P Chain P, Human Ecto-5'-Nucleotidase (Cd73): Crystal Form Ii (Open)
           In Complex With Psb11552
          Length = 546

 Score = 26.6 bits (57), Expect = 7.2,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 22/42 (52%)

Query: 113 AELMGSGKAKDELITIYCPFMGLAVLAFLRGLVGQSSKTTSF 154
           A +  SG    ++  +Y P+  L V   + G+VG +SK T F
Sbjct: 139 ANISASGPLASQISGLYLPYKVLPVGDEVVGIVGYTSKETPF 180


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.329    0.142    0.442 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,632,330
Number of Sequences: 62578
Number of extensions: 178165
Number of successful extensions: 379
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 376
Number of HSP's gapped (non-prelim): 4
length of query: 168
length of database: 14,973,337
effective HSP length: 92
effective length of query: 76
effective length of database: 9,216,161
effective search space: 700428236
effective search space used: 700428236
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 48 (23.1 bits)