BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030942
(168 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6DFQ5|TMM97_XENTR Transmembrane protein 97 OS=Xenopus tropicalis GN=tmem97 PE=2 SV=1
Length = 171
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 62/127 (48%), Gaps = 1/127 (0%)
Query: 1 MGAFVKLIDAILFVFFVAIALAVPLIDAQACLPVNFYPPFLVDLKTWYTDEYGDYLFTEK 60
M +L++ I F +F + L+D QA LP + YP L+DL WYT + D+L
Sbjct: 1 MAVCARLLEWIFFFYFFSHIPITLLVDLQAVLPPSLYPQELLDLMKWYTVAFKDHLMANP 60
Query: 61 PHFFVGIMWLQLLFQWPLALVNIFAILTSK-SWLNTTCLIYGSSVLTSMAAVLAELMGSG 119
P +F ++ + + Q P V +A W+ ++Y + V T++ A++ ++
Sbjct: 61 PPWFKSFVYCEAILQLPFFPVAAYAFFKGGCKWIRIPAIVYSAHVATTVIAIIGHILFGE 120
Query: 120 KAKDELI 126
K ++I
Sbjct: 121 FPKSDVI 127
>sp|Q4R8A8|TMM97_MACFA Transmembrane protein 97 OS=Macaca fascicularis GN=Tmem97 PE=2 SV=2
Length = 176
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 16/144 (11%)
Query: 6 KLIDAILFVFFVAIALAVPLIDAQACLPVNFYPPFLVDLKTWYTDEYGDYLFTEKPHFFV 65
+ ++ +L ++F++ +D QA LP YP +L WY E+ D L E P +F
Sbjct: 8 RCVEWLLGIYFLSHIPITLFMDLQAVLPRELYPVEFRNLLKWYAKEFKDPLLQEPPAWFK 67
Query: 66 GIMWLQLLFQWPLALVNIFAILT-SKSWLNTTCLIYGSSVLTSMAAVLAELM------GS 118
++ +L+FQ P + +A L S W+ T +IY +T++ +L+ + S
Sbjct: 68 SFLFCELVFQLPFFPIATYAFLKGSCKWIRTPAIIYSVHTMTTLIPILSTFLFEDFSKAS 127
Query: 119 G---------KAKDELITIYCPFM 133
G + LI++Y P++
Sbjct: 128 GFKGQRPETLHERLTLISVYAPYL 151
>sp|Q3MHW7|TMM97_BOVIN Transmembrane protein 97 OS=Bos taurus GN=TMEM97 PE=2 SV=1
Length = 176
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 17/136 (12%)
Query: 13 FVFFVAIALAVPLIDAQACLPVNFYPPFLVDLKTWYTDEYGDYLFTEKPHFFVGIMWLQL 72
F F I + + L+D Q LP + YP L +L+ WY +E+ D L P +F ++ +L
Sbjct: 16 FYFLSHIPITL-LMDLQGVLPRDLYPVELRNLQQWYIEEFKDPLLQTPPAWFKSFLFCEL 74
Query: 73 LFQWPLALVNIFAILTSK-SWLNTTCLIYGSSVLTSMAAVLAELM-----------GSG- 119
+FQ P + +A W+ T +IY +T++ +L+ L+ G G
Sbjct: 75 VFQLPFFPIAAYAFFKGGCKWIRTPAIIYSVHTMTTLIPILSTLLLDDFSKASHFRGQGP 134
Query: 120 ---KAKDELITIYCPF 132
+ + LI++Y P+
Sbjct: 135 KTFQERLFLISVYIPY 150
>sp|Q8VD00|TMM97_MOUSE Transmembrane protein 97 OS=Mus musculus GN=Tmem97 PE=2 SV=1
Length = 176
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 3/125 (2%)
Query: 1 MGAFV--KLIDAILFVFFVAIALAVPLIDAQACLPVNFYPPFLVDLKTWYTDEYGDYLFT 58
MGA + ++ +L ++FV+ ID QA LP YP +L WY+ E+ D L
Sbjct: 1 MGALAARRCVEWLLGLYFVSHIPITLFIDLQAVLPPELYPQEFSNLLRWYSKEFKDPLMQ 60
Query: 59 EKPHFFVGIMWLQLLFQWPLALVNIFAILT-SKSWLNTTCLIYGSSVLTSMAAVLAELMG 117
E P +F + +L+FQ P + +A S W+ +IY + +T++ +L L+
Sbjct: 61 EPPVWFKSFLLCELVFQLPFFPIAAYAFFKGSCRWIRIPAIIYAAHTITTLIPILYTLLF 120
Query: 118 SGKAK 122
+K
Sbjct: 121 EDFSK 125
>sp|Q5BJF2|TMM97_HUMAN Transmembrane protein 97 OS=Homo sapiens GN=TMEM97 PE=1 SV=1
Length = 176
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 6 KLIDAILFVFFVAIALAVPLIDAQACLPVNFYPPFLVDLKTWYTDEYGDYLFTEKPHFFV 65
+ ++ +L ++F++ +D QA LP YP +L WY E+ D L E P +F
Sbjct: 8 RCVEWLLGLYFLSHIPITLFMDLQAVLPRELYPVEFRNLLKWYAKEFKDPLLQEPPAWFK 67
Query: 66 GIMWLQLLFQWPLALVNIFAILT-SKSWLNTTCLIYGSSVLTSMAAVLAELMGSGKAK 122
++ +L+FQ P + +A L S W+ T +IY +T++ +L+ + +K
Sbjct: 68 SFLFCELVFQLPFFPIATYAFLKGSCKWIRTPAIIYSVHTMTTLIPILSTFLFEDFSK 125
>sp|Q5U3Y7|TMM97_RAT Transmembrane protein 97 OS=Rattus norvegicus GN=Tmem97 PE=2 SV=1
Length = 176
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 3/125 (2%)
Query: 1 MGAFV--KLIDAILFVFFVAIALAVPLIDAQACLPVNFYPPFLVDLKTWYTDEYGDYLFT 58
MGA + ++ +L ++FV+ ID QA LP YP +L WY+ E+ D L
Sbjct: 1 MGAVTARRCVEWLLGLYFVSHIPITMFIDLQALLPPELYPQEFSNLLRWYSKEFKDPLMQ 60
Query: 59 EKPHFFVGIMWLQLLFQWPLALVNIFAILT-SKSWLNTTCLIYGSSVLTSMAAVLAELMG 117
E P +F ++ +L+FQ P + +A S W+ +IY +T++ +L ++
Sbjct: 61 EPPVWFKSFLFCELVFQLPFFPIAAYAFFKGSCRWIRIPAIIYAVHTITTLIPILYTILF 120
Query: 118 SGKAK 122
+K
Sbjct: 121 EDFSK 125
>sp|Q82PC4|CAAL2_STRAW Carboxylate-amine ligase SAV_999 OS=Streptomyces avermitilis
(strain ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804
/ NRRL 8165 / MA-4680) GN=SAV_999 PE=3 SV=1
Length = 366
Score = 33.5 bits (75), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 9 DAILFVFFVAIALAVPLIDAQACLPVNFYPPFLVDLKTWYTDEYG 53
DA++F V +A + DA+A +PV PP L+ W+ +G
Sbjct: 243 DAVMFAGIVRALVATAINDAKAGVPVPSCPPELLQGANWHAARHG 287
>sp|P27475|YOPT_YEREN Cysteine protease YopT OS=Yersinia enterocolitica GN=yopT PE=3 SV=2
Length = 322
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 46 TWYTDEYGDYLFTEKPHF---FVGIMWLQLLFQWPLALVNIFAILT 88
T++ +G++ F++K F F W ++ +PL + F++LT
Sbjct: 271 TFFDPNFGEFHFSDKEKFRKWFTNSFWENSMYHYPLGVGQRFSVLT 316
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.329 0.142 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,988,711
Number of Sequences: 539616
Number of extensions: 2272788
Number of successful extensions: 5865
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 5852
Number of HSP's gapped (non-prelim): 17
length of query: 168
length of database: 191,569,459
effective HSP length: 109
effective length of query: 59
effective length of database: 132,751,315
effective search space: 7832327585
effective search space used: 7832327585
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (26.6 bits)