Query 030942
Match_columns 168
No_of_seqs 108 out of 186
Neff 5.9
Searched_HMMs 13730
Date Mon Mar 25 10:39:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030942.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030942hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jb0i_ f.23.17.1 (I:) Subunit 33.6 8 0.00058 21.3 1.2 14 126-139 6-19 (38)
2 d1no1a_ a.179.1.1 (A:) Repliso 8.3 97 0.007 18.1 2.0 23 26-48 11-34 (67)
3 d2es9a1 a.247.1.1 (A:11-107) H 7.5 2.7E+02 0.02 17.4 4.3 38 35-72 55-93 (97)
4 d2e9xb1 a.278.1.2 (B:62-173) D 4.9 3.6E+02 0.026 17.0 3.8 26 33-60 2-27 (112)
5 d2tssa1 b.40.2.2 (A:1-93) Toxi 4.8 1.3E+02 0.0096 18.5 1.3 17 40-57 5-21 (93)
6 d1f74a_ c.1.10.1 (A:) N-acetyl 4.3 3E+02 0.022 19.6 3.3 53 24-76 98-154 (293)
7 d1p90a_ c.55.5.2 (A:) NafY cor 3.5 1E+02 0.0075 19.6 -0.1 10 56-65 111-120 (123)
8 d2axti1 f.23.37.1 (I:1-35) Pho 3.2 3.9E+02 0.028 13.7 3.2 25 64-91 4-28 (35)
9 d1uhua_ a.61.1.6 (A:) Product 2.9 85 0.0062 20.7 -1.1 10 56-65 90-99 (105)
10 d2fyuk1 f.23.15.1 (K:1-53) Sub 2.8 3E+02 0.022 15.6 1.5 32 91-132 16-47 (53)
No 1
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=33.63 E-value=8 Score=21.29 Aligned_cols=14 Identities=14% Similarity=0.451 Sum_probs=11.3
Q ss_pred hhhhchHHHHHHHH
Q 030942 126 ITIYCPFMGLAVLA 139 (168)
Q Consensus 126 ~~~Y~Py~~iP~~m 139 (168)
.+.|+|+.+||.+-
T Consensus 6 AAsyLPwI~iPvv~ 19 (38)
T d1jb0i_ 6 AASFLPWIFIPVVC 19 (38)
T ss_dssp TTTTHHHHHHHHHH
T ss_pred HHHhcchhHHHHHH
Confidence 36799999999864
No 2
>d1no1a_ a.179.1.1 (A:) Replisome organizer (g39p helicase loader/inhibitor protein) {Bacteriophage Spp1 [TaxId: 10724]}
Probab=8.31 E-value=97 Score=18.12 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=18.1
Q ss_pred HhccccCCCCCChhHHHH-HHHHH
Q 030942 26 IDAQACLPVNFYPPFLVD-LKTWY 48 (168)
Q Consensus 26 iD~q~~~P~~~~p~~l~~-l~~~y 48 (168)
=..+.+||...+|+-+++ .+.||
T Consensus 11 kavsefypgrfqpddlkgtvkawh 34 (67)
T d1no1a_ 11 KAVSEFYPGRFQPDDLKGTVKAWH 34 (67)
T ss_dssp HHHHHHSTTTCCCTTHHHHHHHHH
T ss_pred HHHHHHCCCCCCccccchHHHHHH
Confidence 344678999999998887 67787
No 3
>d2es9a1 a.247.1.1 (A:11-107) Hypothetical protein YoaC {Salmonella typhimurium [TaxId: 90371]}
Probab=7.53 E-value=2.7e+02 Score=17.40 Aligned_cols=38 Identities=24% Similarity=0.506 Sum_probs=29.8
Q ss_pred CCChhHHHHHHHHHH-HhcCCccccCCchhHHHHHHHHH
Q 030942 35 NFYPPFLVDLKTWYT-DEYGDYLFTEKPHFFVGIMWLQL 72 (168)
Q Consensus 35 ~~~p~~l~~l~~~yi-~~~~Dpl~~~~P~Wf~~fv~~El 72 (168)
.|-|.|.+++..|-- -+++.-.+..+|.+|..++-=|+
T Consensus 55 gWn~gFT~K~~gWA~k~~sGerivIKnPEyFstYM~eeL 93 (97)
T d2es9a1 55 GWNPEFTKKVAGWAEKVASGNRILIKNPEYFSTYMQEQL 93 (97)
T ss_dssp TCCHHHHHHHHHHHHHHHTTCCCCCSSGGGSCHHHHHHH
T ss_pred cCChhHHHHHHHHHHHhccCCeeeecChHHHHHHHHHHH
Confidence 577889999999942 36788888889999988876554
No 4
>d2e9xb1 a.278.1.2 (B:62-173) DNA replication complex GINS protein PSF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.92 E-value=3.6e+02 Score=16.98 Aligned_cols=26 Identities=8% Similarity=0.014 Sum_probs=15.6
Q ss_pred CCCCChhHHHHHHHHHHHhcCCccccCC
Q 030942 33 PVNFYPPFLVDLKTWYTDEYGDYLFTEK 60 (168)
Q Consensus 33 P~~~~p~~l~~l~~~yi~~~~Dpl~~~~ 60 (168)
|.|+..+.|+++++- ++.+|.+..-|
T Consensus 2 P~Wl~ve~L~~~~~~--E~~~~~f~~lP 27 (112)
T d2e9xb1 2 PEWMDVEKLEKMRDH--ERKEETFTPMP 27 (112)
T ss_dssp CTTCCHHHHHHHHHH--HHHCSSCCCCS
T ss_pred CccccHHHHHHHHHH--HhcccccccCC
Confidence 455666778887775 34456654333
No 5
>d2tssa1 b.40.2.2 (A:1-93) Toxic shock syndrome toxin-1 (TSST-1) {Staphylococcus aureus [TaxId: 1280]}
Probab=4.82 E-value=1.3e+02 Score=18.50 Aligned_cols=17 Identities=29% Similarity=0.517 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhcCCccc
Q 030942 40 FLVDLKTWYTDEYGDYLF 57 (168)
Q Consensus 40 ~l~~l~~~yi~~~~Dpl~ 57 (168)
-.+++++|| +...|-+-
T Consensus 5 nikdlldwy-ssgsdtft 21 (93)
T d2tssa1 5 NIKDLLDWY-SSGSDTFT 21 (93)
T ss_dssp HHHHHHHHH-HSCCEEEE
T ss_pred cHHHHHHHh-hcCCcccc
Confidence 467889999 45555543
No 6
>d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]}
Probab=4.27 E-value=3e+02 Score=19.55 Aligned_cols=53 Identities=15% Similarity=0.180 Sum_probs=34.4
Q ss_pred HHHhccccCCCCCChhHHHHHHHHH---HHhcCCcccc-CCchhHHHHHHHHHHHHH
Q 030942 24 PLIDAQACLPVNFYPPFLVDLKTWY---TDEYGDYLFT-EKPHFFVGIMWLQLLFQW 76 (168)
Q Consensus 24 lliD~q~~~P~~~~p~~l~~l~~~y---i~~~~Dpl~~-~~P~Wf~~fv~~El~fql 76 (168)
.=.|...+.|+.+++..-.++.++| .+..+.|++. +.|.+-+.-+-.|++-+|
T Consensus 98 ~Gad~i~~~pP~~~~~s~~~~~~~~~~v~~~~~~pi~iYn~P~~tg~~l~~~~l~~L 154 (293)
T d1f74a_ 98 LGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGSNMIVYSIPFLTGVNMGIEQFGEL 154 (293)
T ss_dssp HTCSEEECCCCCSSCCCHHHHHHHHHHHHHHHCCCEEEECCSSCSCHHHHHHHHHHH
T ss_pred cCCCEeeccCccccccchHHHHHHHhcccccCCceEEEEeeccceeccccchhhhhh
Confidence 3457777888888765566677775 3456667765 557666555666666664
No 7
>d1p90a_ c.55.5.2 (A:) NafY core domain {Azotobacter vinelandii [TaxId: 354]}
Probab=3.53 E-value=1e+02 Score=19.61 Aligned_cols=10 Identities=10% Similarity=0.375 Sum_probs=7.2
Q ss_pred cccCCchhHH
Q 030942 56 LFTEKPHFFV 65 (168)
Q Consensus 56 l~~~~P~Wf~ 65 (168)
+-.++|+|++
T Consensus 111 l~~~~p~~l~ 120 (123)
T d1p90a_ 111 MAGSPPPWLA 120 (123)
T ss_dssp HHSCCCHHHH
T ss_pred hCCCCChHHh
Confidence 3456899986
No 8
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.15 E-value=3.9e+02 Score=13.75 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 030942 64 FVGIMWLQLLFQWPLALVNIFAILTSKS 91 (168)
Q Consensus 64 f~~fv~~El~fqlP~f~~~~y~l~~~~~ 91 (168)
++.+|+.-..|..-+|+ .|++.+++
T Consensus 4 LKi~Vy~vV~fFv~lFi---FGFLSnDP 28 (35)
T d2axti1 4 LKITVYIVVTFFVLLFV---FGFLSGDP 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHTTCT
T ss_pred EEEehhhHHHHHHHHHH---HhhccCCC
Confidence 45666666666555444 44566553
No 9
>d1uhua_ a.61.1.6 (A:) Product of RIKEN cDNA 3110009e22 {Unclassified, murine endogenous retrovirus [TaxId: 12908]}
Probab=2.94 E-value=85 Score=20.66 Aligned_cols=10 Identities=20% Similarity=0.484 Sum_probs=7.0
Q ss_pred cccCCchhHH
Q 030942 56 LFTEKPHFFV 65 (168)
Q Consensus 56 l~~~~P~Wf~ 65 (168)
|..++|+|.|
T Consensus 90 La~~PPpw~k 99 (105)
T d1uhua_ 90 LVQNSPPWIK 99 (105)
T ss_dssp HHHTCCTTTS
T ss_pred HHHCCChhhh
Confidence 3457888876
No 10
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.78 E-value=3e+02 Score=15.60 Aligned_cols=32 Identities=19% Similarity=0.437 Sum_probs=17.3
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhHhhhhchH
Q 030942 91 SWLNTTCLIYGSSVLTSMAAVLAELMGSGKAKDELITIYCPF 132 (168)
Q Consensus 91 ~~~~~~~liYg~~~~~Tt~~cl~ei~~s~~~~~~L~~~Y~Py 132 (168)
.|++ .+..||....+..+-. --+++..-|+||
T Consensus 16 ~wip-s~~~~G~a~gl~lvy~---------TDWklil~yvPy 47 (53)
T d2fyuk1 16 NWVP-TASLWGAVGAVGLVWA---------TDWRLILDWVPY 47 (53)
T ss_dssp HHHH-HHHHHHHHHHHHHHHH---------HTCHHHHTSSSS
T ss_pred HHhh-hhhhhhhhhheeeeee---------ehHHHHHhhhhh
Confidence 3444 3445565554443321 446777778876
Done!