BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030943
(168 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3I4C|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh)
Double Mutant (W95l,N249y)
pdb|3I4C|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh)
Double Mutant (W95l,N249y)
pdb|3I4C|C Chain C, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh)
Double Mutant (W95l,N249y)
pdb|3I4C|D Chain D, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh)
Double Mutant (W95l,N249y)
pdb|3I4C|E Chain E, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh)
Double Mutant (W95l,N249y)
pdb|3I4C|H Chain H, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh)
Double Mutant (W95l,N249y)
Length = 347
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
Query: 77 GNLSLDLSEGSKWNISRSG-FCGMRSKKFDGFIDLDSYDTIAM-KLKGDGRCYISTIYTE 134
GNL + G K ++ G + D + D +A+ L+G+G CY I E
Sbjct: 50 GNLRIVEDLGVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPLQGEGNCYYCRIGEE 109
Query: 135 NWVNSP---GQQEDNSWQSFVFVPKDNWYIAKMQRW 167
+ +SP G D ++ +V VP Y+ K++R
Sbjct: 110 HLCDSPRWLGINFDGAYAEYVIVPHYK-YMYKLRRL 144
>pdb|2EER|A Chain A, Structural Study Of Project Id St2577 From Sulfolobus
Tokodaii Strain7
pdb|2EER|B Chain B, Structural Study Of Project Id St2577 From Sulfolobus
Tokodaii Strain7
Length = 347
Score = 30.4 bits (67), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
Query: 77 GNLSLDLSEGSKWNISRSGFCGMRSKKF-DGFIDLDSYDTIAMKL-KGDGRCYISTIYTE 134
GNL + G K ++ R ++ D + D +A+ +G+G CY I E
Sbjct: 50 GNLRIVEDLGVKLPVTLGHEIAGRIEEVGDEVVGYSKGDLVAVNPWEGEGNCYYCRIGEE 109
Query: 135 NWVNSP---GQQEDNSWQSFVFVPKDNWYIAKMQRW 167
+ +SP G D ++ +V VP Y+ K++R
Sbjct: 110 HLCDSPRWLGINYDGAYAEYVLVPHYK-YLYKLRRL 144
>pdb|1NTO|A Chain A, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon
Sulfolobus Solfataricus-Monoclinic Crystal Form
pdb|1NTO|B Chain B, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon
Sulfolobus Solfataricus-Monoclinic Crystal Form
pdb|1NTO|C Chain C, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon
Sulfolobus Solfataricus-Monoclinic Crystal Form
pdb|1NTO|D Chain D, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon
Sulfolobus Solfataricus-Monoclinic Crystal Form
pdb|1NTO|E Chain E, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon
Sulfolobus Solfataricus-Monoclinic Crystal Form
pdb|1NTO|H Chain H, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon
Sulfolobus Solfataricus-Monoclinic Crystal Form
pdb|1NVG|A Chain A, N249y Mutant Of The Alcohol Dehydrogenase From The
Archaeon Sulfolobus Solfataricus-tetragonal Crystal Form
Length = 347
Score = 29.6 bits (65), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
Query: 77 GNLSLDLSEGSKWNISRSG-FCGMRSKKFDGFIDLDSYDTIAMKL-KGDGRCYISTIYTE 134
GNL + G K ++ G + D + D +A+ +G+G CY I E
Sbjct: 50 GNLRIVEDLGVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEE 109
Query: 135 NWVNSP---GQQEDNSWQSFVFVPKDNWYIAKMQRW 167
+ +SP G D ++ +V VP Y+ K++R
Sbjct: 110 HLCDSPRWLGINFDGAYAEYVIVPHYK-YMYKLRRL 144
>pdb|1R37|A Chain A, Alcohol Dehydrogenase From Sulfolobus Solfataricus
Complexed With Nad(H) And 2-Ethoxyethanol
pdb|1R37|B Chain B, Alcohol Dehydrogenase From Sulfolobus Solfataricus
Complexed With Nad(H) And 2-Ethoxyethanol
Length = 347
Score = 29.6 bits (65), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
Query: 77 GNLSLDLSEGSKWNISRSG-FCGMRSKKFDGFIDLDSYDTIAMKL-KGDGRCYISTIYTE 134
GNL + G K ++ G + D + D +A+ +G+G CY I E
Sbjct: 50 GNLRIVEDLGVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEE 109
Query: 135 NWVNSP---GQQEDNSWQSFVFVPKDNWYIAKMQRW 167
+ +SP G D ++ +V VP Y+ K++R
Sbjct: 110 HLCDSPRWLGINFDGAYAEYVIVPHYK-YMYKLRRL 144
>pdb|1JVB|A Chain A, Alcohol Dehydrogenase From The Archaeon Sulfolobus
Solfataricus
Length = 347
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 77 GNLSLDLSEGSKWNISRSG-FCGMRSKKFDGFIDLDSYDTIAMKL-KGDGRCYISTIYTE 134
GNL + G K ++ G + D + D +A+ +G+G CY I E
Sbjct: 50 GNLRIVEDLGVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEE 109
Query: 135 NWVNSP---GQQEDNSWQSFVFVP 155
+ +SP G D ++ +V VP
Sbjct: 110 HLCDSPRWLGINFDGAYAEYVIVP 133
>pdb|3IDE|A Chain A, Structure Of Ipnv Subviral Particle
pdb|3IDE|B Chain B, Structure Of Ipnv Subviral Particle
pdb|3IDE|C Chain C, Structure Of Ipnv Subviral Particle
pdb|3IDE|D Chain D, Structure Of Ipnv Subviral Particle
pdb|3IDE|E Chain E, Structure Of Ipnv Subviral Particle
Length = 442
Score = 26.2 bits (56), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 58 SSASLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGF 96
SS +LE++ESG+G+ F G + +WN +++G
Sbjct: 39 SSYNLEVSESGSGVLVCFPGAPGSRIGAHYRWNANQTGL 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,701,995
Number of Sequences: 62578
Number of extensions: 240335
Number of successful extensions: 520
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 514
Number of HSP's gapped (non-prelim): 11
length of query: 168
length of database: 14,973,337
effective HSP length: 92
effective length of query: 76
effective length of database: 9,216,161
effective search space: 700428236
effective search space used: 700428236
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)