BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030943
(168 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LQI7|CIA30_ARATH Probable complex I intermediate-associated protein 30
OS=Arabidopsis thaliana GN=At1g17350 PE=1 SV=2
Length = 227
Score = 281 bits (719), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 132/170 (77%), Positives = 153/170 (90%), Gaps = 2/170 (1%)
Query: 1 MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSA 60
MSRFR L QAS+NATK+ALTWN+EE +PP+E++IF F+SKE+LKKWHLYSDSEYGGLSSA
Sbjct: 1 MSRFRSLLQASVNATKKALTWNVEEWVPPAEKHIFKFHSKEDLKKWHLYSDSEYGGLSSA 60
Query: 61 SLEITESGNGMN--GIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAM 118
SLEI + G+G + G+FSGNLS+DLSEGSKWNISRSGFCGMRSKKFDGFIDLD YD IA+
Sbjct: 61 SLEIPDKGDGSDCTGVFSGNLSVDLSEGSKWNISRSGFCGMRSKKFDGFIDLDGYDAIAL 120
Query: 119 KLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKMQRWR 168
+++GDGRCYISTIYTENWVNSPGQ EDNSWQ+FVF PKD+WY AK+ R
Sbjct: 121 RIRGDGRCYISTIYTENWVNSPGQSEDNSWQAFVFAPKDSWYTAKIPLAR 170
>sp|Q9VAI1|CIA30_DROME Probable complex I intermediate-associated protein 30,
mitochondrial OS=Drosophila melanogaster GN=CG7598 PE=2
SV=1
Length = 296
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 68/118 (57%), Gaps = 12/118 (10%)
Query: 28 PPSERYIFNFNSKEELKKWHLYSDSEYG-GLSSASLEITESGNGMNGIFSGNLSLDLSEG 86
P +F+F + + L KW + +D+++G G S+A+LE++ +G G+ F G ++ D ++
Sbjct: 85 PGETDVVFDFKAPDVLDKWTVTTDADHGEGKSTATLELSAAGAGL---FHGQVNSDHTKD 141
Query: 87 SKWNISRSGFCGMRSKKF------DGFIDLDSYDTIAMKLKGDGRCYISTIYTENWVN 138
I R+G+ +R+K+ + D Y+ + MK++GDGR Y+ ++TE + +
Sbjct: 142 G--IIKRTGYANIRTKRVRKSFKRETTYDWTQYNMLVMKVRGDGRSYLINLHTEGYFD 197
>sp|O42636|CIA30_NEUCR Complex I intermediate-associated protein 30, mitochondrial
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=cia30 PE=1 SV=1
Length = 278
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 77/193 (39%), Gaps = 47/193 (24%)
Query: 4 FRGLWQASLNATKR-----ALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLS 58
F+ W SL+ R + N+ P E I NF + E + L SD++ GG S
Sbjct: 9 FKSFWSRSLDELSRLTNIVVKSENIRGATGPRE--IHNFQTPESVADCKLLSDADVGGSS 66
Query: 59 SASLEITESGNGMNGI--------------------FSGNLSLDLSEGSKWNISRSGFCG 98
+A L+ N + + F G +SL+L + ISR+G+ G
Sbjct: 67 TAHLDWVPPPNAIPTVTAGDGSDRKPYTPIPGSYARFHGTISLELPTDRR-EISRTGYAG 125
Query: 99 MRSKKFDGFI------DLDSYDTIAMKLKGDGRCYISTIYTEN-----------WVNSPG 141
R+ I D+D Y +AM++K D R Y + TE+ +V PG
Sbjct: 126 FRTLDRPPTIFGRGLWDIDPYAYLAMRVKTDARSYFVNVRTESVVPLDLHQHRLFVKKPG 185
Query: 142 QQEDN--SWQSFV 152
Q E W FV
Sbjct: 186 QWETVLIKWNDFV 198
>sp|Q0MQ83|CIA30_GORGO Complex I intermediate-associated protein 30, mitochondrial
OS=Gorilla gorilla gorilla GN=NDUFAF1 PE=2 SV=1
Length = 327
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 68/137 (49%), Gaps = 10/137 (7%)
Query: 1 MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSA 60
M FR L ++ + +L E++ + ++ F KE+L KW + SD GG S
Sbjct: 91 MYHFRHLKDEIVDHWRGPEGHSLHEVLLEQAKVVWQFRGKEDLDKWTVTSDKTIGGRSEV 150
Query: 61 SLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFI------DLDSYD 114
L++ + N + + G LS + + + +RSG+C M+S+ G D ++
Sbjct: 151 FLKMGK--NNQSALLYGTLSSEAPQDGE--STRSGYCAMKSRIPRGAFERKMSYDWSQFN 206
Query: 115 TIAMKLKGDGRCYISTI 131
T+ ++++GDGR ++ I
Sbjct: 207 TLYLRVRGDGRPWMVNI 223
>sp|Q0MQ84|CIA30_PANTR Complex I intermediate-associated protein 30, mitochondrial OS=Pan
troglodytes GN=NDUFAF1 PE=2 SV=1
Length = 327
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 10/137 (7%)
Query: 1 MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSA 60
M FR L ++ + L E++ + ++ F KE+L KW + SD GG S
Sbjct: 91 MYHFRHLKDEIVDHWRGPEGHPLHEVLLEQAKVVWQFRGKEDLDKWTVTSDKTIGGRSEV 150
Query: 61 SLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFI------DLDSYD 114
L++ + N + + G LS + + + +RSG+C M S+ G D ++
Sbjct: 151 FLKMGK--NNQSALLYGTLSSEAPQDGE--STRSGYCAMISRIPRGAFERKMSYDWSQFN 206
Query: 115 TIAMKLKGDGRCYISTI 131
T+ ++++GDGR ++ I
Sbjct: 207 TLYLRVRGDGRPWMVNI 223
>sp|Q9CWX2|CIA30_MOUSE Complex I intermediate-associated protein 30, mitochondrial OS=Mus
musculus GN=Ndufaf1 PE=2 SV=2
Length = 328
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 12/116 (10%)
Query: 23 LEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLD 82
L+E++ R ++ F KE+L KW + SD GG S L++ S N + + G LS
Sbjct: 114 LQEVIMEQARVVWQFREKEDLDKWIVTSDKTIGGRSEIFLKM--SKNNRSALLYGTLS-- 169
Query: 83 LSEGSKWNISR-SGFCGMRSKKFDGFI------DLDSYDTIAMKLKGDGRCYISTI 131
SE + SR SG+C M S+ G D ++T+ ++++GDGR ++ I
Sbjct: 170 -SEPPQDGDSRQSGYCAMISRIPRGAFERKLSYDWSQFNTLYLRVRGDGRPWMVNI 224
>sp|Q9Y375|CIA30_HUMAN Complex I intermediate-associated protein 30, mitochondrial OS=Homo
sapiens GN=NDUFAF1 PE=1 SV=2
Length = 327
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 10/115 (8%)
Query: 23 LEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLD 82
L E++ + ++ F KE+L KW + SD GG S L++ + N + + G LS +
Sbjct: 113 LHEVLLEQAKVVWQFRGKEDLDKWTVTSDKTIGGRSEVFLKMGK--NNQSALLYGTLSSE 170
Query: 83 LSEGSKWNISRSGFCGMRSKKFDGFI------DLDSYDTIAMKLKGDGRCYISTI 131
+ + +RSG+C M S+ G D ++T+ ++++GDGR ++ I
Sbjct: 171 APQDGE--STRSGYCAMISRIPRGAFERKMSYDWSQFNTLYLRVRGDGRPWMVNI 223
>sp|Q0MQ82|CIA30_PONPY Complex I intermediate-associated protein 30, mitochondrial
OS=Pongo pygmaeus GN=NDUFAF1 PE=2 SV=1
Length = 327
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 60/115 (52%), Gaps = 10/115 (8%)
Query: 23 LEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLD 82
L E++ + ++ F KE+L KW + SD GG S L++ + N + + G LS +
Sbjct: 113 LREVLLEQAKVVWQFRGKEDLDKWTVTSDKTIGGRSEVFLKMGK--NNQSALLYGTLSSE 170
Query: 83 LSEGSKWNISRSGFCGMRSK----KFDGFIDLD--SYDTIAMKLKGDGRCYISTI 131
+ +RSG+C M S+ F+ + D ++T+ ++++GDGR ++ I
Sbjct: 171 APHDGES--TRSGYCAMISRIPRGAFERKVSYDWSQFNTLYLRVRGDGRPWMVNI 223
>sp|Q18726|CIA30_CAEEL Probable complex I intermediate-associated protein 30,
mitochondrial OS=Caenorhabditis elegans GN=C50B8.3 PE=3
SV=1
Length = 340
Score = 36.6 bits (83), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 54/103 (52%), Gaps = 12/103 (11%)
Query: 32 RYIFNFNSKEELKKWHLYSDSEYG-GLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWN 90
R + F+++E+L W + DS++ G S+ SL ++ G +FSGN+S + + +
Sbjct: 134 RVDYRFDTQEKLDLWKIGCDSDWKEGFSTCSLVNSDRG---TAVFSGNISTKVLKDGR-- 188
Query: 91 ISRSGFCGMRSKKFDGFIDLD------SYDTIAMKLKGDGRCY 127
+ R+G+ M+ + F ++ + +K++GDGR Y
Sbjct: 189 VERAGWASMKLEDRKAFNRKKFLSKWRNFSHLLLKVRGDGRSY 231
>sp|B5VMS9|SDC25_YEAS6 Guanine nucleotide exchange factor SDC25 OS=Saccharomyces cerevisiae
(strain AWRI1631) GN=SDC25 PE=3 SV=1
Length = 1265
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 3 RFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASL 62
R WQA + T R L +L++LM P + +I N + ELK H + G+ + L
Sbjct: 1059 RLEKTWQAVIPQT-RDLLQSLDKLMDPKKNFI---NYRSELKSLHSAPCVPFFGVYLSDL 1114
Query: 63 EITESGN 69
T+SGN
Sbjct: 1115 TFTDSGN 1121
>sp|A7A0P0|SDC25_YEAS7 Guanine nucleotide exchange factor SDC25 OS=Saccharomyces cerevisiae
(strain YJM789) GN=SDC25 PE=3 SV=2
Length = 1252
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 3 RFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASL 62
R WQA + T R L +L++LM P + +I N + ELK H + G+ + L
Sbjct: 1059 RLEKTWQAVIPQT-RDLLQSLDKLMDPKKNFI---NYRSELKSLHSAPCVPFFGVYLSDL 1114
Query: 63 EITESGN 69
T+SGN
Sbjct: 1115 TFTDSGN 1121
>sp|B3LTF3|SDC25_YEAS1 Guanine nucleotide exchange factor SDC25 OS=Saccharomyces cerevisiae
(strain RM11-1a) GN=SDC25 PE=3 SV=1
Length = 1252
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 3 RFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASL 62
R WQA + T R L +L++LM P + +I N + ELK H + G+ + L
Sbjct: 1059 RLEKTWQAVIPQT-RDLLQSLDKLMDPKKNFI---NYRSELKSLHSAPCVPFFGVYLSDL 1114
Query: 63 EITESGN 69
T+SGN
Sbjct: 1115 TFTDSGN 1121
>sp|Q61FQ3|CIA30_CAEBR Probable complex I intermediate-associated protein 30,
mitochondrial OS=Caenorhabditis briggsae GN=CBG11538
PE=3 SV=1
Length = 340
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 55/103 (53%), Gaps = 12/103 (11%)
Query: 32 RYIFNFNSKEELKKWHLYSDSEYG-GLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWN 90
R + F++ E+L W + DS++ G S+ SL ++ G +FSGN+S + + +
Sbjct: 134 RVEYKFDTSEKLDLWKIGCDSDWKEGFSTCSLVNSDRGTA---VFSGNISTRVLKDGR-- 188
Query: 91 ISRSGFCGMR---SKKFDGFIDLD---SYDTIAMKLKGDGRCY 127
+ R+G+ M+ K F+ L ++ + +K++GDGR Y
Sbjct: 189 VERAGWASMKLEDRKTFNRKKFLSKWRNFSHLLLKVRGDGRSY 231
>sp|P0CF32|SDC25_YEASX Guanine nucleotide exchange factor SDC25 OS=Saccharomyces cerevisiae
GN=SDC25 PE=1 SV=1
Length = 1253
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 3 RFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASL 62
R WQA + T R L +L +LM P + +I N + ELK H + G+ + L
Sbjct: 1060 RLEKTWQAVIPQT-RDLLQSLNKLMDPKKNFI---NYRNELKSLHSAPCVPFFGVYLSDL 1115
Query: 63 EITESGN 69
T+SGN
Sbjct: 1116 TFTDSGN 1122
>sp|P0CF34|YL017_YEAST Putative guanine nucleotide exchange factor YLL017W
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=YLL017W PE=5 SV=1
Length = 1048
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 3 RFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASL 62
R WQA + T R L +L +LM P + +I N + ELK H + G+ + L
Sbjct: 855 RLEKTWQAVIPQT-RDLLQSLNKLMDPKKNFI---NYRNELKSLHSAPCVPFFGVYLSDL 910
Query: 63 EITESGN 69
T+SGN
Sbjct: 911 TFTDSGN 917
>sp|C8ZCV7|SDC25_YEAS8 Guanine nucleotide exchange factor SDC25 OS=Saccharomyces cerevisiae
(strain Lalvin EC1118 / Prise de mousse) GN=SDC25 PE=3
SV=1
Length = 1252
Score = 33.9 bits (76), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 3 RFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASL 62
R WQA + T R L +L++LM P + +I + + ELK H + G+ + L
Sbjct: 1059 RLEKTWQAVIPQT-RDLLQSLDKLMDPKKNFI---DYRSELKSLHSAPCVPFFGVYLSDL 1114
Query: 63 EITESGN 69
T+SGN
Sbjct: 1115 TFTDSGN 1121
>sp|Q6ZRI0|OTOG_HUMAN Otogelin OS=Homo sapiens GN=OTOG PE=2 SV=3
Length = 2925
Score = 33.9 bits (76), Expect = 0.55, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 9 QASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITES- 67
Q +++ R +T +L+ + PP RY F + SD + L S+ L I E+
Sbjct: 2179 QVTIDRFNRKVTVDLQPVWPPVSRYGFRIEDTGHMYMILTPSDIQIQWLHSSGLMIVEAS 2238
Query: 68 ------GNGMNGIFSGNLSLDLS 84
G+G+ GI G+ + DL+
Sbjct: 2239 KTSKAQGHGLCGICDGDAANDLT 2261
>sp|A6LVY2|Y2352_CLOB8 UPF0210 protein Cbei_2352 OS=Clostridium beijerinckii (strain ATCC
51743 / NCIMB 8052) GN=Cbei_2352 PE=3 SV=1
Length = 451
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 28/46 (60%)
Query: 41 EELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEG 86
+ +KK + + S GGLS A + ++E ++ + SG+L+L+ EG
Sbjct: 311 DAVKKGGVMACSHVGGLSGAFIPVSEDAGMIDAVISGSLNLEKLEG 356
>sp|B2VEL5|Y1831_ERWT9 UPF0061 protein ETA_18310 OS=Erwinia tasmaniensis (strain DSM 17950
/ Et1/99) GN=ETA_18310 PE=3 SV=1
Length = 479
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 60 ASLEITESGNGMNGIFSGNLSLDLSEGSKW-----NISRSGFCGMRSKKFDGFIDLDSYD 114
A L + N I +G LSL EGS + +S+S +RS D FID D++D
Sbjct: 330 AKLGLLTPAKDDNNILTGLLSLMTKEGSDYTRTFRQLSQSEQLQLRSPMRDEFIDRDAFD 389
Query: 115 T 115
+
Sbjct: 390 S 390
>sp|B2WCB2|MTNB_PYRTR Methylthioribulose-1-phosphate dehydratase OS=Pyrenophora
tritici-repentis (strain Pt-1C-BFP) GN=mde1 PE=3 SV=1
Length = 232
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 24 EELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLE 63
+ELM P++ ++ +FNSKE L+K + S L A+ E
Sbjct: 61 KELMKPTDMFVMDFNSKEYLRKPQVLKPSACTPLFLAAFE 100
>sp|Q3ATN3|SYA_CHLCH Alanine--tRNA ligase OS=Chlorobium chlorochromatii (strain CaD3)
GN=alaS PE=3 SV=1
Length = 886
Score = 31.6 bits (70), Expect = 2.5, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 85 EGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAMKLKGDGRCYISTIYTENWVNSPGQQE 144
+G+KW F +R+ +F G+ L TI +G+G+ + T + S GQ
Sbjct: 445 DGAKWQ----WFSDVRASQFVGYDHLVHSATITGIRQGNGKLLLVLDATPFYAESGGQTG 500
Query: 145 DNSW 148
DN W
Sbjct: 501 DNGW 504
>sp|A8G7J4|PYRG_PROM2 CTP synthase OS=Prochlorococcus marinus (strain MIT 9215) GN=pyrG
PE=3 SV=1
Length = 536
Score = 31.2 bits (69), Expect = 3.2, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 83 LSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAMKLKGDGRCYISTIYTE 134
++EG K +S GFCG+ K +D DS ++ + LK +G C + Y E
Sbjct: 217 INEGLKKKLS--GFCGVNIKSVIEALDADSIYSVPLALKKEGLCKETLKYLE 266
>sp|B2V307|Y1879_CLOBA UPF0210 protein CLH_1879 OS=Clostridium botulinum (strain Alaska
E43 / Type E3) GN=CLH_1879 PE=3 SV=1
Length = 451
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 41 EELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEG 86
+ +KK + + S GGLS A + ++E + + +G+L+L+ EG
Sbjct: 311 DAVKKGGVMACSHVGGLSGAFIPVSEDAGMIEAVINGSLNLEKLEG 356
>sp|B2TL32|Y1718_CLOBB UPF0210 protein CLL_A1718 OS=Clostridium botulinum (strain Eklund
17B / Type B) GN=CLL_A1718 PE=3 SV=1
Length = 451
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 41 EELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEG 86
+ +KK + + S GGLS A + ++E + + G+L+L+ EG
Sbjct: 311 DAVKKGGVMACSHVGGLSGAFIPVSEDAGMIEAVIKGSLNLEKLEG 356
>sp|A2C5F9|PYRG_PROM1 CTP synthase OS=Prochlorococcus marinus (strain NATL1A) GN=pyrG
PE=3 SV=1
Length = 555
Score = 29.6 bits (65), Expect = 8.7, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 95 GFCGMRSKKFDGFIDLDSYDTIAMKLKGDGRC 126
GFCG+ S+ +D DS ++ + LK +G C
Sbjct: 227 GFCGVNSEAVIASLDADSIYSVPLALKDEGLC 258
>sp|A9BDD9|PYRG_PROM4 CTP synthase OS=Prochlorococcus marinus (strain MIT 9211) GN=pyrG
PE=3 SV=1
Length = 555
Score = 29.6 bits (65), Expect = 8.9, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 94 SGFCGMRSKKFDGFIDLDSYDTIAMKLKGDGRC 126
SGFCG+ ++ +D DS ++ + LK +G C
Sbjct: 226 SGFCGVNNEAVIPALDADSIYSVPLALKAEGLC 258
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,743,479
Number of Sequences: 539616
Number of extensions: 2787710
Number of successful extensions: 5842
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 5816
Number of HSP's gapped (non-prelim): 33
length of query: 168
length of database: 191,569,459
effective HSP length: 109
effective length of query: 59
effective length of database: 132,751,315
effective search space: 7832327585
effective search space used: 7832327585
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)