BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030945
(168 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9AT35|RL23A_DAUCA 60S ribosomal protein L23a OS=Daucus carota GN=RPL23A PE=2 SV=1
Length = 154
Score = 239 bits (609), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 136/154 (88%), Positives = 141/154 (91%), Gaps = 2/154 (1%)
Query: 17 MAPPKGE-TKKADPKVQALKTAKAVKSGRT-FKKAKKIRTSVTFHRPKTLKKDRNPKYPR 74
M+P K + TKK+D K QALKTAKAVKSG T FKK KKIRTSVTFHRP+TL KDRNPKYPR
Sbjct: 1 MSPAKVDVTKKSDAKAQALKTAKAVKSGTTKFKKVKKIRTSVTFHRPRTLTKDRNPKYPR 60
Query: 75 ISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAK 134
ISA PRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KKKIKDAVKKMYDIQ K
Sbjct: 61 ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTK 120
Query: 135 KVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 168
KVNTLIRPDGTKKAYVRLTPD DALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
>sp|O22644|RL23A_FRIAG 60S ribosomal protein L23A OS=Fritillaria agrestis GN=RPL23A PE=2
SV=1
Length = 154
Score = 238 bits (608), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 137/154 (88%), Positives = 139/154 (90%), Gaps = 2/154 (1%)
Query: 17 MAPPKGETKKADPKVQALKTAKAVKSGRTF--KKAKKIRTSVTFHRPKTLKKDRNPKYPR 74
MAPP KK D K QALK AKAVKSG + KKAKKIRTSVTFHRPKTLKKDRNPKYPR
Sbjct: 1 MAPPAKVAKKPDGKAQALKVAKAVKSGVSTLQKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
Query: 75 ISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAK 134
ISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQ K
Sbjct: 61 ISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTK 120
Query: 135 KVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 168
KVNTLIRPDGTKKAYVRLTPD DALD+ANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDIANKIGII 154
>sp|Q07761|RL23A_TOBAC 60S ribosomal protein L23a OS=Nicotiana tabacum GN=RPL23A PE=2 SV=1
Length = 154
Score = 203 bits (516), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 133/154 (86%), Positives = 139/154 (90%), Gaps = 2/154 (1%)
Query: 17 MAPPKGE-TKKADPKVQALKTAKAVKSGRTFKK-AKKIRTSVTFHRPKTLKKDRNPKYPR 74
MAP K + +KK+DPK QA K AKAVKSG T KK ++KIRT VTFHRPKTLKKDRNPKYPR
Sbjct: 1 MAPAKADPSKKSDPKAQAAKVAKAVKSGSTLKKKSQKIRTKVTFHRPKTLKKDRNPKYPR 60
Query: 75 ISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAK 134
ISAP RNKLD Y ILKYPLTTESAMKKIEDNNTLVFIVDI+ADKKKIKDAVKKMYDIQ K
Sbjct: 61 ISAPGRNKLDQYGILKYPLTTESAMKKIEDNNTLVFIVDIKADKKKIKDAVKKMYDIQTK 120
Query: 135 KVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 168
KVNTLIRPDGTKKAYVRLTPD DALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
>sp|Q9M3C3|R23A2_ARATH 60S ribosomal protein L23a-2 OS=Arabidopsis thaliana GN=RPL23AB
PE=2 SV=1
Length = 154
Score = 201 bits (511), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 115/128 (89%), Positives = 117/128 (91%), Gaps = 1/128 (0%)
Query: 42 SGRTFKK-AKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMK 100
SG+ KK AKKIRT VTFHRPKTL R PKYP+ISA PRNKLDHYQILKYPLTTESAMK
Sbjct: 27 SGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPKISATPRNKLDHYQILKYPLTTESAMK 86
Query: 101 KIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALD 160
KIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQ KKVNTLIRPDGTKKAYVRLTPD DALD
Sbjct: 87 KIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALD 146
Query: 161 VANKIGII 168
VANKIGII
Sbjct: 147 VANKIGII 154
>sp|Q8LD46|R23A1_ARATH 60S ribosomal protein L23a-1 OS=Arabidopsis thaliana GN=RPL23AA
PE=2 SV=2
Length = 154
Score = 195 bits (496), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 114/128 (89%), Positives = 116/128 (90%), Gaps = 1/128 (0%)
Query: 42 SGRTFKKAKK-IRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMK 100
SG+ FKK K IRT VTFHRPKTL K R KYP+ISA PRNKLDHYQILKYPLTTESAMK
Sbjct: 27 SGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPKISATPRNKLDHYQILKYPLTTESAMK 86
Query: 101 KIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALD 160
KIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQ KKVNTLIRPDGTKKAYVRLTPD DALD
Sbjct: 87 KIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALD 146
Query: 161 VANKIGII 168
VANKIGII
Sbjct: 147 VANKIGII 154
>sp|P62752|RL23A_RAT 60S ribosomal protein L23a OS=Rattus norvegicus GN=Rpl23a PE=2 SV=1
Length = 156
Score = 188 bits (477), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 96/121 (79%), Positives = 104/121 (85%)
Query: 48 KAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNT 107
K KKIRTS TF RPKTL+ R PKYPR SAP RNKLDHY I+K+PLTTESAMKKIEDNNT
Sbjct: 36 KKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNT 95
Query: 108 LVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGI 167
LVFIVD++A+K +IK AVKK+YDI KVNTLIRPDG KKAYVRL PD DALDVANKIGI
Sbjct: 96 LVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGI 155
Query: 168 I 168
I
Sbjct: 156 I 156
>sp|P62751|RL23A_MOUSE 60S ribosomal protein L23a OS=Mus musculus GN=Rpl23a PE=1 SV=1
Length = 156
Score = 188 bits (477), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 96/121 (79%), Positives = 104/121 (85%)
Query: 48 KAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNT 107
K KKIRTS TF RPKTL+ R PKYPR SAP RNKLDHY I+K+PLTTESAMKKIEDNNT
Sbjct: 36 KKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNT 95
Query: 108 LVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGI 167
LVFIVD++A+K +IK AVKK+YDI KVNTLIRPDG KKAYVRL PD DALDVANKIGI
Sbjct: 96 LVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGI 155
Query: 168 I 168
I
Sbjct: 156 I 156
>sp|P62750|RL23A_HUMAN 60S ribosomal protein L23a OS=Homo sapiens GN=RPL23A PE=1 SV=1
Length = 156
Score = 188 bits (477), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 96/121 (79%), Positives = 104/121 (85%)
Query: 48 KAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNT 107
K KKIRTS TF RPKTL+ R PKYPR SAP RNKLDHY I+K+PLTTESAMKKIEDNNT
Sbjct: 36 KKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNT 95
Query: 108 LVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGI 167
LVFIVD++A+K +IK AVKK+YDI KVNTLIRPDG KKAYVRL PD DALDVANKIGI
Sbjct: 96 LVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGI 155
Query: 168 I 168
I
Sbjct: 156 I 156
>sp|Q24JY1|RL23A_BOVIN 60S ribosomal protein L23a OS=Bos taurus GN=RPL23A PE=2 SV=1
Length = 156
Score = 188 bits (477), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 96/121 (79%), Positives = 104/121 (85%)
Query: 48 KAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNT 107
K KKIRTS TF RPKTL+ R PKYPR SAP RNKLDHY I+K+PLTTESAMKKIEDNNT
Sbjct: 36 KKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNT 95
Query: 108 LVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGI 167
LVFIVD++A+K +IK AVKK+YDI KVNTLIRPDG KKAYVRL PD DALDVANKIGI
Sbjct: 96 LVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGI 155
Query: 168 I 168
I
Sbjct: 156 I 156
>sp|P51997|RL25_PUCGR 60S ribosomal protein L25 OS=Puccinia graminis PE=2 SV=2
Length = 158
Score = 174 bits (442), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/158 (60%), Positives = 116/158 (73%), Gaps = 9/158 (5%)
Query: 19 PPKGETKKADPKVQALKT--------AKAVKSGRTFKKAKKIRTSVTFHRPKTLKKDRNP 70
PPK TK A+PK + KT KAV G + K ++IRTSVTF RPKTL+ R P
Sbjct: 2 PPKSSTK-AEPKASSAKTQVAKAKSAKKAVVKGTSSKTQRRIRTSVTFRRPKTLRLSRKP 60
Query: 71 KYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYD 130
KYPR S P ++D Y+ L PL TESAMKKIEDNNTL+FIVD++A+K++I DAVKK+YD
Sbjct: 61 KYPRTSVPHAPRMDAYRTLVRPLNTESAMKKIEDNNTLLFIVDLKANKRQIADAVKKLYD 120
Query: 131 IQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 168
+ +VNTLIRPDG KKA+VRLTP+ DALD+ANKIG I
Sbjct: 121 VTPLRVNTLIRPDGKKKAFVRLTPEVDALDIANKIGFI 158
>sp|P48162|R23A1_CAEEL 60S ribosomal protein L23a 1 OS=Caenorhabditis elegans GN=rpl-25.1
PE=3 SV=1
Length = 147
Score = 157 bits (398), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 82/137 (59%), Positives = 104/137 (75%)
Query: 32 QALKTAKAVKSGRTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKY 91
+AL K V G+ +++RTSV F RP TLK R ++PR SAP +K+DH++I+++
Sbjct: 11 KALDAKKKVVKGKRTTHRRQVRTSVHFRRPVTLKTARQARFPRKSAPKTSKMDHFRIIQH 70
Query: 92 PLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVR 151
PLTTESAMKKIE++NTLVFIV A+K +IKDAV K+Y++QA KVNTLI P KKAYVR
Sbjct: 71 PLTTESAMKKIEEHNTLVFIVSNDANKYQIKDAVHKLYNVQALKVNTLITPLQQKKAYVR 130
Query: 152 LTPDSDALDVANKIGII 168
LT D DALDVANKIG+I
Sbjct: 131 LTADYDALDVANKIGVI 147
>sp|P08792|RL25_CYBJA 60S ribosomal protein L25 OS=Cyberlindnera jadinii GN=RPL25 PE=3
SV=1
Length = 142
Score = 157 bits (396), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 80/140 (57%), Positives = 100/140 (71%)
Query: 29 PKVQALKTAKAVKSGRTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQI 88
P +A KAV G KA K+RTS TF PKTLK R PKY R + P +LD+Y++
Sbjct: 3 PSTKAASAKKAVVKGSNGSKALKVRTSTTFRLPKTLKLTRAPKYARKAVPHYQRLDNYKV 62
Query: 89 LKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKA 148
+ P+ +E+AMKK+ED NTLVF VDI+A+K +IK AVK +Y++ VNTLIRP+GTKKA
Sbjct: 63 IVAPIASETAMKKVEDGNTLVFQVDIKANKHQIKQAVKDLYEVDVLAVNTLIRPNGTKKA 122
Query: 149 YVRLTPDSDALDVANKIGII 168
YVRLT D DALD+ANKIG I
Sbjct: 123 YVRLTADHDALDIANKIGYI 142
>sp|P48045|RL25_KLULA 60S ribosomal protein L25 OS=Kluyveromyces lactis (strain ATCC 8585
/ CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=RPL25 PE=3 SV=1
Length = 142
Score = 155 bits (392), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/140 (55%), Positives = 103/140 (73%)
Query: 29 PKVQALKTAKAVKSGRTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQI 88
P +A KAV G KKA K+RTS +F PKTLK R+PKY + P N+LD Y++
Sbjct: 3 PSTKATAAKKAVVKGTNGKKALKVRTSASFRLPKTLKLARSPKYATKAVPHYNRLDSYKV 62
Query: 89 LKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKA 148
++ P+T+E+AMKK+ED NTLVF V ++A+K +IK AVK++Y++ VNTL+RP+GTKKA
Sbjct: 63 IEQPITSETAMKKVEDGNTLVFKVSLKANKYQIKKAVKELYEVDVLSVNTLVRPNGTKKA 122
Query: 149 YVRLTPDSDALDVANKIGII 168
YVRLT D DALD+AN+IG I
Sbjct: 123 YVRLTADFDALDIANRIGYI 142
>sp|O74391|RL25B_SCHPO 60S ribosomal protein L25-B OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl25b PE=3 SV=1
Length = 141
Score = 154 bits (388), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 77/131 (58%), Positives = 102/131 (77%)
Query: 38 KAVKSGRTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTES 97
K V+ G K A+K+RTS TF RPKTL+ R PKY R S P ++LD Y+I+ P+ +ES
Sbjct: 11 KTVQKGIHNKVARKVRTSTTFRRPKTLELARKPKYARKSVPHASRLDEYKIIVNPINSES 70
Query: 98 AMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSD 157
AMKKIED+NTLVF V ++A+K IK+AVKK+Y + A K+NTLIRP+GTKKA+V+L+ D+D
Sbjct: 71 AMKKIEDDNTLVFHVHLKANKFTIKNAVKKLYSVDAVKINTLIRPNGTKKAFVKLSADAD 130
Query: 158 ALDVANKIGII 168
ALDVAN+IG +
Sbjct: 131 ALDVANRIGFL 141
>sp|Q20647|R23A2_CAEEL 60S ribosomal protein L23a 2 OS=Caenorhabditis elegans GN=rpl-25.2
PE=3 SV=1
Length = 146
Score = 150 bits (380), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/152 (55%), Positives = 102/152 (67%), Gaps = 6/152 (3%)
Query: 17 MAPPKGETKKADPKVQALKTAKAVKSGRTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 76
MAP + KA ++ KAV G K +RTSV F RPKTL R P+Y R S
Sbjct: 1 MAPSSNKVGKA------IQAKKAVVKGSKTNVRKNVRTSVHFRRPKTLVTARAPRYARKS 54
Query: 77 APPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKV 136
AP R+KLD + ++K P TTES+MKKIED+NTLVFIVD +A+K IK AV +Y+++A KV
Sbjct: 55 APARDKLDSFAVIKAPHTTESSMKKIEDHNTLVFIVDEKANKHHIKRAVHALYNVKAVKV 114
Query: 137 NTLIRPDGTKKAYVRLTPDSDALDVANKIGII 168
NTLI P KKAYVRL D DALDVANKIG I
Sbjct: 115 NTLITPLQQKKAYVRLASDYDALDVANKIGFI 146
>sp|P04456|RL25_YEAST 60S ribosomal protein L25 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPL25 PE=1 SV=4
Length = 142
Score = 149 bits (377), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 73/126 (57%), Positives = 96/126 (76%)
Query: 43 GRTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKI 102
G KKA K+RTS TF PKTLK R PKY + P N+LD Y++++ P+T+E+AMKK+
Sbjct: 17 GTNGKKALKVRTSATFRLPKTLKLARAPKYASKAVPHYNRLDSYKVIEQPITSETAMKKV 76
Query: 103 EDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVA 162
ED N LVF V ++A+K +IK AVK++Y++ KVNTL+RP+GTKKAYVRLT D DALD+A
Sbjct: 77 EDGNILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIA 136
Query: 163 NKIGII 168
N+IG I
Sbjct: 137 NRIGYI 142
>sp|Q10330|RL25A_SCHPO 60S ribosomal protein L25-A OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl25a PE=1 SV=1
Length = 141
Score = 149 bits (375), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 75/131 (57%), Positives = 100/131 (76%)
Query: 38 KAVKSGRTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTES 97
K V+ G K AKK+RTS TF RPKTL+ R PKY R S +LD Y+I+ P+ +ES
Sbjct: 11 KTVQKGIHNKVAKKVRTSTTFRRPKTLQLSRKPKYARKSVAHAPRLDEYKIIVNPINSES 70
Query: 98 AMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSD 157
AMKKIED+NTLVF V ++A+K IK+AV+K+Y ++ K+NTLIRP+GTKKA+V+L+ D+D
Sbjct: 71 AMKKIEDDNTLVFHVHLKANKFTIKEAVRKLYSVEPVKINTLIRPNGTKKAFVKLSADAD 130
Query: 158 ALDVANKIGII 168
ALDVAN+IG +
Sbjct: 131 ALDVANRIGFL 141
>sp|Q54BQ3|RL23A_DICDI 60S ribosomal protein L23a OS=Dictyostelium discoideum GN=rpl23a
PE=1 SV=1
Length = 169
Score = 141 bits (356), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/126 (54%), Positives = 92/126 (73%)
Query: 43 GRTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKI 102
G + K +K+RTSV F RP TL + P YPR S K+D ++ILK PLTTESA +KI
Sbjct: 44 GVSNKSTRKVRTSVIFRRPVTLNNPKKPAYPRRSVNKITKMDQFRILKAPLTTESATQKI 103
Query: 103 EDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVA 162
E +NT+ F+VD+ A+K ++ DAV KMYD++ K+VNTLI P G KKA+V L+P+ +A DVA
Sbjct: 104 EGSNTITFMVDMFANKSQVADAVAKMYDVKVKRVNTLITPRGEKKAFVTLSPEFEAADVA 163
Query: 163 NKIGII 168
NKIG+I
Sbjct: 164 NKIGLI 169
>sp|P41165|RL23A_TRYBB 60S ribosomal protein L23a OS=Trypanosoma brucei brucei GN=RPL23A
PE=2 SV=1
Length = 164
Score = 125 bits (314), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/112 (56%), Positives = 85/112 (75%), Gaps = 6/112 (5%)
Query: 57 TFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRA 116
T+ RP T+K N +SA +NK D ++I++YPLTT+ AMKKIE+NNTL FIVD RA
Sbjct: 59 TYRRPATVKPSSN-----VSAI-KNKWDAFRIIRYPLTTDKAMKKIEENNTLTFIVDSRA 112
Query: 117 DKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 168
+K +IK A++K+Y ++ KVNTLIRPDG KKAY+RL+ DALD ANK+G++
Sbjct: 113 NKTEIKKAIRKLYQVKTVKVNTLIRPDGLKKAYIRLSASYDALDTANKMGLV 164
>sp|P0DJ57|RL23A_TETTS 60S ribosomal protein L23A OS=Tetrahymena thermophila (strain
SB210) GN=RPL23A PE=1 SV=1
Length = 150
Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/148 (46%), Positives = 92/148 (62%), Gaps = 8/148 (5%)
Query: 28 DPKVQALK----TAKAVKSGRTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRI---SAPPR 80
+ K QA+ TAK K G + K K T V F RPKTL+ + PKY R
Sbjct: 4 ENKTQAVNKAKNTAKVAKKGSSITK-HKTYTGVRFFRPKTLQLAKAPKYSRTVRAHLKVS 62
Query: 81 NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLI 140
LD++ ++K PLTTE AMKK+ED NT+VF V R+ K +IK A +K+Y+++ + VNTL
Sbjct: 63 GHLDNHSVVKTPLTTEKAMKKMEDENTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLN 122
Query: 141 RPDGTKKAYVRLTPDSDALDVANKIGII 168
G KKAY+RL DSD+L +ANKIG+I
Sbjct: 123 TITGNKKAYIRLAADSDSLTLANKIGLI 150
>sp|Q9LWB5|RK23_SPIOL 50S ribosomal protein L23, chloroplastic OS=Spinacia oleracea
GN=RPL23 PE=1 SV=1
Length = 198
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/90 (54%), Positives = 68/90 (75%)
Query: 79 PRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNT 138
PR LD YQIL+ P+ TE+A+K I D N+L+F VD+RADKK I++A+ + ++ +KVNT
Sbjct: 105 PRRILDVYQILQSPIITEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNT 164
Query: 139 LIRPDGTKKAYVRLTPDSDALDVANKIGII 168
LIRPDGTKKAY+ L + +A ++A KIGI
Sbjct: 165 LIRPDGTKKAYIMLNKEYNASELAKKIGIF 194
>sp|B6YSL5|RL23_THEON 50S ribosomal protein L23P OS=Thermococcus onnurineus (strain NA1)
GN=rpl23p PE=3 SV=1
Length = 86
Score = 82.8 bits (203), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 60/85 (70%)
Query: 83 LDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRP 142
+D Y+++ P+ TE A+ IE+ N L FIVD RA K+ IK AV+ M+D++ +KVNTLI
Sbjct: 1 MDPYKVIIRPVVTEKAVAMIENENKLTFIVDRRATKQDIKRAVEAMFDVKVEKVNTLITM 60
Query: 143 DGTKKAYVRLTPDSDALDVANKIGI 167
G KKAYV+L P+ A ++A +IG+
Sbjct: 61 RGEKKAYVKLKPEYSASEIAARIGL 85
>sp|P54016|RL23_METJA 50S ribosomal protein L23P OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=rpl23p PE=3 SV=1
Length = 86
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 59/85 (69%)
Query: 83 LDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRP 142
+D + ++K P+ TE ++ IE+ N LVF VD RA K+ IK A+K+++D++ +KVNTLI P
Sbjct: 1 MDAFDVIKAPVVTEKTVRMIEEENKLVFYVDRRATKQDIKRAMKELFDVEVEKVNTLITP 60
Query: 143 DGTKKAYVRLTPDSDALDVANKIGI 167
G KKAYV+L DA +A +GI
Sbjct: 61 KGEKKAYVKLKEGYDASKIAASLGI 85
>sp|Q8U000|RL23_PYRFU 50S ribosomal protein L23P OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=rpl23p PE=1 SV=2
Length = 86
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 61/85 (71%)
Query: 83 LDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRP 142
+D Y+++ P+ TE A+ IE N L FIVD RA K+ IK AV+++++++ +KVNTLI P
Sbjct: 1 MDPYKVIIRPVVTEKAISLIEKENKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITP 60
Query: 143 DGTKKAYVRLTPDSDALDVANKIGI 167
G KKAYV+L P+ A +VA ++G+
Sbjct: 61 RGEKKAYVKLKPEYSASEVAARLGL 85
>sp|Q5JDH1|RL23_PYRKO 50S ribosomal protein L23P OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=rpl23p PE=3 SV=1
Length = 86
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 60/86 (69%)
Query: 83 LDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRP 142
+D Y+++ PL TE A+ IE N L FIVD RA K+ IK AV++M++++ KVNTL+
Sbjct: 1 MDPYKVIIRPLVTEKAVSLIERENKLTFIVDRRATKQDIKRAVEEMFNVKVAKVNTLVTM 60
Query: 143 DGTKKAYVRLTPDSDALDVANKIGII 168
G KKAYV+L P+ DA ++A ++G+
Sbjct: 61 KGEKKAYVKLKPEYDASEIAARLGLF 86
>sp|Q8TY92|RL23_METKA 50S ribosomal protein L23P OS=Methanopyrus kandleri (strain AV19 /
DSM 6324 / JCM 9639 / NBRC 100938) GN=rpl23p PE=3 SV=1
Length = 95
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 59/85 (69%)
Query: 84 DHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD 143
D + +L YP+ TE AM+ +E N L FIV A+K IK AV++++D++ +KVNTLI P
Sbjct: 11 DPHDVLLYPVATEKAMRLMEAENKLTFIVRRDANKPLIKKAVEELFDVEVEKVNTLITPT 70
Query: 144 GTKKAYVRLTPDSDALDVANKIGII 168
G KKAYV+L P+ A DVA +GI+
Sbjct: 71 GEKKAYVKLKPEYRAEDVAVDLGIL 95
>sp|A6UV66|RL23_META3 50S ribosomal protein L23P OS=Methanococcus aeolicus (strain
Nankai-3 / ATCC BAA-1280) GN=rpl23p PE=3 SV=1
Length = 86
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 60/85 (70%)
Query: 83 LDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRP 142
+D + ++K P+ +E MK IE+ N LVF +D +A K +K+AVK+++D++ K +NTLI P
Sbjct: 1 MDAFDVIKMPIISEKTMKLIEEENKLVFYIDKKATKTDVKNAVKELFDVEVKDLNTLITP 60
Query: 143 DGTKKAYVRLTPDSDALDVANKIGI 167
G KKAY++L + DA +VA +GI
Sbjct: 61 KGKKKAYIKLKDEYDAGEVAANLGI 85
>sp|O74095|RL23_PYRHO 50S ribosomal protein L23P OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rpl23p PE=3 SV=1
Length = 86
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 60/85 (70%)
Query: 83 LDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRP 142
+D Y+++ P+ TE A+ IE N L FIVD RA K IK A++++++++ +KVNTLI P
Sbjct: 1 MDPYKVIIRPVVTEKAISLIEKENKLTFIVDRRATKTDIKKAIEEIFNVKVEKVNTLITP 60
Query: 143 DGTKKAYVRLTPDSDALDVANKIGI 167
G KKAYV+L P+ A ++A ++G+
Sbjct: 61 KGEKKAYVKLKPEYSASEIAARLGL 85
>sp|C5A284|RL23_THEGJ 50S ribosomal protein L23P OS=Thermococcus gammatolerans (strain
DSM 15229 / JCM 11827 / EJ3) GN=rpl23p PE=3 SV=1
Length = 86
Score = 80.1 bits (196), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 61/86 (70%)
Query: 83 LDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRP 142
+D Y+++ PL TE A+ IE N L FIVD +A K+ IK AV++M++++ +KVNTLI
Sbjct: 1 MDPYKVIIRPLVTEKAVSLIEKENKLTFIVDRKATKQDIKRAVEEMFNVKVEKVNTLITM 60
Query: 143 DGTKKAYVRLTPDSDALDVANKIGII 168
G KKAYV+L P+ +A ++A ++G+
Sbjct: 61 KGEKKAYVKLRPEYNASEIAARLGLF 86
>sp|Q9V1T7|RL23_PYRAB 50S ribosomal protein L23P OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=rpl23p PE=3 SV=1
Length = 86
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 61/85 (71%)
Query: 83 LDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRP 142
+D Y+++ P+ T+ A+ IE N L FIVD RA K+ IK A++++++++ +KVNTLI P
Sbjct: 1 MDPYKVIIRPVITDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITP 60
Query: 143 DGTKKAYVRLTPDSDALDVANKIGI 167
G KKAYV+L P+ A ++A ++G+
Sbjct: 61 KGEKKAYVKLKPEYSASEIAARLGL 85
>sp|P12732|RL23_HALMA 50S ribosomal protein L23P OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rpl23p PE=1
SV=2
Length = 85
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 55/83 (66%)
Query: 86 YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGT 145
+ ++K+P TE AM ++ N L F VD RA K ++ DAV++ YD+ ++VNT DG
Sbjct: 3 WDVIKHPHVTEKAMNDMDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGE 62
Query: 146 KKAYVRLTPDSDALDVANKIGII 168
KKA VRL+ D DA +VA++IG+
Sbjct: 63 KKAVVRLSEDDDAQEVASRIGVF 85
>sp|Q06842|RL23_HALSA 50S ribosomal protein L23P OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=rpl23p PE=1 SV=3
Length = 84
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 54/80 (67%)
Query: 88 ILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKK 147
I+ YPL TE AM +++ N L FIVDI A K +I+D V+ YD+ VNT I P+ KK
Sbjct: 4 IIDYPLVTEKAMDEMDFQNKLQFIVDIDAAKPEIRDVVESEYDVTVVDVNTQITPEAEKK 63
Query: 148 AYVRLTPDSDALDVANKIGI 167
A V+L+ + DA DVA++IG+
Sbjct: 64 ATVKLSAEDDAQDVASRIGV 83
>sp|Q4JB42|RL23_SULAC 50S ribosomal protein L23P OS=Sulfolobus acidocaldarius (strain
ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB
11770) GN=rpl23p PE=3 SV=1
Length = 82
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 56/81 (69%)
Query: 88 ILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKK 147
I+K L TE A+K IE NTL IV+ KK IK+ V+K++ ++ +K+NTLI P G KK
Sbjct: 2 IIKEFLATEKAVKLIESQNTLTIIVNRNTTKKDIKNEVEKLFSVKVEKINTLITPKGEKK 61
Query: 148 AYVRLTPDSDALDVANKIGII 168
AYV+L + A DVA+K+G++
Sbjct: 62 AYVKLKQEYKASDVAHKLGML 82
>sp|P10143|RL23_METVS 50S ribosomal protein L23P OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=rpl23p PE=1 SV=1
Length = 86
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 59/85 (69%)
Query: 83 LDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRP 142
+D + ++K P+ +E MK IE+ N LVF V+ +A K+ IK+A+K++++ + +VNT I P
Sbjct: 1 MDAFDVIKTPIVSEKTMKLIEEENRLVFYVERKATKEDIKEAIKQLFNAEVAEVNTNITP 60
Query: 143 DGTKKAYVRLTPDSDALDVANKIGI 167
G KKAY++L + +A +VA +GI
Sbjct: 61 KGQKKAYIKLKDEYNAGEVAASLGI 85
>sp|A3DNA6|RL23_STAMF 50S ribosomal protein L23P OS=Staphylothermus marinus (strain ATCC
43588 / DSM 3639 / F1) GN=rpl23p PE=3 SV=1
Length = 91
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 57/83 (68%)
Query: 86 YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGT 145
Y+I+ P+ +E A+ I+ NTL FIVD A KK IKDAV+ ++ ++ KV TLI G
Sbjct: 9 YKIIIRPVHSEKALNLIDKENTLTFIVDRNASKKDIKDAVELVFGVKVLKVRTLITSRGE 68
Query: 146 KKAYVRLTPDSDALDVANKIGII 168
KKAYV+L P+ A ++A+++G+I
Sbjct: 69 KKAYVKLAPEHRASEIASQLGLI 91
>sp|C6A161|RL23_THESM 50S ribosomal protein L23P OS=Thermococcus sibiricus (strain MM 739
/ DSM 12597) GN=rpl23p PE=3 SV=1
Length = 86
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 56/85 (65%)
Query: 83 LDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRP 142
+D Y+++ P+ TE A+ +E N L FIVD RA K IK AV+ +Y+++ KVN +I
Sbjct: 1 MDPYKVIVRPVVTEKAISMVERENKLTFIVDKRATKPDIKKAVETVYEVKVDKVNIVITM 60
Query: 143 DGTKKAYVRLTPDSDALDVANKIGI 167
G KKAYV+L P+ A +VA +IG+
Sbjct: 61 KGEKKAYVKLKPEYSASEVAARIGL 85
>sp|Q8ZW50|RL23_PYRAE 50S ribosomal protein L23P OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827)
GN=rpl23p PE=3 SV=1
Length = 81
Score = 73.2 bits (178), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 58/81 (71%)
Query: 88 ILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKK 147
++K + TE A++ E N + IVD A KK+I + V+++Y+++ +KVNTLI P G KK
Sbjct: 1 MIKRIVVTEKALRLAEKENKITLIVDRGATKKQIAEEVERLYNVKVEKVNTLITPRGEKK 60
Query: 148 AYVRLTPDSDALDVANKIGII 168
AYV+LT + +A+D+ +K+G++
Sbjct: 61 AYVKLTKEHNAMDLLSKLGVL 81
>sp|Q975I3|RL23_SULTO 50S ribosomal protein L23P OS=Sulfolobus tokodaii (strain DSM 16993
/ JCM 10545 / NBRC 100140 / 7) GN=rpl23p PE=3 SV=1
Length = 82
Score = 72.8 bits (177), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 56/81 (69%)
Query: 88 ILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKK 147
I+K LTTE A+K IE NTL IV+ A K IK ++KM++++ KVNTLI G KK
Sbjct: 2 IIKEFLTTEKAIKLIESQNTLTVIVNKEATKADIKREIEKMFNVKVDKVNTLITIRGEKK 61
Query: 148 AYVRLTPDSDALDVANKIGII 168
AYV+L + +A D+A+++GI+
Sbjct: 62 AYVKLKKEFNASDIAHRLGIL 82
>sp|Q9YFM0|RL23_AERPE 50S ribosomal protein L23P OS=Aeropyrum pernix (strain ATCC 700893
/ DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rpl23p
PE=3 SV=2
Length = 86
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 50/74 (67%)
Query: 95 TESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTP 154
TE + +E+ NTL FIV A K +K AV++++ ++ +KV TLI P G KKAYV+L P
Sbjct: 13 TEKTTRMLEEENTLTFIVRREATKNDVKRAVEQLFGVKVEKVRTLITPRGYKKAYVKLAP 72
Query: 155 DSDALDVANKIGII 168
+ ALDVA K+G +
Sbjct: 73 EYKALDVATKLGAV 86
>sp|A6VHD4|RL23_METM7 50S ribosomal protein L23P OS=Methanococcus maripaludis (strain C7
/ ATCC BAA-1331) GN=rpl23p PE=3 SV=1
Length = 86
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 55/85 (64%)
Query: 83 LDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRP 142
+D + ++K P+ +E MK IE+ N LVF V+ +A K I+ A+K+++D + +NT I P
Sbjct: 1 MDAFDVIKTPIVSEKTMKLIEEENRLVFYVERKATKADIRAAIKELFDAEVADINTSITP 60
Query: 143 DGTKKAYVRLTPDSDALDVANKIGI 167
G KKAY+ L + +A +VA +GI
Sbjct: 61 KGKKKAYITLKSEYNAGEVAASLGI 85
>sp|A4FVY0|RL23_METM5 50S ribosomal protein L23P OS=Methanococcus maripaludis (strain C5
/ ATCC BAA-1333) GN=rpl23p PE=3 SV=1
Length = 86
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 55/85 (64%)
Query: 83 LDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRP 142
+D + ++K P+ +E MK IE+ N LVF V+ +A K I+ A+K+++D + +NT I P
Sbjct: 1 MDAFDVIKTPIVSEKTMKLIEEENRLVFYVERKATKADIRAAIKELFDAEVADINTSITP 60
Query: 143 DGTKKAYVRLTPDSDALDVANKIGI 167
G KKAY+ L + +A +VA +GI
Sbjct: 61 KGKKKAYITLKAEYNAGEVAASLGI 85
>sp|A9A9B6|RL23_METM6 50S ribosomal protein L23P OS=Methanococcus maripaludis (strain C6
/ ATCC BAA-1332) GN=rpl23p PE=3 SV=1
Length = 86
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 54/85 (63%)
Query: 83 LDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRP 142
+D + ++K P+ +E MK IE+ N LVF V+ +A K I A+K+++D + +NT I P
Sbjct: 1 MDAFDVIKTPIVSEKTMKLIEEENRLVFYVERKATKADISAAIKELFDAEVADINTSITP 60
Query: 143 DGTKKAYVRLTPDSDALDVANKIGI 167
G KKAY+ L + +A +VA +GI
Sbjct: 61 KGKKKAYITLKAEYNAGEVAASLGI 85
>sp|O28356|RL23_ARCFU 50S ribosomal protein L23P OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=rpl23p PE=3 SV=1
Length = 83
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 57/81 (70%), Gaps = 1/81 (1%)
Query: 87 QILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTK 146
++K L TE ++ ++E N L IVD+RA K+ IK ++K+++++ ++VNTLI P G K
Sbjct: 3 MLIKCFLVTEKSVAELE-KNVLTAIVDMRARKEHIKKEIEKLFNVEVERVNTLITPKGEK 61
Query: 147 KAYVRLTPDSDALDVANKIGI 167
KAY++L PD A ++ +K+G+
Sbjct: 62 KAYIKLKPDYSAEEILSKLGV 82
>sp|Q6LX09|RL23_METMP 50S ribosomal protein L23P OS=Methanococcus maripaludis (strain S2
/ LL) GN=rpl23p PE=3 SV=1
Length = 86
Score = 69.7 bits (169), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 55/85 (64%)
Query: 83 LDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRP 142
+D + ++K P+ +E MK IE+ N LVF V+ +A K ++ A+K+++D + +NT I P
Sbjct: 1 MDAFDVIKTPIVSEKTMKLIEEENRLVFYVERKATKADVRAAIKELFDAEVADINTSITP 60
Query: 143 DGTKKAYVRLTPDSDALDVANKIGI 167
G KKAY+ L + +A +VA +GI
Sbjct: 61 KGKKKAYITLKDEYNAGEVAASLGI 85
>sp|Q3IMY6|RL23_NATPD 50S ribosomal protein L23P OS=Natronomonas pharaonis (strain DSM
2160 / ATCC 35678) GN=rpl23p PE=3 SV=1
Length = 82
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 49/80 (61%)
Query: 89 LKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKA 148
+K+PL TE AM ++ N L F+ A K I AV+ +D++ +NT +R DG KKA
Sbjct: 3 IKHPLVTEKAMNDMDFENKLQFVCHPEATKGDIAAAVESQFDVEVDSINTQVRMDGDKKA 62
Query: 149 YVRLTPDSDALDVANKIGII 168
V L+ D DA +VA++IG+
Sbjct: 63 IVELSADDDAQEVASRIGVF 82
>sp|Q18GF1|RL23_HALWD 50S ribosomal protein L23P OS=Haloquadratum walsbyi (strain DSM
16790) GN=rpl23p PE=3 SV=1
Length = 84
Score = 66.2 bits (160), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 52/80 (65%)
Query: 88 ILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKK 147
+++YPL TE AM +++ +N L FIVD A K +I++ ++ Y+I T I P KK
Sbjct: 4 LIEYPLVTEKAMDEMDFDNKLQFIVDTDATKDEIENEIESRYEITIIDTKTQITPRAKKK 63
Query: 148 AYVRLTPDSDALDVANKIGI 167
A VRL+ D DA D+A++IG+
Sbjct: 64 ATVRLSDDDDAQDIASRIGV 83
>sp|O26112|RL23_METTH 50S ribosomal protein L23P OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpl23p PE=3 SV=2
Length = 86
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 54/86 (62%)
Query: 83 LDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRP 142
+D Y ++ P TE +M I+ NN L F+V ++ KK ++ A ++++ ++ ++VNT + P
Sbjct: 1 MDPYAVIMKPHVTEKSMNLIDQNNELAFVVMRKSTKKDVRRAFEELFAVKVERVNTQVTP 60
Query: 143 DGTKKAYVRLTPDSDALDVANKIGII 168
G K AY++L + A D+A K+G+
Sbjct: 61 RGQKIAYIKLAKEHSAEDIAVKLGVF 86
>sp|Q97ZQ4|RL23_SULSO 50S ribosomal protein L23P OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=rpl23p PE=3 SV=1
Length = 81
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 54/81 (66%)
Query: 88 ILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKK 147
+++ L TE A+K IE NTL IVD K IK +V+++++++ KVN +I P G KK
Sbjct: 1 MIQMALATEKALKLIESYNTLTLIVDKSDTKDDIKKSVERLFNVKVVKVNVVITPQGYKK 60
Query: 148 AYVRLTPDSDALDVANKIGII 168
AYV+L P+ A D+A+K+GI
Sbjct: 61 AYVKLAPEYKASDIAHKLGIF 81
>sp|B5FG11|RL23_VIBFM 50S ribosomal protein L23 OS=Vibrio fischeri (strain MJ11) GN=rplW
PE=3 SV=1
Length = 100
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 46/71 (64%)
Query: 87 QILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTK 146
++L+ PL +E A E NNT+VF V I A KK+IK AV+K+++++ K VNTLI TK
Sbjct: 9 KVLRGPLISEKATMAAEGNNTIVFKVAINATKKEIKAAVEKLFEVEVKSVNTLITKGKTK 68
Query: 147 KAYVRLTPDSD 157
+ +R SD
Sbjct: 69 RQGLRQGRRSD 79
>sp|Q5E8B3|RL23_VIBF1 50S ribosomal protein L23 OS=Vibrio fischeri (strain ATCC 700601 /
ES114) GN=rplW PE=3 SV=1
Length = 100
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 46/71 (64%)
Query: 87 QILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTK 146
++L+ PL +E A E NNT+VF V I A KK+IK AV+K+++++ K VNTLI TK
Sbjct: 9 KVLRGPLISEKATMAAEGNNTIVFKVAINATKKEIKAAVEKLFEVEVKSVNTLITKGKTK 68
Query: 147 KAYVRLTPDSD 157
+ +R SD
Sbjct: 69 RQGLRQGRRSD 79
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,769,950
Number of Sequences: 539616
Number of extensions: 2119464
Number of successful extensions: 8318
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 79
Number of HSP's that attempted gapping in prelim test: 7823
Number of HSP's gapped (non-prelim): 522
length of query: 168
length of database: 191,569,459
effective HSP length: 109
effective length of query: 59
effective length of database: 132,751,315
effective search space: 7832327585
effective search space used: 7832327585
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)