Query 030945
Match_columns 168
No_of_seqs 206 out of 1149
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 10:44:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030945.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030945hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_X 60S ribosomal protein L 100.0 2.9E-68 9.8E-73 424.3 10.5 151 17-168 1-152 (152)
2 3u5e_X 60S ribosomal protein L 100.0 2.4E-66 8.1E-71 409.4 12.6 139 30-168 4-142 (142)
3 4a17_R RPL23A, 60S ribosomal p 100.0 4.3E-65 1.5E-69 405.2 10.5 143 25-168 5-150 (150)
4 2zkr_s 60S ribosomal protein L 100.0 4.4E-64 1.5E-68 401.7 9.1 152 17-168 1-156 (156)
5 3bbo_V Ribosomal protein L23; 100.0 2.6E-46 8.7E-51 306.9 4.5 111 52-168 84-194 (198)
6 3j21_T 50S ribosomal protein L 100.0 5.6E-42 1.9E-46 250.6 10.7 86 83-168 1-86 (86)
7 1vq8_S 50S ribosomal protein L 100.0 8.5E-39 2.9E-43 233.2 9.5 84 85-168 2-85 (85)
8 3tve_T 50S ribosomal protein L 100.0 1.9E-32 6.6E-37 202.1 6.9 78 84-163 1-91 (92)
9 2zjr_Q 50S ribosomal protein L 100.0 6.5E-32 2.2E-36 200.3 6.9 81 83-165 1-94 (95)
10 3r8s_T 50S ribosomal protein L 100.0 2.4E-31 8.2E-36 196.6 7.1 76 82-157 4-92 (93)
11 2dhg_A TRNA selenocysteine ass 74.8 12 0.0004 25.1 6.6 54 107-161 12-67 (104)
12 3md3_A Nuclear and cytoplasmic 67.2 17 0.00056 25.5 6.3 53 108-162 4-58 (166)
13 1owx_A Lupus LA protein, SS-B, 65.4 8.9 0.00031 28.5 4.7 56 105-165 17-76 (121)
14 2ywk_A Putative RNA-binding pr 63.4 26 0.00088 22.8 6.3 52 109-162 21-74 (95)
15 2do4_A Squamous cell carcinoma 62.4 17 0.00059 24.1 5.3 54 107-162 20-75 (100)
16 1x5p_A Negative elongation fac 58.1 32 0.0011 22.7 6.1 51 106-161 15-65 (97)
17 2do0_A HnRNP M, heterogeneous 57.8 23 0.00079 23.9 5.4 54 107-162 18-73 (114)
18 2d9o_A DNAJ (HSP40) homolog, s 57.7 19 0.00064 25.3 5.0 45 114-162 27-71 (100)
19 3nmr_A Cugbp ELAV-like family 53.8 29 0.00098 24.5 5.6 55 106-162 97-153 (175)
20 2e44_A Insulin-like growth fac 53.3 44 0.0015 21.7 7.0 53 106-161 17-70 (96)
21 2cq2_A Hypothetical protein LO 52.9 25 0.00086 25.5 5.2 52 107-163 26-81 (114)
22 2lxi_A RNA-binding protein 10; 52.1 9.3 0.00032 25.6 2.5 51 110-161 7-60 (91)
23 3d2w_A TAR DNA-binding protein 51.5 13 0.00044 24.8 3.1 50 106-159 13-62 (89)
24 1whw_A Hypothetical protein ri 50.9 25 0.00087 23.1 4.6 54 107-162 9-67 (99)
25 2hvz_A Splicing factor, argini 50.6 31 0.0011 22.8 5.0 49 109-161 5-53 (101)
26 2dnh_A Bruno-like 5, RNA bindi 50.2 31 0.0011 22.9 5.0 53 107-161 16-72 (105)
27 3s7r_A Heterogeneous nuclear r 49.5 48 0.0016 21.1 5.8 51 109-161 16-69 (87)
28 2err_A Ataxin-2-binding protei 49.5 15 0.00052 25.2 3.4 55 107-163 30-87 (109)
29 3beg_B Splicing factor, argini 48.8 26 0.00089 24.3 4.6 52 105-162 17-68 (115)
30 3q2s_C Cleavage and polyadenyl 48.2 46 0.0016 26.2 6.5 55 107-162 71-129 (229)
31 2cqc_A Arginine/serine-rich sp 47.0 42 0.0015 21.6 5.2 54 107-162 18-74 (95)
32 3mdf_A Peptidyl-prolyl CIS-tra 46.9 33 0.0011 21.7 4.5 52 109-162 12-66 (85)
33 1s79_A Lupus LA protein; RRM, 46.6 37 0.0013 23.3 5.1 53 106-160 13-67 (103)
34 4a8x_A RNA-binding protein wit 46.5 33 0.0011 21.8 4.5 54 108-163 8-65 (88)
35 2cph_A RNA binding motif prote 45.6 45 0.0015 22.0 5.3 55 109-165 20-78 (107)
36 4fxv_A ELAV-like protein 1; RN 45.4 48 0.0016 22.4 5.4 52 108-161 23-77 (99)
37 2fy1_A RNA-binding motif prote 45.1 31 0.001 24.0 4.4 51 110-162 13-65 (116)
38 2adc_A Polypyrimidine tract-bi 44.5 35 0.0012 26.1 5.1 52 109-163 156-207 (229)
39 1x4a_A Splicing factor, argini 43.8 34 0.0012 23.0 4.4 51 110-162 28-78 (109)
40 1p27_B RNA-binding protein 8A; 43.2 60 0.0021 21.4 5.6 52 109-162 28-82 (106)
41 4f25_A Polyadenylate-binding p 42.5 40 0.0014 23.2 4.7 54 106-161 7-61 (115)
42 3ulh_A THO complex subunit 4; 41.7 64 0.0022 21.3 5.5 54 106-161 29-86 (107)
43 2cq3_A RNA-binding protein 9; 41.5 39 0.0013 22.4 4.4 49 112-162 23-72 (103)
44 2dgw_A Probable RNA-binding pr 41.4 43 0.0015 21.6 4.5 46 111-159 17-64 (91)
45 2dha_A FLJ20171 protein; RRM d 41.3 28 0.00094 25.1 3.8 55 106-160 23-83 (123)
46 3s8s_A Histone-lysine N-methyl 40.2 52 0.0018 22.8 5.0 54 106-161 8-64 (110)
47 2cq4_A RNA binding motif prote 40.0 51 0.0017 22.3 4.9 53 107-161 28-83 (114)
48 1x5s_A Cold-inducible RNA-bind 39.9 45 0.0015 21.9 4.5 50 111-162 19-71 (102)
49 1x4c_A Splicing factor, argini 39.8 43 0.0015 22.6 4.4 49 107-161 18-66 (108)
50 1wez_A HnRNP H', FTP-3, hetero 39.8 23 0.00078 24.2 3.0 47 111-160 22-70 (102)
51 2dnn_A RNA-binding protein 12; 39.8 20 0.00068 25.3 2.7 46 112-160 24-71 (109)
52 2dnm_A SRP46 splicing factor; 39.2 64 0.0022 21.2 5.2 50 112-163 21-73 (103)
53 3a9j_A Ubiquitin; protein comp 38.8 44 0.0015 20.7 4.1 36 105-140 10-45 (76)
54 2xs2_A Deleted in azoospermia- 38.8 81 0.0028 20.7 6.3 49 111-161 16-66 (102)
55 2jvr_A Nucleolar protein 3; RN 38.8 40 0.0014 23.8 4.3 51 108-161 32-83 (111)
56 1x4g_A Nucleolysin TIAR; struc 38.7 60 0.0021 21.7 5.1 52 106-162 25-78 (109)
57 3ex7_B RNA-binding protein 8A; 38.7 46 0.0016 22.9 4.5 54 107-162 23-81 (126)
58 2hgm_A HNRPF protein, heteroge 38.5 30 0.001 25.2 3.7 54 107-161 43-100 (126)
59 2d9p_A Polyadenylate-binding p 38.5 50 0.0017 21.8 4.6 52 107-161 18-71 (103)
60 1wi8_A EIF-4B, eukaryotic tran 38.4 26 0.0009 23.4 3.1 46 112-160 23-72 (104)
61 2dis_A Unnamed protein product 37.8 52 0.0018 21.9 4.6 54 107-163 9-70 (109)
62 2dnz_A Probable RNA-binding pr 37.8 56 0.0019 21.1 4.6 49 112-162 13-64 (95)
63 2cqg_A TDP-43, TAR DNA-binding 37.5 86 0.0029 20.6 5.6 50 110-161 21-73 (103)
64 2kt5_A RNA and export factor-b 37.5 47 0.0016 22.8 4.5 54 106-161 35-92 (124)
65 3k9o_B Ubiquitin, UBB+1; E2-25 36.8 47 0.0016 22.1 4.2 36 105-140 11-46 (96)
66 2dh8_A DAZ-associated protein 36.6 90 0.0031 20.5 6.4 48 112-161 24-74 (105)
67 1xn9_A 30S ribosomal protein S 36.4 1E+02 0.0034 22.3 6.1 64 98-165 10-80 (101)
68 3phx_B Ubiquitin-like protein 36.3 58 0.002 20.7 4.5 35 105-139 14-48 (79)
69 2g1d_A 30S ribosomal protein S 36.0 52 0.0018 23.7 4.5 63 99-165 11-81 (98)
70 1u6f_A Tcubp1, RNA-binding pro 35.9 66 0.0022 22.4 5.1 54 107-162 43-101 (139)
71 2f3j_A RNA and export factor b 35.9 47 0.0016 25.1 4.5 54 106-161 88-145 (177)
72 1ndd_A NEDD8, protein (ubiquit 35.8 53 0.0018 20.3 4.1 36 105-140 10-45 (76)
73 2xzm_P RPS24E; ribosome, trans 35.7 1.2E+02 0.0041 23.6 6.8 57 106-165 19-83 (149)
74 2g4b_A Splicing factor U2AF 65 35.2 1.1E+02 0.0039 21.3 7.5 56 106-163 96-154 (172)
75 3n3k_B Ubiquitin; hydrolase, p 34.4 50 0.0017 21.1 3.9 36 105-140 13-48 (85)
76 2dgv_A HnRNP M, heterogeneous 34.2 85 0.0029 20.0 5.1 48 112-161 16-64 (92)
77 1fxl_A Paraneoplastic encephal 34.0 94 0.0032 21.4 5.6 52 108-161 6-60 (167)
78 2lkz_A RNA-binding protein 5; 33.4 35 0.0012 23.3 3.1 56 107-162 12-70 (95)
79 2hzc_A Splicing factor U2AF 65 33.4 81 0.0028 19.8 4.8 49 108-159 10-67 (87)
80 1ywx_A 30S ribosomal protein S 33.3 66 0.0022 23.4 4.7 67 95-165 7-80 (102)
81 2voo_A Lupus LA protein; RNA-b 33.0 1E+02 0.0036 23.4 6.1 54 107-162 112-167 (193)
82 2dgt_A RNA-binding protein 30; 32.9 65 0.0022 20.8 4.3 49 107-162 11-61 (92)
83 4dwf_A HLA-B-associated transc 32.6 76 0.0026 20.8 4.7 36 105-140 15-50 (90)
84 3mtn_B UBA80, ubcep1, ubiquiti 32.4 65 0.0022 20.5 4.2 35 105-139 13-47 (85)
85 2dnq_A RNA-binding protein 4B; 32.1 89 0.003 20.0 4.9 43 112-161 16-58 (90)
86 3md1_A Nuclear and cytoplasmic 32.1 93 0.0032 19.3 5.1 54 108-163 5-61 (83)
87 2v94_A RPS24, 30S ribosomal pr 32.0 1.4E+02 0.0048 21.8 6.3 63 99-165 19-89 (107)
88 2adc_A Polypyrimidine tract-bi 31.9 1.2E+02 0.0042 23.0 6.4 52 106-161 34-88 (229)
89 1x5o_A RNA binding motif, sing 31.9 53 0.0018 22.1 3.9 51 109-161 30-82 (114)
90 2j8a_A Histone-lysine N-methyl 31.8 1.4E+02 0.0048 22.8 6.6 46 106-153 4-56 (136)
91 2dng_A Eukaryotic translation 31.5 51 0.0018 21.8 3.7 51 107-160 16-71 (103)
92 2yh0_A Splicing factor U2AF 65 31.0 1.5E+02 0.005 21.3 7.1 50 112-163 122-174 (198)
93 2cqi_A Nucleolysin TIAR; RNA r 30.8 1.1E+02 0.0036 20.1 5.2 54 106-161 15-71 (103)
94 2i2y_A Fusion protein consists 30.7 58 0.002 23.2 4.1 47 111-161 80-126 (150)
95 2dgp_A Bruno-like 4, RNA bindi 30.7 68 0.0023 21.2 4.2 54 107-162 14-72 (106)
96 2cqd_A RNA-binding region cont 30.6 82 0.0028 21.2 4.7 50 109-160 22-74 (116)
97 4fbj_B NEDD8; effector-HOST ta 30.5 58 0.002 21.6 3.8 36 105-140 10-45 (88)
98 1x5u_A Splicing factor 3B subu 30.5 75 0.0026 20.9 4.4 50 111-162 22-74 (105)
99 3v6c_B Ubiquitin; structural g 30.2 70 0.0024 21.2 4.2 36 105-140 27-62 (91)
100 4hcn_B Polyubiquitin, ubiquiti 30.2 58 0.002 22.1 3.8 35 105-139 32-66 (98)
101 4eew_A Large proline-rich prot 29.9 89 0.003 20.3 4.6 35 105-139 27-61 (88)
102 1sjq_A Polypyrimidine tract-bi 29.8 71 0.0024 22.6 4.4 50 108-162 20-69 (105)
103 3u5c_Y RP50, 40S ribosomal pro 29.7 1.5E+02 0.0052 22.6 6.4 62 100-165 16-85 (135)
104 1qm9_A Polypyrimidine tract-bi 29.6 62 0.0021 23.6 4.2 49 111-162 127-175 (198)
105 2rs2_A Musashi-1, RNA-binding 29.5 79 0.0027 21.5 4.5 53 108-162 29-84 (109)
106 3dbh_I NEDD8; cell cycle, acti 29.4 69 0.0024 20.6 4.0 35 105-139 22-56 (88)
107 1wh3_A 59 kDa 2'-5'-oligoadeny 29.3 68 0.0023 20.7 3.9 35 106-140 18-52 (87)
108 2ghp_A U4/U6 snRNA-associated 29.2 59 0.002 25.4 4.2 75 85-161 82-175 (292)
109 2dzi_A Ubiquitin-like protein 29.1 78 0.0027 20.0 4.1 36 105-140 17-52 (81)
110 3sde_A Paraspeckle component 1 29.0 81 0.0028 24.6 5.0 51 112-164 104-156 (261)
111 2hgn_A Heterogeneous nuclear r 28.8 17 0.00057 27.0 0.8 46 112-160 54-101 (139)
112 2jrs_A RNA-binding protein 39; 28.6 99 0.0034 21.0 4.9 50 111-162 33-85 (108)
113 2qfj_A FBP-interacting repress 28.6 1.1E+02 0.0038 22.2 5.4 54 108-163 129-185 (216)
114 1whx_A Hypothetical protein ri 28.5 82 0.0028 21.5 4.4 50 107-161 11-62 (111)
115 3zzp_A TS9, ribosomal protein 27.7 61 0.0021 22.1 3.5 23 107-129 47-69 (77)
116 2bwf_A Ubiquitin-like protein 27.4 85 0.0029 19.5 4.1 35 106-140 14-48 (77)
117 1wf0_A TDP-43, TAR DNA-binding 27.3 26 0.00088 22.7 1.5 47 109-159 10-56 (88)
118 1why_A Hypothetical protein ri 27.3 1.3E+02 0.0044 19.5 5.2 51 107-162 20-70 (97)
119 2dgs_A DAZ-associated protein 26.8 78 0.0027 20.6 3.9 47 112-160 18-67 (99)
120 1cqm_A Ribosomal protein S6; a 26.5 1.2E+02 0.0043 21.1 5.1 33 107-139 5-43 (101)
121 1b7f_A Protein (SXL-lethal pro 26.3 1.1E+02 0.0039 21.1 4.9 54 108-163 93-149 (168)
122 1yx5_B Ubiquitin; proteasome, 26.1 91 0.0031 20.9 4.2 36 105-140 10-45 (98)
123 2x1f_A MRNA 3'-END-processing 25.3 1.2E+02 0.0042 19.6 4.7 49 112-162 10-61 (96)
124 1h2v_Z 20 kDa nuclear CAP bind 24.4 1.4E+02 0.0048 21.2 5.2 56 106-163 39-99 (156)
125 2cqb_A Peptidyl-prolyl CIS-tra 23.9 79 0.0027 20.7 3.5 52 109-162 17-71 (102)
126 1sif_A Ubiquitin; hydrophobic 23.9 87 0.003 20.7 3.7 36 105-140 19-54 (88)
127 1p1t_A Cleavage stimulation fa 23.7 1.5E+02 0.0052 19.2 4.9 54 107-162 11-67 (104)
128 2uyz_B Small ubiquitin-related 23.6 1.2E+02 0.0042 19.1 4.4 35 105-139 13-47 (79)
129 2cqh_A IGF-II mRNA-binding pro 23.4 1E+02 0.0035 19.8 4.0 50 107-162 11-61 (93)
130 2klc_A Ubiquilin-1; ubiquitin- 23.4 1.4E+02 0.0046 20.5 4.8 35 106-140 35-69 (101)
131 3vdz_A Ubiquitin-40S ribosomal 23.0 1.2E+02 0.0042 21.1 4.6 36 105-140 45-80 (111)
132 2hgl_A HNRPF protein, heteroge 23.0 71 0.0024 23.3 3.4 53 106-159 44-102 (136)
133 2kxn_B Transformer-2 protein h 22.8 91 0.0031 22.0 3.9 54 107-162 49-105 (129)
134 3p5t_L Cleavage and polyadenyl 22.5 1.5E+02 0.005 19.1 4.6 52 108-160 5-60 (90)
135 3lqv_A PRE-mRNA branch site pr 22.2 1.4E+02 0.0047 20.0 4.6 51 109-161 13-63 (115)
136 1wx8_A Riken cDNA 4931431F19; 22.2 1.2E+02 0.0042 20.1 4.2 34 106-139 27-60 (96)
137 2hj8_A Interferon-induced 17 k 22.2 1.3E+02 0.0044 19.8 4.3 35 105-139 14-48 (88)
138 2ki2_A SS-DNA binding protein 21.9 1.6E+02 0.0054 18.6 5.2 54 107-163 4-60 (90)
139 3n9u_C Cleavage and polyadenyl 21.9 2E+02 0.0069 21.0 5.8 54 107-161 58-115 (156)
140 1wx7_A Ubiquilin 3; ubiquitin- 21.8 1.4E+02 0.0049 20.3 4.6 34 107-140 28-61 (106)
141 1x4h_A RNA-binding protein 28; 21.8 1.8E+02 0.0061 19.1 5.1 52 110-163 21-75 (111)
142 2l7r_A Ubiquitin-like protein 21.7 95 0.0032 20.9 3.6 35 106-140 28-62 (93)
143 3ns6_A Eukaryotic translation 21.6 79 0.0027 21.0 3.2 44 115-160 23-69 (100)
144 3ucg_A Polyadenylate-binding p 21.4 1.6E+02 0.0055 18.4 5.3 52 107-160 9-63 (89)
145 2la4_A Nuclear and cytoplasmic 21.0 1.8E+02 0.0061 18.9 5.8 52 106-162 27-80 (101)
146 2e5i_A Heterogeneous nuclear r 20.2 2.5E+02 0.0084 20.2 6.7 44 114-161 35-78 (124)
147 3pgw_S U1-70K; protein-RNA com 20.1 1.5E+02 0.005 25.8 5.3 52 108-161 106-160 (437)
No 1
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=100.00 E-value=2.9e-68 Score=424.25 Aligned_cols=151 Identities=85% Similarity=1.149 Sum_probs=121.2
Q ss_pred CCCCCCCCCCCChhH-HHHHHHHhhhcccCcccceeeeccccccCCCccCCCCCCCCCCCCCCCCCCCCccccccccccc
Q 030945 17 MAPPKGETKKADPKV-QALKTAKAVKSGRTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTT 95 (168)
Q Consensus 17 m~~k~~~~~ka~aka-kalkakkavlkg~~~~~~~k~~~s~~f~~pktl~l~r~pkyprk~~p~~~kld~~~IIk~Pl~T 95 (168)
|||+++. +++++++ |||+|+||||||+|||+++++|+|++|++|+||+++|+|+|||+|+|+||+||+|+||++|++|
T Consensus 1 m~~~~~~-~~a~aka~ka~kakkavlkg~~~~~~~k~~~s~~f~~pktl~l~r~pkyp~ks~p~~~kmd~~~IIk~PliT 79 (152)
T 3iz5_X 1 MAPKAAV-KKADGKTQQALKVAKAVKSGSIKRKSKKIRTSVTFHRPKTLKKARDPKYPRVSAPGRNKLDQYQILKYPLTT 79 (152)
T ss_dssp -------------------------------CCCHHHHHHHHHTCSSCCCCCCCCCCCCSSCCCCCCCCCCCSEEEECCS
T ss_pred CCCCCCC-cccchhhHHHHHHHHHHhccccccccccccCcccccCccccccccCCCCCcccCCCCCcCcHHHHHhhCCcC
Confidence 7887655 8899999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcCCeEEEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHHHHhhcCC
Q 030945 96 ESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 168 (168)
Q Consensus 96 Ekamk~~E~nNtlvFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p~g~KKAyV~La~d~dAlDvAnkigii 168 (168)
|+||+++|++|+|+|+||++|||+|||+|||+||||+|.+|||||+|+|||||||+|++|||||||||+||||
T Consensus 80 EKa~~~~E~~N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAnkiGii 152 (152)
T 3iz5_X 80 ESAMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVANKIGII 152 (152)
T ss_dssp HHHHHHHHHHSEEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHGGGCCC
T ss_pred HHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEcCCCCcHHHHHHhhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997
No 2
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=100.00 E-value=2.4e-66 Score=409.44 Aligned_cols=139 Identities=55% Similarity=0.829 Sum_probs=120.2
Q ss_pred hHHHHHHHHhhhcccCcccceeeeccccccCCCccCCCCCCCCCCCCCCCCCCCCccccccccccchhhhhhhhcCCeEE
Q 030945 30 KVQALKTAKAVKSGRTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLV 109 (168)
Q Consensus 30 kakalkakkavlkg~~~~~~~k~~~s~~f~~pktl~l~r~pkyprk~~p~~~kld~~~IIk~Pl~TEkamk~~E~nNtlv 109 (168)
++|||+|+||||||+|||+++++|+|++|++|+||+++|+|+|||+|+|+||+||+|+||++|++||+||+++|++|+|+
T Consensus 4 ~~ka~kakkavlkg~~~~~~~k~~~s~~f~~pktl~l~r~pkyp~ks~p~~~kld~~~IIk~PliTEKa~~~~E~~N~~v 83 (142)
T 3u5e_X 4 SAKATAAKKAVVKGTNGKKALKVRTSATFRLPKTLKLARAPKYASKAVPHYNRLDSYKVIEQPITSETAMKKVEDGNILV 83 (142)
T ss_dssp ------------------CCCCCCSCSCCCCCCCCCCCCCCSSCSSSSCCCCTTCHHHHEEEECCCHHHHHHHHHHCEEE
T ss_pred hhHHHHHHHHHhccCCcccccccccCccccCccccccccCCCCCcccCCCCCCCCHHHhhhcCCcCHHHHHHHHhCCEEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCHHHHHHHHHhHcCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHHHHhhcCC
Q 030945 110 FIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 168 (168)
Q Consensus 110 FiVd~kAnK~qIKqAVkklydV~V~kVNTli~p~g~KKAyV~La~d~dAlDvAnkigii 168 (168)
|+||++|||+|||+|||+||||+|.+|||||+|+|||||||+|++|||||||||+||||
T Consensus 84 F~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAnkigii 142 (142)
T 3u5e_X 84 FQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIANRIGYI 142 (142)
T ss_dssp EEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCEEEEEEECTTCCHHHHHHHHTCC
T ss_pred EEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCceEEEEEeCCCCcHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999999999999997
No 3
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=100.00 E-value=4.3e-65 Score=405.16 Aligned_cols=143 Identities=47% Similarity=0.683 Sum_probs=117.3
Q ss_pred CCCChhHHHHHHHHhhhcccCcccceeeeccccccCCCccCCCCCCCCCCCCCCCCC---CCCccccccccccchhhhhh
Q 030945 25 KKADPKVQALKTAKAVKSGRTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRN---KLDHYQILKYPLTTESAMKK 101 (168)
Q Consensus 25 ~ka~akakalkakkavlkg~~~~~~~k~~~s~~f~~pktl~l~r~pkyprk~~p~~~---kld~~~IIk~Pl~TEkamk~ 101 (168)
.++++++|||+|+||||||+| |+++++|+|++|+||+||+|+|+|+|||+|+|+|| +||+|+||++|++||+||++
T Consensus 5 ~~~~ak~ka~kakkavlkg~~-~~~~k~~~s~~f~~pktl~l~r~pkyp~ks~p~~~~~~kld~y~IIk~PliTEKa~~~ 83 (150)
T 4a17_R 5 NKTQAVNKAKNTAKVAKKGSS-ITKHKTYTGVRFFRPKTLQLAKAPKYSRTVRAHLKVSGHLDNHSVVKTPLTTEKAMKK 83 (150)
T ss_dssp --------------------------CCCSSSBCCCCCCCCCCCCCSSCSSHHHHTTCCCCCCHHHHEEEECCSHHHHHH
T ss_pred cchhHHHHHHHHHHHHhccCC-CCcceecCCccccCccccccccCCCCCCcccCCCCccccCCHHHhhhccccCHHHHHH
Confidence 356778999999999999998 57789999999999999999999999999999999 99999999999999999999
Q ss_pred hhcCCeEEEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHHHHhhcCC
Q 030945 102 IEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 168 (168)
Q Consensus 102 ~E~nNtlvFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p~g~KKAyV~La~d~dAlDvAnkigii 168 (168)
+|++|+|+|+||++|||+|||+|||+||||+|.+|||+|+|+|||||||+|++|||||||||+||||
T Consensus 84 ~E~~N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~KKAyV~La~~~dAldvAnkiGii 150 (150)
T 4a17_R 84 MEDENTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNKKAYIRLAADSDSLTLANKIGLI 150 (150)
T ss_dssp HHHSSEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEECSSSCHHHHHHHHTCC
T ss_pred HHhCCEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcEEEEEEcCCCCcHHHHHHhhccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999997
No 4
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=4.4e-64 Score=401.65 Aligned_cols=152 Identities=72% Similarity=1.015 Sum_probs=77.7
Q ss_pred CCCCCC----CCCCCChhHHHHHHHHhhhcccCcccceeeeccccccCCCccCCCCCCCCCCCCCCCCCCCCcccccccc
Q 030945 17 MAPPKG----ETKKADPKVQALKTAKAVKSGRTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYP 92 (168)
Q Consensus 17 m~~k~~----~~~ka~akakalkakkavlkg~~~~~~~k~~~s~~f~~pktl~l~r~pkyprk~~p~~~kld~~~IIk~P 92 (168)
|+++++ ++|++++++||++|+|+||+|+|+|+.+|+|+|++|++|+||+++|+|+|||+|.|+||+||+|+||++|
T Consensus 1 m~~k~~k~~~~~p~~~~~~ka~kakk~v~kg~~~~~~~k~~~s~~f~~pktl~l~r~pkyprks~p~~~kmd~~~iIk~P 80 (156)
T 2zkr_s 1 MAPKAKKEAPAPPKAEAKAKALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFP 80 (156)
T ss_dssp ---------------------------------------------------------------------------CEEEE
T ss_pred CCCcccccCCCccchhHHHHHHHHHHHHHhccCCccceeeccccccCCCcccccccCCCCCcccCCCcccCCHHHhHhcc
Confidence 555433 4678899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhhhcCCeEEEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHHHHhhcCC
Q 030945 93 LTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 168 (168)
Q Consensus 93 l~TEkamk~~E~nNtlvFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p~g~KKAyV~La~d~dAlDvAnkigii 168 (168)
++||+||+++|+||+|+|+||++|||+|||+|||+||||+|.+|||+|+++|||||||+|++||+|||+||+||||
T Consensus 81 liTEKa~~~~E~~n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~~~KKAiVtL~~g~~aid~~~kiGii 156 (156)
T 2zkr_s 81 LTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 156 (156)
T ss_dssp CCSHHHHHHHHHHCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSSSCEEEEEEECTTSCHHHHHHHC---
T ss_pred cccHHHHHHHHhCCcEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEECCCCcHHHHHHhccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999997
No 5
>3bbo_V Ribosomal protein L23; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=2.6e-46 Score=306.92 Aligned_cols=111 Identities=50% Similarity=0.813 Sum_probs=84.3
Q ss_pred eeccccccCCCccCCCCCCCCCCCCCCCCCCCCccccccccccchhhhhhhhcCCeEEEEEecCCCHHHHHHHHHhHcCC
Q 030945 52 IRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDI 131 (168)
Q Consensus 52 ~~~s~~f~~pktl~l~r~pkyprk~~p~~~kld~~~IIk~Pl~TEkamk~~E~nNtlvFiVd~kAnK~qIKqAVkklydV 131 (168)
.++|++|+||+||+++|+|+|||+ +||+|+||++|++||+||+++|++|+|+|+||++|||+|||+|||++|||
T Consensus 84 ~~~s~~F~rPktl~l~r~pKyprk------kMd~ydIIk~PvITEKAmkliE~nNkyvF~Vd~kANK~QIKqAVEkLFdV 157 (198)
T 3bbo_V 84 TTEEAATSQPKTSKKAKKLKYPRR------ILDVYQILQSPIITEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGV 157 (198)
T ss_dssp --------------------------------CCCCCBCCCCCCHHHHHHHHTSCEECCEECTTCCHHHHHHTTTTTSCC
T ss_pred cccceeeCCCcccccccCCCCccc------cCCHhheeeccccCHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHhCC
Confidence 467999999999999999999998 89999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEEeeCCCCeeeEEEEcCCCCcHHHHHHhhcCC
Q 030945 132 QAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 168 (168)
Q Consensus 132 ~V~kVNTli~p~g~KKAyV~La~d~dAlDvAnkigii 168 (168)
+|.+|||+|+++|||||||+|++|++|||+||+||||
T Consensus 158 KV~kVNTln~~gg~KKAyVtLaeG~~AID~anKIGii 194 (198)
T 3bbo_V 158 KVRKVNTLIRPDGTKKAYIMLNKEYNASELAKKIGIF 194 (198)
T ss_dssp CEEECCCEEETTTEEECCEEECTTTCTTTHHHHCCCC
T ss_pred ceeEEEeeEcCCCeEEEEEEeCCCCchHHHHHhcccc
Confidence 9999999999999999999999999999999999997
No 6
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=5.6e-42 Score=250.62 Aligned_cols=86 Identities=47% Similarity=0.804 Sum_probs=83.3
Q ss_pred CCccccccccccchhhhhhhhcCCeEEEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHHH
Q 030945 83 LDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVA 162 (168)
Q Consensus 83 ld~~~IIk~Pl~TEkamk~~E~nNtlvFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p~g~KKAyV~La~d~dAlDvA 162 (168)
||+|+||++|++||+||+++|++|+|+|+||++|||+|||+|||++|||+|.+|||+++|+|||||||+|++||+|+|||
T Consensus 1 md~~~iIk~P~iTEKa~~~~e~~n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva 80 (86)
T 3j21_T 1 MDPYKVIIRPVVTEKAISLIEKENKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVA 80 (86)
T ss_dssp --CCCCEEECCCSHHHHHHHHTSCEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHH
T ss_pred CChHHhhhccccCHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCC
Q 030945 163 NKIGII 168 (168)
Q Consensus 163 nkigii 168 (168)
||||||
T Consensus 81 ~kigi~ 86 (86)
T 3j21_T 81 ARLGLF 86 (86)
T ss_dssp HHSSCC
T ss_pred HhhccC
Confidence 999997
No 7
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=100.00 E-value=8.5e-39 Score=233.24 Aligned_cols=84 Identities=44% Similarity=0.659 Sum_probs=80.1
Q ss_pred ccccccccccchhhhhhhhcCCeEEEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHHHHh
Q 030945 85 HYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANK 164 (168)
Q Consensus 85 ~~~IIk~Pl~TEkamk~~E~nNtlvFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p~g~KKAyV~La~d~dAlDvAnk 164 (168)
||+||++|++||+||+++|++|+|+|+||++|||+|||+|||++|||+|.+|||+++|+|||||||+|++|++|||+|||
T Consensus 2 ~~~iIk~P~iTEKa~~~~e~~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~KKA~VtL~~g~~aid~~~k 81 (85)
T 1vq8_S 2 SWDVIKHPHVTEKAMNDMDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQEVASR 81 (85)
T ss_dssp CCCSEEEECCSHHHHHHHHHSCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHTT
T ss_pred CcceeeccccCHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCceEEEEEECCCCcHHHHHHh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCC
Q 030945 165 IGII 168 (168)
Q Consensus 165 igii 168 (168)
||||
T Consensus 82 ig~~ 85 (85)
T 1vq8_S 82 IGVF 85 (85)
T ss_dssp C---
T ss_pred hCCC
Confidence 9996
No 8
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=99.97 E-value=1.9e-32 Score=202.13 Aligned_cols=78 Identities=28% Similarity=0.463 Sum_probs=74.3
Q ss_pred CccccccccccchhhhhhhhcCCeEEEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCC-------------CCeeeEEE
Q 030945 84 DHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRP-------------DGTKKAYV 150 (168)
Q Consensus 84 d~~~IIk~Pl~TEkamk~~E~nNtlvFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p-------------~g~KKAyV 150 (168)
|+|+||++|++||+||.++|+ |+|+|+||++|||+|||+|||++|||+|.+|||+|+| +|||||||
T Consensus 1 ~~~~iI~~P~iTEKa~~~~e~-n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK~kR~g~~~G~~~~~KKA~V 79 (92)
T 3tve_T 1 TAYDVILAPVLSEKAYAGFAE-GKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKKKRLGRYLGKRPDRKKAIV 79 (92)
T ss_dssp CHHHHEEEECCSHHHHTTTTT-TEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCCEEESSSCEEECCCEEEEEE
T ss_pred ChhheecccccCHHHHHHhhC-CEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCceeeeccccccCCCceEEEE
Confidence 789999999999999999998 9999999999999999999999999999999999999 58999999
Q ss_pred EcCCCCcHHHHHH
Q 030945 151 RLTPDSDALDVAN 163 (168)
Q Consensus 151 ~La~d~dAlDvAn 163 (168)
+|++| ++||+.+
T Consensus 80 tL~~g-~~Id~f~ 91 (92)
T 3tve_T 80 QVAPG-QKIEALE 91 (92)
T ss_dssp EECTT-CCCTTTC
T ss_pred EcCCC-CcccCCC
Confidence 99999 6698753
No 9
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=99.97 E-value=6.5e-32 Score=200.33 Aligned_cols=81 Identities=30% Similarity=0.499 Sum_probs=75.9
Q ss_pred CCccccccccccchhhhhhhhcCCeEEEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCCC-------------CeeeEE
Q 030945 83 LDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-------------GTKKAY 149 (168)
Q Consensus 83 ld~~~IIk~Pl~TEkamk~~E~nNtlvFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p~-------------g~KKAy 149 (168)
||+|+||++|++||+||.++|+|+ |+|+||++|||+|||+|||++|||+|.+|||+++|+ +|||||
T Consensus 1 m~~~~iI~~PviTEKs~~~~e~n~-y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~~~gK~kR~g~~~G~~~~~KKAi 79 (95)
T 2zjr_Q 1 MSHYDILQAPVISEKAYSAMERGV-YSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGKRKRVGRFIGQRNDRKKAI 79 (95)
T ss_dssp -CCSSSCCEECCTHHHHHHHTTTC-CEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCCCCCSSSSCCCCCCCBEEEE
T ss_pred CChHhceeccccCHHHHHHHHCCE-EEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEEeCCccceeccccccCCCcEEEE
Confidence 689999999999999999999855 999999999999999999999999999999999997 799999
Q ss_pred EEcCCCCcHHHHHHhh
Q 030945 150 VRLTPDSDALDVANKI 165 (168)
Q Consensus 150 V~La~d~dAlDvAnki 165 (168)
|+|++|++ ||+++.+
T Consensus 80 VtL~~g~~-id~~~~~ 94 (95)
T 2zjr_Q 80 VRLAEGQS-IEALAGQ 94 (95)
T ss_dssp EECCSSCC-CSSTTTC
T ss_pred EEeCCCCe-eecccCC
Confidence 99999999 9998753
No 10
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=99.97 E-value=2.4e-31 Score=196.61 Aligned_cols=76 Identities=34% Similarity=0.499 Sum_probs=72.8
Q ss_pred CCCccccccccccchhhhhhhhcCCeEEEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCC-------------CCeeeE
Q 030945 82 KLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRP-------------DGTKKA 148 (168)
Q Consensus 82 kld~~~IIk~Pl~TEkamk~~E~nNtlvFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p-------------~g~KKA 148 (168)
..++|+||++|++||+||.++|++|+|+|+||++|||+|||+|||++|||+|.+|||+++| +|||||
T Consensus 4 ~~~~~~iIk~P~iTEKa~~~~e~~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK~kR~g~~~G~~~~~KKA 83 (93)
T 3r8s_T 4 EERLLKVLRAPHVSEKASTAMEKSNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKA 83 (93)
T ss_dssp HHHHHHHEEEECCSHHHHHHHHTTSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCCBCCSSSSCCBCCCEEEE
T ss_pred hhhHHhhhhccccCHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCceeeeCCccccCCCcEEE
Confidence 4578999999999999999999999999999999999999999999999999999999988 589999
Q ss_pred EEEcCCCCc
Q 030945 149 YVRLTPDSD 157 (168)
Q Consensus 149 yV~La~d~d 157 (168)
||+|++|++
T Consensus 84 iVtL~~g~~ 92 (93)
T 3r8s_T 84 YVTLKEGQN 92 (93)
T ss_dssp EEECCSCCC
T ss_pred EEEcCCcCC
Confidence 999999986
No 11
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.82 E-value=12 Score=25.06 Aligned_cols=54 Identities=13% Similarity=0.206 Sum_probs=38.5
Q ss_pred eEEEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCCCCee--eEEEEcCCCCcHHHH
Q 030945 107 TLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTK--KAYVRLTPDSDALDV 161 (168)
Q Consensus 107 tlvFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p~g~K--KAyV~La~d~dAlDv 161 (168)
-+|--++...+..+|++.+...|| .|..|..+..+.|.- -|||.+....+|...
T Consensus 12 l~V~nLp~~~t~~~l~~~F~~~~G-~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A 67 (104)
T 2dhg_A 12 LFVGDLTPDVDDGMLYEFFVKVYP-SCRGGKVVLDQTGVSKGYGFVKFTDELEQKRA 67 (104)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHCT-TEEEEEEEECTTCCEEEEEEEEESCHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHHhCC-CeEEEEEEECCCCCccceEEEEECCHHHHHHH
Confidence 344446678999999999999777 467777766555533 489999876665443
No 12
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=67.21 E-value=17 Score=25.46 Aligned_cols=53 Identities=15% Similarity=0.122 Sum_probs=38.8
Q ss_pred EEEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCCCCee--eEEEEcCCCCcHHHHH
Q 030945 108 LVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTK--KAYVRLTPDSDALDVA 162 (168)
Q Consensus 108 lvFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p~g~K--KAyV~La~d~dAlDvA 162 (168)
+|--++...+..+|++.++. || .|..|..+..++|.- -|||++....+|....
T Consensus 4 ~V~nlp~~~t~~~l~~~f~~-~G-~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~ 58 (166)
T 3md3_A 4 YVGNLDKAITEDILKQYFQV-GG-PIANIKIMIDKNNKNVNYAFVEYHQSHDANIAL 58 (166)
T ss_dssp EEEEEETTCCHHHHHHHHGG-GS-CEEEEEEECCCC-CCEEEEEEEESSHHHHHHHH
T ss_pred EECCCCCcCCHHHHHHHHHh-cC-CeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHH
Confidence 45567889999999999986 56 578888877665543 4999998776655443
No 13
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=65.44 E-value=8.9 Score=28.50 Aligned_cols=56 Identities=13% Similarity=0.108 Sum_probs=41.8
Q ss_pred CCeEEEEE--ecC-CCHHHHHHHHHhHcCCceeeEEEeeCCCCeeeEEEEcCC-CCcHHHHHHhh
Q 030945 105 NNTLVFIV--DIR-ADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTP-DSDALDVANKI 165 (168)
Q Consensus 105 nNtlvFiV--d~k-AnK~qIKqAVkklydV~V~kVNTli~p~g~KKAyV~La~-d~dAlDvAnki 165 (168)
.+.++|+- +.. .++.+|+.+|+. || +|..|.... |..-+||++.. ..+|.+.+.++
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~-~G-~V~~Vd~~~---g~~tgfVrf~~~~~~A~~av~~l 76 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSN-HG-EIKWIDFVR---GAKEGIILFKEKAKEALGKAKDA 76 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCS-SC-CEEEEECCT---TCSEEEEEESSCHHHHHHHHHHT
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHh-cC-CEEEEEEec---CCCEEEEEECCChHHHHHHHHHh
Confidence 36777776 556 889999999988 77 677776543 44469999998 56778777665
No 14
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=63.38 E-value=26 Score=22.79 Aligned_cols=52 Identities=12% Similarity=0.082 Sum_probs=36.9
Q ss_pred EEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCCCCe--eeEEEEcCCCCcHHHHH
Q 030945 109 VFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGT--KKAYVRLTPDSDALDVA 162 (168)
Q Consensus 109 vFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p~g~--KKAyV~La~d~dAlDvA 162 (168)
|--++...+..+|++.++. || .|..|.....++|. --|||.+....+|....
T Consensus 21 v~nlp~~~~~~~l~~~F~~-~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~ 74 (95)
T 2ywk_A 21 VGNLEARVREEILYELFLQ-AG-PLTKVTICKDREGKPKSFGFVCFKHPESVSYAI 74 (95)
T ss_dssp EECCCTTCCHHHHHHHHGG-GS-CEEEEEEEECTTSCEEEEEEEEESSTHHHHHHH
T ss_pred EECCCCCCCHHHHHHHHHh-cC-CEEEEEEEECCCCCCceEEEEEECCHHHHHHHH
Confidence 3335668999999999987 55 57777776666553 25999998777665443
No 15
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.40 E-value=17 Score=24.05 Aligned_cols=54 Identities=17% Similarity=0.247 Sum_probs=37.1
Q ss_pred eEEEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCCCCe--eeEEEEcCCCCcHHHHH
Q 030945 107 TLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGT--KKAYVRLTPDSDALDVA 162 (168)
Q Consensus 107 tlvFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p~g~--KKAyV~La~d~dAlDvA 162 (168)
-+|--++...+..+|++.++. || .|..|.....+.|. --|||.+....+|....
T Consensus 20 l~v~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~ 75 (100)
T 2do4_A 20 LFISGLPFSCTKEELEEICKA-HG-TVKDLRLVTNRAGKPKGLAYVEYENESQASQAV 75 (100)
T ss_dssp EEEESCCTTCCHHHHHHHHTT-TS-CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-CC-CeEEEEEEECCCCCEEeEEEEEECCHHHHHHHH
Confidence 333445668999999999987 55 47777776655543 35999998766655443
No 16
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=58.07 E-value=32 Score=22.70 Aligned_cols=51 Identities=10% Similarity=0.166 Sum_probs=35.1
Q ss_pred CeEEEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHH
Q 030945 106 NTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDV 161 (168)
Q Consensus 106 NtlvFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p~g~KKAyV~La~d~dAlDv 161 (168)
++-+|+-+...+..+|++.++. || .|..|.. ....|+ |||.+....+|...
T Consensus 15 ~~~l~V~n~~~t~~~l~~~F~~-~G-~i~~v~i-~~~~g~--afV~f~~~~~a~~A 65 (97)
T 1x5p_A 15 GNTLYVYGEDMTPTLLRGAFSP-FG-NIIDLSM-DPPRNC--AFVTYEKMESADQA 65 (97)
T ss_dssp CSEEEEECSSCCHHHHHHHHTT-TS-CEEEEEE-ETTTTE--EEEEESSHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHhh-CC-CEEEEEe-cCCCCE--EEEEECCHHHHHHH
Confidence 3445777778999999998877 45 4556654 355565 99999866555443
No 17
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.77 E-value=23 Score=23.92 Aligned_cols=54 Identities=19% Similarity=0.228 Sum_probs=37.2
Q ss_pred eEEEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCCCCe--eeEEEEcCCCCcHHHHH
Q 030945 107 TLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGT--KKAYVRLTPDSDALDVA 162 (168)
Q Consensus 107 tlvFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p~g~--KKAyV~La~d~dAlDvA 162 (168)
-+|--++...+..+|++.+.. || .|..|..+..++|. --|||.+....+|....
T Consensus 18 l~V~nlp~~~~~~~l~~~f~~-~G-~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~ 73 (114)
T 2do0_A 18 VFVANLDYKVGWKKLKEVFSM-AG-VVVRADILEDKDGKSRGIGTVTFEQSIEAVQAI 73 (114)
T ss_dssp EEEESCCTTCCHHHHHHHHTT-TS-CEEEEEEEECTTCSEEEEEEEEESSHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEECCCCCeeeEEEEEECCHHHHHHHH
Confidence 344445678999999998886 45 67777777666553 25899998766655443
No 18
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.67 E-value=19 Score=25.26 Aligned_cols=45 Identities=18% Similarity=0.108 Sum_probs=33.4
Q ss_pred cCCCHHHHHHHHHhHcCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHHH
Q 030945 114 IRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVA 162 (168)
Q Consensus 114 ~kAnK~qIKqAVkklydV~V~kVNTli~p~g~KKAyV~La~d~dAlDvA 162 (168)
..++..+|++.+.+ || +|..|..+-++.|+ |||.+....+|.+..
T Consensus 27 ~~~te~~L~~~F~~-~G-~V~~v~i~~~~rGf--aFVeF~~~~~A~~Ai 71 (100)
T 2d9o_A 27 GGYSKDVLLRLLQK-YG-EVLNLVLSSKKPGT--AVVEFATVKAAELAV 71 (100)
T ss_dssp CSCCHHHHHHHHHT-TS-CEEEEEEESSSSSE--EEEEESCHHHHHHHH
T ss_pred CCCCHHHHHHHHHh-cC-CEEEEEEccCCCCE--EEEEECCHHHHHHHH
Confidence 56899999999987 56 57777766555665 999998776665543
No 19
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=53.82 E-value=29 Score=24.48 Aligned_cols=55 Identities=16% Similarity=0.312 Sum_probs=39.6
Q ss_pred CeEEEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCCCCeee--EEEEcCCCCcHHHHH
Q 030945 106 NTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKK--AYVRLTPDSDALDVA 162 (168)
Q Consensus 106 NtlvFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p~g~KK--AyV~La~d~dAlDvA 162 (168)
+-++--++...+..+|++.++. ||- |..|..+..++|.-+ |||++....+|....
T Consensus 97 ~l~v~nl~~~~t~~~l~~~F~~-~G~-i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~ 153 (175)
T 3nmr_A 97 KLFIGMISKKCTENDIRVMFSS-FGQ-IEECRILRGPDGLSRGCAFVTFTTRAMAQTAI 153 (175)
T ss_dssp EEEEESCCTTCCHHHHHHHHGG-GSC-EEEEEEEECTTSCEEEEEEEEESSHHHHHHHH
T ss_pred eEEEcCCCCcCCHHHHHHHHHh-CCC-EEEEEEEECCCCCEEEEEEEEECCHHHHHHHH
Confidence 3444556778999999999987 553 778887777776544 999998776655433
No 20
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.25 E-value=44 Score=21.73 Aligned_cols=53 Identities=4% Similarity=0.002 Sum_probs=36.1
Q ss_pred CeEEEEEecCCCHHHHHHHHHhHcCCceeeEE-EeeCCCCeeeEEEEcCCCCcHHHH
Q 030945 106 NTLVFIVDIRADKKKIKDAVKKMYDIQAKKVN-TLIRPDGTKKAYVRLTPDSDALDV 161 (168)
Q Consensus 106 NtlvFiVd~kAnK~qIKqAVkklydV~V~kVN-Tli~p~g~KKAyV~La~d~dAlDv 161 (168)
.-+|--++...+..+|++.+... | .|..|. .+..+.... |||.+....+|...
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~-G-~v~~~~~i~~~~~~~~-afV~f~~~~~a~~A 70 (96)
T 2e44_A 17 KLQIRNIPPHLQWEVLDSLLVQY-G-VVESCEQVNTDSETAV-VNVTYSSKDQARQA 70 (96)
T ss_dssp CEEEEEECSSSCHHHHHHHHHHH-S-CEEEEEEECCSSSSEE-EEEEESSHHHHHHH
T ss_pred EEEEEcCCCCCCHHHHHHHHHhc-C-CeEEEEEeecCCCCCE-EEEEECCHHHHHHH
Confidence 46667778899999999999874 5 366664 333333333 99999876665443
No 21
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=52.94 E-value=25 Score=25.52 Aligned_cols=52 Identities=4% Similarity=0.068 Sum_probs=36.3
Q ss_pred eEEEE----EecCCCHHHHHHHHHhHcCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHHHH
Q 030945 107 TLVFI----VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVAN 163 (168)
Q Consensus 107 tlvFi----Vd~kAnK~qIKqAVkklydV~V~kVNTli~p~g~KKAyV~La~d~dAlDvAn 163 (168)
.-+|+ .+...+..++++.+++ || .|..|... ...| =|||++....||.+...
T Consensus 26 ~~L~V~Ng~L~~~~te~~L~~~F~~-fG-~v~~v~i~-~~rg--faFV~f~~~~~A~~Ai~ 81 (114)
T 2cq2_A 26 QSLVVANGGLGNGVSRNQLLPVLEK-CG-LVDALLMP-PNKP--YSFARYRTTEESKRAYV 81 (114)
T ss_dssp SEEEEETCTGGGTCCHHHHHHHHHH-HS-CEEEEECC-TTCS--CEEEEESSHHHHHHHHH
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHh-cC-CeEEEEEe-CCCC--EEEEEECCHHHHHHHHH
Confidence 33566 4568999999999987 68 67777543 2224 49999997777665443
No 22
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=52.06 E-value=9.3 Score=25.57 Aligned_cols=51 Identities=20% Similarity=0.274 Sum_probs=35.8
Q ss_pred EEEecCCCHHHHHHHHHhHcCCceeeEEEeeCCC-Cee--eEEEEcCCCCcHHHH
Q 030945 110 FIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-GTK--KAYVRLTPDSDALDV 161 (168)
Q Consensus 110 FiVd~kAnK~qIKqAVkklydV~V~kVNTli~p~-g~K--KAyV~La~d~dAlDv 161 (168)
--.+..++..+|++.++. ||..|..|..+..+. |.- =|||.+....+|...
T Consensus 7 ~nLp~~~te~~l~~~F~~-~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~A 60 (91)
T 2lxi_A 7 RMLPQAATEDDIRGQLQS-HGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRW 60 (91)
T ss_dssp ETCCSSCCHHHHHHHHHH-HTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHHH-hCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHH
Confidence 345678999999999987 677777777654332 221 399999876665543
No 23
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=51.48 E-value=13 Score=24.83 Aligned_cols=50 Identities=14% Similarity=0.076 Sum_probs=37.4
Q ss_pred CeEEEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCCCCeeeEEEEcCCCCcHH
Q 030945 106 NTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDAL 159 (168)
Q Consensus 106 NtlvFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p~g~KKAyV~La~d~dAl 159 (168)
+-+|--....++..++++.+++ || .|..|..+....|+ |||.+....+|.
T Consensus 13 ~l~V~~Lp~~~te~~L~~~F~~-~G-~i~~v~i~~~srGf--aFV~F~~~~~A~ 62 (89)
T 3d2w_A 13 KVFVGRCTEDMTAEELQQFFCQ-YG-EVVDVFIPKPFRAF--AFVTFADDKVAQ 62 (89)
T ss_dssp EEEEESCCTTCCHHHHHHHHTT-TS-CEEEEECCSSCCSE--EEEEESCHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHhc-cC-CEEEEEEeeCCCCE--EEEEECCHHHHH
Confidence 4455557778999999999987 56 47778776655675 999998766554
No 24
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=50.85 E-value=25 Score=23.08 Aligned_cols=54 Identities=11% Similarity=0.210 Sum_probs=35.3
Q ss_pred eEEEE--EecCCCHHHHHHHHHhHcCCceeeEEEeeCC-CCe--eeEEEEcCCCCcHHHHH
Q 030945 107 TLVFI--VDIRADKKKIKDAVKKMYDIQAKKVNTLIRP-DGT--KKAYVRLTPDSDALDVA 162 (168)
Q Consensus 107 tlvFi--Vd~kAnK~qIKqAVkklydV~V~kVNTli~p-~g~--KKAyV~La~d~dAlDvA 162 (168)
+-+|+ ++...+..+|++.+.. || .|..|..+..+ .|. --|||++....+|....
T Consensus 9 ~~l~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 67 (99)
T 1whw_A 9 GRLFVRNLSYTSSEEDLEKLFSA-YG-PLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAY 67 (99)
T ss_dssp EEEEEECCCTTCCHHHHHHHHHT-TS-CEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHh-cC-CEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHH
Confidence 33444 5668999999999987 45 56666655443 222 24999998766655443
No 25
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=50.60 E-value=31 Score=22.80 Aligned_cols=49 Identities=24% Similarity=0.232 Sum_probs=33.7
Q ss_pred EEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHH
Q 030945 109 VFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDV 161 (168)
Q Consensus 109 vFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p~g~KKAyV~La~d~dAlDv 161 (168)
|--++...+..+|++.++.. | .|..|.....+.| -|||.+....+|...
T Consensus 5 V~nLp~~~t~~~l~~~F~~~-G-~i~~v~i~~~~~g--~afV~f~~~~~a~~A 53 (101)
T 2hvz_A 5 VGNLGTGAGKGELERAFSYY-G-PLRTVWIARNPPG--FAFVEFEDPRDAEDA 53 (101)
T ss_dssp EECCCSSCSHHHHHHHHHHH-C-CCSEEEEESSSSS--EEEEECSSHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHhc-C-CeEEEEEeeCCCC--EEEEEECCHHHHHHH
Confidence 33456788999999999885 4 4566665443345 599999876665543
No 26
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=50.19 E-value=31 Score=22.86 Aligned_cols=53 Identities=15% Similarity=0.396 Sum_probs=36.7
Q ss_pred eEEEE--EecCCCHHHHHHHHHhHcCCceeeEEEeeCCCCee--eEEEEcCCCCcHHHH
Q 030945 107 TLVFI--VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTK--KAYVRLTPDSDALDV 161 (168)
Q Consensus 107 tlvFi--Vd~kAnK~qIKqAVkklydV~V~kVNTli~p~g~K--KAyV~La~d~dAlDv 161 (168)
+-+|+ ++...+..+|++.+.. || .|..|..+..++|.- -|||.+....+|...
T Consensus 16 ~~l~v~nLp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A 72 (105)
T 2dnh_A 16 RKLFVGMLNKQQSEEDVLRLFQP-FG-VIDECTVLRGPDGSSKGCAFVKFSSHTEAQAA 72 (105)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTT-TS-CEEEEEEEECSSSCEEEEEEEEESSHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEECCCCCcCcEEEEEeCCHHHHHHH
Confidence 33454 5668899999998886 45 377787776666533 499999876665443
No 27
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=49.47 E-value=48 Score=21.10 Aligned_cols=51 Identities=18% Similarity=0.283 Sum_probs=35.5
Q ss_pred EEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCCC-Cee--eEEEEcCCCCcHHHH
Q 030945 109 VFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-GTK--KAYVRLTPDSDALDV 161 (168)
Q Consensus 109 vFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p~-g~K--KAyV~La~d~dAlDv 161 (168)
|--++...+..+|++.++. || .|..|..+..++ |.- =|||++....+|...
T Consensus 16 V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A 69 (87)
T 3s7r_A 16 VGGLSWDTSKKDLKDYFTK-FG-EVVDCTIKMDPNTGRSRGFGFILFKDAASVEKV 69 (87)
T ss_dssp EECCCTTCCHHHHHHHHTT-TS-CEEEEEEEECTTTCCEEEEEEEEESSTHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHh-CC-CEEEEEEeecCCCCccccEEEEEECCHHHHHHH
Confidence 3346678999999999976 55 677887766543 332 399999877665443
No 28
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=49.46 E-value=15 Score=25.16 Aligned_cols=55 Identities=11% Similarity=0.241 Sum_probs=36.4
Q ss_pred eEEEE--EecCCCHHHHHHHHHhHcCCceeeEEEeeCCCC-eeeEEEEcCCCCcHHHHHH
Q 030945 107 TLVFI--VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDG-TKKAYVRLTPDSDALDVAN 163 (168)
Q Consensus 107 tlvFi--Vd~kAnK~qIKqAVkklydV~V~kVNTli~p~g-~KKAyV~La~d~dAlDvAn 163 (168)
.-+|+ ++...+..+|++.++.. | .|..|.....+++ .--|||++....+|.....
T Consensus 30 ~~l~V~nLp~~~te~~l~~~F~~~-G-~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~ 87 (109)
T 2err_A 30 KRLHVSNIPFRFRDPDLRQMFGQF-G-KILDVEIIFNERGSKGFGFVTFENSADADRARE 87 (109)
T ss_dssp CEEEEESCCTTCCHHHHHHHGGGT-C-CCSCEEECCBTTBCTTEEEEECCCSHHHHHHHH
T ss_pred CEEEEECCCCcCCHHHHHHHHHhc-C-CEEEEEEEECCCCCceEEEEEECCHHHHHHHHH
Confidence 44455 45688999999999874 4 4566666544432 2259999998777655433
No 29
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=48.84 E-value=26 Score=24.26 Aligned_cols=52 Identities=17% Similarity=0.191 Sum_probs=36.5
Q ss_pred CCeEEEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHHH
Q 030945 105 NNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVA 162 (168)
Q Consensus 105 nNtlvFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p~g~KKAyV~La~d~dAlDvA 162 (168)
...+|--++..++..+|++.++. || +|..|..+ .+|+ |||.+....+|....
T Consensus 17 ~~l~V~nLp~~~t~~~l~~~F~~-~G-~v~~~~i~--~~g~--afV~f~~~~~a~~Ai 68 (115)
T 3beg_B 17 NRVVVSGLPPSGSWQDLKDHMRE-AG-DVCYADVY--RDGT--GVVEFVRKEDMTYAV 68 (115)
T ss_dssp CCEEEEECCSSCCTTHHHHHHGG-GS-CEEEEEEC--TTSE--EEEEESSHHHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEe--cCCE--EEEEECCHHHHHHHH
Confidence 34566667788999999999886 45 56666654 3364 999998766655443
No 30
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=48.24 E-value=46 Score=26.18 Aligned_cols=55 Identities=9% Similarity=0.161 Sum_probs=39.8
Q ss_pred eEEEEEecCCCHHHHHHHHHhHcCC-ceeeEEEeeCC-CCee--eEEEEcCCCCcHHHHH
Q 030945 107 TLVFIVDIRADKKKIKDAVKKMYDI-QAKKVNTLIRP-DGTK--KAYVRLTPDSDALDVA 162 (168)
Q Consensus 107 tlvFiVd~kAnK~qIKqAVkklydV-~V~kVNTli~p-~g~K--KAyV~La~d~dAlDvA 162 (168)
.||--++..++..+|++.|+. ||+ +|..|..+..+ .|.- =|||.+....+|....
T Consensus 71 lfVgnL~~~~te~~L~~~F~~-~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai 129 (229)
T 3q2s_C 71 LYIGNLTWWTTDEDLTEAVHS-LGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLM 129 (229)
T ss_dssp EEEESCCTTCCHHHHHHHHHT-TTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHH-HCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHH
Confidence 444456678999999999976 676 88898887654 3332 3999999877665543
No 31
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=47.03 E-value=42 Score=21.61 Aligned_cols=54 Identities=17% Similarity=0.260 Sum_probs=36.9
Q ss_pred eEEEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCCC-Ce--eeEEEEcCCCCcHHHHH
Q 030945 107 TLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-GT--KKAYVRLTPDSDALDVA 162 (168)
Q Consensus 107 tlvFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p~-g~--KKAyV~La~d~dAlDvA 162 (168)
-+|--++...+..+|++.++. || .|..|..+..+. |. --|||++....+|....
T Consensus 18 l~v~nlp~~~t~~~l~~~f~~-~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 74 (95)
T 2cqc_A 18 LGVFGLSLYTTERDLREVFSK-YG-PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAK 74 (95)
T ss_dssp EEEESCCSSCCHHHHHHHHHT-TS-CEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHh-cC-CeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHH
Confidence 344446678999999999988 55 477777766544 22 25999998766654433
No 32
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=46.92 E-value=33 Score=21.68 Aligned_cols=52 Identities=15% Similarity=0.137 Sum_probs=34.5
Q ss_pred EEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCC-CCee--eEEEEcCCCCcHHHHH
Q 030945 109 VFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRP-DGTK--KAYVRLTPDSDALDVA 162 (168)
Q Consensus 109 vFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p-~g~K--KAyV~La~d~dAlDvA 162 (168)
|--++...+..+|++.++. || .|..|..+..+ .|.. -|||++....+|....
T Consensus 12 V~nl~~~~~~~~l~~~f~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 66 (85)
T 3mdf_A 12 VGGLAEEVDDKVLHAAFIP-FG-DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAI 66 (85)
T ss_dssp EECCCTTCCHHHHHHHHGG-GS-CEEEEECCEETTTTEECSEEEEEESSHHHHHHHH
T ss_pred EECCCCCCCHHHHHHHHhc-cC-CEEEEEEEECCCCCccccEEEEEECCHHHHHHHH
Confidence 3335568999999999987 56 56677655432 2333 3999998766655443
No 33
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=46.63 E-value=37 Score=23.32 Aligned_cols=53 Identities=11% Similarity=0.027 Sum_probs=36.9
Q ss_pred CeEEEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCCCCee--eEEEEcCCCCcHHH
Q 030945 106 NTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTK--KAYVRLTPDSDALD 160 (168)
Q Consensus 106 NtlvFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p~g~K--KAyV~La~d~dAlD 160 (168)
.-+|--++..++..+|++.++. || .|..|..+..++|.- =|||.+....+|..
T Consensus 13 ~lfV~~Lp~~~te~~L~~~F~~-~G-~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~ 67 (103)
T 1s79_A 13 SVYIKGFPTDATLDDIKEWLED-KG-QVLNIQMRRTLHKAFKGSIFVVFDSIESAKK 67 (103)
T ss_dssp CEEEECCCTTCCHHHHHHHHHT-SS-CEEEEEEECCCTTSCCCEEEEEESSHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHhh-cC-CEEEEEEEECCCCCCccEEEEEECCHHHHHH
Confidence 3455556778999999999987 67 577887776544221 39999986655443
No 34
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=46.49 E-value=33 Score=21.79 Aligned_cols=54 Identities=15% Similarity=0.184 Sum_probs=35.9
Q ss_pred EEEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCCC----CeeeEEEEcCCCCcHHHHHH
Q 030945 108 LVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD----GTKKAYVRLTPDSDALDVAN 163 (168)
Q Consensus 108 lvFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p~----g~KKAyV~La~d~dAlDvAn 163 (168)
+|--++...+..+|++.++. || .|..|.....++ ..--|||++....+|.....
T Consensus 8 ~V~nlp~~~t~~~l~~~F~~-~G-~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 65 (88)
T 4a8x_A 8 HIGRLTRNVTKDHIMEIFST-YG-KIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALK 65 (88)
T ss_dssp EEECCCTTCCHHHHHHHHHT-TS-CEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHh-CC-CEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHH
Confidence 33446678999999999987 55 566666655443 12259999987766554433
No 35
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=45.57 E-value=45 Score=22.05 Aligned_cols=55 Identities=18% Similarity=0.308 Sum_probs=36.6
Q ss_pred EEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCC--CC--eeeEEEEcCCCCcHHHHHHhh
Q 030945 109 VFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRP--DG--TKKAYVRLTPDSDALDVANKI 165 (168)
Q Consensus 109 vFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p--~g--~KKAyV~La~d~dAlDvAnki 165 (168)
|--++...+..+|++.+.. || .|..|..+..+ .| .--|||++....+|....+.+
T Consensus 20 V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 78 (107)
T 2cph_A 20 VRNIPFQANQREIRELFST-FG-ELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNAL 78 (107)
T ss_dssp EESCCTTCCHHHHHHHHHT-TS-CEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHH
T ss_pred EeCCCCcCCHHHHHHHHHc-cC-CeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHh
Confidence 3335678999999999988 56 57777765542 22 124999998776665554443
No 36
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=45.37 E-value=48 Score=22.39 Aligned_cols=52 Identities=10% Similarity=0.167 Sum_probs=36.1
Q ss_pred EEEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCCC-Cee--eEEEEcCCCCcHHHH
Q 030945 108 LVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-GTK--KAYVRLTPDSDALDV 161 (168)
Q Consensus 108 lvFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p~-g~K--KAyV~La~d~dAlDv 161 (168)
+|=-++...+..+|++.++. || .|..|..+..+. |.- -|||.+....+|...
T Consensus 23 fV~nLp~~~te~~L~~~F~~-~G-~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~A 77 (99)
T 4fxv_A 23 IVNYLPQNMTQDELRSLFSS-IG-EVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77 (99)
T ss_dssp EEESCCTTCCHHHHHHHHHT-TS-CEEEEEEEECSSSCCEEEEEEEEESSHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHh-cC-CEEEeEeeecCCCCcccccEEEEECCHHHHHHH
Confidence 33445678999999999987 56 577777665443 433 399999876665543
No 37
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=45.07 E-value=31 Score=23.98 Aligned_cols=51 Identities=16% Similarity=0.120 Sum_probs=34.4
Q ss_pred EEEecCCCHHHHHHHHHhHcCCceeeEEEeeCCCCe--eeEEEEcCCCCcHHHHH
Q 030945 110 FIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGT--KKAYVRLTPDSDALDVA 162 (168)
Q Consensus 110 FiVd~kAnK~qIKqAVkklydV~V~kVNTli~p~g~--KKAyV~La~d~dAlDvA 162 (168)
--++...+..+|++.++. ||. |..|.....+.|. --|||++....+|....
T Consensus 13 ~nLp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai 65 (116)
T 2fy1_A 13 GGLNRETNEKMLKAVFGK-HGP-ISEVLLIKDRTSKSRGFAFITFENPADAKNAA 65 (116)
T ss_dssp ECCTTTCCHHHHHHHHHT-SSC-CSEEEEECSTTTTCCCEEEEECSSHHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHHh-cCC-EEEEEEEECCCCCcccEEEEEECCHHHHHHHH
Confidence 335567999999999987 453 6677666544332 25999998766655443
No 38
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=44.53 E-value=35 Score=26.13 Aligned_cols=52 Identities=8% Similarity=0.033 Sum_probs=37.4
Q ss_pred EEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHHHH
Q 030945 109 VFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVAN 163 (168)
Q Consensus 109 vFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p~g~KKAyV~La~d~dAlDvAn 163 (168)
+.-++...+..+|++.+.. ||..|..|..+-...| -|||++....+|....+
T Consensus 156 V~nlp~~~t~~~l~~~f~~-~G~~i~~v~i~~~~~g--~afV~f~~~~~A~~Ai~ 207 (229)
T 2adc_A 156 LSNIPPSVSEEDLKVLFSS-NGGVVKGFKFFQKDRK--MALIQMGSVEEAVQALI 207 (229)
T ss_dssp EECCCTTCCHHHHHHHHHT-TSCCEEEEEECSSSTT--CEEEEESSHHHHHHHHH
T ss_pred EeCCCccCCHHHHHHHHHH-cCCCeeEEEEEECCCc--EEEEEECCHHHHHHHHH
Confidence 3335667899999999988 4878888876543344 69999987766655443
No 39
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=43.79 E-value=34 Score=22.97 Aligned_cols=51 Identities=24% Similarity=0.268 Sum_probs=32.5
Q ss_pred EEEecCCCHHHHHHHHHhHcCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHHH
Q 030945 110 FIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVA 162 (168)
Q Consensus 110 FiVd~kAnK~qIKqAVkklydV~V~kVNTli~p~g~KKAyV~La~d~dAlDvA 162 (168)
--++...+..+|++.++. || .|..|.........--|||++....+|....
T Consensus 28 ~nLp~~~t~~~l~~~F~~-~G-~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~ 78 (109)
T 1x4a_A 28 GNLPPDIRTKDIEDVFYK-YG-AIRDIDLKNRRGGPPFAFVEFEDPRDAEDAV 78 (109)
T ss_dssp ESCCTTCCHHHHHHHHGG-GS-CEEEEEECCSSSSSCCEEEEESCHHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHHh-cC-CeEEEEEEECCCCCcEEEEEECCHHHHHHHH
Confidence 334568899999999988 44 3555554332222236999998776655443
No 40
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=43.18 E-value=60 Score=21.44 Aligned_cols=52 Identities=19% Similarity=0.215 Sum_probs=35.0
Q ss_pred EEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCCC-Ce--eeEEEEcCCCCcHHHHH
Q 030945 109 VFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-GT--KKAYVRLTPDSDALDVA 162 (168)
Q Consensus 109 vFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p~-g~--KKAyV~La~d~dAlDvA 162 (168)
|--++...+..+|++.+.. || .|..|.....+. |. --|||.+....+|....
T Consensus 28 V~nlp~~~t~~~l~~~f~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 82 (106)
T 1p27_B 28 VTGVHEEATEEDIHDKFAE-YG-EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAM 82 (106)
T ss_dssp EECCCTTCCHHHHHHHHGG-GS-CEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHhc-cC-CeEEEEEEecCCCCceeeEEEEEECCHHHHHHHH
Confidence 3335667999999999977 45 567777665443 32 24999998766655443
No 41
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=42.47 E-value=40 Score=23.18 Aligned_cols=54 Identities=17% Similarity=0.290 Sum_probs=37.7
Q ss_pred CeEEEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCCCCee-eEEEEcCCCCcHHHH
Q 030945 106 NTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTK-KAYVRLTPDSDALDV 161 (168)
Q Consensus 106 NtlvFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p~g~K-KAyV~La~d~dAlDv 161 (168)
|-||=-++...+..+|++.+.. || .|..|..+...++.| =|||.+....+|...
T Consensus 7 ~lfV~nLp~~~te~~L~~~F~~-~G-~v~~v~i~~d~~~~kg~afV~f~~~~~A~~A 61 (115)
T 4f25_A 7 NIFIKNLDKSIDNKALYDTFSA-FG-NILSCKVVCDENGSKGYGFVHFETQEAAERA 61 (115)
T ss_dssp EEEEESCCTTCCHHHHHHHHGG-GS-CEEEEEEEEETTEEEEEEEEEESCHHHHHHH
T ss_pred EEEECCCCCCCCHHHHHHHHhc-cC-CEEEEEEeecCCCCCceEEEEECCHHHHHHH
Confidence 4444456778999999999987 56 477777766554422 499999876665443
No 42
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=41.66 E-value=64 Score=21.34 Aligned_cols=54 Identities=19% Similarity=0.317 Sum_probs=36.8
Q ss_pred CeEEEE--EecCCCHHHHHHHHHhHcCCceeeEEEeeCCCCee--eEEEEcCCCCcHHHH
Q 030945 106 NTLVFI--VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTK--KAYVRLTPDSDALDV 161 (168)
Q Consensus 106 NtlvFi--Vd~kAnK~qIKqAVkklydV~V~kVNTli~p~g~K--KAyV~La~d~dAlDv 161 (168)
++-+|+ ++...+..+|++.+.. || .|..|..+..+.|.- -|||.+....+|...
T Consensus 29 ~~~l~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A 86 (107)
T 3ulh_A 29 GGKLLVSNLDFGVSDADIQELFAE-FG-TLKKAAVHYDRSGRSLGTADVHFERKADALKA 86 (107)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHHT-TS-CEEEEEEEECTTSCEEEEEEEEESSHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEECCCCCcceEEEEEECCHHHHHHH
Confidence 444555 4568899999999987 45 456777666555532 599999866665444
No 43
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.49 E-value=39 Score=22.36 Aligned_cols=49 Identities=12% Similarity=0.270 Sum_probs=33.5
Q ss_pred EecCCCHHHHHHHHHhHcCCceeeEEEeeCCCC-eeeEEEEcCCCCcHHHHH
Q 030945 112 VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDG-TKKAYVRLTPDSDALDVA 162 (168)
Q Consensus 112 Vd~kAnK~qIKqAVkklydV~V~kVNTli~p~g-~KKAyV~La~d~dAlDvA 162 (168)
++...+..+|++.++. || .|..|..+..+++ .--|||++....+|....
T Consensus 23 lp~~~t~~~l~~~f~~-~G-~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~ 72 (103)
T 2cq3_A 23 IPFRFRDPDLRQMFGQ-FG-KILDVEIIFNERGSKGFGFVTFENSADADRAR 72 (103)
T ss_dssp CCTTCCHHHHHHHGGG-TS-CEEEEEEECCTTTTCCEEEEEESCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHh-cC-CeEEEEEEecCCCCcEEEEEEECCHHHHHHHH
Confidence 4567899999998887 44 4667776655443 225999998766655443
No 44
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.40 E-value=43 Score=21.63 Aligned_cols=46 Identities=7% Similarity=0.202 Sum_probs=32.6
Q ss_pred EEecCCCHHHHHHHHHhHcCCceeeEEEeeCCCCe--eeEEEEcCCCCcHH
Q 030945 111 IVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGT--KKAYVRLTPDSDAL 159 (168)
Q Consensus 111 iVd~kAnK~qIKqAVkklydV~V~kVNTli~p~g~--KKAyV~La~d~dAl 159 (168)
-++..++..+|++.++.. .|..|..+....|. --|||.+....+|.
T Consensus 17 nLp~~~t~~~l~~~F~~~---~i~~v~i~~~~~g~~~g~afV~f~~~~~a~ 64 (91)
T 2dgw_A 17 GAPFNVTEKNVMEFLAPL---KPVAIRIVRNAHGNKTGYIFVDFSNEEEVK 64 (91)
T ss_dssp CCCSSCCHHHHHHHHTTS---CCSEEEEEECTTSCEEEEEEEECSSHHHHH
T ss_pred CCCCCCCHHHHHHHHhhC---CceEEEEEECCCCCCceEEEEEECCHHHHH
Confidence 346689999999999886 46677766655543 25999998655543
No 45
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.27 E-value=28 Score=25.15 Aligned_cols=55 Identities=16% Similarity=0.216 Sum_probs=38.3
Q ss_pred CeEEEEE--ecCCCHHHHHHHHHhHcCC--ceeeEEEeeCCCCee--eEEEEcCCCCcHHH
Q 030945 106 NTLVFIV--DIRADKKKIKDAVKKMYDI--QAKKVNTLIRPDGTK--KAYVRLTPDSDALD 160 (168)
Q Consensus 106 NtlvFiV--d~kAnK~qIKqAVkklydV--~V~kVNTli~p~g~K--KAyV~La~d~dAlD 160 (168)
+..+|+- +-.++..+|++.++.+-.| .|..|..+...+|.- -|||.+....||..
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~ 83 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQN 83 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHH
Confidence 4555654 4589999999999996555 366777666555533 49999987666544
No 46
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=40.21 E-value=52 Score=22.76 Aligned_cols=54 Identities=20% Similarity=0.291 Sum_probs=37.6
Q ss_pred CeEEEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCCC-Cee--eEEEEcCCCCcHHHH
Q 030945 106 NTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-GTK--KAYVRLTPDSDALDV 161 (168)
Q Consensus 106 NtlvFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p~-g~K--KAyV~La~d~dAlDv 161 (168)
+-+|--++...+..++++.+++ || .|..|+.+..+. |.- -|||.+....+|...
T Consensus 8 ~lfV~nL~~~~te~~L~~~F~~-~G-~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~A 64 (110)
T 3s8s_A 8 EVTFARLNDNVRETFLKDMCRK-YG-EVEEVEILLHPRTRKHLGLARVLFTSTRGAKET 64 (110)
T ss_dssp EEEEESCCTTCCHHHHHHHHTT-TS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHh-cC-CeeEEEEEECCCCCceeeEEEEEECCHHHHHHH
Confidence 3455566778999999999877 55 577888776654 322 389998866665443
No 47
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.99 E-value=51 Score=22.27 Aligned_cols=53 Identities=11% Similarity=0.160 Sum_probs=36.2
Q ss_pred eEEEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCCC-Ce--eeEEEEcCCCCcHHHH
Q 030945 107 TLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-GT--KKAYVRLTPDSDALDV 161 (168)
Q Consensus 107 tlvFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p~-g~--KKAyV~La~d~dAlDv 161 (168)
-+|--++..++..+|++.+.. || .|..|..+..+. |. --|||.+....+|...
T Consensus 28 l~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A 83 (114)
T 2cq4_A 28 VFCMQLAARIRPRDLEDFFSA-VG-KVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLA 83 (114)
T ss_dssp EEEESCCTTCCHHHHHHHHTT-TS-CEEEEEECCSCCSSSCCCCEEEEESCGGGHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-CC-CEeEEEEEecCCCCccCcEEEEEeCcHHHHHHH
Confidence 444446778999999999877 55 577777664443 21 2499999877665543
No 48
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.94 E-value=45 Score=21.93 Aligned_cols=50 Identities=14% Similarity=0.189 Sum_probs=33.5
Q ss_pred EEecCCCHHHHHHHHHhHcCCceeeEEEeeCCC-C--eeeEEEEcCCCCcHHHHH
Q 030945 111 IVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-G--TKKAYVRLTPDSDALDVA 162 (168)
Q Consensus 111 iVd~kAnK~qIKqAVkklydV~V~kVNTli~p~-g--~KKAyV~La~d~dAlDvA 162 (168)
-++...+..+|++.++.+ | .|..|..+..+. | .--|||.+....+|....
T Consensus 19 nLp~~~t~~~l~~~f~~~-G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 71 (102)
T 1x5s_A 19 GLSFDTNEQSLEQVFSKY-G-QISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 71 (102)
T ss_dssp SCCTTCCHHHHHHHHHHH-S-CCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHhc-C-CeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHH
Confidence 346689999999999885 4 356666554332 1 125999998766655544
No 49
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=39.84 E-value=43 Score=22.63 Aligned_cols=49 Identities=16% Similarity=0.164 Sum_probs=33.4
Q ss_pred eEEEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHH
Q 030945 107 TLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDV 161 (168)
Q Consensus 107 tlvFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p~g~KKAyV~La~d~dAlDv 161 (168)
-+|--++..++..+|++.+.. || +|..|..+. +|+ |||.+....+|...
T Consensus 18 l~V~nLp~~~t~~~l~~~F~~-~G-~i~~~~i~~--~g~--afV~f~~~~~a~~A 66 (108)
T 1x4c_A 18 VVVSGLPPSGSWQDLKDHMRE-AG-DVCYADVYR--DGT--GVVEFVRKEDMTYA 66 (108)
T ss_dssp EEEESCCSSCCHHHHHHHHGG-GS-CEEEEEEET--TTE--EEEEESSHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CEeEEEEec--CCE--EEEEECCHHHHHHH
Confidence 344445678999999998886 55 566666543 364 99999876655443
No 50
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.79 E-value=23 Score=24.20 Aligned_cols=47 Identities=26% Similarity=0.329 Sum_probs=34.2
Q ss_pred EEecCCCHHHHHHHHHhHcCCceeeEEEeeCCCCee--eEEEEcCCCCcHHH
Q 030945 111 IVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTK--KAYVRLTPDSDALD 160 (168)
Q Consensus 111 iVd~kAnK~qIKqAVkklydV~V~kVNTli~p~g~K--KAyV~La~d~dAlD 160 (168)
-++..++..+|++.++. |++ + .|..+..++|.- -|||.+....+|..
T Consensus 22 nLp~~~te~~l~~~F~~-~G~-~-~v~i~~d~~g~~~G~afV~F~~~~~a~~ 70 (102)
T 1wez_A 22 GLPYRATENDIYNFFSP-LNP-M-RVHIEIGPDGRVTGEADVEFATHEDAVA 70 (102)
T ss_dssp SCCTTCCHHHHHHSSCS-CCC-S-EEEEEESSSSCEEEEEEEECSSSHHHHH
T ss_pred CCCCCCCHHHHHHHHHH-cCc-e-EEEEEECCCCCEeeEEEEEECCHHHHHH
Confidence 35668999999998877 673 3 787777666544 49999987766544
No 51
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.76 E-value=20 Score=25.28 Aligned_cols=46 Identities=15% Similarity=0.293 Sum_probs=33.3
Q ss_pred EecCCCHHHHHHHHHhHcCCceeeEEEeeCCCCee--eEEEEcCCCCcHHH
Q 030945 112 VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTK--KAYVRLTPDSDALD 160 (168)
Q Consensus 112 Vd~kAnK~qIKqAVkklydV~V~kVNTli~p~g~K--KAyV~La~d~dAlD 160 (168)
++-.++..+|++.++.+ + |..|..+..++|.- -|||.+....||..
T Consensus 24 Lp~~~te~dl~~~F~~~-~--v~~v~i~~d~~g~~~G~afV~F~~~~~a~~ 71 (109)
T 2dnn_A 24 MPFSAMENDVRDFFHGL-R--VDAVHLLKDHVGRNNGNGLVKFLSPQDTFE 71 (109)
T ss_dssp CCSSCCHHHHHHHTTTS-C--CCEEEECCCTTCCCCSEEEEECSSHHHHHH
T ss_pred CCCCCCHHHHHHHhccC-C--eeEEEEEECCCCCCCeEEEEEECCHHHHHH
Confidence 55689999999999885 4 56777766555432 49999987666544
No 52
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.25 E-value=64 Score=21.23 Aligned_cols=50 Identities=22% Similarity=0.347 Sum_probs=34.1
Q ss_pred EecCCCHHHHHHHHHhHcCCceeeEEEeeCCC-Ce--eeEEEEcCCCCcHHHHHH
Q 030945 112 VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-GT--KKAYVRLTPDSDALDVAN 163 (168)
Q Consensus 112 Vd~kAnK~qIKqAVkklydV~V~kVNTli~p~-g~--KKAyV~La~d~dAlDvAn 163 (168)
++...+..+|++.++. || .|..|..+..+. |. --|||++....+|.....
T Consensus 21 Lp~~~t~~~l~~~f~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 73 (103)
T 2dnm_A 21 LTYRTSPDSLRRVFEK-YG-RVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEA 73 (103)
T ss_dssp CCTTCCHHHHHHHHTT-TS-CEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHH
T ss_pred CCCCCCHHHHHHHHHh-cC-CEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHH
Confidence 4567999999999887 45 466666554433 21 249999998877665443
No 53
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=38.84 E-value=44 Score=20.69 Aligned_cols=36 Identities=11% Similarity=0.213 Sum_probs=31.3
Q ss_pred CCeEEEEEecCCCHHHHHHHHHhHcCCceeeEEEee
Q 030945 105 NNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLI 140 (168)
Q Consensus 105 nNtlvFiVd~kAnK~qIKqAVkklydV~V~kVNTli 140 (168)
..++.+.|+...+=.++|+.++..+++.+.....+.
T Consensus 10 g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~ 45 (76)
T 3a9j_A 10 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (76)
T ss_dssp SCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE
Confidence 357889999999999999999999999988776654
No 54
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=38.83 E-value=81 Score=20.67 Aligned_cols=49 Identities=22% Similarity=0.436 Sum_probs=35.0
Q ss_pred EEecCCCHHHHHHHHHhHcCCceeeEEEeeCCCCe--eeEEEEcCCCCcHHHH
Q 030945 111 IVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGT--KKAYVRLTPDSDALDV 161 (168)
Q Consensus 111 iVd~kAnK~qIKqAVkklydV~V~kVNTli~p~g~--KKAyV~La~d~dAlDv 161 (168)
-++...+..+|++.+.. || .|..|..+..+.|. --|||.+....+|...
T Consensus 16 nLp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A 66 (102)
T 2xs2_A 16 GIDVRMDETEIRSFFAR-YG-SVKEVKIITDRTGVSKGYGFVSFYNDVDVQKI 66 (102)
T ss_dssp CCCTTCCHHHHHHHHGG-GS-CEEEEEEEECTTSCEEEEEEEEESSCCCHHHH
T ss_pred CCCCCCCHHHHHHHHHh-CC-CeEEEEEEECCCCCccceEEEEECCHHHHHHH
Confidence 34568999999999977 45 56777766655543 2489999888776544
No 55
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=38.83 E-value=40 Score=23.82 Aligned_cols=51 Identities=8% Similarity=0.087 Sum_probs=33.6
Q ss_pred EEEEEecCCCHHHHHHHHHhHcCCceeeEEEe-eCCCCeeeEEEEcCCCCcHHHH
Q 030945 108 LVFIVDIRADKKKIKDAVKKMYDIQAKKVNTL-IRPDGTKKAYVRLTPDSDALDV 161 (168)
Q Consensus 108 lvFiVd~kAnK~qIKqAVkklydV~V~kVNTl-i~p~g~KKAyV~La~d~dAlDv 161 (168)
+|--++..++..++++.++. ||.+|..|... ..+.| -|||.+....||.+.
T Consensus 32 ~VgnLp~~~te~dL~~~F~~-~G~~v~~v~i~~~~~rG--faFV~F~~~e~A~~A 83 (111)
T 2jvr_A 32 TMKNLPEGCSWQDLKDLARE-NSLETTFSSVNTRDFDG--TGALEFPSEEILVEA 83 (111)
T ss_dssp EEECSSCCCCHHHHHHHHHH-HTCCCSEEECSSCSSSC--CEEEEESSHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHHH-hCCeeEEEEEEcCCCCC--EEEEEECCHHHHHHH
Confidence 33344567999999999987 46555555543 23445 499999876665443
No 56
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=38.68 E-value=60 Score=21.75 Aligned_cols=52 Identities=13% Similarity=0.312 Sum_probs=35.8
Q ss_pred CeEEEE--EecCCCHHHHHHHHHhHcCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHHH
Q 030945 106 NTLVFI--VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVA 162 (168)
Q Consensus 106 NtlvFi--Vd~kAnK~qIKqAVkklydV~V~kVNTli~p~g~KKAyV~La~d~dAlDvA 162 (168)
++-+|+ ++...+..+|++.+.. || .|..|..+. ..| -|||.+....+|....
T Consensus 25 ~~~l~V~nl~~~~t~~~l~~~F~~-~G-~i~~v~i~~-~~g--~afV~f~~~~~a~~A~ 78 (109)
T 1x4g_A 25 NCTVYCGGIASGLTDQLMRQTFSP-FG-QIMEIRVFP-EKG--YSFVRFSTHESAAHAI 78 (109)
T ss_dssp CCEEEEECCSSCCCHHHHHHHHHH-HS-CEEEEEEET-TTT--EEEEEESSHHHHHHHH
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEeC-CCC--EEEEEECCHHHHHHHH
Confidence 344455 4567999999999987 67 577776543 345 4999998776655443
No 57
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=38.68 E-value=46 Score=22.87 Aligned_cols=54 Identities=19% Similarity=0.310 Sum_probs=35.1
Q ss_pred eEEEE--EecCCCHHHHHHHHHhHcCCceeeEEEeeCC-CC--eeeEEEEcCCCCcHHHHH
Q 030945 107 TLVFI--VDIRADKKKIKDAVKKMYDIQAKKVNTLIRP-DG--TKKAYVRLTPDSDALDVA 162 (168)
Q Consensus 107 tlvFi--Vd~kAnK~qIKqAVkklydV~V~kVNTli~p-~g--~KKAyV~La~d~dAlDvA 162 (168)
+-+|+ ++...+..+|++.++. || .|..|..+..+ .| .--|||.+....+|....
T Consensus 23 ~~l~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 81 (126)
T 3ex7_B 23 WILFVTGVHEEATEEDIHDKFAE-YG-EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAM 81 (126)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHT-TS-CEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEecCCCCccceEEEEEECCHHHHHHHH
Confidence 34444 5568899999999987 55 56666665443 12 125999998766655443
No 58
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=38.51 E-value=30 Score=25.21 Aligned_cols=54 Identities=17% Similarity=0.314 Sum_probs=36.7
Q ss_pred eEEEE--EecCCCHHHHHHHHHhHcCCceeeEEEeeCCCCee--eEEEEcCCCCcHHHH
Q 030945 107 TLVFI--VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTK--KAYVRLTPDSDALDV 161 (168)
Q Consensus 107 tlvFi--Vd~kAnK~qIKqAVkklydV~V~kVNTli~p~g~K--KAyV~La~d~dAlDv 161 (168)
..+|+ ++..++..+|++.++.+ +|....|..+..++|.- -|||.+....+|...
T Consensus 43 ~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~A 100 (126)
T 2hgm_A 43 GFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKA 100 (126)
T ss_dssp CEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHH
Confidence 44565 45689999999999885 54322676665544321 499999988776543
No 59
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.46 E-value=50 Score=21.80 Aligned_cols=52 Identities=13% Similarity=0.278 Sum_probs=34.5
Q ss_pred eEEEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCCCCee--eEEEEcCCCCcHHHH
Q 030945 107 TLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTK--KAYVRLTPDSDALDV 161 (168)
Q Consensus 107 tlvFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p~g~K--KAyV~La~d~dAlDv 161 (168)
-+|--++...+..+|++.++. || .|..|..+.. .|.- -|||.+....+|...
T Consensus 18 l~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A 71 (103)
T 2d9p_A 18 LYVKNLDDGIDDERLRKAFSP-FG-TITSAKVMME-GGRSKGFGFVCFSSPEEATKA 71 (103)
T ss_dssp EEEECCCTTCCHHHHHHTTTT-TS-CEEEEEEEEC-SSSEEEEEEEEESSHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CEEEEEEEcC-CCCcCEEEEEEECCHHHHHHH
Confidence 344445678999999988876 55 3667766654 3332 489999866555443
No 60
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=38.40 E-value=26 Score=23.35 Aligned_cols=46 Identities=13% Similarity=0.170 Sum_probs=33.2
Q ss_pred EecCCCHHHHHHHHHhHcCCceeeEEEeeCCC--Cee--eEEEEcCCCCcHHH
Q 030945 112 VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD--GTK--KAYVRLTPDSDALD 160 (168)
Q Consensus 112 Vd~kAnK~qIKqAVkklydV~V~kVNTli~p~--g~K--KAyV~La~d~dAlD 160 (168)
++..++..+|++.++. || |..|..+..++ |.- -|||.+....+|..
T Consensus 23 lp~~~t~~~l~~~F~~-~G--i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~ 72 (104)
T 1wi8_A 23 LPYDVTEESIKEFFRG-LN--ISAVRLPREPSNPERLKGFGYAEFEDLDSLLS 72 (104)
T ss_dssp CCSSCCHHHHHHHTTT-SC--EEEEECCBCSSCTTSBCSCEEEEESSHHHHHH
T ss_pred CCCcCCHHHHHHHHHH-CC--ceEEEEecCCCCCCCcCeEEEEEECCHHHHHH
Confidence 5668999999999987 57 88888776543 221 49999986655544
No 61
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.82 E-value=52 Score=21.87 Aligned_cols=54 Identities=17% Similarity=0.199 Sum_probs=35.5
Q ss_pred eEEEE--EecCCCHHHHHHHHHhHcCCceeeEEEeeC------CCCeeeEEEEcCCCCcHHHHHH
Q 030945 107 TLVFI--VDIRADKKKIKDAVKKMYDIQAKKVNTLIR------PDGTKKAYVRLTPDSDALDVAN 163 (168)
Q Consensus 107 tlvFi--Vd~kAnK~qIKqAVkklydV~V~kVNTli~------p~g~KKAyV~La~d~dAlDvAn 163 (168)
+-+|+ ++...+..+|++.+... |-.|..|..+.. +.| -|||.+....+|.....
T Consensus 9 ~~l~V~nLp~~~t~~~l~~~f~~~-G~~v~~v~i~~~~~~~g~~~g--~afV~f~~~~~A~~A~~ 70 (109)
T 2dis_A 9 CRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRG--FAFVEYESHRAAAMARR 70 (109)
T ss_dssp EEEEEECCCTTSCHHHHHHHHHHH-STTEEEEECCSSSCTTTTTCC--EEEEEESSHHHHHHHHT
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHh-cCCceEEEEEccCCCCCCcCc--EEEEEecCHHHHHHHHH
Confidence 33454 45679999999999884 544777755422 224 49999987666554443
No 62
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.76 E-value=56 Score=21.08 Aligned_cols=49 Identities=6% Similarity=0.219 Sum_probs=33.4
Q ss_pred EecCCCHHHHHHHHHhHcCCceeeEEEeeCCC-C--eeeEEEEcCCCCcHHHHH
Q 030945 112 VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-G--TKKAYVRLTPDSDALDVA 162 (168)
Q Consensus 112 Vd~kAnK~qIKqAVkklydV~V~kVNTli~p~-g--~KKAyV~La~d~dAlDvA 162 (168)
++...+..+|++.++. || .|..|..+..++ | .--|||++....+|....
T Consensus 13 lp~~~t~~~l~~~f~~-~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 64 (95)
T 2dnz_A 13 LHFNITEDMLRGIFEP-FG-KIDNIVLMKDSDTGRSKGYGFITFSDSECARRAL 64 (95)
T ss_dssp CCTTCCHHHHHHHHTT-TS-CEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHh-cC-CEeEEEEeecCCCCceeeEEEEEECCHHHHHHHH
Confidence 4567999999999987 45 577777665443 1 125999998766655443
No 63
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.51 E-value=86 Score=20.59 Aligned_cols=50 Identities=14% Similarity=0.236 Sum_probs=34.1
Q ss_pred EEEecCCCHHHHHHHHHhHcCCceeeEEEeeCCC-Cee--eEEEEcCCCCcHHHH
Q 030945 110 FIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-GTK--KAYVRLTPDSDALDV 161 (168)
Q Consensus 110 FiVd~kAnK~qIKqAVkklydV~V~kVNTli~p~-g~K--KAyV~La~d~dAlDv 161 (168)
--++...+..+|++.+.. || .|..|..+..+. |.- -|||.+....+|...
T Consensus 21 ~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A 73 (103)
T 2cqg_A 21 LGLPWKTTEQDLKEYFST-FG-EVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKV 73 (103)
T ss_dssp ESCCSSCCHHHHHHHHGG-GS-CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHH
T ss_pred EcCCCcCCHHHHHHHHHh-cC-CeEEEEEEecCCCCCccceEEEEECCHHHHHHH
Confidence 335668999999999977 55 467777766543 322 499999866555443
No 64
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=37.49 E-value=47 Score=22.84 Aligned_cols=54 Identities=19% Similarity=0.285 Sum_probs=35.6
Q ss_pred CeEEEEE--ecCCCHHHHHHHHHhHcCCceeeEEEeeCCCCe--eeEEEEcCCCCcHHHH
Q 030945 106 NTLVFIV--DIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGT--KKAYVRLTPDSDALDV 161 (168)
Q Consensus 106 NtlvFiV--d~kAnK~qIKqAVkklydV~V~kVNTli~p~g~--KKAyV~La~d~dAlDv 161 (168)
++-+|+- +...+..+|++.+.. || .|..|..+..+.|. --|||++....+|...
T Consensus 35 ~~~l~V~nlp~~~t~~~l~~~F~~-~G-~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~A 92 (124)
T 2kt5_A 35 GAKLLVSNLDFGVSDADIQELFAE-FG-TLKKAAVDYDRSGRSLGTADVHFERRADALKA 92 (124)
T ss_dssp CEEEEEESCCSSCCHHHHHHHHHT-TS-CCSEEEEECCSSSSCCSEEEEEESSHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEEECCCCCEeeEEEEEECCHHHHHHH
Confidence 3445554 567999999999988 45 45666665544332 2599999876665443
No 65
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=36.79 E-value=47 Score=22.07 Aligned_cols=36 Identities=11% Similarity=0.213 Sum_probs=31.6
Q ss_pred CCeEEEEEecCCCHHHHHHHHHhHcCCceeeEEEee
Q 030945 105 NNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLI 140 (168)
Q Consensus 105 nNtlvFiVd~kAnK~qIKqAVkklydV~V~kVNTli 140 (168)
..++.|.|+...+=.++|+.|+..+++.+.....+.
T Consensus 11 g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~ 46 (96)
T 3k9o_B 11 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 46 (96)
T ss_dssp CCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEE
Confidence 468889999999999999999999999998876553
No 66
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.56 E-value=90 Score=20.54 Aligned_cols=48 Identities=8% Similarity=0.169 Sum_probs=34.5
Q ss_pred EecCCCHHHHHHHHHhHcCCceeeEEEeeCCC-Ce--eeEEEEcCCCCcHHHH
Q 030945 112 VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-GT--KKAYVRLTPDSDALDV 161 (168)
Q Consensus 112 Vd~kAnK~qIKqAVkklydV~V~kVNTli~p~-g~--KKAyV~La~d~dAlDv 161 (168)
++...+..+|++.+.. || .|..|..+..+. |. --|||++....+|...
T Consensus 24 lp~~~t~~~l~~~F~~-~G-~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a 74 (105)
T 2dh8_A 24 LDWSTTQETLRSYFSQ-YG-EVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 74 (105)
T ss_dssp CCTTCCHHHHHHHHHT-TS-CEEEEEEEECSSSCCEEEEEEEEESSTTHHHHH
T ss_pred CCCCCCHHHHHHHHHh-cC-CeEEEEEeeCCCCCCcceEEEEEECCHHHHHHH
Confidence 4568999999999988 55 577777766543 22 2599999987765543
No 67
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=36.37 E-value=1e+02 Score=22.29 Aligned_cols=64 Identities=14% Similarity=0.280 Sum_probs=39.7
Q ss_pred hhhhhhcCCeEEEEEe---cCCCHHHHHHHHHhHcCCceeeE--EEee-CCC-CeeeEEEEcCCCCcHHHHHHhh
Q 030945 98 AMKKIEDNNTLVFIVD---IRADKKKIKDAVKKMYDIQAKKV--NTLI-RPD-GTKKAYVRLTPDSDALDVANKI 165 (168)
Q Consensus 98 amk~~E~nNtlvFiVd---~kAnK~qIKqAVkklydV~V~kV--NTli-~p~-g~KKAyV~La~d~dAlDvAnki 165 (168)
...++.. .+++|.|- ...+|.+|+..+-++|+++..-| -.+. ..| |.=..|... ||.+|.|.++
T Consensus 10 ~N~LL~R-ke~~~~v~H~~~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I---Yds~e~akk~ 80 (101)
T 1xn9_A 10 KNPLLNR-RELDFIVKYEGSTPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL---YEDADRMKQV 80 (101)
T ss_dssp EETTTTE-EEEEEEEECSSSCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE---CSCHHHHHHH
T ss_pred ecCCcCc-EEEEEEEEcCCCCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE---ECCHHHHHhh
Confidence 3344544 47777654 34689999999999999875433 2222 223 444555544 5668887764
No 68
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=36.33 E-value=58 Score=20.74 Aligned_cols=35 Identities=11% Similarity=0.132 Sum_probs=30.8
Q ss_pred CCeEEEEEecCCCHHHHHHHHHhHcCCceeeEEEe
Q 030945 105 NNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTL 139 (168)
Q Consensus 105 nNtlvFiVd~kAnK~qIKqAVkklydV~V~kVNTl 139 (168)
..++.|.|+...+=.++|+.++..+|+.+.....+
T Consensus 14 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~ 48 (79)
T 3phx_B 14 GRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT 48 (79)
T ss_dssp SCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEE
T ss_pred CCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEE
Confidence 46888999999999999999999999999877544
No 69
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=36.04 E-value=52 Score=23.72 Aligned_cols=63 Identities=10% Similarity=0.146 Sum_probs=39.1
Q ss_pred hhhhhcCCeEEEEEec----CCCHHHHHHHHHhHcCCceeeEEE--ee-CCC-CeeeEEEEcCCCCcHHHHHHhh
Q 030945 99 MKKIEDNNTLVFIVDI----RADKKKIKDAVKKMYDIQAKKVNT--LI-RPD-GTKKAYVRLTPDSDALDVANKI 165 (168)
Q Consensus 99 mk~~E~nNtlvFiVd~----kAnK~qIKqAVkklydV~V~kVNT--li-~p~-g~KKAyV~La~d~dAlDvAnki 165 (168)
..++.. .+++|.|.= ..+|.+|+..+-++|+++..-|=. +. ..| |.=..|... ||.+|.|.++
T Consensus 11 N~LL~R-ke~~~~v~hp~~~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I---Yds~e~~kk~ 81 (98)
T 2g1d_A 11 NPILKR-KEIKYVLKFDSSRTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI---YADKPSAMLY 81 (98)
T ss_dssp CSSSCE-EEEEEEEECCTTSCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE---ESHHHHHHHH
T ss_pred cCCcCc-EEEEEEEEeCCCCCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE---ECCHHHHHhh
Confidence 334443 477776543 569999999999999987543311 11 112 444445444 6778888775
No 70
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=35.93 E-value=66 Score=22.43 Aligned_cols=54 Identities=9% Similarity=0.246 Sum_probs=37.4
Q ss_pred eEEEE--EecCCCHHHHHHHHHhHcCCceeeEEEeeCCC-Ce--eeEEEEcCCCCcHHHHH
Q 030945 107 TLVFI--VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-GT--KKAYVRLTPDSDALDVA 162 (168)
Q Consensus 107 tlvFi--Vd~kAnK~qIKqAVkklydV~V~kVNTli~p~-g~--KKAyV~La~d~dAlDvA 162 (168)
+-+|+ ++..++..+|++.++.+ | .|..|..+..++ |. --|||.+....+|....
T Consensus 43 ~~l~V~nLp~~~~~~~l~~~F~~~-G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 101 (139)
T 1u6f_A 43 RNLMVNYIPTTVDEVQLRQLFERY-G-PIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAI 101 (139)
T ss_dssp SEEEEESCSTTCCHHHHHHHHHHH-S-CEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc-C-CeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHH
Confidence 33454 56789999999999884 5 477777766554 32 24999998776655543
No 71
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=35.85 E-value=47 Score=25.07 Aligned_cols=54 Identities=19% Similarity=0.302 Sum_probs=35.9
Q ss_pred CeEEEE--EecCCCHHHHHHHHHhHcCCceeeEEEeeCCCCe--eeEEEEcCCCCcHHHH
Q 030945 106 NTLVFI--VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGT--KKAYVRLTPDSDALDV 161 (168)
Q Consensus 106 NtlvFi--Vd~kAnK~qIKqAVkklydV~V~kVNTli~p~g~--KKAyV~La~d~dAlDv 161 (168)
++-+|+ ++..++..+|++.|.. || .|..|.....+.|. --|||.+....+|...
T Consensus 88 ~~~l~V~nLp~~~te~~L~~~F~~-~G-~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~A 145 (177)
T 2f3j_A 88 GAKLLVSNLDFGVSDADIQELFAE-FG-TLKKAAVDYDRSGRSLGTADVHFERRADALKA 145 (177)
T ss_dssp CEEEEEECCCSCCCHHHHHHHHHH-TS-CCSEEEECCCTTSSCSCCEEEEESCHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEECCCCCEeeEEEEEeCCHHHHHHH
Confidence 445555 4567999999999998 55 45666655443332 2499999876665543
No 72
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=35.77 E-value=53 Score=20.30 Aligned_cols=36 Identities=11% Similarity=0.209 Sum_probs=31.3
Q ss_pred CCeEEEEEecCCCHHHHHHHHHhHcCCceeeEEEee
Q 030945 105 NNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLI 140 (168)
Q Consensus 105 nNtlvFiVd~kAnK~qIKqAVkklydV~V~kVNTli 140 (168)
..++.+.|+...+=.++|+.++..+++.+.....+.
T Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~ 45 (76)
T 1ndd_A 10 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 45 (76)
T ss_dssp SCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE
Confidence 357889999999999999999999999988877654
No 73
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=35.66 E-value=1.2e+02 Score=23.62 Aligned_cols=57 Identities=21% Similarity=0.244 Sum_probs=37.2
Q ss_pred CeEEEEEec----CCCHHHHHHHHHhHcCCceeeE--EEeeC-C-CCeeeEEEEcCCCCcHHHHHHhh
Q 030945 106 NTLVFIVDI----RADKKKIKDAVKKMYDIQAKKV--NTLIR-P-DGTKKAYVRLTPDSDALDVANKI 165 (168)
Q Consensus 106 NtlvFiVd~----kAnK~qIKqAVkklydV~V~kV--NTli~-p-~g~KKAyV~La~d~dAlDvAnki 165 (168)
.+++|.|.= ..+|.||++.+-++|+++..-| -.+.. . +|.=..|..+ ||.+|.|.++
T Consensus 19 kE~v~dV~Hpg~aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I---YDs~e~aKk~ 83 (149)
T 2xzm_P 19 RQLSLDVLHPDSPTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV---YDNQQYLLKY 83 (149)
T ss_dssp EEEEEEEECSSSCSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE---ESCHHHHHHH
T ss_pred EEEEEEEEeCCCCCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE---eCCHHHHHhh
Confidence 467776543 6789999999999999865444 22222 2 2444555544 5668887765
No 74
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=35.23 E-value=1.1e+02 Score=21.30 Aligned_cols=56 Identities=9% Similarity=0.091 Sum_probs=39.6
Q ss_pred CeEEEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCC-CCee--eEEEEcCCCCcHHHHHH
Q 030945 106 NTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRP-DGTK--KAYVRLTPDSDALDVAN 163 (168)
Q Consensus 106 NtlvFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p-~g~K--KAyV~La~d~dAlDvAn 163 (168)
.-++--++...+..+|++.++. || .|..|..+..+ .|.- -|||++....+|.....
T Consensus 96 ~l~v~nlp~~~t~~~l~~~f~~-~G-~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 154 (172)
T 2g4b_A 96 KLFIGGLPNYLNDDQVKELLTS-FG-PLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIA 154 (172)
T ss_dssp CEEEECCCTTCCHHHHHHHHHT-TS-CEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHH
T ss_pred EEEEEcCCCcCCHHHHHHHHHh-cC-CceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Confidence 4455556778999999999987 55 46777776654 3433 39999998877765544
No 75
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=34.40 E-value=50 Score=21.13 Aligned_cols=36 Identities=11% Similarity=0.237 Sum_probs=31.4
Q ss_pred CCeEEEEEecCCCHHHHHHHHHhHcCCceeeEEEee
Q 030945 105 NNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLI 140 (168)
Q Consensus 105 nNtlvFiVd~kAnK~qIKqAVkklydV~V~kVNTli 140 (168)
..++.+.|+...+=.++|+.++..+++.+.....+.
T Consensus 13 g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~ 48 (85)
T 3n3k_B 13 GRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 48 (85)
T ss_dssp GCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE
Confidence 368889999999999999999999999998876554
No 76
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=34.21 E-value=85 Score=20.01 Aligned_cols=48 Identities=10% Similarity=0.055 Sum_probs=31.8
Q ss_pred EecCCCHHHHHHHHHhHcCCceeeEEEeeCCCC-eeeEEEEcCCCCcHHHH
Q 030945 112 VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDG-TKKAYVRLTPDSDALDV 161 (168)
Q Consensus 112 Vd~kAnK~qIKqAVkklydV~V~kVNTli~p~g-~KKAyV~La~d~dAlDv 161 (168)
++...+..+|++.+.. || .|..|......+. .--|||++....+|...
T Consensus 16 lp~~~t~~~l~~~f~~-~G-~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a 64 (92)
T 2dgv_A 16 LPFDFTWKMLKDKFNE-CG-HVLYADIKMENGKSKGCGVVKFESPEVAERA 64 (92)
T ss_dssp CCTTCCHHHHHHHHHT-TS-CEEEEEEEESSSCEEEEEEEEESSHHHHHHH
T ss_pred CCCCCCHHHHHHHHHh-cC-CEEEEEEEccCCCcceEEEEEECCHHHHHHH
Confidence 4568899999999988 44 4556665542221 22499999876665544
No 77
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=33.96 E-value=94 Score=21.42 Aligned_cols=52 Identities=10% Similarity=0.146 Sum_probs=36.1
Q ss_pred EEEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCC-CCe--eeEEEEcCCCCcHHHH
Q 030945 108 LVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRP-DGT--KKAYVRLTPDSDALDV 161 (168)
Q Consensus 108 lvFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p-~g~--KKAyV~La~d~dAlDv 161 (168)
+|--++...+..+|++.++. || .|..|..+..+ .|. --|||.+....+|...
T Consensus 6 ~v~nlp~~~~~~~l~~~f~~-~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a 60 (167)
T 1fxl_A 6 IVNYLPQNMTQEEFRSLFGS-IG-EIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 60 (167)
T ss_dssp EEESCCTTCCHHHHHHHHHT-TS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred EEcCCCCCCCHHHHHHHHHh-cC-CeEEEEEEeCCCCCcceeEEEEEECCHHHHHHH
Confidence 33345778999999999987 56 57778777655 332 3499999876665443
No 78
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=33.44 E-value=35 Score=23.30 Aligned_cols=56 Identities=13% Similarity=0.160 Sum_probs=39.2
Q ss_pred eEEEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCCC-Cee--eEEEEcCCCCcHHHHH
Q 030945 107 TLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-GTK--KAYVRLTPDSDALDVA 162 (168)
Q Consensus 107 tlvFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p~-g~K--KAyV~La~d~dAlDvA 162 (168)
-+|--.+...+..+|++.++..=.+.+..|.....+. |.- =|||.+....+|....
T Consensus 12 lfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai 70 (95)
T 2lkz_A 12 IILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLL 70 (95)
T ss_dssp EEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHH
T ss_pred EEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHH
Confidence 3444577889999999999885456888887665432 211 3999999777665543
No 79
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=33.40 E-value=81 Score=19.82 Aligned_cols=49 Identities=8% Similarity=0.087 Sum_probs=34.6
Q ss_pred EEEEEecCCCHHHHHHHHHhHc---CC------ceeeEEEeeCCCCeeeEEEEcCCCCcHH
Q 030945 108 LVFIVDIRADKKKIKDAVKKMY---DI------QAKKVNTLIRPDGTKKAYVRLTPDSDAL 159 (168)
Q Consensus 108 lvFiVd~kAnK~qIKqAVkkly---dV------~V~kVNTli~p~g~KKAyV~La~d~dAl 159 (168)
+|--++..++..+|++.+.... |+ .|..|.+. +..| -|||.+....+|.
T Consensus 10 ~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~-~~kg--~afV~f~~~~~a~ 67 (87)
T 2hzc_A 10 YVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKN--FAFLEFRSVDETT 67 (87)
T ss_dssp EEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEC-SSSS--EEEEEESSHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEec-CCCc--EEEEEcCCHHHHH
Confidence 3444567899999999998863 65 67777654 3345 4999998665544
No 80
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=33.29 E-value=66 Score=23.40 Aligned_cols=67 Identities=12% Similarity=0.177 Sum_probs=41.7
Q ss_pred chhhhhhhhcCCeEEEEEec---CCCHHHHHHHHHhHcCCceeeE--EEee-CCC-CeeeEEEEcCCCCcHHHHHHhh
Q 030945 95 TESAMKKIEDNNTLVFIVDI---RADKKKIKDAVKKMYDIQAKKV--NTLI-RPD-GTKKAYVRLTPDSDALDVANKI 165 (168)
Q Consensus 95 TEkamk~~E~nNtlvFiVd~---kAnK~qIKqAVkklydV~V~kV--NTli-~p~-g~KKAyV~La~d~dAlDvAnki 165 (168)
.+....++.. .+++|.|.= ..+|.+|+..+-++|+++..-| -.+. ..| |.-..|... ||.+|.|.++
T Consensus 7 ~~~~N~LL~R-ke~~~~v~H~~~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I---Yds~e~akk~ 80 (102)
T 1ywx_A 7 SDRNNPLLQR-REIKFTVSFDAATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI---YNDEKAMATI 80 (102)
T ss_dssp EEEEETTTTE-EEEEEEEECSSCCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE---CSCHHHHHHS
T ss_pred EeeecCCcCc-EEEEEEEEcCCCCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE---ECCHHHHHhh
Confidence 3444455554 477776543 4589999999999999976433 2222 223 444555544 5668888765
No 81
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=32.98 E-value=1e+02 Score=23.35 Aligned_cols=54 Identities=9% Similarity=-0.006 Sum_probs=36.1
Q ss_pred eEEEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCCCCee--eEEEEcCCCCcHHHHH
Q 030945 107 TLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTK--KAYVRLTPDSDALDVA 162 (168)
Q Consensus 107 tlvFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p~g~K--KAyV~La~d~dAlDvA 162 (168)
-+|--++..++..+|++.+.. ||- |..|......+|.- =|||.+....+|....
T Consensus 112 l~V~nLp~~~t~~~L~~~F~~-~G~-v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~ 167 (193)
T 2voo_A 112 VYIKGFPTDATLDDIKEWLED-KGQ-VLNIQMRRTLHKAFKGSIFVVFDSIESAKKFV 167 (193)
T ss_dssp EEEECCCTTCCHHHHHHHHTT-SCC-EEEEEEEECTTCCEEEEEEEEESSHHHHHHHH
T ss_pred EEecCCCCcCCHHHHHHHHhc-CCC-EEEEEEEECCCCCcccEEEEEECCHHHHHHHH
Confidence 334445678999999999887 563 77777665444322 4999998776655443
No 82
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.88 E-value=65 Score=20.80 Aligned_cols=49 Identities=12% Similarity=0.343 Sum_probs=33.3
Q ss_pred eEEEE--EecCCCHHHHHHHHHhHcCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHHH
Q 030945 107 TLVFI--VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVA 162 (168)
Q Consensus 107 tlvFi--Vd~kAnK~qIKqAVkklydV~V~kVNTli~p~g~KKAyV~La~d~dAlDvA 162 (168)
+-+|+ ++...+..+|++.++. || +|..|..+ .| -|||++....+|....
T Consensus 11 ~~l~V~nLp~~~t~~~l~~~F~~-~G-~v~~v~~~---~~--~afV~f~~~~~a~~A~ 61 (92)
T 2dgt_A 11 TKLHVGNISPTCTNQELRAKFEE-YG-PVIECDIV---KD--YAFVHMERAEDAVEAI 61 (92)
T ss_dssp EEEEEESCCSSCCHHHHHHHHHT-TS-CCCEEEEC---SS--EEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEE---CC--EEEEEECCHHHHHHHH
Confidence 44455 4567999999999988 55 45566554 23 6999998766655443
No 83
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=32.60 E-value=76 Score=20.76 Aligned_cols=36 Identities=22% Similarity=0.340 Sum_probs=31.5
Q ss_pred CCeEEEEEecCCCHHHHHHHHHhHcCCceeeEEEee
Q 030945 105 NNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLI 140 (168)
Q Consensus 105 nNtlvFiVd~kAnK~qIKqAVkklydV~V~kVNTli 140 (168)
..++.|.|+...+=.++|+.|+..+|+.+.....+.
T Consensus 15 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~ 50 (90)
T 4dwf_A 15 SQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY 50 (90)
T ss_dssp CCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 468899999999999999999999999998876543
No 84
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=32.39 E-value=65 Score=20.48 Aligned_cols=35 Identities=11% Similarity=0.209 Sum_probs=31.0
Q ss_pred CCeEEEEEecCCCHHHHHHHHHhHcCCceeeEEEe
Q 030945 105 NNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTL 139 (168)
Q Consensus 105 nNtlvFiVd~kAnK~qIKqAVkklydV~V~kVNTl 139 (168)
..++.+.|+...+=.++|+.++..+++.+.....+
T Consensus 13 g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~ 47 (85)
T 3mtn_B 13 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 47 (85)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEE
Confidence 46889999999999999999999999999887654
No 85
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.14 E-value=89 Score=20.02 Aligned_cols=43 Identities=14% Similarity=0.340 Sum_probs=30.8
Q ss_pred EecCCCHHHHHHHHHhHcCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHH
Q 030945 112 VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDV 161 (168)
Q Consensus 112 Vd~kAnK~qIKqAVkklydV~V~kVNTli~p~g~KKAyV~La~d~dAlDv 161 (168)
++...+..+|++.++. || .|..|... .| -|||.+....+|...
T Consensus 16 lp~~~t~~~l~~~F~~-~G-~i~~v~~~---~g--~afV~f~~~~~A~~A 58 (90)
T 2dnq_A 16 LPREATEQEIRSLFEQ-YG-KVLECDII---KN--YGFVHIEDKTAAEDA 58 (90)
T ss_dssp CCSSCCHHHHHHHHHT-SS-CEEEEEEE---TT--EEEEEESSHHHHHHH
T ss_pred CCCCCCHHHHHHHHHh-CC-CEEEEEEE---CC--EEEEEECCHHHHHHH
Confidence 5668999999999987 45 46666654 45 499999876665443
No 86
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=32.06 E-value=93 Score=19.33 Aligned_cols=54 Identities=17% Similarity=0.317 Sum_probs=36.2
Q ss_pred EEEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCCC-Ce--eeEEEEcCCCCcHHHHHH
Q 030945 108 LVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-GT--KKAYVRLTPDSDALDVAN 163 (168)
Q Consensus 108 lvFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p~-g~--KKAyV~La~d~dAlDvAn 163 (168)
+|--++...+..+|++.+.. || .|..|.....+. |. --|||.+....+|....+
T Consensus 5 ~V~nlp~~~t~~~l~~~f~~-~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~ 61 (83)
T 3md1_A 5 FVGDLNVNVDDETLRNAFKD-FP-SYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMD 61 (83)
T ss_dssp EEECCCTTCCHHHHHHHHTT-ST-TEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHH
Confidence 34445678899999998876 55 577777665543 32 249999987766554433
No 87
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=31.99 E-value=1.4e+02 Score=21.77 Aligned_cols=63 Identities=17% Similarity=0.177 Sum_probs=39.9
Q ss_pred hhhhhcCCeEEEEEec----CCCHHHHHHHHHhHcCCceeeE--EEeeC-CC-CeeeEEEEcCCCCcHHHHHHhh
Q 030945 99 MKKIEDNNTLVFIVDI----RADKKKIKDAVKKMYDIQAKKV--NTLIR-PD-GTKKAYVRLTPDSDALDVANKI 165 (168)
Q Consensus 99 mk~~E~nNtlvFiVd~----kAnK~qIKqAVkklydV~V~kV--NTli~-p~-g~KKAyV~La~d~dAlDvAnki 165 (168)
..++.. .+++|.|.= ..+|.+|+..+-++|+++..-| -.+.. .| |.=..|... ||.+|.|.++
T Consensus 19 N~LL~R-ke~~~~v~Hpg~~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I---Yds~e~akk~ 89 (107)
T 2v94_A 19 NKLIGR-KEIYFEIYHPGEPTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY---YYDKDRMLYI 89 (107)
T ss_dssp ETTTTE-EEEEEEEECTTSCCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE---ESSHHHHHHH
T ss_pred cCCcCc-EEEEEEEEeCCCCCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE---ECCHHHHHhh
Confidence 345544 578886643 4589999999999999965443 22222 22 444555544 5668888765
No 88
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=31.94 E-value=1.2e+02 Score=22.96 Aligned_cols=52 Identities=15% Similarity=0.232 Sum_probs=36.3
Q ss_pred CeEEEEE--ec-CCCHHHHHHHHHhHcCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHH
Q 030945 106 NTLVFIV--DI-RADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDV 161 (168)
Q Consensus 106 NtlvFiV--d~-kAnK~qIKqAVkklydV~V~kVNTli~p~g~KKAyV~La~d~dAlDv 161 (168)
+.-+|+- +. .++..+|++.++. ||- |..|..+..+.|+ |||.+....+|...
T Consensus 34 ~~~l~V~nLp~~~~te~~L~~~F~~-~G~-i~~v~i~~~~~g~--afV~F~~~~~A~~A 88 (229)
T 2adc_A 34 NSVLLVSNLNPERVTPQSLFILFGV-YGD-VQRVKILFNKKEN--ALVQMADGNQAQLA 88 (229)
T ss_dssp CSEEEEESCCTTTCCHHHHHHHHHH-HTC-EEEEEECCTTSCC--EEEEESCHHHHHHH
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHh-CCC-eEEEEEEECCCCE--EEEEECCHHHHHHH
Confidence 4444554 45 7899999999987 453 7777776655565 99999876665443
No 89
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.91 E-value=53 Score=22.09 Aligned_cols=51 Identities=16% Similarity=0.324 Sum_probs=33.4
Q ss_pred EEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCCCCee--eEEEEcCCCCcHHHH
Q 030945 109 VFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTK--KAYVRLTPDSDALDV 161 (168)
Q Consensus 109 vFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p~g~K--KAyV~La~d~dAlDv 161 (168)
|--++...+..+|++.+.. || .|..|..+..+.|.- -|||.+....+|...
T Consensus 30 V~nlp~~~t~~~l~~~F~~-~G-~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A 82 (114)
T 1x5o_A 30 ISNLPLSMDEQELENMLKP-FG-QVISTRILRDSSGTSRGVGFARMESTEKCEAV 82 (114)
T ss_dssp EESCCTTCCHHHHHHTTTT-TS-CEEEEEEEECSSSCEEEEEEEEESCHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHh-cC-CEEEEEEEECCCCCcceEEEEEECCHHHHHHH
Confidence 3345667899999888876 44 466777666554432 389998866554443
No 90
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=31.80 E-value=1.4e+02 Score=22.82 Aligned_cols=46 Identities=15% Similarity=0.307 Sum_probs=37.8
Q ss_pred CeEEEEE----ecCCCHHHHHHHHHhHcCCceeeEEEeeCCCC---eeeEEEEcC
Q 030945 106 NTLVFIV----DIRADKKKIKDAVKKMYDIQAKKVNTLIRPDG---TKKAYVRLT 153 (168)
Q Consensus 106 NtlvFiV----d~kAnK~qIKqAVkklydV~V~kVNTli~p~g---~KKAyV~La 153 (168)
+-||.-. +...+-.+|+.+|.. || +|..++...-|.. .==++|+..
T Consensus 4 kI~VgnL~~~~~~~tte~~Lk~~Fs~-fG-eV~~~~li~Dp~Tg~slGfgfVef~ 56 (136)
T 2j8a_A 4 EIVVYPAQDSTTTNIQDISIKNYFKK-YG-EISHFEAFNDPNSALPLHVYLIKYA 56 (136)
T ss_dssp EEEEEESSSSCCCCCCHHHHHHHHHT-TS-CCSEEEEEECTTTCCEEEEEEEECC
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHh-cC-CeEEEEEEecCCCCceeeEEEEEEC
Confidence 4677777 889999999999995 89 9999999998862 223889998
No 91
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=31.49 E-value=51 Score=21.80 Aligned_cols=51 Identities=12% Similarity=0.205 Sum_probs=35.7
Q ss_pred eEEEE--EecCCCHHHHHHHHHhHcCCceeeEEEeeCCC-Ce--eeEEEEcCCCCcHHH
Q 030945 107 TLVFI--VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-GT--KKAYVRLTPDSDALD 160 (168)
Q Consensus 107 tlvFi--Vd~kAnK~qIKqAVkklydV~V~kVNTli~p~-g~--KKAyV~La~d~dAlD 160 (168)
.-+|+ ++...+..+|++.++.+ + |..|..+..+. |. --|||.+....+|..
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~-g--i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~ 71 (103)
T 2dng_A 16 YTAYVGNLPFNTVQGDIDAIFKDL-S--IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKE 71 (103)
T ss_dssp EEEEEESCCTTCCHHHHHHHTTTS-C--EEEEEEEECSSSCSEEEEEEEEESSHHHHHH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhC-C--ceEEEEeecCCCCccceEEEEEECCHHHHHH
Confidence 33444 46689999999999886 6 88888776653 22 259999986655443
No 92
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=31.04 E-value=1.5e+02 Score=21.26 Aligned_cols=50 Identities=10% Similarity=0.137 Sum_probs=36.0
Q ss_pred EecCCCHHHHHHHHHhHcCCceeeEEEeeCC-CC--eeeEEEEcCCCCcHHHHHH
Q 030945 112 VDIRADKKKIKDAVKKMYDIQAKKVNTLIRP-DG--TKKAYVRLTPDSDALDVAN 163 (168)
Q Consensus 112 Vd~kAnK~qIKqAVkklydV~V~kVNTli~p-~g--~KKAyV~La~d~dAlDvAn 163 (168)
++...+..+|++.++. || .|..|..+..+ .| .--|||.+....+|.....
T Consensus 122 l~~~~~~~~l~~~f~~-~G-~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 174 (198)
T 2yh0_A 122 LPNYLNDDQVKELLTS-FG-PLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIA 174 (198)
T ss_dssp CCTTCCHHHHHHHHHT-BS-CEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH-cC-CccEEEEeecCCCCCcceEEEEEECCHHHHHHHHH
Confidence 4567999999999988 55 46777776654 33 2349999998877665443
No 93
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.77 E-value=1.1e+02 Score=20.11 Aligned_cols=54 Identities=9% Similarity=0.178 Sum_probs=35.4
Q ss_pred CeEEEE--EecCCCHHHHHHHHHhHcCCceeeEEEeeCCCC-eeeEEEEcCCCCcHHHH
Q 030945 106 NTLVFI--VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDG-TKKAYVRLTPDSDALDV 161 (168)
Q Consensus 106 NtlvFi--Vd~kAnK~qIKqAVkklydV~V~kVNTli~p~g-~KKAyV~La~d~dAlDv 161 (168)
++-+|+ ++...+..+|++.++.+ | .|..|..+..+++ .--|||.+....+|...
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~-G-~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A 71 (103)
T 2cqi_A 15 PRTLYVGNLSRDVTEVLILQLFSQI-G-PCKSCKMITEHTSNDPYCFVEFYEHRDAAAA 71 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHH-S-CEEEEEEECCCCSSCCEEEEEESSHHHHHHH
T ss_pred CCEEEEeCCCccCCHHHHHHHHHhc-C-CEeEEEEEecCCCCCCEEEEEECCHHHHHHH
Confidence 344555 45678999999999874 5 4666766554332 22599999866555443
No 94
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=30.70 E-value=58 Score=23.17 Aligned_cols=47 Identities=23% Similarity=0.321 Sum_probs=34.1
Q ss_pred EEecCCCHHHHHHHHHhHcCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHH
Q 030945 111 IVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDV 161 (168)
Q Consensus 111 iVd~kAnK~qIKqAVkklydV~V~kVNTli~p~g~KKAyV~La~d~dAlDv 161 (168)
-++...+..+|++.+.. || .|..|..+..+.| -|||.+....+|...
T Consensus 80 nl~~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~g--~afV~f~~~~~a~~A 126 (150)
T 2i2y_A 80 NLGNNGNKTELERAFGY-YG-PLRSVWVARNPPG--FAFVEFEDPRDAADA 126 (150)
T ss_dssp SCCSCCSCHHHHHHHHH-HS-CEEEEEECSSSCS--EEEEEESSHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHh-hC-CEEEEEEeeCCCc--EEEEEECCHHHHHHH
Confidence 35668899999999988 56 5777776655456 499999876655443
No 95
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=30.67 E-value=68 Score=21.15 Aligned_cols=54 Identities=19% Similarity=0.270 Sum_probs=35.3
Q ss_pred eEEEE--EecCCCHHHHHHHHHhHcCCceeeEEEeeCCC-C--eeeEEEEcCCCCcHHHHH
Q 030945 107 TLVFI--VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-G--TKKAYVRLTPDSDALDVA 162 (168)
Q Consensus 107 tlvFi--Vd~kAnK~qIKqAVkklydV~V~kVNTli~p~-g--~KKAyV~La~d~dAlDvA 162 (168)
+-+|+ ++...+..+|++.++.+ | .|..|..+..+. | .--|||++....+|....
T Consensus 14 ~~l~V~nlp~~~t~~~l~~~F~~~-G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~ 72 (106)
T 2dgp_A 14 IKLFIGQIPRNLDEKDLKPLFEEF-G-KIYELTVLKDRFTGMHKGCAFLTYCERESALKAQ 72 (106)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHHH-S-CCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc-C-CeeEEEEEecCCCCCcceEEEEEECCHHHHHHHH
Confidence 33444 45689999999999985 4 466676655433 1 124999998766655443
No 96
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.65 E-value=82 Score=21.22 Aligned_cols=50 Identities=8% Similarity=0.147 Sum_probs=32.9
Q ss_pred EEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCCC-Ce--eeEEEEcCCCCcHHH
Q 030945 109 VFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-GT--KKAYVRLTPDSDALD 160 (168)
Q Consensus 109 vFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p~-g~--KKAyV~La~d~dAlD 160 (168)
|--++...+..+|++.++. || .|..|..+..+. |. --|||++....+|..
T Consensus 22 V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ 74 (116)
T 2cqd_A 22 VGGLPYHTTDASLRKYFEG-FG-DIEEAVVITDRQTGKSRGYGFVTMADRAAAER 74 (116)
T ss_dssp EECCCSSCCHHHHHHHHHT-TS-CEEEEEESCCSSSCCCCSEEEEEESSHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHh-CC-CeeEEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 3335668999999999987 45 366776655432 11 159999986655443
No 97
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=30.53 E-value=58 Score=21.62 Aligned_cols=36 Identities=11% Similarity=0.209 Sum_probs=31.3
Q ss_pred CCeEEEEEecCCCHHHHHHHHHhHcCCceeeEEEee
Q 030945 105 NNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLI 140 (168)
Q Consensus 105 nNtlvFiVd~kAnK~qIKqAVkklydV~V~kVNTli 140 (168)
..++.+.|+...+=.++|+.++..+|+.+.....+.
T Consensus 10 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 45 (88)
T 4fbj_B 10 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 45 (88)
T ss_dssp CCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEE
Confidence 468899999999999999999999999998776543
No 98
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.47 E-value=75 Score=20.91 Aligned_cols=50 Identities=10% Similarity=0.059 Sum_probs=33.9
Q ss_pred EEecCCCHHHHHHHHHhHcCCceeeEEEeeCCC-Cee--eEEEEcCCCCcHHHHH
Q 030945 111 IVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-GTK--KAYVRLTPDSDALDVA 162 (168)
Q Consensus 111 iVd~kAnK~qIKqAVkklydV~V~kVNTli~p~-g~K--KAyV~La~d~dAlDvA 162 (168)
-++...+..+|++.++. || .|..|..+..+. |.- -|||++....+|....
T Consensus 22 nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 74 (105)
T 1x5u_A 22 GLDEKVSEPLLWELFLQ-AG-PVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 74 (105)
T ss_dssp CCCTTCCHHHHHHHHHT-TS-CEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHh-cC-CeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHH
Confidence 35668999999999988 45 566776655432 211 4999998776655443
No 99
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=30.22 E-value=70 Score=21.16 Aligned_cols=36 Identities=8% Similarity=0.184 Sum_probs=31.4
Q ss_pred CCeEEEEEecCCCHHHHHHHHHhHcCCceeeEEEee
Q 030945 105 NNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLI 140 (168)
Q Consensus 105 nNtlvFiVd~kAnK~qIKqAVkklydV~V~kVNTli 140 (168)
..++.+.|+...+=.++|+.|+..+|+.+.....+.
T Consensus 27 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 62 (91)
T 3v6c_B 27 GTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 62 (91)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEE
Confidence 468899999999999999999999999998876543
No 100
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=30.19 E-value=58 Score=22.09 Aligned_cols=35 Identities=11% Similarity=0.218 Sum_probs=31.0
Q ss_pred CCeEEEEEecCCCHHHHHHHHHhHcCCceeeEEEe
Q 030945 105 NNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTL 139 (168)
Q Consensus 105 nNtlvFiVd~kAnK~qIKqAVkklydV~V~kVNTl 139 (168)
..++.|.|+...+=.++|+.|+..+++.+.....+
T Consensus 32 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi 66 (98)
T 4hcn_B 32 GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI 66 (98)
T ss_dssp CCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEE
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEE
Confidence 46889999999999999999999999999887654
No 101
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=29.86 E-value=89 Score=20.32 Aligned_cols=35 Identities=23% Similarity=0.357 Sum_probs=31.0
Q ss_pred CCeEEEEEecCCCHHHHHHHHHhHcCCceeeEEEe
Q 030945 105 NNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTL 139 (168)
Q Consensus 105 nNtlvFiVd~kAnK~qIKqAVkklydV~V~kVNTl 139 (168)
..++.|.|+...+=.++|+.|+..+|+.+.....+
T Consensus 27 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi 61 (88)
T 4eew_A 27 SQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLI 61 (88)
T ss_dssp SCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEE
Confidence 46888999999999999999999999999887544
No 102
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.79 E-value=71 Score=22.65 Aligned_cols=50 Identities=8% Similarity=0.188 Sum_probs=34.5
Q ss_pred EEEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHHH
Q 030945 108 LVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVA 162 (168)
Q Consensus 108 lvFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p~g~KKAyV~La~d~dAlDvA 162 (168)
||=-++..++..+|++.++. || +|..|..+ +..| =|||.+....+|.+..
T Consensus 20 fV~nLp~~vte~dL~~lF~~-fG-~V~~v~i~-~~kG--faFVeF~~~~~A~~Ai 69 (105)
T 1sjq_A 20 HIRKLPIDVTEGEVISLGLP-FG-KVTNLLML-KGKN--QAFIEMNTEEAANTMV 69 (105)
T ss_dssp EECSCCTTSCHHHHHHHHHH-HC-CEEEEEEE-TTTT--EEEEEESSHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHh-cC-CEEEEEEE-cCCC--EEEEEECCHHHHHHHH
Confidence 33345567899999999987 67 47777654 3234 4999998776665543
No 103
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=29.74 E-value=1.5e+02 Score=22.59 Aligned_cols=62 Identities=13% Similarity=0.206 Sum_probs=38.6
Q ss_pred hhhhcCCeEEEEEe----cCCCHHHHHHHHHhHcCCceee--EEEeeC-CC-CeeeEEEEcCCCCcHHHHHHhh
Q 030945 100 KKIEDNNTLVFIVD----IRADKKKIKDAVKKMYDIQAKK--VNTLIR-PD-GTKKAYVRLTPDSDALDVANKI 165 (168)
Q Consensus 100 k~~E~nNtlvFiVd----~kAnK~qIKqAVkklydV~V~k--VNTli~-p~-g~KKAyV~La~d~dAlDvAnki 165 (168)
.++.. .+++|.|. ...+|.||++.+-++|+++..- |-.+.. .| |.=..|... ||.+|.|.++
T Consensus 16 ~LL~R-ke~v~dV~HpG~aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I---Yds~d~akk~ 85 (135)
T 3u5c_Y 16 PLLAR-KQFVVDVLHPNRANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV---YNSVAEAKKF 85 (135)
T ss_dssp GGGTE-EEEEEEEECSSSCCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE---ESSHHHHHHH
T ss_pred cCcCc-EEEEEEEEeCCCCCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE---eCCHHHHHhc
Confidence 34443 47777774 3477999999999999986433 332222 23 334444444 5668887764
No 104
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=29.61 E-value=62 Score=23.62 Aligned_cols=49 Identities=8% Similarity=0.055 Sum_probs=35.2
Q ss_pred EEecCCCHHHHHHHHHhHcCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHHH
Q 030945 111 IVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVA 162 (168)
Q Consensus 111 iVd~kAnK~qIKqAVkklydV~V~kVNTli~p~g~KKAyV~La~d~dAlDvA 162 (168)
-++...+..+|++.+... |..|..|..+-...| -|||++....+|....
T Consensus 127 nl~~~~~~~~l~~~f~~~-G~~v~~v~i~~~~~g--~afV~f~~~~~A~~A~ 175 (198)
T 1qm9_A 127 NIPPSVSEEDLKVLFSSN-GGVVKGFKFFQKDRK--MALIQMGSVEEAVQAL 175 (198)
T ss_dssp CCCTTCCHHHHHHHHHHT-TSCCCEEEESSTTSS--CEEEECSSHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHc-CCCceEEEEEeCCCc--EEEEEeCCHHHHHHHH
Confidence 345678999999999884 777777775433334 6999998776655443
No 105
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=29.50 E-value=79 Score=21.46 Aligned_cols=53 Identities=8% Similarity=0.146 Sum_probs=35.4
Q ss_pred EEEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCCC-Ce--eeEEEEcCCCCcHHHHH
Q 030945 108 LVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-GT--KKAYVRLTPDSDALDVA 162 (168)
Q Consensus 108 lvFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p~-g~--KKAyV~La~d~dAlDvA 162 (168)
+|--++...+..+|++.++. || .|..|..+..++ |. --|||++....+|....
T Consensus 29 fV~nLp~~~te~~L~~~F~~-~G-~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai 84 (109)
T 2rs2_A 29 FIGGLSWQTTQEGLREYFGQ-FG-EVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL 84 (109)
T ss_dssp EEESCCTTCCHHHHHHHHTT-TS-CEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHc-cC-CeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHH
Confidence 34445678999999999987 55 467777665443 21 14999998766655443
No 106
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=29.41 E-value=69 Score=20.61 Aligned_cols=35 Identities=11% Similarity=0.222 Sum_probs=30.7
Q ss_pred CCeEEEEEecCCCHHHHHHHHHhHcCCceeeEEEe
Q 030945 105 NNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTL 139 (168)
Q Consensus 105 nNtlvFiVd~kAnK~qIKqAVkklydV~V~kVNTl 139 (168)
..++.|.|+...+=.++|+.++..+|+.+.....+
T Consensus 22 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~ 56 (88)
T 3dbh_I 22 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI 56 (88)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEE
Confidence 46889999999999999999999999998777544
No 107
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=29.27 E-value=68 Score=20.74 Aligned_cols=35 Identities=6% Similarity=0.121 Sum_probs=30.8
Q ss_pred CeEEEEEecCCCHHHHHHHHHhHcCCceeeEEEee
Q 030945 106 NTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLI 140 (168)
Q Consensus 106 NtlvFiVd~kAnK~qIKqAVkklydV~V~kVNTli 140 (168)
.++.+.|+...+=.++|+.++...++.+.....+.
T Consensus 18 ~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~ 52 (87)
T 1wh3_A 18 GSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEF 52 (87)
T ss_dssp EEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEE
T ss_pred CEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEE
Confidence 57889999999999999999999999988877653
No 108
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=29.18 E-value=59 Score=25.39 Aligned_cols=75 Identities=15% Similarity=0.268 Sum_probs=46.3
Q ss_pred ccccccccccchhhhhhhhcC---------------CeEEEE--EecCCCHHHHHHHHHhHcCCceeeEEEeeCCCCe--
Q 030945 85 HYQILKYPLTTESAMKKIEDN---------------NTLVFI--VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGT-- 145 (168)
Q Consensus 85 ~~~IIk~Pl~TEkamk~~E~n---------------NtlvFi--Vd~kAnK~qIKqAVkklydV~V~kVNTli~p~g~-- 145 (168)
.|+.|.|. ..|.|...++.+ +.-+|+ ++...+..+|++.+.. ||+.|..|..+..+.|.
T Consensus 82 g~afV~f~-~~~~A~~A~~~~~~~~~g~~i~v~~~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~~i~~v~i~~~~~~~~~ 159 (292)
T 2ghp_A 82 RFARIEFA-RYDGALAAITKTHKVVGQNEIIVSHLTECTLWMTNFPPSYTQRNIRDLLQD-INVVALSIRLPSLRFNTSR 159 (292)
T ss_dssp EEEEEEES-SHHHHHHHHTTTTCEETTEECEEEECCSCEEEEECCCTTCCHHHHHHHHHH-TTCCCCEEECC-------C
T ss_pred EEEEEEEC-CHHHHHHHHHhCCcEeCCcEEEEEECCCCEEEEECCCCCCCHHHHHHHHHH-hCCCeEEEEEEeCCCCCcc
Confidence 57888777 445554444322 122343 4568999999999988 78778888776544332
Q ss_pred eeEEEEcCCCCcHHHH
Q 030945 146 KKAYVRLTPDSDALDV 161 (168)
Q Consensus 146 KKAyV~La~d~dAlDv 161 (168)
--|||.+....+|...
T Consensus 160 g~afV~f~~~~~a~~A 175 (292)
T 2ghp_A 160 RFAYIDVTSKEDARYC 175 (292)
T ss_dssp CEEEEECSSHHHHHHH
T ss_pred eEEEEEECCHHHHHHH
Confidence 2399999877665544
No 109
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.05 E-value=78 Score=19.96 Aligned_cols=36 Identities=11% Similarity=0.125 Sum_probs=31.0
Q ss_pred CCeEEEEEecCCCHHHHHHHHHhHcCCceeeEEEee
Q 030945 105 NNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLI 140 (168)
Q Consensus 105 nNtlvFiVd~kAnK~qIKqAVkklydV~V~kVNTli 140 (168)
..++.+.|+...+=.++|+.++..+|+.+.....+.
T Consensus 17 g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~ 52 (81)
T 2dzi_A 17 GRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLF 52 (81)
T ss_dssp SCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEE
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE
Confidence 357889999999999999999999999887776554
No 110
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=29.02 E-value=81 Score=24.59 Aligned_cols=51 Identities=12% Similarity=0.283 Sum_probs=37.4
Q ss_pred EecCCCHHHHHHHHHhHcCCceeeEEEeeCCCCee--eEEEEcCCCCcHHHHHHh
Q 030945 112 VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTK--KAYVRLTPDSDALDVANK 164 (168)
Q Consensus 112 Vd~kAnK~qIKqAVkklydV~V~kVNTli~p~g~K--KAyV~La~d~dAlDvAnk 164 (168)
++...+..+|++.+.. || .|..|..+..+.|.. -|||.+....+|......
T Consensus 104 l~~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~ 156 (261)
T 3sde_A 104 LSPVVSNELLEQAFSQ-FG-PVEKAVVVVDDRGRATGKGFVEFAAKPPARKALER 156 (261)
T ss_dssp CCTTCCHHHHHHHHGG-GS-CEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHh-cC-CeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHH
Confidence 4567899999999976 67 788888776666543 489999877666554443
No 111
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=28.77 E-value=17 Score=26.97 Aligned_cols=46 Identities=22% Similarity=0.354 Sum_probs=32.8
Q ss_pred EecCCCHHHHHHHHHhHcCCceeeEEEeeCCCCee--eEEEEcCCCCcHHH
Q 030945 112 VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTK--KAYVRLTPDSDALD 160 (168)
Q Consensus 112 Vd~kAnK~qIKqAVkklydV~V~kVNTli~p~g~K--KAyV~La~d~dAlD 160 (168)
++..++..+|++.++. |+ +..|..+..++|.- -|||.+....||..
T Consensus 54 Lp~~~te~dL~~~F~~-~G--i~~v~i~~d~~g~srGfaFV~F~~~e~A~~ 101 (139)
T 2hgn_A 54 LPYKATENDIYNFFSP-LN--PVRVHIEIGPDGRVTGEADVEFATHEEAVA 101 (139)
T ss_dssp CCTTCCHHHHHHHHCS-CC--CSEEECCCSSSSCSSCCCEEECSHHHHHHH
T ss_pred CCCCCCHHHHHHHHHh-cC--CeEEEEEECCCCCCceEEEEEeCCHHHHHH
Confidence 5668999999999987 67 34777766555432 39999986655443
No 112
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=28.62 E-value=99 Score=20.96 Aligned_cols=50 Identities=4% Similarity=0.243 Sum_probs=34.0
Q ss_pred EEecCCCHHHHHHHHHhHcCCceeeEEEeeCCC-Ce--eeEEEEcCCCCcHHHHH
Q 030945 111 IVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-GT--KKAYVRLTPDSDALDVA 162 (168)
Q Consensus 111 iVd~kAnK~qIKqAVkklydV~V~kVNTli~p~-g~--KKAyV~La~d~dAlDvA 162 (168)
-++...+..+|++.++. || .|..|..+..+. |. --|||.+....+|....
T Consensus 33 nLp~~~te~~l~~~F~~-~G-~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai 85 (108)
T 2jrs_A 33 SLHFNITEDMLRGIFEP-FG-RIESIQLMMDSETGRSKGYGFITFSDSECAKKAL 85 (108)
T ss_dssp CCCSSCCHHHHHHHHTT-TS-CEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHh-cC-CeEEEEEEEcCCCCccceEEEEEECCHHHHHHHH
Confidence 34567899999999976 55 577777765443 22 25999998776655443
No 113
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=28.55 E-value=1.1e+02 Score=22.25 Aligned_cols=54 Identities=15% Similarity=0.250 Sum_probs=37.4
Q ss_pred EEEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCCC-C--eeeEEEEcCCCCcHHHHHH
Q 030945 108 LVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-G--TKKAYVRLTPDSDALDVAN 163 (168)
Q Consensus 108 lvFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p~-g--~KKAyV~La~d~dAlDvAn 163 (168)
++--++...+..+|++.++. || .|..|..+..+. | .--|||++....+|.....
T Consensus 129 ~v~nlp~~~t~~~l~~~f~~-~G-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 185 (216)
T 2qfj_A 129 YVASVHQDLSDDDIKSVFEA-FG-KIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVS 185 (216)
T ss_dssp EEECCCTTCCHHHHHHHHTT-SS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred EEeCCCCcCCHHHHHHHHhc-cC-CeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHH
Confidence 33345668999999999987 56 677887776542 2 2259999987766655443
No 114
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=28.53 E-value=82 Score=21.49 Aligned_cols=50 Identities=14% Similarity=0.152 Sum_probs=33.3
Q ss_pred eEEEE--EecCCCHHHHHHHHHhHcCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHH
Q 030945 107 TLVFI--VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDV 161 (168)
Q Consensus 107 tlvFi--Vd~kAnK~qIKqAVkklydV~V~kVNTli~p~g~KKAyV~La~d~dAlDv 161 (168)
+-+|+ ++...+..+|++.+.. || .|..|... ...|+ |||.+....+|...
T Consensus 11 ~~l~V~nLp~~~te~~L~~~F~~-~G-~i~~v~i~-~~~g~--afV~f~~~~~A~~A 62 (111)
T 1whx_A 11 TVILAKNLPAGTLAAEIQETFSR-FG-SLGRVLLP-EGGIT--AIVEFLEPLEARKA 62 (111)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHT-TS-CEEEEECC-SSSSC--EEEEESCHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHh-cC-CEEEEEEe-CCCCE--EEEEeCCHHHHHHH
Confidence 34444 5678999999999987 56 45555533 33454 99999876665443
No 115
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=27.70 E-value=61 Score=22.07 Aligned_cols=23 Identities=4% Similarity=0.242 Sum_probs=20.0
Q ss_pred eEEEEEecCCCHHHHHHHHHhHc
Q 030945 107 TLVFIVDIRADKKKIKDAVKKMY 129 (168)
Q Consensus 107 tlvFiVd~kAnK~qIKqAVkkly 129 (168)
-++|++++..+-.|++..++++=
T Consensus 47 E~m~Il~P~l~ee~~~~~vek~~ 69 (77)
T 3zzp_A 47 EVNIVLNPNLDQSQLQNEKEIIQ 69 (77)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
Confidence 34899999999999999998863
No 116
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=27.42 E-value=85 Score=19.54 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=30.7
Q ss_pred CeEEEEEecCCCHHHHHHHHHhHcCCceeeEEEee
Q 030945 106 NTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLI 140 (168)
Q Consensus 106 NtlvFiVd~kAnK~qIKqAVkklydV~V~kVNTli 140 (168)
.++.+.|+...+=.++|+.++...|+.+.....+.
T Consensus 14 ~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~ 48 (77)
T 2bwf_A 14 DKWEVNVAPESTVLQFKEAINKANGIPVANQRLIY 48 (77)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEE
Confidence 47889999999999999999999999988877653
No 117
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.29 E-value=26 Score=22.65 Aligned_cols=47 Identities=15% Similarity=0.087 Sum_probs=32.6
Q ss_pred EEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCCCCeeeEEEEcCCCCcHH
Q 030945 109 VFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDAL 159 (168)
Q Consensus 109 vFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p~g~KKAyV~La~d~dAl 159 (168)
|--++...+..+|++.+.. || .|..|..+....|+ |||.+....+|.
T Consensus 10 V~nLp~~~te~~l~~~F~~-~G-~i~~v~i~~~~~g~--afV~f~~~~~a~ 56 (88)
T 1wf0_A 10 VGRCTGDMTEDELREFFSQ-YG-DVMDVFIPKPFRAF--AFVTFADDQIAQ 56 (88)
T ss_dssp EESCCSSSCHHHHHHHSTT-TS-CCCEEECCSSCCSC--CEEECSCHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHH-cC-CeeEEEEecCCCCE--EEEEECCHHHHH
Confidence 3345678999999998876 45 36677665444564 999998665553
No 118
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=27.28 E-value=1.3e+02 Score=19.48 Aligned_cols=51 Identities=10% Similarity=0.130 Sum_probs=33.8
Q ss_pred eEEEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHHH
Q 030945 107 TLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVA 162 (168)
Q Consensus 107 tlvFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p~g~KKAyV~La~d~dAlDvA 162 (168)
-+|--++...+..+|++.++. || .|..|.... ..| -|||.+....+|....
T Consensus 20 l~V~nlp~~~t~~~l~~~F~~-~G-~v~~v~~~~-~~g--~afV~f~~~~~A~~A~ 70 (97)
T 1why_A 20 LWVGGLGPNTSLAALAREFDR-FG-SIRTIDHVK-GDS--FAYIQYESLDAAQAAC 70 (97)
T ss_dssp EEEECCCSSCCHHHHHHHHHT-TS-CEEEEEECS-SSC--CEEEEESSHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEeC-CCC--EEEEEECCHHHHHHHH
Confidence 344446678899999999987 45 366665442 233 6999998776655443
No 119
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.81 E-value=78 Score=20.64 Aligned_cols=47 Identities=6% Similarity=0.222 Sum_probs=32.5
Q ss_pred EecCCCHHHHHHHHHhHcCCceeeEEEeeCCC-Ce--eeEEEEcCCCCcHHH
Q 030945 112 VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-GT--KKAYVRLTPDSDALD 160 (168)
Q Consensus 112 Vd~kAnK~qIKqAVkklydV~V~kVNTli~p~-g~--KKAyV~La~d~dAlD 160 (168)
++...+..+|++.++. || .|..|..+..++ |. --|||.+....+|..
T Consensus 18 lp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ 67 (99)
T 2dgs_A 18 IPHNCGETELREYFKK-FG-VVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 67 (99)
T ss_dssp CCSSCCHHHHHHHHSS-SS-CEEEEEECCCTTTCSCCSEEEEEESSHHHHHH
T ss_pred CCCCCCHHHHHHHHHh-cC-CeEEEEEEeCCCCCCCCceEEEEECCHHHHHH
Confidence 5668999999999987 55 577777665432 21 249999986655443
No 120
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=26.47 E-value=1.2e+02 Score=21.08 Aligned_cols=33 Identities=15% Similarity=0.303 Sum_probs=26.5
Q ss_pred eEEEEEecCCCHHHHHHHHHhH------cCCceeeEEEe
Q 030945 107 TLVFIVDIRADKKKIKDAVKKM------YDIQAKKVNTL 139 (168)
Q Consensus 107 tlvFiVd~kAnK~qIKqAVkkl------ydV~V~kVNTl 139 (168)
-++|++++..+..|++..++++ .|-.|.++..+
T Consensus 5 E~~~Il~p~l~~e~~~~~~~~~~~~i~~~gg~i~~~e~w 43 (101)
T 1cqm_A 5 EVNIVLNPNLDQSQLALEKEIIQRALENYGARVEKVAIL 43 (101)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEee
Confidence 3689999999999999888876 46667777654
No 121
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=26.33 E-value=1.1e+02 Score=21.13 Aligned_cols=54 Identities=19% Similarity=0.236 Sum_probs=36.1
Q ss_pred EEEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCC-CCe--eeEEEEcCCCCcHHHHHH
Q 030945 108 LVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRP-DGT--KKAYVRLTPDSDALDVAN 163 (168)
Q Consensus 108 lvFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p-~g~--KKAyV~La~d~dAlDvAn 163 (168)
++--++...+..+|++.++. || .|..|..+..+ +|. --|||++....+|....+
T Consensus 93 ~v~nl~~~~t~~~l~~~f~~-~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 149 (168)
T 1b7f_A 93 YVTNLPRTITDDQLDTIFGK-YG-SIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAIS 149 (168)
T ss_dssp EEESCCTTCCHHHHHHHHTS-SS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHhhhc-CC-cEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHH
Confidence 34445667999999999977 55 56677766544 332 249999987766655433
No 122
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=26.06 E-value=91 Score=20.88 Aligned_cols=36 Identities=11% Similarity=0.213 Sum_probs=31.0
Q ss_pred CCeEEEEEecCCCHHHHHHHHHhHcCCceeeEEEee
Q 030945 105 NNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLI 140 (168)
Q Consensus 105 nNtlvFiVd~kAnK~qIKqAVkklydV~V~kVNTli 140 (168)
..++.+.|+...+=.++|+.|+..+|+.+.....+.
T Consensus 10 g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~ 45 (98)
T 1yx5_B 10 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (98)
T ss_dssp SCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEE
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE
Confidence 357889999999999999999999999988776554
No 123
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=25.28 E-value=1.2e+02 Score=19.56 Aligned_cols=49 Identities=10% Similarity=0.246 Sum_probs=33.3
Q ss_pred EecCCCHHHHHHHHHhHcCCceeeEEEeeCCC-C--eeeEEEEcCCCCcHHHHH
Q 030945 112 VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-G--TKKAYVRLTPDSDALDVA 162 (168)
Q Consensus 112 Vd~kAnK~qIKqAVkklydV~V~kVNTli~p~-g--~KKAyV~La~d~dAlDvA 162 (168)
++...+..+|++.+.. || .|..|.....++ | .--|||++....+|....
T Consensus 10 Lp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai 61 (96)
T 2x1f_A 10 IPYDQTEEQILDLCSN-VG-PVINLKMMFDPQTGRSKGYAFIEFRDLESSASAV 61 (96)
T ss_dssp CCTTCCHHHHHHHHHT-TS-CEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHh-cC-CEEEEEEEeCCCCCccceEEEEEECCHHHHHHHH
Confidence 4567899999999987 45 466776654432 2 224999998776655443
No 124
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=24.35 E-value=1.4e+02 Score=21.21 Aligned_cols=56 Identities=14% Similarity=0.196 Sum_probs=37.6
Q ss_pred CeEEEE--EecCCCHHHHHHHHHhHcCCceeeEEEeeCCC-Ce--eeEEEEcCCCCcHHHHHH
Q 030945 106 NTLVFI--VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-GT--KKAYVRLTPDSDALDVAN 163 (168)
Q Consensus 106 NtlvFi--Vd~kAnK~qIKqAVkklydV~V~kVNTli~p~-g~--KKAyV~La~d~dAlDvAn 163 (168)
++-+|+ ++..++..+|++.++. || .|..|..+..+. |. --|||.+....+|....+
T Consensus 39 ~~~l~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~ 99 (156)
T 1h2v_Z 39 SCTLYVGNLSFYTTEEQIYELFSK-SG-DIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMR 99 (156)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGG-GS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHH
Confidence 445565 4567999999999977 45 377777766554 21 258999987666555443
No 125
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.89 E-value=79 Score=20.66 Aligned_cols=52 Identities=15% Similarity=0.144 Sum_probs=33.2
Q ss_pred EEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCCC-Ce--eeEEEEcCCCCcHHHHH
Q 030945 109 VFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-GT--KKAYVRLTPDSDALDVA 162 (168)
Q Consensus 109 vFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p~-g~--KKAyV~La~d~dAlDvA 162 (168)
|--++...+..+|++.++. || .|..|..+..+. |. --|||.+....+|....
T Consensus 17 V~nLp~~~t~~~l~~~f~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 71 (102)
T 2cqb_A 17 VGGLAEEVDDKVLHAAFIP-FG-DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAI 71 (102)
T ss_dssp EESCCSSCCHHHHHHHHTT-TS-CCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHhhc-cC-CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH
Confidence 3335678999999999988 44 455666544322 21 24999998666655443
No 126
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=23.85 E-value=87 Score=20.73 Aligned_cols=36 Identities=8% Similarity=0.169 Sum_probs=31.5
Q ss_pred CCeEEEEEecCCCHHHHHHHHHhHcCCceeeEEEee
Q 030945 105 NNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLI 140 (168)
Q Consensus 105 nNtlvFiVd~kAnK~qIKqAVkklydV~V~kVNTli 140 (168)
..++.+.|+...+=.++|+.++...|+.+.....+.
T Consensus 19 G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 54 (88)
T 1sif_A 19 GKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIF 54 (88)
T ss_dssp SCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEE
Confidence 368889999999999999999999999988877654
No 127
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.72 E-value=1.5e+02 Score=19.22 Aligned_cols=54 Identities=13% Similarity=0.185 Sum_probs=36.1
Q ss_pred eEEEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCC-CC--eeeEEEEcCCCCcHHHHH
Q 030945 107 TLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRP-DG--TKKAYVRLTPDSDALDVA 162 (168)
Q Consensus 107 tlvFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p-~g--~KKAyV~La~d~dAlDvA 162 (168)
-+|--++...+..+|++.++. || .|..|..+..+ .| .--|||++....+|....
T Consensus 11 l~V~nlp~~~~~~~l~~~f~~-~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 67 (104)
T 1p1t_A 11 VFVGNIPYEATEEQLKDIFSE-VG-PVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 67 (104)
T ss_dssp EEEESCCTTSCHHHHHHHHHT-TS-CCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHH
T ss_pred EEEeCCCCcCCHHHHHHHHHh-cC-CeeEEEEEeCCCCCccceEEEEEECCHHHHHHHH
Confidence 344446678999999999987 55 46667666544 23 235999998766655433
No 128
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=23.65 E-value=1.2e+02 Score=19.08 Aligned_cols=35 Identities=17% Similarity=0.287 Sum_probs=30.7
Q ss_pred CCeEEEEEecCCCHHHHHHHHHhHcCCceeeEEEe
Q 030945 105 NNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTL 139 (168)
Q Consensus 105 nNtlvFiVd~kAnK~qIKqAVkklydV~V~kVNTl 139 (168)
..++.|.|++..+=.++|+++....|+.+.....+
T Consensus 13 g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~ 47 (79)
T 2uyz_B 13 SSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFL 47 (79)
T ss_dssp CCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEE
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEE
Confidence 46889999999999999999999999998877653
No 129
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.39 E-value=1e+02 Score=19.78 Aligned_cols=50 Identities=8% Similarity=0.058 Sum_probs=33.0
Q ss_pred eEEEEEecCCCHHHHHHHHHhHcC-CceeeEEEeeCCCCeeeEEEEcCCCCcHHHHH
Q 030945 107 TLVFIVDIRADKKKIKDAVKKMYD-IQAKKVNTLIRPDGTKKAYVRLTPDSDALDVA 162 (168)
Q Consensus 107 tlvFiVd~kAnK~qIKqAVkklyd-V~V~kVNTli~p~g~KKAyV~La~d~dAlDvA 162 (168)
-+|--++...+..+|++.++..=. +....+ ...|+ |||.+....+|....
T Consensus 11 l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~----~~~g~--afV~f~~~~~A~~A~ 61 (93)
T 2cqh_A 11 LYIGNLSPAVTADDLRQLFGDRKLPLAGQVL----LKSGY--AFVDYPDQNWAIRAI 61 (93)
T ss_dssp EEEECCCTTCCHHHHHHHHHHTTCCCSSCEE----EETTE--EEECCSCHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHHcCCceEEEEE----cCCCE--EEEEECCHHHHHHHH
Confidence 344446778999999999988544 444333 23454 999998766655443
No 130
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=23.37 E-value=1.4e+02 Score=20.48 Aligned_cols=35 Identities=11% Similarity=0.259 Sum_probs=30.9
Q ss_pred CeEEEEEecCCCHHHHHHHHHhHcCCceeeEEEee
Q 030945 106 NTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLI 140 (168)
Q Consensus 106 NtlvFiVd~kAnK~qIKqAVkklydV~V~kVNTli 140 (168)
.++.+.|+...+=.++|+.|+...|+.+.....+.
T Consensus 35 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 69 (101)
T 2klc_A 35 EKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIF 69 (101)
T ss_dssp CEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEE
Confidence 47889999999999999999999999988877654
No 131
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=22.99 E-value=1.2e+02 Score=21.07 Aligned_cols=36 Identities=11% Similarity=0.213 Sum_probs=31.6
Q ss_pred CCeEEEEEecCCCHHHHHHHHHhHcCCceeeEEEee
Q 030945 105 NNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLI 140 (168)
Q Consensus 105 nNtlvFiVd~kAnK~qIKqAVkklydV~V~kVNTli 140 (168)
..++.|.|+...+=.++|+.++..+++.+.....+.
T Consensus 45 G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 80 (111)
T 3vdz_A 45 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 80 (111)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEE
Confidence 468899999999999999999999999998876553
No 132
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=22.98 E-value=71 Score=23.30 Aligned_cols=53 Identities=17% Similarity=0.323 Sum_probs=37.4
Q ss_pred CeEEEE--EecCCCHHHHHHHHHhHcCCc--eeeEEEeeCCCCee--eEEEEcCCCCcHH
Q 030945 106 NTLVFI--VDIRADKKKIKDAVKKMYDIQ--AKKVNTLIRPDGTK--KAYVRLTPDSDAL 159 (168)
Q Consensus 106 NtlvFi--Vd~kAnK~qIKqAVkklydV~--V~kVNTli~p~g~K--KAyV~La~d~dAl 159 (168)
+..+|+ ++..++..+|++.++. ||.- |..|..+..++|.- -|||.+....+|.
T Consensus 44 ~~~lfVgnLp~~~te~dL~~~F~~-~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~ 102 (136)
T 2hgl_A 44 GFVVKLRGLPWSCSVEDVQNFLSD-CTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVK 102 (136)
T ss_dssp TCEEEEESCCTTCCHHHHHHHTTT-CCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHH-hCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHH
Confidence 344555 4568999999999988 5653 77888777666532 4999998665543
No 133
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=22.83 E-value=91 Score=22.04 Aligned_cols=54 Identities=17% Similarity=0.260 Sum_probs=35.0
Q ss_pred eEEEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCCC-C--eeeEEEEcCCCCcHHHHH
Q 030945 107 TLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-G--TKKAYVRLTPDSDALDVA 162 (168)
Q Consensus 107 tlvFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p~-g--~KKAyV~La~d~dAlDvA 162 (168)
-+|--++...+..+|++.++. || .|..|..+..++ | .--|||++....+|....
T Consensus 49 l~V~nLp~~~te~~L~~~F~~-~G-~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai 105 (129)
T 2kxn_B 49 LGVFGLSLYTTERDLREVFSK-YG-PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAK 105 (129)
T ss_dssp BCEETCTTSCCHHHHHHHHTT-TS-CEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEecCCCCccceEEEEEECCHHHHHHHH
Confidence 334445677899999999877 45 466776654332 1 125999998766655443
No 134
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=22.47 E-value=1.5e+02 Score=19.07 Aligned_cols=52 Identities=10% Similarity=0.156 Sum_probs=35.5
Q ss_pred EEEEEecCCCHHHHHHHHHhHcCC-ceeeEEEeeCCC-Cee--eEEEEcCCCCcHHH
Q 030945 108 LVFIVDIRADKKKIKDAVKKMYDI-QAKKVNTLIRPD-GTK--KAYVRLTPDSDALD 160 (168)
Q Consensus 108 lvFiVd~kAnK~qIKqAVkklydV-~V~kVNTli~p~-g~K--KAyV~La~d~dAlD 160 (168)
+|--++...+..+|++.++. ||+ +|..|..+..+. |.- =|||.+....+|..
T Consensus 5 ~V~nL~~~~t~~~l~~~F~~-~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~ 60 (90)
T 3p5t_L 5 YIGNLTWWTTDEDLTEAVHS-LGVNDILEIKFFENRANGQSKGFALVGVGSEASSKK 60 (90)
T ss_dssp EEESCCTTCCHHHHHHHHHT-TTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHH-hCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHH
Confidence 34445668899999999977 565 788888776543 322 38999986655443
No 135
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=22.20 E-value=1.4e+02 Score=19.96 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=33.2
Q ss_pred EEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHH
Q 030945 109 VFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDV 161 (168)
Q Consensus 109 vFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p~g~KKAyV~La~d~dAlDv 161 (168)
|--++...+..+|++.+.. || .|..|.........--|||.+....+|...
T Consensus 13 V~nlp~~~t~~~l~~~F~~-~G-~v~~v~i~~~~~~~g~afV~f~~~~~A~~A 63 (115)
T 3lqv_A 13 IRNLPYKITAEEMYDIFGK-YG-PIRQIRVGNTPETRGTAYVVYEDIFDAKNA 63 (115)
T ss_dssp EESCCTTCCHHHHHHHHHT-TS-CEEEEEEECSTTTTTCEEEEESSHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHh-cC-CeEEEEEeeCCCCCcEEEEEECCHHHHHHH
Confidence 3335668899999999987 44 355665554333323599999876665443
No 136
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=22.18 E-value=1.2e+02 Score=20.08 Aligned_cols=34 Identities=12% Similarity=0.290 Sum_probs=29.9
Q ss_pred CeEEEEEecCCCHHHHHHHHHhHcCCceeeEEEe
Q 030945 106 NTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTL 139 (168)
Q Consensus 106 NtlvFiVd~kAnK~qIKqAVkklydV~V~kVNTl 139 (168)
.++.|.|+...+=.++|+.|+...++.+.....+
T Consensus 27 ~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~ 60 (96)
T 1wx8_A 27 DCHEFFLAENSNVRRFKKQISKYLHCNADRLVLI 60 (96)
T ss_dssp SEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEE
Confidence 5788999999999999999999999988776554
No 137
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=22.16 E-value=1.3e+02 Score=19.78 Aligned_cols=35 Identities=11% Similarity=0.132 Sum_probs=30.9
Q ss_pred CCeEEEEEecCCCHHHHHHHHHhHcCCceeeEEEe
Q 030945 105 NNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTL 139 (168)
Q Consensus 105 nNtlvFiVd~kAnK~qIKqAVkklydV~V~kVNTl 139 (168)
..++.+.|+...+=.++|+.|+...|+.+.....+
T Consensus 14 g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~ 48 (88)
T 2hj8_A 14 GRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT 48 (88)
T ss_dssp SCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEE
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEE
Confidence 36888999999999999999999999998877755
No 138
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=21.94 E-value=1.6e+02 Score=18.62 Aligned_cols=54 Identities=11% Similarity=0.182 Sum_probs=36.1
Q ss_pred eEEEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCCC-C--eeeEEEEcCCCCcHHHHHH
Q 030945 107 TLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-G--TKKAYVRLTPDSDALDVAN 163 (168)
Q Consensus 107 tlvFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p~-g--~KKAyV~La~d~dAlDvAn 163 (168)
-+|--++...+..+|++.+.. || .|..|.....+. | .--|||.+.... |.....
T Consensus 4 l~V~nLp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~ 60 (90)
T 2ki2_A 4 IYVGNLVYSATSEQVKELFSQ-FG-KVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIA 60 (90)
T ss_dssp EEEEEECTTSSHHHHTTTHHH-HT-CCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHH
T ss_pred EEECCCCCCCCHHHHHHHHHh-cC-CEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHH
Confidence 345557788999999999988 45 466666554432 2 225999998665 655443
No 139
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=21.87 E-value=2e+02 Score=21.00 Aligned_cols=54 Identities=7% Similarity=0.107 Sum_probs=38.0
Q ss_pred eEEEEEecCCCHHHHHHHHHhHcCC-ceeeEEEeeCCC-Cee--eEEEEcCCCCcHHHH
Q 030945 107 TLVFIVDIRADKKKIKDAVKKMYDI-QAKKVNTLIRPD-GTK--KAYVRLTPDSDALDV 161 (168)
Q Consensus 107 tlvFiVd~kAnK~qIKqAVkklydV-~V~kVNTli~p~-g~K--KAyV~La~d~dAlDv 161 (168)
-+|--++..++..+|++.|.. ||. +|..|..+..+. |.- =|||.+....+|...
T Consensus 58 lfVgnLp~~~te~~L~~~F~~-~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~A 115 (156)
T 3n9u_C 58 VYVGSFSWWTTDQQLIQVIRS-IGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKL 115 (156)
T ss_dssp EEEECCCTTCCHHHHHHHHHH-TTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHH-HCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHH
Confidence 344445668999999999976 675 899998876543 322 499999866554443
No 140
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=21.76 E-value=1.4e+02 Score=20.34 Aligned_cols=34 Identities=9% Similarity=0.222 Sum_probs=29.7
Q ss_pred eEEEEEecCCCHHHHHHHHHhHcCCceeeEEEee
Q 030945 107 TLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLI 140 (168)
Q Consensus 107 tlvFiVd~kAnK~qIKqAVkklydV~V~kVNTli 140 (168)
++.+.|+...+=.++|+.|+..+++.+.....+.
T Consensus 28 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 61 (106)
T 1wx7_A 28 KEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIF 61 (106)
T ss_dssp EEEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEE
T ss_pred cEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE
Confidence 5688999999999999999999999988777653
No 141
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=21.75 E-value=1.8e+02 Score=19.11 Aligned_cols=52 Identities=12% Similarity=0.296 Sum_probs=34.1
Q ss_pred EEEecCCCHHHHHHHHHhHcCCceeeEEEeeCCC-C--eeeEEEEcCCCCcHHHHHH
Q 030945 110 FIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-G--TKKAYVRLTPDSDALDVAN 163 (168)
Q Consensus 110 FiVd~kAnK~qIKqAVkklydV~V~kVNTli~p~-g--~KKAyV~La~d~dAlDvAn 163 (168)
--++...+..+|++.+.. || .|..|..+..+. | .--|||++....+|.....
T Consensus 21 ~nLp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 75 (111)
T 1x4h_A 21 RNLSFDSEEEALGEVLQQ-FG-DLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLA 75 (111)
T ss_dssp ESCCTTCCHHHHHHHHHT-TS-CEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHH
T ss_pred ECCCCCCCHHHHHHHHHh-cC-CeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHH
Confidence 335668999999999987 45 466666654332 1 1249999987766554443
No 142
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=21.73 E-value=95 Score=20.87 Aligned_cols=35 Identities=20% Similarity=0.193 Sum_probs=30.9
Q ss_pred CeEEEEEecCCCHHHHHHHHHhHcCCceeeEEEee
Q 030945 106 NTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLI 140 (168)
Q Consensus 106 NtlvFiVd~kAnK~qIKqAVkklydV~V~kVNTli 140 (168)
.++.|.|+...+=.++|+.|+...|+.+.....+.
T Consensus 28 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 62 (93)
T 2l7r_A 28 ELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLL 62 (93)
T ss_dssp SEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEE
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEE
Confidence 57889999999999999999999999988777654
No 143
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=21.56 E-value=79 Score=21.03 Aligned_cols=44 Identities=18% Similarity=0.144 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHhHcCCceeeEEEeeCCC-Cee--eEEEEcCCCCcHHH
Q 030945 115 RADKKKIKDAVKKMYDIQAKKVNTLIRPD-GTK--KAYVRLTPDSDALD 160 (168)
Q Consensus 115 kAnK~qIKqAVkklydV~V~kVNTli~p~-g~K--KAyV~La~d~dAlD 160 (168)
..+..+|++.+.. || .|..|..+..+. |.- -|||.+....+|..
T Consensus 23 ~~~~~~L~~~F~~-~G-~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~ 69 (100)
T 3ns6_A 23 PVLKKALTSLFSK-AG-KVVNMEFPIDEATGKTKGFLFVECGSMNDAKK 69 (100)
T ss_dssp HHHHHHHHHHHHT-TS-CEEEEECCEETTTTEECSEEEEEESSHHHHHH
T ss_pred HHHHHHHHHHHHh-cC-CEeEEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 5567788888876 56 677887766554 322 38999986655444
No 144
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=21.37 E-value=1.6e+02 Score=18.43 Aligned_cols=52 Identities=17% Similarity=0.195 Sum_probs=35.2
Q ss_pred eEEEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCCC-C--eeeEEEEcCCCCcHHH
Q 030945 107 TLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPD-G--TKKAYVRLTPDSDALD 160 (168)
Q Consensus 107 tlvFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p~-g--~KKAyV~La~d~dAlD 160 (168)
-+|--++...+..+|++.++. || .|..|.....+. | .--|||++....+|..
T Consensus 9 l~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ 63 (89)
T 3ucg_A 9 IYVGNVDYGATAEELEAHFHG-CG-SVNRVTILCDKFSGHPKGFAYIEFSDKESVRT 63 (89)
T ss_dssp EEEESCCTTCCHHHHHHHHGG-GC-CEEEEEEEESCSSSSCCEEEEEEESSTHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-CC-CEEEEEEEecCCCCCcceEEEEEECCHHHHHH
Confidence 344445668899999999987 55 467777665542 2 2359999987665443
No 145
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=21.00 E-value=1.8e+02 Score=18.86 Aligned_cols=52 Identities=10% Similarity=0.150 Sum_probs=35.6
Q ss_pred CeEEEE--EecCCCHHHHHHHHHhHcCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHHH
Q 030945 106 NTLVFI--VDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVA 162 (168)
Q Consensus 106 NtlvFi--Vd~kAnK~qIKqAVkklydV~V~kVNTli~p~g~KKAyV~La~d~dAlDvA 162 (168)
++-+|+ ++...+..+|++.++.. | .|..|... +..|+ |||.+....+|....
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~-G-~i~~~~~~-~~~g~--afV~f~~~~~A~~Ai 80 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNF-G-FILDFKHY-PEKGC--CFIKYDTHEQAAVCI 80 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTT-S-CCSEEEEE-TTTTE--EEEECSSHHHHHHHH
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhC-C-CEEEEEEe-cCCCE--EEEEECCHHHHHHHH
Confidence 445565 45689999999999874 4 35566554 45565 999998766655443
No 146
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=20.24 E-value=2.5e+02 Score=20.18 Aligned_cols=44 Identities=11% Similarity=0.128 Sum_probs=31.2
Q ss_pred cCCCHHHHHHHHHhHcCCceeeEEEeeCCCCeeeEEEEcCCCCcHHHH
Q 030945 114 IRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDV 161 (168)
Q Consensus 114 ~kAnK~qIKqAVkklydV~V~kVNTli~p~g~KKAyV~La~d~dAlDv 161 (168)
-.++..++.+.+.. || .|.+|....+ .|+ .|||.+....+|.+.
T Consensus 35 ~~vt~~~L~~~Fs~-yG-~V~~v~i~~~-~Gf-~aFVef~~~~~A~~A 78 (124)
T 2e5i_A 35 YPITVDVLYTVCNP-VG-KVQRIVIFKR-NGI-QAMVEFESVLCAQKA 78 (124)
T ss_dssp SCCCHHHHHHHHTT-TS-CEEEEEEEES-SSE-EEEEEESSHHHHHHH
T ss_pred CCCCHHHHHHHHHh-cC-CEEEEEEEeC-CCC-EEEEEECCHHHHHHH
Confidence 47888899988886 55 4777776554 354 699999876665543
No 147
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=20.10 E-value=1.5e+02 Score=25.81 Aligned_cols=52 Identities=15% Similarity=0.332 Sum_probs=33.7
Q ss_pred EEEEEecCCCHHHHHHHHHhHcCCceeeEEEeeCC-CCee--eEEEEcCCCCcHHHH
Q 030945 108 LVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRP-DGTK--KAYVRLTPDSDALDV 161 (168)
Q Consensus 108 lvFiVd~kAnK~qIKqAVkklydV~V~kVNTli~p-~g~K--KAyV~La~d~dAlDv 161 (168)
||--++..++..+|++.|.. || .|..|..+..+ .|.- -|||.+....+|...
T Consensus 106 fV~nL~~~~te~~L~~~F~~-~G-~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~A 160 (437)
T 3pgw_S 106 FVARVNYDTTESKLRREFEV-YG-PIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSA 160 (437)
T ss_pred EEeCCCCCCCHHHHHHHHHH-cC-CeeEEEeeccCCCCCccceEEEeeccHHHHHHH
Confidence 33445668899999999988 55 46666665432 2222 399999876665443
Done!