RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 030945
         (168 letters)



>d1vqos1 d.12.1.1 (S:1-81) Ribosomal protein L23 {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 81

 Score =  105 bits (264), Expect = 4e-31
 Identities = 36/80 (45%), Positives = 53/80 (66%)

Query: 86  YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGT 145
           + ++K+P  TE AM  ++  N L F VD RA K ++ DAV++ YD+  ++VNT    DG 
Sbjct: 2   WDVIKHPHVTEKAMNDMDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGE 61

Query: 146 KKAYVRLTPDSDALDVANKI 165
           KKA VRL+ D DA +VA++I
Sbjct: 62  KKAVVRLSEDDDAQEVASRI 81


>d2qamt1 d.12.1.1 (T:1-93) Ribosomal protein L23 {Escherichia coli
           [TaxId: 562]}
          Length = 93

 Score = 75.9 bits (187), Expect = 2e-19
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 13/90 (14%)

Query: 81  NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLI 140
            +    ++L+ P  +E A   +E +NT+V  V   A K +IK AV+K+++++ + VNTL+
Sbjct: 3   REERLLKVLRAPHVSEKASTAMEKSNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLV 62

Query: 141 RP-------------DGTKKAYVRLTPDSD 157
                             KKAYV L    +
Sbjct: 63  VKGKVKRHGQRIGRRSDWKKAYVTLKEGQN 92


>d2j01x1 d.12.1.1 (X:3-95) Ribosomal protein L23 {Thermus
           thermophilus [TaxId: 274]}
          Length = 93

 Score = 66.7 bits (163), Expect = 9e-16
 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 14/85 (16%)

Query: 86  YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRP--- 142
           Y ++  P+ +E A           F V  +A K +IK+AV+  + ++  KVNTL      
Sbjct: 3   YDVILAPVLSEKAYAGFA-EGKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKK 61

Query: 143 ----------DGTKKAYVRLTPDSD 157
                        KKA V++ P   
Sbjct: 62  KRLGRYLGKRPDRKKAIVQVAPGQK 86


>d2zjrq1 d.12.1.1 (Q:2-94) Ribosomal protein L23 {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 93

 Score = 66.3 bits (162), Expect = 1e-15
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 14/86 (16%)

Query: 85  HYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRP-- 142
           HY IL+ P+ +E A   +E      F V  +A K +IKDA+++ + ++   ++T+  P  
Sbjct: 2   HYDILQAPVISEKAYSAME-RGVYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGK 60

Query: 143 -----------DGTKKAYVRLTPDSD 157
                      +  KKA VRL     
Sbjct: 61  RKRVGRFIGQRNDRKKAIVRLAEGQS 86


>d2fiqa1 c.1.10.7 (A:1-420) Putative tagatose 6-phosphate kinase 1
           GatZ {Escherichia coli [TaxId: 562]}
          Length = 420

 Score = 29.8 bits (67), Expect = 0.14
 Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 48  KAKKIRTSVTFHRPKTLKKDRNPKYPRISA---PPRNKLDHYQILKYPLTTESAMKKIED 104
             +    ++  H+   + +       R+ A    P  + DH  I+ Y      A+ +  +
Sbjct: 189 HVEDAANTLRTHQKAFIARGLTEALTRVIAIVVQPGVEFDHSNIIHYQPQEAQALAQWIE 248

Query: 105 NNTLVF 110
           N  +V+
Sbjct: 249 NTRMVY 254


>d1u3da1 a.99.1.1 (A:198-497) Cryptochrome C-terminal domain {Thale
           cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 300

 Score = 26.8 bits (58), Expect = 1.4
 Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 3/78 (3%)

Query: 59  HRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKK---IEDNNTLVFIVDIR 115
            + +  K D N +Y R   P  ++L    I       ES ++       +N  + IV + 
Sbjct: 222 PQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLD 281

Query: 116 ADKKKIKDAVKKMYDIQA 133
             K ++ +A+ +M+ ++A
Sbjct: 282 EAKARLHEALSQMWQLEA 299


>d1avca1 a.65.1.1 (A:10-350) Annexin VI {Cow (Bos taurus) [TaxId:
           9913]}
          Length = 341

 Score = 24.6 bits (53), Expect = 7.4
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 3/38 (7%)

Query: 96  ESAMKKIE-DNNTLVFIVDIRA--DKKKIKDAVKKMYD 130
             AMK +   +NTL+ I+  R+  D   I++  +  Y+
Sbjct: 252 FKAMKGLGTRDNTLIRIMVSRSELDMLDIREIFRTKYE 289


>d1f06a2 d.81.1.3 (A:119-268) Diaminopimelic acid dehydrogenase
           (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}
          Length = 150

 Score = 24.0 bits (52), Expect = 8.9
 Identities = 6/20 (30%), Positives = 13/20 (65%)

Query: 109 VFIVDIRADKKKIKDAVKKM 128
            F+V   AD ++I++ ++ M
Sbjct: 79  CFVVADAADHERIENDIRTM 98


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.132    0.372 

Gapped
Lambda     K      H
   0.267   0.0578    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 606,293
Number of extensions: 26798
Number of successful extensions: 117
Number of sequences better than 10.0: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 16
Length of query: 168
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 89
Effective length of database: 1,322,926
Effective search space: 117740414
Effective search space used: 117740414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.4 bits)