BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030946
(168 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TQ1|A Chain A, Solution Structure Of At5g66040, A Putative Protein From
Arabidosis Thaliana
Length = 129
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 47/125 (37%), Gaps = 34/125 (27%)
Query: 39 LDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDXXXXXXXXXXXXXSGTEENPEFLQTGV 98
LDVR EF + H GAINV SG +N +FL+ V
Sbjct: 36 LDVRTPEEFSQGHACGAINVPYMN-------------------RGASGMSKNTDFLEQ-V 75
Query: 99 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF 158
S + IIV C +GG RS+ A L+ G+ V + GG W
Sbjct: 76 SSHFGQSDNIIVGCQSGG--------------RSIKATTDLLHAGFTGVKDIVGGYSAWA 121
Query: 159 KEELP 163
K LP
Sbjct: 122 KNGLP 126
>pdb|1QXN|A Chain A, Solution Structure Of The 30 Kda Polysulfide-Sulfur
Transferase Homodimer From Wolinella Succinogenes
pdb|1QXN|B Chain B, Solution Structure Of The 30 Kda Polysulfide-Sulfur
Transferase Homodimer From Wolinella Succinogenes
Length = 137
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 68/163 (41%), Gaps = 49/163 (30%)
Query: 12 EVFYLLQVRSVEA-------KEALRLQKEN-NFVILDVRPEAEFKEAHPPGAINVQIYRL 63
+ + QV++ +A K+A +L +EN + ++DVR E K P +V+ Y+
Sbjct: 8 DATFKAQVKAAKADMVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKP---DVKNYKH 64
Query: 64 IKEWTAWDXXXXXXXXXXXXXSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQN 123
+ S + P ++G LD + ++V C T
Sbjct: 65 M--------------------SRGKLEPLLAKSG----LDPEKPVVVFCKTA-------- 92
Query: 124 LPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVS 166
+R+ +A L G+K +Y+ EGG+ KW +E LP +
Sbjct: 93 ------ARAALAGKTLREYGFKTIYNSEGGMDKWLEEGLPSLD 129
>pdb|1URH|A Chain A, The "rhodanese" Fold And Catalytic Mechanism Of
3-Mercaptopyruvate Sulfotransferases: Crystal Structure
Of Ssea From Escherichia Coli
pdb|1URH|B Chain B, The "rhodanese" Fold And Catalytic Mechanism Of
3-Mercaptopyruvate Sulfotransferases: Crystal Structure
Of Ssea From Escherichia Coli
Length = 280
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 11/56 (19%)
Query: 22 VEAKEALRLQKENNFVILDVRPEAEF-----------KEAHPPGAINVQIYRLIKE 66
V+ + L EN I+D RP A F + H PGA+NV L++E
Sbjct: 154 VKVTDVLLASHENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVRE 209
>pdb|3TP9|A Chain A, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
pdb|3TP9|B Chain B, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
Length = 474
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 26 EALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAW 70
E +R +E V+LDVRP F + H G++N+ + W W
Sbjct: 278 ERVRAWREGG-VVLDVRPADAFAKRHLAGSLNIPWNKSFVTWAGW 321
Score = 30.4 bits (67), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 14/60 (23%)
Query: 104 KDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELP 163
+D + V C TGG RS IAA LL +G +V + GG W + P
Sbjct: 426 RDGSVCVYCRTGG--------------RSAIAASLLRAHGVGDVRNXVGGYEAWRGKGFP 471
>pdb|3G5J|A Chain A, Crystal Structure Of N-Terminal Domain Of Putative
AtpGTP BINDING Protein From Clostridium Difficile 630
pdb|3G5J|B Chain B, Crystal Structure Of N-Terminal Domain Of Putative
AtpGTP BINDING Protein From Clostridium Difficile 630
Length = 134
Score = 30.0 bits (66), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 22 VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYR 62
++ ++AL+L K + +DVR E E++E H AIN +++
Sbjct: 7 IKIEKALKLDK---VIFVDVRTEGEYEEDHILNAINXPLFK 44
>pdb|2K0Z|A Chain A, Solution Nmr Structure Of Protein Hp1203 From Helicobacter
Pylori 26695. Northeast Structural Genomics Consortium
(Nesg) Target Pt1ONTARIO CENTER FOR STRUCTURAL
PROTEOMICS TARGET HP1203
Length = 110
Score = 29.6 bits (65), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 45/126 (35%)
Query: 34 NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDXXXXXXXXXXXXXSGTEENPEF 93
N+F+++DVR E++E H P A + + + E+ +F
Sbjct: 15 NDFIVVDVRELDEYEELHLPNATLISV------------------------NDQEKLADF 50
Query: 94 LQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGG 153
L KD K+++ C G R+L AA + GY Y+LEG
Sbjct: 51 LSQH------KDKKVLLHCRAG--------------RRALDAAKSMHELGY-TPYYLEGN 89
Query: 154 LYKWFK 159
+Y + K
Sbjct: 90 VYDFEK 95
>pdb|3D1P|A Chain A, Atomic Resolution Structure Of Uncharacterized Protein
From Saccharomyces Cerevisiae
Length = 139
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 17 LQVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWD 71
+Q S E + + + + N V++DVR +E+ H P +INV YR + A D
Sbjct: 22 IQSYSFEDXKRIVGKHDPNVVLVDVREPSEYSIVHIPASINVP-YRSHPDAFALD 75
>pdb|1GN0|A Chain A, Escherichia Coli Glpe Sulfurtransferase Soaked With Kcn
Length = 108
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 14/64 (21%)
Query: 103 DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEEL 162
D D ++V C G + K AA L+ GY VY ++GG W ++
Sbjct: 56 DFDTPVMVMCYHGNSSKG--------------AAQYLLQQGYDVVYSIDGGFEAWQRQFP 101
Query: 163 PEVS 166
EV+
Sbjct: 102 AEVA 105
>pdb|3GK5|A Chain A, Crystal Structure Of Rhodanese-Related Protein
(Tvg0868615) From Thermoplasma Volcanium, Northeast
Structural Genomics Consortium Target Tvr109a
Length = 108
Score = 26.2 bits (56), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 15/66 (22%)
Query: 102 LDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEE 161
L++D K V CA G +RS A L G N+ +EGG+ W +E
Sbjct: 52 LERDKKYAVICAHG--------------NRSAAAVEFLSQLGL-NIVDVEGGIQSWIEEG 96
Query: 162 LPEVSE 167
P V E
Sbjct: 97 YPVVLE 102
>pdb|1YT8|A Chain A, Crystal Structure Of Thiosulfate Sulfurtransferase From
Pseudomonas Aeruginosa
Length = 539
Score = 26.2 bits (56), Expect = 8.6, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 40 DVRPEAEFKEAHPPGAINVQIYRL 63
DVR E F +AHP A N+ + RL
Sbjct: 28 DVREEDPFAQAHPLFAANLPLSRL 51
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,785,339
Number of Sequences: 62578
Number of extensions: 167891
Number of successful extensions: 314
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 299
Number of HSP's gapped (non-prelim): 15
length of query: 168
length of database: 14,973,337
effective HSP length: 92
effective length of query: 76
effective length of database: 9,216,161
effective search space: 700428236
effective search space used: 700428236
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (23.1 bits)