Query 030946
Match_columns 168
No_of_seqs 147 out of 1032
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 06:56:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030946.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030946hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1530 Rhodanese-related sulf 99.9 4.9E-24 1.1E-28 150.9 10.7 117 16-165 19-135 (136)
2 cd01533 4RHOD_Repeat_2 Member 99.9 6E-24 1.3E-28 148.6 11.0 101 17-161 7-109 (109)
3 PRK00162 glpE thiosulfate sulf 99.9 9.9E-24 2.1E-28 147.3 11.3 103 18-166 3-105 (108)
4 cd01527 RHOD_YgaP Member of th 99.9 1.3E-23 2.7E-28 144.3 10.6 98 20-164 2-99 (99)
5 cd01518 RHOD_YceA Member of th 99.9 5.4E-24 1.2E-28 146.9 8.5 99 21-159 3-101 (101)
6 PLN02160 thiosulfate sulfurtra 99.9 1.8E-23 3.9E-28 152.2 11.2 117 17-168 12-130 (136)
7 cd01519 RHOD_HSP67B2 Member of 99.9 1.8E-22 3.9E-27 139.9 10.2 103 23-158 2-105 (106)
8 cd01448 TST_Repeat_1 Thiosulfa 99.9 1.4E-22 3E-27 144.1 9.2 114 22-161 2-122 (122)
9 cd01521 RHOD_PspE2 Member of t 99.9 4.5E-22 9.7E-27 139.5 11.6 103 18-164 6-110 (110)
10 cd01523 RHOD_Lact_B Member of 99.9 1.6E-22 3.4E-27 139.2 9.0 98 22-158 1-99 (100)
11 cd01534 4RHOD_Repeat_3 Member 99.9 2.9E-22 6.3E-27 136.8 10.2 93 22-159 1-95 (95)
12 cd01520 RHOD_YbbB Member of th 99.9 6.5E-22 1.4E-26 142.4 11.5 121 22-159 1-126 (128)
13 cd01526 RHOD_ThiF Member of th 99.9 5.2E-22 1.1E-26 141.6 10.6 114 17-166 5-120 (122)
14 TIGR03865 PQQ_CXXCW PQQ-depend 99.9 5.5E-22 1.2E-26 148.3 10.9 117 16-164 32-162 (162)
15 cd01447 Polysulfide_ST Polysul 99.9 5.1E-22 1.1E-26 136.7 9.7 102 22-161 1-103 (103)
16 cd01444 GlpE_ST GlpE sulfurtra 99.9 6.8E-22 1.5E-26 134.6 10.1 92 21-158 1-95 (96)
17 cd01524 RHOD_Pyr_redox Member 99.9 9.4E-22 2E-26 133.0 9.7 89 22-158 1-89 (90)
18 cd01528 RHOD_2 Member of the R 99.9 1.2E-21 2.5E-26 135.2 10.0 96 22-160 2-99 (101)
19 cd01525 RHOD_Kc Member of the 99.9 1.1E-21 2.3E-26 135.9 9.5 102 22-158 1-104 (105)
20 cd01449 TST_Repeat_2 Thiosulfa 99.9 5.6E-22 1.2E-26 140.0 7.0 107 22-159 1-118 (118)
21 PF00581 Rhodanese: Rhodanese- 99.9 1.4E-21 3.1E-26 135.8 8.5 108 23-160 1-113 (113)
22 smart00450 RHOD Rhodanese Homo 99.9 4.5E-21 9.7E-26 129.8 10.4 98 34-163 3-100 (100)
23 PLN02723 3-mercaptopyruvate su 99.9 2.3E-21 4.9E-26 159.2 10.3 123 19-167 21-152 (320)
24 cd01530 Cdc25 Cdc25 phosphatas 99.9 3.7E-21 8.1E-26 137.3 10.1 99 20-158 2-120 (121)
25 cd01522 RHOD_1 Member of the R 99.9 3.2E-21 7E-26 136.7 9.4 103 22-160 1-105 (117)
26 PRK11493 sseA 3-mercaptopyruva 99.9 2.8E-21 6.2E-26 156.0 10.2 122 20-167 5-136 (281)
27 cd01535 4RHOD_Repeat_4 Member 99.8 7.1E-21 1.5E-25 139.9 10.2 95 27-167 2-97 (145)
28 cd01445 TST_Repeats Thiosulfat 99.8 4.7E-21 1E-25 139.8 9.0 111 22-158 1-137 (138)
29 PRK09629 bifunctional thiosulf 99.8 6.4E-21 1.4E-25 167.8 10.8 122 20-167 9-130 (610)
30 PLN02723 3-mercaptopyruvate su 99.8 5.8E-21 1.2E-25 156.9 9.0 115 22-167 192-318 (320)
31 PRK11493 sseA 3-mercaptopyruva 99.8 7.3E-21 1.6E-25 153.6 8.1 133 4-168 123-281 (281)
32 cd01529 4RHOD_Repeats Member o 99.8 1.9E-20 4.2E-25 127.9 8.8 86 34-159 11-96 (96)
33 cd00158 RHOD Rhodanese Homolog 99.8 2.5E-20 5.4E-25 124.3 8.5 88 27-158 2-89 (89)
34 cd01532 4RHOD_Repeat_1 Member 99.8 3.9E-20 8.5E-25 125.7 9.6 88 30-159 5-92 (92)
35 PRK08762 molybdopterin biosynt 99.8 4.7E-20 1E-24 154.5 11.7 104 19-167 2-105 (376)
36 cd01531 Acr2p Eukaryotic arsen 99.8 5.3E-20 1.1E-24 129.5 9.8 102 19-160 1-112 (113)
37 COG2897 SseA Rhodanese-related 99.8 5.9E-20 1.3E-24 147.8 9.0 135 3-168 125-284 (285)
38 PRK09629 bifunctional thiosulf 99.8 1E-19 2.3E-24 160.2 9.5 133 4-167 117-272 (610)
39 PRK01415 hypothetical protein; 99.8 2E-19 4.3E-24 142.3 9.9 103 19-161 111-213 (247)
40 COG0607 PspE Rhodanese-related 99.8 4.1E-19 8.9E-24 123.3 10.1 97 27-167 12-109 (110)
41 PRK05320 rhodanese superfamily 99.8 4.8E-19 1E-23 141.4 10.7 104 17-160 107-216 (257)
42 PRK00142 putative rhodanese-re 99.8 5.4E-19 1.2E-23 144.7 11.0 103 18-160 110-212 (314)
43 COG2897 SseA Rhodanese-related 99.8 4.6E-19 9.9E-24 142.6 10.3 124 18-167 9-139 (285)
44 TIGR02981 phageshock_pspE phag 99.8 7.1E-19 1.5E-23 121.8 9.0 80 35-159 18-97 (101)
45 cd01443 Cdc25_Acr2p Cdc25 enzy 99.8 9E-19 1.9E-23 123.2 9.3 99 20-158 2-112 (113)
46 PRK07878 molybdopterin biosynt 99.8 1.4E-18 3E-23 146.3 11.2 104 17-164 284-388 (392)
47 PRK10287 thiosulfate:cyanide s 99.8 2.2E-18 4.9E-23 119.9 9.1 80 35-159 20-99 (104)
48 PRK07411 hypothetical protein; 99.7 1.2E-17 2.7E-22 140.4 10.6 108 17-166 279-388 (390)
49 PRK05597 molybdopterin biosynt 99.7 1.3E-17 2.7E-22 138.8 9.6 97 18-160 259-355 (355)
50 TIGR03167 tRNA_sel_U_synt tRNA 99.7 2E-17 4.4E-22 135.2 9.1 111 35-165 2-120 (311)
51 PRK11784 tRNA 2-selenouridine 99.7 4E-17 8.7E-22 135.1 9.7 120 23-163 4-132 (345)
52 cd01446 DSP_MapKP N-terminal r 99.7 1.1E-16 2.5E-21 115.4 10.8 123 21-160 1-127 (132)
53 PRK05600 thiamine biosynthesis 99.6 5.4E-16 1.2E-20 129.6 8.8 95 20-155 271-369 (370)
54 COG1054 Predicted sulfurtransf 99.5 9.2E-15 2E-19 116.9 6.1 101 20-160 113-213 (308)
55 KOG1529 Mercaptopyruvate sulfu 99.5 4.3E-14 9.4E-19 112.5 8.6 122 20-167 5-137 (286)
56 PRK01269 tRNA s(4)U8 sulfurtra 99.4 7.6E-13 1.7E-17 114.2 8.7 81 25-152 398-482 (482)
57 KOG3772 M-phase inducer phosph 99.4 5.9E-13 1.3E-17 108.0 7.3 107 16-160 152-276 (325)
58 KOG2017 Molybdopterin synthase 99.2 2.7E-11 5.8E-16 98.9 7.1 108 19-166 316-425 (427)
59 KOG1529 Mercaptopyruvate sulfu 99.1 1.2E-10 2.5E-15 93.0 5.7 125 4-160 124-276 (286)
60 COG5105 MIH1 Mitotic inducer, 98.7 8.5E-08 1.8E-12 77.9 7.3 103 16-160 238-358 (427)
61 KOG1717 Dual specificity phosp 97.7 4.3E-05 9.3E-10 61.0 3.7 120 21-160 5-124 (343)
62 COG2603 Predicted ATPase [Gene 97.7 6.7E-05 1.4E-09 60.6 4.7 117 25-158 6-127 (334)
63 KOG1093 Predicted protein kina 96.8 0.00031 6.7E-09 61.4 0.3 104 15-159 617-720 (725)
64 PF13350 Y_phosphatase3: Tyros 96.3 0.032 6.8E-07 41.4 8.2 116 15-146 23-153 (164)
65 KOG3636 Uncharacterized conser 95.6 0.095 2E-06 45.2 8.6 45 20-64 307-355 (669)
66 TIGR01244 conserved hypothetic 95.5 0.063 1.4E-06 38.7 6.4 28 20-47 13-40 (135)
67 PF04273 DUF442: Putative phos 95.1 0.11 2.3E-06 36.4 6.4 27 20-46 13-39 (110)
68 PRK00142 putative rhodanese-re 95.0 0.0093 2E-07 49.2 0.9 50 21-72 15-64 (314)
69 TIGR03167 tRNA_sel_U_synt tRNA 90.5 0.59 1.3E-05 38.6 5.1 35 19-53 135-172 (311)
70 PF01451 LMWPc: Low molecular 83.9 1 2.3E-05 32.0 2.6 37 108-157 1-41 (138)
71 COG0062 Uncharacterized conser 82.5 6 0.00013 30.7 6.5 33 105-149 49-81 (203)
72 smart00195 DSPc Dual specifici 81.9 6.3 0.00014 27.7 6.1 31 102-145 75-107 (138)
73 cd00127 DSPc Dual specificity 81.7 6.3 0.00014 27.5 6.0 14 103-116 79-92 (139)
74 COG3453 Uncharacterized protei 77.4 13 0.00028 26.6 6.2 28 20-47 14-41 (130)
75 PF09992 DUF2233: Predicted pe 77.0 3.2 6.9E-05 30.6 3.3 48 100-156 95-142 (170)
76 PLN02727 NAD kinase 76.7 14 0.00031 35.0 7.9 27 20-46 267-293 (986)
77 TIGR00197 yjeF_nterm yjeF N-te 75.7 5 0.00011 30.9 4.2 37 102-150 42-78 (205)
78 PLN03050 pyridoxine (pyridoxam 75.6 5.3 0.00012 31.8 4.4 34 105-150 60-93 (246)
79 PF03853 YjeF_N: YjeF-related 73.9 2.3 5E-05 31.7 1.9 35 103-149 23-57 (169)
80 TIGR02689 ars_reduc_gluta arse 71.4 6.6 0.00014 27.6 3.7 36 106-154 1-36 (126)
81 PRK10126 tyrosine phosphatase; 71.3 5.2 0.00011 29.0 3.2 38 106-157 3-40 (147)
82 PRK11391 etp phosphotyrosine-p 70.0 6.2 0.00014 28.6 3.4 38 106-157 3-40 (144)
83 PLN03049 pyridoxine (pyridoxam 69.2 6.2 0.00013 34.4 3.7 33 106-150 60-92 (462)
84 PLN02918 pyridoxine (pyridoxam 69.1 5.8 0.00013 35.3 3.5 33 106-150 136-168 (544)
85 smart00226 LMWPc Low molecular 68.4 5.2 0.00011 28.4 2.6 37 108-157 1-37 (140)
86 PRK10565 putative carbohydrate 67.0 7.7 0.00017 34.2 3.9 37 102-150 57-93 (508)
87 PF04343 DUF488: Protein of un 65.4 6.4 0.00014 27.5 2.6 20 24-43 2-22 (122)
88 PRK13530 arsenate reductase; P 64.7 13 0.00029 26.4 4.2 37 105-154 3-39 (133)
89 cd00115 LMWPc Substituted upda 64.0 9.7 0.00021 27.1 3.4 38 107-157 2-40 (141)
90 PRK07688 thiamine/molybdopteri 62.5 4.9 0.00011 33.5 1.7 38 17-55 274-317 (339)
91 COG0394 Wzb Protein-tyrosine-p 62.1 13 0.00028 26.9 3.7 38 106-156 3-40 (139)
92 PF02590 SPOUT_MTase: Predicte 62.1 8.2 0.00018 28.6 2.7 47 99-157 61-110 (155)
93 PRK00103 rRNA large subunit me 59.0 15 0.00033 27.2 3.7 46 100-157 62-110 (157)
94 PF05706 CDKN3: Cyclin-depende 56.1 23 0.0005 26.7 4.2 31 100-143 128-159 (168)
95 TIGR02691 arsC_pI258_fam arsen 51.0 17 0.00038 25.7 2.8 34 108-154 1-34 (129)
96 KOG3425 Uncharacterized conser 50.6 13 0.00027 26.6 1.9 53 102-160 22-82 (128)
97 PRK11784 tRNA 2-selenouridine 50.1 43 0.00092 28.1 5.3 36 22-58 152-187 (345)
98 cd03028 GRX_PICOT_like Glutare 47.6 40 0.00087 22.0 4.0 32 104-145 6-39 (90)
99 PRK12361 hypothetical protein; 44.4 28 0.0006 30.8 3.6 16 102-117 172-187 (547)
100 TIGR00640 acid_CoA_mut_C methy 44.4 43 0.00092 23.9 4.0 49 103-161 51-105 (132)
101 COG2453 CDC14 Predicted protei 44.2 28 0.0006 26.1 3.1 16 101-116 101-116 (180)
102 cd02071 MM_CoA_mut_B12_BD meth 44.1 40 0.00087 23.4 3.8 48 104-161 49-102 (122)
103 COG2185 Sbm Methylmalonyl-CoA 43.9 36 0.00079 24.9 3.5 44 101-154 59-102 (143)
104 COG1576 Uncharacterized conser 43.6 61 0.0013 24.1 4.7 46 99-157 61-109 (155)
105 KOG0081 GTPase Rab27, small G 43.5 54 0.0012 24.8 4.4 39 3-47 68-106 (219)
106 PF01488 Shikimate_DH: Shikima 42.7 37 0.0008 24.0 3.5 36 104-154 11-46 (135)
107 cd00079 HELICc Helicase superf 41.8 65 0.0014 21.5 4.5 36 104-154 27-62 (131)
108 COG2519 GCD14 tRNA(1-methylade 40.7 40 0.00086 27.2 3.6 52 83-149 167-218 (256)
109 TIGR00246 tRNA_RlmH_YbeA rRNA 40.0 41 0.00088 24.8 3.4 43 101-157 62-107 (153)
110 KOG0333 U5 snRNP-like RNA heli 39.9 55 0.0012 29.4 4.6 37 104-155 516-552 (673)
111 PF02302 PTS_IIB: PTS system, 38.9 47 0.001 21.3 3.3 10 107-116 1-10 (90)
112 PTZ00242 protein tyrosine phos 37.8 75 0.0016 23.5 4.6 15 102-116 95-109 (166)
113 cd05567 PTS_IIB_mannitol PTS_I 37.4 52 0.0011 21.3 3.3 11 106-116 1-11 (87)
114 PF10903 DUF2691: Protein of u 36.4 86 0.0019 23.2 4.5 92 12-151 47-142 (153)
115 TIGR01587 cas3_core CRISPR-ass 35.6 52 0.0011 27.0 3.7 40 102-155 219-259 (358)
116 TIGR00614 recQ_fam ATP-depende 35.5 38 0.00083 29.3 3.0 38 103-155 224-261 (470)
117 PTZ00110 helicase; Provisional 34.8 71 0.0015 28.4 4.6 37 104-155 376-412 (545)
118 COG4822 CbiK Cobalamin biosynt 34.7 1E+02 0.0023 24.4 4.9 46 91-150 121-173 (265)
119 PTZ00393 protein tyrosine phos 34.7 43 0.00093 26.7 2.9 31 102-145 167-198 (241)
120 PRK12550 shikimate 5-dehydroge 34.6 84 0.0018 25.3 4.7 36 101-151 118-153 (272)
121 COG0034 PurF Glutamine phospho 34.5 65 0.0014 28.2 4.1 39 103-152 346-384 (470)
122 PF07879 PHB_acc_N: PHB/PHA ac 33.9 55 0.0012 20.6 2.7 30 18-47 16-46 (64)
123 PRK04837 ATP-dependent RNA hel 33.8 53 0.0012 27.8 3.6 37 104-155 254-290 (423)
124 TIGR00365 monothiol glutaredox 33.7 87 0.0019 20.8 4.0 33 103-145 9-43 (97)
125 PRK11057 ATP-dependent DNA hel 33.7 44 0.00094 30.1 3.2 38 103-155 234-271 (607)
126 PF03610 EIIA-man: PTS system 33.6 87 0.0019 21.3 4.1 17 100-116 52-68 (116)
127 KOG2882 p-Nitrophenyl phosphat 33.3 1.1E+02 0.0023 25.4 5.0 32 25-56 13-44 (306)
128 PRK11192 ATP-dependent RNA hel 32.9 62 0.0013 27.4 3.9 37 104-155 244-280 (434)
129 PF13399 LytR_C: LytR cell env 32.9 1E+02 0.0022 19.8 4.2 30 105-146 3-32 (90)
130 TIGR02190 GlrX-dom Glutaredoxi 32.2 1.3E+02 0.0028 18.8 4.7 31 102-145 4-34 (79)
131 PRK11776 ATP-dependent RNA hel 32.1 49 0.0011 28.4 3.1 37 104-155 241-277 (460)
132 PF00899 ThiF: ThiF family; I 32.0 53 0.0011 23.0 2.8 30 131-160 13-42 (135)
133 COG0514 RecQ Superfamily II DN 31.8 51 0.0011 29.8 3.2 38 103-155 228-265 (590)
134 TIGR00853 pts-lac PTS system, 31.6 72 0.0016 21.3 3.3 38 105-157 3-44 (95)
135 PF04122 CW_binding_2: Putativ 31.3 77 0.0017 20.6 3.4 25 131-156 60-84 (92)
136 PRK04537 ATP-dependent RNA hel 31.2 53 0.0011 29.4 3.3 38 103-155 255-292 (572)
137 PF03720 UDPG_MGDP_dh_C: UDP-g 30.9 64 0.0014 21.8 3.0 27 17-44 77-103 (106)
138 PF00782 DSPc: Dual specificit 30.7 72 0.0016 21.9 3.3 16 102-117 70-85 (133)
139 KOG0330 ATP-dependent RNA heli 30.5 85 0.0018 27.2 4.1 37 104-155 299-335 (476)
140 PF07755 DUF1611: Protein of u 30.3 1.2E+02 0.0027 24.9 5.0 33 127-160 125-157 (301)
141 PLN02645 phosphoglycolate phos 29.3 1E+02 0.0022 25.1 4.4 37 19-55 13-49 (311)
142 TIGR03815 CpaE_hom_Actino heli 29.2 2.3E+02 0.0049 23.0 6.5 37 105-151 93-129 (322)
143 TIGR01389 recQ ATP-dependent D 28.7 56 0.0012 29.1 3.0 36 105-155 224-259 (591)
144 KOG0572 Glutamine phosphoribos 28.6 98 0.0021 26.7 4.2 36 103-149 354-389 (474)
145 KOG2018 Predicted dinucleotide 28.2 96 0.0021 26.1 4.0 46 90-151 60-105 (430)
146 PF06110 DUF953: Eukaryotic pr 27.7 1.5E+02 0.0033 20.9 4.5 14 147-160 62-75 (119)
147 KOG0332 ATP-dependent RNA heli 27.5 66 0.0014 27.7 3.0 34 107-155 332-365 (477)
148 COG0513 SrmB Superfamily II DN 27.3 80 0.0017 27.8 3.7 35 106-155 274-308 (513)
149 KOG0352 ATP-dependent DNA heli 27.1 43 0.00094 29.4 1.9 43 108-165 258-309 (641)
150 PRK09426 methylmalonyl-CoA mut 26.8 65 0.0014 29.8 3.1 43 102-154 630-672 (714)
151 cd03029 GRX_hybridPRX5 Glutare 26.5 1.3E+02 0.0028 18.3 3.7 26 107-145 2-27 (72)
152 PRK10310 PTS system galactitol 26.3 87 0.0019 20.8 3.0 38 107-158 4-45 (94)
153 PRK05298 excinuclease ABC subu 26.2 68 0.0015 29.2 3.1 39 102-155 443-481 (652)
154 cd05563 PTS_IIB_ascorbate PTS_ 26.1 90 0.0019 19.9 3.0 10 107-116 1-10 (86)
155 PRK10590 ATP-dependent RNA hel 26.0 73 0.0016 27.4 3.2 37 104-155 244-280 (456)
156 PRK09590 celB cellobiose phosp 25.8 92 0.002 21.3 3.0 37 106-157 2-42 (104)
157 cd05566 PTS_IIB_galactitol PTS 25.7 1.1E+02 0.0023 19.7 3.2 10 107-116 2-11 (89)
158 COG5350 Predicted protein tyro 25.6 75 0.0016 23.8 2.7 18 100-117 88-105 (172)
159 KOG0685 Flavin-containing amin 25.6 99 0.0021 27.3 3.8 36 103-153 19-54 (498)
160 cd00133 PTS_IIB PTS_IIB: subun 25.3 77 0.0017 19.3 2.5 22 107-141 1-22 (84)
161 PRK08762 molybdopterin biosynt 24.7 98 0.0021 26.0 3.6 37 104-155 134-170 (376)
162 PF13580 SIS_2: SIS domain; PD 24.5 2.1E+02 0.0045 20.2 4.8 32 102-145 101-132 (138)
163 cd03027 GRX_DEP Glutaredoxin ( 24.2 1.8E+02 0.0038 17.7 4.3 26 107-145 2-27 (73)
164 PRK01297 ATP-dependent RNA hel 23.7 95 0.0021 26.8 3.5 38 104-156 334-371 (475)
165 PRK07414 cob(I)yrinic acid a,c 22.8 2E+02 0.0044 21.8 4.7 40 102-153 18-61 (178)
166 TIGR00824 EIIA-man PTS system, 22.7 1.3E+02 0.0029 20.7 3.5 38 100-152 53-91 (116)
167 PRK04923 ribose-phosphate pyro 22.7 1.2E+02 0.0026 25.1 3.7 32 104-149 216-250 (319)
168 KOG0091 GTPase Rab39, small G 22.6 28 0.00061 26.5 -0.0 41 2-48 58-98 (213)
169 PTZ00424 helicase 45; Provisio 22.6 1.2E+02 0.0026 25.2 3.7 36 105-155 267-302 (401)
170 PRK07199 phosphoribosylpyropho 22.5 1.1E+02 0.0023 25.2 3.3 33 104-150 210-245 (301)
171 TIGR01809 Shik-DH-AROM shikima 22.5 1.2E+02 0.0026 24.4 3.6 33 104-151 124-156 (282)
172 KOG0331 ATP-dependent RNA heli 22.4 1.1E+02 0.0025 27.2 3.6 38 103-155 339-376 (519)
173 TIGR02189 GlrX-like_plant Glut 22.3 2.2E+02 0.0047 18.9 4.4 29 104-145 6-34 (99)
174 TIGR00537 hemK_rel_arch HemK-r 22.1 2E+02 0.0044 20.9 4.6 48 91-153 120-167 (179)
175 KOG2585 Uncharacterized conser 22.1 1.2E+02 0.0026 26.4 3.6 32 108-150 269-300 (453)
176 PF13344 Hydrolase_6: Haloacid 22.1 1.7E+02 0.0037 19.5 3.8 29 104-145 29-57 (101)
177 PLN03137 ATP-dependent DNA hel 21.9 89 0.0019 30.7 3.1 36 105-155 680-715 (1195)
178 cd05568 PTS_IIB_bgl_like PTS_I 21.9 1.1E+02 0.0024 19.1 2.7 23 107-142 2-24 (85)
179 cd05564 PTS_IIB_chitobiose_lic 21.8 1.2E+02 0.0026 20.2 2.9 36 107-157 1-40 (96)
180 PRK03092 ribose-phosphate pyro 21.7 1.8E+02 0.0039 23.8 4.5 44 104-161 200-253 (304)
181 COG4671 Predicted glycosyl tra 21.7 1.2E+02 0.0025 26.0 3.4 42 104-154 8-51 (400)
182 TIGR03590 PseG pseudaminic aci 21.7 2E+02 0.0043 22.9 4.8 23 123-145 11-33 (279)
183 PRK14027 quinate/shikimate deh 21.6 1.4E+02 0.003 24.2 3.8 33 104-151 126-158 (283)
184 cd00006 PTS_IIA_man PTS_IIA, P 21.4 1.6E+02 0.0035 20.2 3.7 37 101-152 53-90 (122)
185 cd05565 PTS_IIB_lactose PTS_II 21.4 1.2E+02 0.0026 20.5 2.9 37 107-158 2-42 (99)
186 TIGR00631 uvrb excinuclease AB 21.1 99 0.0021 28.3 3.1 39 102-155 439-477 (655)
187 cd02066 GRX_family Glutaredoxi 21.0 1.7E+02 0.0037 16.9 3.4 26 107-145 1-26 (72)
188 PF08704 GCD14: tRNA methyltra 20.6 50 0.0011 26.4 1.0 41 103-157 137-177 (247)
189 PRK12548 shikimate 5-dehydroge 20.4 2.3E+02 0.005 22.8 4.9 21 131-151 137-157 (289)
190 PF00289 CPSase_L_chain: Carba 20.1 80 0.0017 21.7 1.9 21 131-151 13-33 (110)
No 1
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.91 E-value=4.9e-24 Score=150.89 Aligned_cols=117 Identities=36% Similarity=0.541 Sum_probs=103.8
Q ss_pred hcccceecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHH
Q 030946 16 LLQVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQ 95 (168)
Q Consensus 16 ~~~~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (168)
...+.+++.++++++++.++.++||||.++||.+||+|.+||||+..... .++...++|++
T Consensus 19 ~~~~~sv~~~qvk~L~~~~~~~llDVRepeEfk~gh~~~siNiPy~~~~~-------------------~~~l~~~eF~k 79 (136)
T KOG1530|consen 19 ASNPQSVSVEQVKNLLQHPDVVLLDVREPEEFKQGHIPASINIPYMSRPG-------------------AGALKNPEFLK 79 (136)
T ss_pred cCCcEEEEHHHHHHHhcCCCEEEEeecCHHHhhccCCcceEecccccccc-------------------ccccCCHHHHH
Confidence 46678999999999999988999999999999999999999999965432 23456789999
Q ss_pred hhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCC
Q 030946 96 TGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEV 165 (168)
Q Consensus 96 ~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~ 165 (168)
++....-+.++.|||+|.+|. |+..|...|..+||+||.++.|||.+|.+.++|..
T Consensus 80 qvg~~kp~~d~eiIf~C~SG~--------------Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~~ 135 (136)
T KOG1530|consen 80 QVGSSKPPHDKEIIFGCASGV--------------RSLKATKILVSAGYKNVGNYPGSYLAWVDKGGPKK 135 (136)
T ss_pred HhcccCCCCCCcEEEEeccCc--------------chhHHHHHHHHcCcccccccCccHHHHHHccCCCC
Confidence 976676677889999999998 99999999999999999999999999999988764
No 2
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.91 E-value=6e-24 Score=148.64 Aligned_cols=101 Identities=31% Similarity=0.389 Sum_probs=85.6
Q ss_pred cccceecHHHHHHHhhcC-CeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHH
Q 030946 17 LQVRSVEAKEALRLQKEN-NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQ 95 (168)
Q Consensus 17 ~~~~~i~~~~l~~~l~~~-~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (168)
..+..|+++++.++++++ +.+|||||++.||..||||||+|+|+..+.... .
T Consensus 7 ~~~~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgainip~~~l~~~~---------------------------~ 59 (109)
T cd01533 7 RHTPSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSVSCPGAELVLRV---------------------------G 59 (109)
T ss_pred ccCCcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCceeCCHHHHHHHH---------------------------H
Confidence 446789999999999765 578999999999999999999999997653311 1
Q ss_pred hhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccc-eeEccccHHHHHhcC
Q 030946 96 TGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKN-VYHLEGGLYKWFKEE 161 (168)
Q Consensus 96 ~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~-v~~l~GG~~~w~~~g 161 (168)
....+++++||+||.+|. ||..+++.|+..||+| |+.|.||+.+|..+|
T Consensus 60 ---~l~~~~~~~ivv~C~~G~--------------rs~~a~~~L~~~G~~~~v~~l~gG~~~W~~~g 109 (109)
T cd01533 60 ---ELAPDPRTPIVVNCAGRT--------------RSIIGAQSLINAGLPNPVAALRNGTQGWTLAG 109 (109)
T ss_pred ---hcCCCCCCeEEEECCCCc--------------hHHHHHHHHHHCCCCcceeEecCCHHHHHhcC
Confidence 122356789999999998 9999999999999988 999999999999875
No 3
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.91 E-value=9.9e-24 Score=147.32 Aligned_cols=103 Identities=30% Similarity=0.492 Sum_probs=90.9
Q ss_pred ccceecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhh
Q 030946 18 QVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTG 97 (168)
Q Consensus 18 ~~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (168)
.+..++++++.++++.++.++||+|++.||..||||||+|+|+..+.. +
T Consensus 3 ~~~~is~~el~~~l~~~~~~ivDvR~~~e~~~ghi~gA~~ip~~~l~~---------------------------~---- 51 (108)
T PRK00162 3 QFECINVEQAHQKLQEGGAVLVDIRDPQSFAMGHAPGAFHLTNDSLGA---------------------------F---- 51 (108)
T ss_pred CccccCHHHHHHHHHcCCCEEEEcCCHHHHhcCCCCCCeECCHHHHHH---------------------------H----
Confidence 577899999999997767899999999999999999999999865432 1
Q ss_pred hhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCCC
Q 030946 98 VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVS 166 (168)
Q Consensus 98 ~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~ 166 (168)
...++++++||+||.+|. ++..++..|+..||+||++|.||+.+|...++|++.
T Consensus 52 -~~~~~~~~~ivv~c~~g~--------------~s~~a~~~L~~~G~~~v~~l~GG~~~w~~~~~~~~~ 105 (108)
T PRK00162 52 -MRQADFDTPVMVMCYHGN--------------SSQGAAQYLLQQGFDVVYSIDGGFEAWRRTFPAEVA 105 (108)
T ss_pred -HHhcCCCCCEEEEeCCCC--------------CHHHHHHHHHHCCchheEEecCCHHHHHhcCCCccC
Confidence 123578899999999997 899999999999999999999999999999999875
No 4
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.91 E-value=1.3e-23 Score=144.34 Aligned_cols=98 Identities=30% Similarity=0.413 Sum_probs=86.5
Q ss_pred ceecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhh
Q 030946 20 RSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVE 99 (168)
Q Consensus 20 ~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (168)
..|+++++.++++.+ .+|||+|++.+|..+|||||+|+|+..+... .
T Consensus 2 ~~i~~~el~~~~~~~-~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~--------------------------------~ 48 (99)
T cd01527 2 TTISPNDACELLAQG-AVLVDIREPDEYLRERIPGARLVPLSQLESE--------------------------------G 48 (99)
T ss_pred CccCHHHHHHHHHCC-CEEEECCCHHHHHhCcCCCCEECChhHhccc--------------------------------c
Confidence 568999999999875 8999999999999999999999998765321 1
Q ss_pred ccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCC
Q 030946 100 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPE 164 (168)
Q Consensus 100 ~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~ 164 (168)
..++++++||+||++|. ++..++..|.+.||.++++|.||+.+|..+|+|+
T Consensus 49 ~~~~~~~~iv~~c~~g~--------------~s~~~~~~L~~~g~~~v~~l~gG~~~W~~~~~~~ 99 (99)
T cd01527 49 LPLVGANAIIFHCRSGM--------------RTQQNAERLAAISAGEAYVLEGGLDAWKAAGLPV 99 (99)
T ss_pred cCCCCCCcEEEEeCCCc--------------hHHHHHHHHHHcCCccEEEeeCCHHHHHHCcCCC
Confidence 23578899999999997 9999999999999999999999999999999875
No 5
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.90 E-value=5.4e-24 Score=146.87 Aligned_cols=99 Identities=30% Similarity=0.454 Sum_probs=82.3
Q ss_pred eecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhc
Q 030946 21 SVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVES 100 (168)
Q Consensus 21 ~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (168)
.|+++++.++++.++.+|||||++.||..||||||+|+|+..+.... ..+.. ..
T Consensus 3 ~is~~~l~~~~~~~~~~iiDvR~~~e~~~ghi~gA~~ip~~~~~~~~------------------------~~~~~--~~ 56 (101)
T cd01518 3 YLSPAEWNELLEDPEVVLLDVRNDYEYDIGHFKGAVNPDVDTFREFP------------------------FWLDE--NL 56 (101)
T ss_pred cCCHHHHHHHHcCCCEEEEEcCChhhhhcCEeccccCCCcccHhHhH------------------------HHHHh--hh
Confidence 58899999999877899999999999999999999999997653210 00110 11
Q ss_pred cCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHh
Q 030946 101 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK 159 (168)
Q Consensus 101 ~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~ 159 (168)
..+++++||+||.+|. ||..++..|...||++|++|.||+.+|.+
T Consensus 57 ~~~~~~~ivvyC~~G~--------------rs~~a~~~L~~~G~~~v~~l~GG~~~W~~ 101 (101)
T cd01518 57 DLLKGKKVLMYCTGGI--------------RCEKASAYLKERGFKNVYQLKGGILKYLE 101 (101)
T ss_pred hhcCCCEEEEECCCch--------------hHHHHHHHHHHhCCcceeeechhHHHHhC
Confidence 2478899999999997 99999999999999999999999999974
No 6
>PLN02160 thiosulfate sulfurtransferase
Probab=99.90 E-value=1.8e-23 Score=152.18 Aligned_cols=117 Identities=36% Similarity=0.549 Sum_probs=92.9
Q ss_pred cccceecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCc--EEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHH
Q 030946 17 LQVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGA--INVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFL 94 (168)
Q Consensus 17 ~~~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgA--i~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (168)
..+..++++++.++++. +.+|||||++.||..|||||| +|+|+..+... +....+++.
T Consensus 12 ~~~~~i~~~e~~~~~~~-~~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~~~-------------------~~l~~~~~~ 71 (136)
T PLN02160 12 EEVVSVDVSQAKTLLQS-GHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQ-------------------GRVKNQEFL 71 (136)
T ss_pred eeeeEeCHHHHHHHHhC-CCEEEECCCHHHHhcCCCCCcceecccchhcCcc-------------------cccCCHHHH
Confidence 35789999999999976 468999999999999999999 88887432100 000112332
Q ss_pred HhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCCCCC
Q 030946 95 QTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE 168 (168)
Q Consensus 95 ~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~~~ 168 (168)
.. ....++++++||+||.+|. ||..++..|.+.||++|+.|.||+.+|.++|+|+.+++
T Consensus 72 ~~-~~~~~~~~~~IivyC~sG~--------------RS~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~ 130 (136)
T PLN02160 72 EQ-VSSLLNPADDILVGCQSGA--------------RSLKATTELVAAGYKKVRNKGGGYLAWVDHSFPINQEE 130 (136)
T ss_pred HH-HHhccCCCCcEEEECCCcH--------------HHHHHHHHHHHcCCCCeeecCCcHHHHhhCCCCccccc
Confidence 22 1123578899999999998 99999999999999999999999999999999998764
No 7
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.88 E-value=1.8e-22 Score=139.92 Aligned_cols=103 Identities=32% Similarity=0.415 Sum_probs=82.2
Q ss_pred cHHHHHHHhh-cCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhcc
Q 030946 23 EAKEALRLQK-ENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQ 101 (168)
Q Consensus 23 ~~~~l~~~l~-~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (168)
+++++.++++ .++.+|||+|++.+|..||||||+|+|+..+.... .....+|.+......
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~~-------------------~~~~~~~~~~~~~~~ 62 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGAINIPLSSLPDAL-------------------ALSEEEFEKKYGFPK 62 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCcEEechHHhhhhh-------------------CCCHHHHHHHhcccC
Confidence 6788999887 66799999999999999999999999998753210 001112222212245
Q ss_pred CCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHH
Q 030946 102 LDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF 158 (168)
Q Consensus 102 ~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~ 158 (168)
++++++||+||.+|. +|..+++.|...||+||++|+||+.+|.
T Consensus 63 ~~~~~~ivv~c~~g~--------------~s~~~~~~l~~~G~~~v~~~~Gg~~~W~ 105 (106)
T cd01519 63 PSKDKELIFYCKAGV--------------RSKAAAELARSLGYENVGNYPGSWLDWA 105 (106)
T ss_pred CCCCCeEEEECCCcH--------------HHHHHHHHHHHcCCccceecCCcHHHHc
Confidence 677899999999987 9999999999999999999999999996
No 8
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.88 E-value=1.4e-22 Score=144.13 Aligned_cols=114 Identities=26% Similarity=0.312 Sum_probs=90.3
Q ss_pred ecHHHHHHHhhcCCeEEEecCCh-------hhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHH
Q 030946 22 VEAKEALRLQKENNFVILDVRPE-------AEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFL 94 (168)
Q Consensus 22 i~~~~l~~~l~~~~~~liDvR~~-------~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (168)
|+++++.+++++++.+|||+|++ .+|..||||||+|+|+..+..... ...+.+...+++.+++
T Consensus 2 i~~~~l~~~l~~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 71 (122)
T cd01448 2 VSPDWLAEHLDDPDVRILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLDDKS----------PGPHMLPSPEEFAELL 71 (122)
T ss_pred cCHHHHHHHhCCCCeEEEEeecCCCCCchhhHHhhCCCCCCEEcChhhccccCC----------CCCCCCCCHHHHHHHH
Confidence 78999999998777899999999 999999999999999987653210 0122233333444444
Q ss_pred HhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcC
Q 030946 95 QTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEE 161 (168)
Q Consensus 95 ~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g 161 (168)
.. .+++++++||+||++|+ .++..+++.|+..||++|++|+||+.+|..+|
T Consensus 72 ~~---~~~~~~~~vv~~c~~g~-------------~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g 122 (122)
T cd01448 72 GS---LGISNDDTVVVYDDGGG-------------FFAARAWWTLRYFGHENVRVLDGGLQAWKAEG 122 (122)
T ss_pred HH---cCCCCCCEEEEECCCCC-------------ccHHHHHHHHHHcCCCCEEEecCCHHHHHhCc
Confidence 33 56889999999999953 28999999999999999999999999998875
No 9
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.88 E-value=4.5e-22 Score=139.48 Aligned_cols=103 Identities=27% Similarity=0.442 Sum_probs=86.8
Q ss_pred ccceecHHHHHHHhhcC--CeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHH
Q 030946 18 QVRSVEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQ 95 (168)
Q Consensus 18 ~~~~i~~~~l~~~l~~~--~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (168)
.-..++++++.++++.+ +.+|||+|++.+|..||||||+|+|...+...
T Consensus 6 ~~~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~l~~~----------------------------- 56 (110)
T cd01521 6 LAFETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGAINLPHREICEN----------------------------- 56 (110)
T ss_pred eeeecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCCEeCCHHHhhhH-----------------------------
Confidence 34578999999999763 58999999999999999999999998764311
Q ss_pred hhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCC
Q 030946 96 TGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPE 164 (168)
Q Consensus 96 ~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~ 164 (168)
....++++++||+||++|.+ .++..+++.|+..||+ +++|+||+.+|..+|+|+
T Consensus 57 --~~~~i~~~~~vvvyc~~g~~------------~~s~~~a~~l~~~G~~-v~~l~GG~~~W~~~g~~~ 110 (110)
T cd01521 57 --ATAKLDKEKLFVVYCDGPGC------------NGATKAALKLAELGFP-VKEMIGGLDWWKREGYAT 110 (110)
T ss_pred --hhhcCCCCCeEEEEECCCCC------------chHHHHHHHHHHcCCe-EEEecCCHHHHHHCCCCC
Confidence 12356889999999998742 2789999999999995 999999999999999885
No 10
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.88 E-value=1.6e-22 Score=139.23 Aligned_cols=98 Identities=27% Similarity=0.439 Sum_probs=80.8
Q ss_pred ecHHHHHHHhhcC-CeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhc
Q 030946 22 VEAKEALRLQKEN-NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVES 100 (168)
Q Consensus 22 i~~~~l~~~l~~~-~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (168)
|+++++.++++++ +.+|||||++.||..||||||+|+|+..+...+... ..+ ...
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~~~~~-------------------~~~-----~~~ 56 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGENNTPYFDPYFDFLEI-------------------EED-----ILD 56 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCcccccccchHHHHHh-------------------hHH-----HHh
Confidence 5789999999764 689999999999999999999999998764432000 000 123
Q ss_pred cCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHH
Q 030946 101 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF 158 (168)
Q Consensus 101 ~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~ 158 (168)
.++++++||+||.+|. ||..++..|...||+ ++.|.||+.+|.
T Consensus 57 ~~~~~~~ivv~C~~G~--------------rs~~aa~~L~~~G~~-~~~l~GG~~~W~ 99 (100)
T cd01523 57 QLPDDQEVTVICAKEG--------------SSQFVAELLAERGYD-VDYLAGGMKAWS 99 (100)
T ss_pred hCCCCCeEEEEcCCCC--------------cHHHHHHHHHHcCce-eEEeCCcHHhhc
Confidence 4678899999999998 999999999999998 999999999996
No 11
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.88 E-value=2.9e-22 Score=136.83 Aligned_cols=93 Identities=30% Similarity=0.389 Sum_probs=77.2
Q ss_pred ecHHHHHHHhhcC--CeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhh
Q 030946 22 VEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVE 99 (168)
Q Consensus 22 i~~~~l~~~l~~~--~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (168)
|+++++.++++++ +.++||||++.||..||||||+|+|+..+..... .
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga~~ip~~~l~~~~~-----------------------~------- 50 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGFRHTPGGQLVQETD-----------------------H------- 50 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCcEeCCHHHHHHHHH-----------------------H-------
Confidence 6889999999764 5789999999999999999999999876543110 0
Q ss_pred ccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHh
Q 030946 100 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK 159 (168)
Q Consensus 100 ~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~ 159 (168)
....++++||+||.+|. |+..++..|...||+ |++|+||+.+|..
T Consensus 51 ~~~~~~~~iv~~c~~G~--------------rs~~aa~~L~~~G~~-v~~l~GG~~~W~~ 95 (95)
T cd01534 51 FAPVRGARIVLADDDGV--------------RADMTASWLAQMGWE-VYVLEGGLAAALA 95 (95)
T ss_pred hcccCCCeEEEECCCCC--------------hHHHHHHHHHHcCCE-EEEecCcHHHhcC
Confidence 01124688999999998 999999999999998 9999999999963
No 12
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.88 E-value=6.5e-22 Score=142.35 Aligned_cols=121 Identities=31% Similarity=0.395 Sum_probs=83.3
Q ss_pred ecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHh----hhhhccccCCCCCchHHHHhh
Q 030946 22 VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRA----AFAFFGIFSGTEENPEFLQTG 97 (168)
Q Consensus 22 i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 97 (168)
|+++++.++++ ++.+|||||++.||..||||||+|+|+..+..+.......... ....... ....++++++...
T Consensus 1 ~s~~el~~~l~-~~~~iiDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 78 (128)
T cd01520 1 ITAEDLLALRK-ADGPLIDVRSPKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREAAIELGLE-LVSGKLKRILNEA 78 (128)
T ss_pred CCHHHHHHHHh-cCCEEEECCCHHHhccCcCCCcEEccCCChhHHHHhhhheeccCHHHHHHHHHH-HHhhhHHHHHHHH
Confidence 68999999998 4789999999999999999999999996543221000000000 0000000 0001233444331
Q ss_pred hhccCCCCCeEEEEeCC-CCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHh
Q 030946 98 VESQLDKDAKIIVACAT-GGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK 159 (168)
Q Consensus 98 ~~~~~~~~~~iV~yc~~-g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~ 159 (168)
...+++++++||+||+. |. ||.++++.|+.+|| +|++|+||+.+|++
T Consensus 79 ~~~~i~~~~~vvvyC~~~G~--------------rs~~a~~~L~~~G~-~v~~L~GG~~aw~~ 126 (128)
T cd01520 79 WEARLERDPKLLIYCARGGM--------------RSQSLAWLLESLGI-DVPLLEGGYKAYRK 126 (128)
T ss_pred HHhccCCCCeEEEEeCCCCc--------------cHHHHHHHHHHcCC-ceeEeCCcHHHHHh
Confidence 22478899999999974 55 99999999999999 59999999999974
No 13
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.88 E-value=5.2e-22 Score=141.64 Aligned_cols=114 Identities=27% Similarity=0.395 Sum_probs=90.9
Q ss_pred cccceecHHHHHHHhhc-CCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHH
Q 030946 17 LQVRSVEAKEALRLQKE-NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQ 95 (168)
Q Consensus 17 ~~~~~i~~~~l~~~l~~-~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (168)
.....|+++++.+++++ .+.+|||+|++.||..+|||||+|+|+..+...... ++..
T Consensus 5 ~~~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpgai~ip~~~~~~~~~~--------------------~~~~-- 62 (122)
T cd01526 5 SPEERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEAINIPLSELLSKAAE--------------------LKSL-- 62 (122)
T ss_pred CcccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCCeEccHHHHhhhhhh--------------------hhhh--
Confidence 34668999999999976 478999999999999999999999999876432110 0000
Q ss_pred hhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCc-cceeEccccHHHHHhcCCCCCC
Q 030946 96 TGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGY-KNVYHLEGGLYKWFKEELPEVS 166 (168)
Q Consensus 96 ~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~-~~v~~l~GG~~~w~~~g~p~~~ 166 (168)
......++++++||+||++|. ||..++..|+..|| ++|+.|+||+.+|..+..+.-+
T Consensus 63 ~~~~~~~~~~~~ivv~C~~G~--------------rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~~~~ 120 (122)
T cd01526 63 QELPLDNDKDSPIYVVCRRGN--------------DSQTAVRKLKELGLERFVRDIIGGLKAWADKVDPTFP 120 (122)
T ss_pred hhcccccCCCCcEEEECCCCC--------------cHHHHHHHHHHcCCccceeeecchHHHHHHHhCccCC
Confidence 001234578899999999997 99999999999999 7999999999999988766543
No 14
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.87 E-value=5.5e-22 Score=148.35 Aligned_cols=117 Identities=23% Similarity=0.277 Sum_probs=87.1
Q ss_pred hcccceecHHHHHHHhhcCCeEEEecCChh----hhhhc---------CCCCcEEechhhHHhhhhHHHHHHHhhhhhcc
Q 030946 16 LLQVRSVEAKEALRLQKENNFVILDVRPEA----EFKEA---------HPPGAINVQIYRLIKEWTAWDIARRAAFAFFG 82 (168)
Q Consensus 16 ~~~~~~i~~~~l~~~l~~~~~~liDvR~~~----e~~~g---------hIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~ 82 (168)
......|+++++.+++++++.+|||||+.. +|..| |||||+|+|+..... .
T Consensus 32 ~~~~~~vs~~el~~~l~~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv~ip~~~~~~-l--------------- 95 (162)
T TIGR03865 32 LKGARVLDTEAAQALLARGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSLWLPNTGYGN-L--------------- 95 (162)
T ss_pred cCCccccCHHHHHHHHhCCCcEEEECCCCccccccccccceeccccCCCCCCcEEecccCCCC-C---------------
Confidence 455678999999999988789999999865 45444 999999999632110 0
Q ss_pred ccCCCCCchHHHHhhhhc-cCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcC
Q 030946 83 IFSGTEENPEFLQTGVES-QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEE 161 (168)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~-~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g 161 (168)
.. ...+.+.+..... ...++++||+||.+|. .+|..+++.|+.+||+||++|+||+.+|+++|
T Consensus 96 --~~-~~~~~~~~~l~~~~~~~~d~~IVvYC~~G~-------------~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG 159 (162)
T TIGR03865 96 --AP-AWQAYFRRGLERATGGDKDRPLVFYCLADC-------------WMSWNAAKRALAYGYSNVYWYPDGTDGWQAAG 159 (162)
T ss_pred --CC-chhHHHHHHHHHhcCCCCCCEEEEEECCCC-------------HHHHHHHHHHHhcCCcceEEecCCHHHHHHcC
Confidence 00 0001122211112 2368999999999875 38999999999999999999999999999999
Q ss_pred CCC
Q 030946 162 LPE 164 (168)
Q Consensus 162 ~p~ 164 (168)
+|+
T Consensus 160 ~Pv 162 (162)
T TIGR03865 160 LPL 162 (162)
T ss_pred CCC
Confidence 986
No 15
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.87 E-value=5.1e-22 Score=136.73 Aligned_cols=102 Identities=26% Similarity=0.450 Sum_probs=81.4
Q ss_pred ecHHHHHHHhhcCCeEEEecCChhhh-hhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhc
Q 030946 22 VEAKEALRLQKENNFVILDVRPEAEF-KEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVES 100 (168)
Q Consensus 22 i~~~~l~~~l~~~~~~liDvR~~~e~-~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (168)
|+++++.+++++++.+|||+|++.+| ..||||||+|+|+..+.. +... ...+ ...
T Consensus 1 is~~el~~~~~~~~~~iiDvR~~~~~~~~ghIpga~~ip~~~~~~-~~~~-------------------~~~~----~~~ 56 (103)
T cd01447 1 LSPEDARALLGSPGVLLVDVRDPRELERTGMIPGAFHAPRGMLEF-WADP-------------------DSPY----HKP 56 (103)
T ss_pred CCHHHHHHHHhCCCeEEEECCCHHHHHhcCCCCCcEEcccchhhh-hcCc-------------------cccc----ccc
Confidence 57899999988768999999999998 579999999999865421 1000 0000 112
Q ss_pred cCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcC
Q 030946 101 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEE 161 (168)
Q Consensus 101 ~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g 161 (168)
.++++++||+||++|. ++..+++.|...||++|++|+||+.+|..+|
T Consensus 57 ~~~~~~~ivv~c~~g~--------------~s~~~~~~l~~~G~~~v~~l~Gg~~~w~~~g 103 (103)
T cd01447 57 AFAEDKPFVFYCASGW--------------RSALAGKTLQDMGLKPVYNIEGGFKDWKEAG 103 (103)
T ss_pred CCCCCCeEEEEcCCCC--------------cHHHHHHHHHHcChHHhEeecCcHHHHhhcC
Confidence 4678899999999987 8999999999999999999999999998765
No 16
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.87 E-value=6.8e-22 Score=134.56 Aligned_cols=92 Identities=32% Similarity=0.467 Sum_probs=80.4
Q ss_pred eecHHHHHHHhhc-CCeEEEecCChhhhhh--cCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhh
Q 030946 21 SVEAKEALRLQKE-NNFVILDVRPEAEFKE--AHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTG 97 (168)
Q Consensus 21 ~i~~~~l~~~l~~-~~~~liDvR~~~e~~~--ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (168)
.|+++++.++++. .+.+|||+|++.+|.. ||||||+|+|+..+..
T Consensus 1 ~i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga~~ip~~~~~~-------------------------------- 48 (96)
T cd01444 1 RISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGAIHLDEDSLDD-------------------------------- 48 (96)
T ss_pred CcCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCCeeCCHHHHHH--------------------------------
Confidence 3788999998876 4689999999999999 9999999999976532
Q ss_pred hhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHH
Q 030946 98 VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF 158 (168)
Q Consensus 98 ~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~ 158 (168)
....++++++||+||.+|. +|..+++.|+..||++|++|.||+.+|.
T Consensus 49 ~~~~~~~~~~ivv~c~~g~--------------~s~~a~~~l~~~G~~~v~~l~gG~~~w~ 95 (96)
T cd01444 49 WLGDLDRDRPVVVYCYHGN--------------SSAQLAQALREAGFTDVRSLAGGFEAWR 95 (96)
T ss_pred HHhhcCCCCCEEEEeCCCC--------------hHHHHHHHHHHcCCceEEEcCCCHHHhc
Confidence 1123678899999999887 9999999999999999999999999996
No 17
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.87 E-value=9.4e-22 Score=133.01 Aligned_cols=89 Identities=37% Similarity=0.576 Sum_probs=77.1
Q ss_pred ecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhcc
Q 030946 22 VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQ 101 (168)
Q Consensus 22 i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (168)
++++++.++++ ++.++||+|++.+|..||||||+|+|+..+... ...
T Consensus 1 ~~~~e~~~~~~-~~~~iiD~R~~~~~~~~hipgA~~ip~~~~~~~--------------------------------~~~ 47 (90)
T cd01524 1 VQWHELDNYRA-DGVTLIDVRTPQEFEKGHIKGAINIPLDELRDR--------------------------------LNE 47 (90)
T ss_pred CCHHHHHHHhc-CCCEEEECCCHHHHhcCCCCCCEeCCHHHHHHH--------------------------------HHh
Confidence 57899999984 478999999999999999999999998765321 123
Q ss_pred CCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHH
Q 030946 102 LDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF 158 (168)
Q Consensus 102 ~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~ 158 (168)
++++++||+||++|. ++..++..|+..|| ++++|+||+.+|+
T Consensus 48 ~~~~~~vvl~c~~g~--------------~a~~~a~~L~~~G~-~v~~l~GG~~~w~ 89 (90)
T cd01524 48 LPKDKEIIVYCAVGL--------------RGYIAARILTQNGF-KVKNLDGGYKTYS 89 (90)
T ss_pred cCCCCcEEEEcCCCh--------------hHHHHHHHHHHCCC-CEEEecCCHHHhc
Confidence 577889999999987 89999999999999 8999999999996
No 18
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.87 E-value=1.2e-21 Score=135.19 Aligned_cols=96 Identities=29% Similarity=0.532 Sum_probs=80.4
Q ss_pred ecHHHHHHHhhcC--CeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhh
Q 030946 22 VEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVE 99 (168)
Q Consensus 22 i~~~~l~~~l~~~--~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (168)
|+++++.++++.+ +.++||+|++.||..+|||||+|+|+..+... ++. .
T Consensus 2 i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga~~ip~~~~~~~---------------------------~~~--~ 52 (101)
T cd01528 2 ISVAELAEWLADEREEPVLIDVREPEELEIAFLPGFLHLPMSEIPER---------------------------SKE--L 52 (101)
T ss_pred CCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCCEecCHHHHHHH---------------------------HHH--h
Confidence 7899999999864 58999999999999999999999998765321 111 0
Q ss_pred ccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhc
Q 030946 100 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE 160 (168)
Q Consensus 100 ~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~ 160 (168)
...+++++||+||++|. ||..++..|.+.||++|++|+||+.+|...
T Consensus 53 ~~~~~~~~vv~~c~~g~--------------rs~~~~~~l~~~G~~~v~~l~GG~~~w~~~ 99 (101)
T cd01528 53 DSDNPDKDIVVLCHHGG--------------RSMQVAQWLLRQGFENVYNLQGGIDAWSLE 99 (101)
T ss_pred cccCCCCeEEEEeCCCc--------------hHHHHHHHHHHcCCccEEEecCCHHHHhhh
Confidence 11256889999999987 999999999999999999999999999753
No 19
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.87 E-value=1.1e-21 Score=135.92 Aligned_cols=102 Identities=20% Similarity=0.307 Sum_probs=78.7
Q ss_pred ecHHHHHHHhhcC--CeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhh
Q 030946 22 VEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVE 99 (168)
Q Consensus 22 i~~~~l~~~l~~~--~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (168)
|+++++.++++++ +.+|||||++.||..||||||+|+|+..++...... ..... ...+.
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~--------------~~~~~-~~~~~---- 61 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGSINIPFSSVFLKEGEL--------------EQLPT-VPRLE---- 61 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCCEeCCHHHhccccccc--------------ccccc-hHHHH----
Confidence 6899999999763 689999999999999999999999997654210000 00000 01111
Q ss_pred ccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHH
Q 030946 100 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF 158 (168)
Q Consensus 100 ~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~ 158 (168)
..++++||+||.+|. +|..+++.|+..||++|++|.||+.+|+
T Consensus 62 --~~~~~~vv~~c~~g~--------------~s~~~a~~L~~~G~~~v~~l~GG~~a~~ 104 (105)
T cd01525 62 --NYKGKIIVIVSHSHK--------------HAALFAAFLVKCGVPRVCILDGGINALK 104 (105)
T ss_pred --hhcCCeEEEEeCCCc--------------cHHHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence 124789999999997 8999999999999999999999999996
No 20
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.86 E-value=5.6e-22 Score=140.01 Aligned_cols=107 Identities=30% Similarity=0.487 Sum_probs=83.4
Q ss_pred ecHHHHHHHhhcCCeEEEecCChhhhhh-----------cCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCc
Q 030946 22 VEAKEALRLQKENNFVILDVRPEAEFKE-----------AHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN 90 (168)
Q Consensus 22 i~~~~l~~~l~~~~~~liDvR~~~e~~~-----------ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (168)
++++++.+++++++.+|||+|++.||.. ||||||+|+|+..+.... +.+...+++
T Consensus 1 ~s~~~l~~~l~~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~~--------------~~~~~~~~~ 66 (118)
T cd01449 1 VTAEEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDED--------------GTFKSPEEL 66 (118)
T ss_pred CCHHHHHHhcCCCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCCC--------------CCcCCHHHH
Confidence 5789999998766799999999999987 999999999997654311 111111111
Q ss_pred hHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHh
Q 030946 91 PEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK 159 (168)
Q Consensus 91 ~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~ 159 (168)
.+++ ...+++++++||+||++|. +|.++++.|+.+||+++++|+||+.+|..
T Consensus 67 ~~~~---~~~~~~~~~~iv~yc~~g~--------------~s~~~~~~l~~~G~~~v~~l~GG~~~W~~ 118 (118)
T cd01449 67 RALF---AALGITPDKPVIVYCGSGV--------------TACVLLLALELLGYKNVRLYDGSWSEWGS 118 (118)
T ss_pred HHHH---HHcCCCCCCCEEEECCcHH--------------HHHHHHHHHHHcCCCCeeeeCChHHHhcC
Confidence 2222 2245778999999999986 99999999999999999999999999963
No 21
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.86 E-value=1.4e-21 Score=135.81 Aligned_cols=108 Identities=32% Similarity=0.559 Sum_probs=80.1
Q ss_pred cHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhccC
Q 030946 23 EAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQL 102 (168)
Q Consensus 23 ~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (168)
||+|+.++++.++.+|||+|++.+|..||||||+|+|+..+........ ...+.+.+.. ....+
T Consensus 1 s~~el~~~l~~~~~~liD~R~~~~~~~~hI~ga~~i~~~~~~~~~~~~~---------------~~~~~~~~~~-~~~~~ 64 (113)
T PF00581_consen 1 SPEELKEMLENESVLLIDVRSPEEYERGHIPGAVNIPFPSLDPDEPSLS---------------EDKLDEFLKE-LGKKI 64 (113)
T ss_dssp -HHHHHHHHTTTTEEEEEESSHHHHHHSBETTEEEEEGGGGSSSSSBCH---------------HHHHHHHHHH-HTHGS
T ss_pred CHHHHHhhhhCCCeEEEEeCCHHHHHcCCCCCCcccccccccccccccc---------------cccccccccc-ccccc
Confidence 6899999996669999999999999999999999999966410000000 0001122222 33456
Q ss_pred CCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHH-----HHHcCccceeEccccHHHHHhc
Q 030946 103 DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYL-----LVLNGYKNVYHLEGGLYKWFKE 160 (168)
Q Consensus 103 ~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~-----L~~~G~~~v~~l~GG~~~w~~~ 160 (168)
+++++||+||..+. ++..++.. |..+||++|++|+|||.+|.++
T Consensus 65 ~~~~~iv~yc~~~~--------------~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~~ 113 (113)
T PF00581_consen 65 DKDKDIVFYCSSGW--------------RSGSAAAARVAWILKKLGFKNVYILDGGFEAWKAE 113 (113)
T ss_dssp TTTSEEEEEESSSC--------------HHHHHHHHHHHHHHHHTTTSSEEEETTHHHHHHHH
T ss_pred cccccceeeeeccc--------------ccchhHHHHHHHHHHHcCCCCEEEecChHHHHhcC
Confidence 88899999998776 77776666 8999999999999999999864
No 22
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.86 E-value=4.5e-21 Score=129.75 Aligned_cols=98 Identities=38% Similarity=0.627 Sum_probs=78.0
Q ss_pred CCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhccCCCCCeEEEEeC
Q 030946 34 NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACA 113 (168)
Q Consensus 34 ~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iV~yc~ 113 (168)
++.+|||+|++.||..+|||||+|+|+..+....... ....+..........++++||+||.
T Consensus 3 ~~~~ivDvR~~~e~~~~hi~ga~~i~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~iv~~c~ 64 (100)
T smart00450 3 EKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGEL------------------DILEFEELLKRLGLDKDKPVVVYCR 64 (100)
T ss_pred CCEEEEECCCHHHhccCCCCCceeCCHHHhccCCCCc------------------CHHHHHHHHHHcCCCCCCeEEEEeC
Confidence 4789999999999999999999999998765321110 0001222223356788999999998
Q ss_pred CCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCC
Q 030946 114 TGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELP 163 (168)
Q Consensus 114 ~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p 163 (168)
+|. ++..+++.|+..||++|++|.||+.+|.+++.|
T Consensus 65 ~g~--------------~a~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~~ 100 (100)
T smart00450 65 SGN--------------RSAKAAWLLRELGFKNVYLLDGGYKEWSAAGPP 100 (100)
T ss_pred CCc--------------HHHHHHHHHHHcCCCceEEecCCHHHHHhcCCC
Confidence 876 999999999999999999999999999998865
No 23
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.86 E-value=2.3e-21 Score=159.23 Aligned_cols=123 Identities=18% Similarity=0.219 Sum_probs=96.8
Q ss_pred cceecHHHHHHHhhcCCeEEEecC--------C-hhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCC
Q 030946 19 VRSVEAKEALRLQKENNFVILDVR--------P-EAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEE 89 (168)
Q Consensus 19 ~~~i~~~~l~~~l~~~~~~liDvR--------~-~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (168)
...|++++|.+.+++++.+|||+| . ..+|..||||||+|+++..+.... ....++++..+.
T Consensus 21 ~~lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~----------~~~~~~lp~~~~ 90 (320)
T PLN02723 21 EPVVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRT----------TDLPHMLPSEEA 90 (320)
T ss_pred CceecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCC----------CCcCCCCCCHHH
Confidence 457999999999987789999996 3 478999999999999987653311 011223333344
Q ss_pred chHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCCCC
Q 030946 90 NPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE 167 (168)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~~ 167 (168)
+.+++. ..++.++++||+||..|. ..+.++++.|+.+||++|++|+||+.+|.++|+|++++
T Consensus 91 ~~~~l~---~~Gi~~~~~VVvY~~~g~-------------~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~~ 152 (320)
T PLN02723 91 FAAAVS---ALGIENKDGVVVYDGKGI-------------FSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVESS 152 (320)
T ss_pred HHHHHH---HcCCCCCCEEEEEcCCCc-------------chHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCcccC
Confidence 444444 478889999999998886 26778999999999999999999999999999999764
No 24
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.86 E-value=3.7e-21 Score=137.32 Aligned_cols=99 Identities=24% Similarity=0.372 Sum_probs=79.9
Q ss_pred ceecHHHHHHHhhcC------CeEEEecCChhhhhhcCCCCcEEechhh-HHhhhhHHHHHHHhhhhhccccCCCCCchH
Q 030946 20 RSVEAKEALRLQKEN------NFVILDVRPEAEFKEAHPPGAINVQIYR-LIKEWTAWDIARRAAFAFFGIFSGTEENPE 92 (168)
Q Consensus 20 ~~i~~~~l~~~l~~~------~~~liDvR~~~e~~~ghIpgAi~ip~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (168)
..|+++++.+++.++ +.+|||||++.||..||||||+|+|+.. +.....
T Consensus 2 ~~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~~ip~~~~l~~~~~------------------------ 57 (121)
T cd01530 2 KRISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAVNLSTKDELEEFFL------------------------ 57 (121)
T ss_pred CccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCEeCCcHHHHHHHHH------------------------
Confidence 468999999999753 6899999999999999999999999863 322110
Q ss_pred HHHhhhhccCCCCCeEEEEeC-CCCCCCCCCCCCCCccchHHHHHHHHHHc------------CccceeEccccHHHHH
Q 030946 93 FLQTGVESQLDKDAKIIVACA-TGGTMKPSQNLPEGQQSRSLIAAYLLVLN------------GYKNVYHLEGGLYKWF 158 (168)
Q Consensus 93 ~~~~~~~~~~~~~~~iV~yc~-~g~~~~~~~~~~~~~~~rs~~a~~~L~~~------------G~~~v~~l~GG~~~w~ 158 (168)
+......++++++||+||. +|. ||..+++.|+.. ||.+|++|.|||.+|.
T Consensus 58 --~~~~~~~~~~~~~vv~yC~~sg~--------------rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~ 120 (121)
T cd01530 58 --DKPGVASKKKRRVLIFHCEFSSK--------------RGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF 120 (121)
T ss_pred --HhhcccccCCCCEEEEECCCccc--------------cHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence 0001123678999999997 776 999999999985 9999999999999985
No 25
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.85 E-value=3.2e-21 Score=136.73 Aligned_cols=103 Identities=31% Similarity=0.458 Sum_probs=83.0
Q ss_pred ecHHHHHHHhhc-CCeEEEecCChhhhh-hcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhh
Q 030946 22 VEAKEALRLQKE-NNFVILDVRPEAEFK-EAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVE 99 (168)
Q Consensus 22 i~~~~l~~~l~~-~~~~liDvR~~~e~~-~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (168)
|+++++.+++++ ++.++||||++.||. .||||||+|+|+.++.... ....+... ..
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~~~~---------------------~~~~~~~~-l~ 58 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDME---------------------INPNFLAE-LE 58 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCceecchhhccccc---------------------cCHHHHHH-HH
Confidence 689999999987 479999999999999 9999999999997654210 01122222 11
Q ss_pred ccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhc
Q 030946 100 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE 160 (168)
Q Consensus 100 ~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~ 160 (168)
...+++++||+||.+|. +|..++..|...||+|++.|.||+.+|++.
T Consensus 59 ~~~~~~~~ivv~C~~G~--------------rs~~aa~~L~~~G~~~v~~l~gG~~~~~~~ 105 (117)
T cd01522 59 EKVGKDRPVLLLCRSGN--------------RSIAAAEAAAQAGFTNVYNVLEGFEGDLDA 105 (117)
T ss_pred hhCCCCCeEEEEcCCCc--------------cHHHHHHHHHHCCCCeEEECcCceecCCCC
Confidence 22368899999999987 999999999999999999999999999764
No 26
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.85 E-value=2.8e-21 Score=155.99 Aligned_cols=122 Identities=22% Similarity=0.250 Sum_probs=94.7
Q ss_pred ceecHHHHHHHhhcCCeEEEecCC----------hhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCC
Q 030946 20 RSVEAKEALRLQKENNFVILDVRP----------EAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEE 89 (168)
Q Consensus 20 ~~i~~~~l~~~l~~~~~~liDvR~----------~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (168)
..++++++.+.+++++.+|||+|+ +.+|..||||||+|+|+..+..... ...+.+...+.
T Consensus 5 ~lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~~~----------~~~~~~~~~~~ 74 (281)
T PRK11493 5 WFVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDHTS----------PLPHMMPRPET 74 (281)
T ss_pred cccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCCCC----------CCCCCCCCHHH
Confidence 468999999999888899999996 7889999999999999865432110 00111222223
Q ss_pred chHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCCCC
Q 030946 90 NPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE 167 (168)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~~ 167 (168)
+.+++ ...+++++++||+||.++. ..+.++++.|...||++|++|+||+.+|.++|+|++.+
T Consensus 75 ~~~~~---~~~Gi~~d~~VVvyc~~~~-------------~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~ 136 (281)
T PRK11493 75 FAVAM---RELGVNQDKHLVVYDEGNL-------------FSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEEG 136 (281)
T ss_pred HHHHH---HHcCCCCCCEEEEECCCCC-------------chHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccCC
Confidence 33343 3478899999999999876 25778899999999999999999999999999998864
No 27
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.85 E-value=7.1e-21 Score=139.93 Aligned_cols=95 Identities=26% Similarity=0.339 Sum_probs=80.2
Q ss_pred HHHHhhcC-CeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhccCCCC
Q 030946 27 ALRLQKEN-NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKD 105 (168)
Q Consensus 27 l~~~l~~~-~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (168)
+.+++.++ +.+|||||++.+|..||||||+|+|...+... ...++++
T Consensus 2 l~~~l~~~~~~~ivDvR~~~e~~~gHIpgAi~~~~~~l~~~--------------------------------l~~l~~~ 49 (145)
T cd01535 2 LAAWLGEGGQTAVVDVTASANYVKRHIPGAWWVLRAQLAQA--------------------------------LEKLPAA 49 (145)
T ss_pred hHHHHhCCCCeEEEECCCHHHHHcCCCCCceeCCHHHHHHH--------------------------------HHhcCCC
Confidence 45556443 58999999999999999999999987665331 1235677
Q ss_pred CeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCCCC
Q 030946 106 AKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE 167 (168)
Q Consensus 106 ~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~~ 167 (168)
++||+||.++. +|..+++.|+..|+++|++|.||+.+|+.+|+|++++
T Consensus 50 ~~vVv~c~~g~--------------~a~~aa~~L~~~G~~~v~~L~GG~~aW~~~g~pl~~~ 97 (145)
T cd01535 50 ERYVLTCGSSL--------------LARFAAADLAALTVKPVFVLEGGTAAWIAAGLPVESG 97 (145)
T ss_pred CCEEEEeCCCh--------------HHHHHHHHHHHcCCcCeEEecCcHHHHHHCCCCcccC
Confidence 89999999976 8999999999999999999999999999999999864
No 28
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.85 E-value=4.7e-21 Score=139.79 Aligned_cols=111 Identities=23% Similarity=0.347 Sum_probs=84.2
Q ss_pred ecHHHHHHHhh----cCCeEEEecCCh--------hhhhh------------cCCCCcEEechhhHHhhhhHHHHHHHhh
Q 030946 22 VEAKEALRLQK----ENNFVILDVRPE--------AEFKE------------AHPPGAINVQIYRLIKEWTAWDIARRAA 77 (168)
Q Consensus 22 i~~~~l~~~l~----~~~~~liDvR~~--------~e~~~------------ghIpgAi~ip~~~l~~~~~~~~~~~~~~ 77 (168)
|+++++.+.++ +++.+|||+|+. .+|.. ||||||+|+|+..+.....
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~~--------- 71 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEAG--------- 71 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcCC---------
Confidence 57899999997 457999999987 88988 9999999999875532110
Q ss_pred hhhccccCCCCCchHHHHhhhhccCCCCCeEEEEeCC--CCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHH
Q 030946 78 FAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACAT--GGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY 155 (168)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iV~yc~~--g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~ 155 (168)
...+.++..+++.+++ ...++.++++||+||++ ++ .++.++++.|+.+|++||++|+||+.
T Consensus 72 -~~~~~~p~~~~~~~~~---~~~GI~~~~~vVvY~~~~~~g-------------~~A~r~~~~l~~~G~~~v~ildGG~~ 134 (138)
T cd01445 72 -FEESMEPSEAEFAAMF---EAKGIDLDKHLIATDGDDLGG-------------FTACHIALAARLCGHPDVAILDGGFF 134 (138)
T ss_pred -CCCCCCCCHHHHHHHH---HHcCCCCCCeEEEECCCCCcc-------------hHHHHHHHHHHHcCCCCeEEeCCCHH
Confidence 0111122222333333 44789999999999986 22 28999999999999999999999999
Q ss_pred HHH
Q 030946 156 KWF 158 (168)
Q Consensus 156 ~w~ 158 (168)
+|+
T Consensus 135 ~W~ 137 (138)
T cd01445 135 EWF 137 (138)
T ss_pred Hhh
Confidence 996
No 29
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.84 E-value=6.4e-21 Score=167.80 Aligned_cols=122 Identities=20% Similarity=0.276 Sum_probs=98.7
Q ss_pred ceecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhh
Q 030946 20 RSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVE 99 (168)
Q Consensus 20 ~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (168)
..|++++|.+++++++.+|||+|++.+|..||||||+|+++....... ....+++...+++++.+.+
T Consensus 9 ~lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~~----------~~~~~~lp~~~~l~~~l~~--- 75 (610)
T PRK09629 9 LVIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRTQLGK----------PPAPGLLPDTADLEQLFGE--- 75 (610)
T ss_pred ceecHHHHHHHhcCCCEEEEECCChHHHHhCCCCCcEEcChhHhhccC----------CCCCCCCCCHHHHHHHHHH---
Confidence 469999999999888899999999999999999999999986532210 0112333333444555544
Q ss_pred ccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCCCC
Q 030946 100 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE 167 (168)
Q Consensus 100 ~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~~ 167 (168)
.++.++++||+||+++. .++.+++|.|+.+|+++|++|+||+.+|..+|+|++++
T Consensus 76 lGI~~d~~VVvYd~~g~-------------~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~~~ 130 (610)
T PRK09629 76 LGHNPDAVYVVYDDEGG-------------GWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLSTD 130 (610)
T ss_pred cCCCCCCEEEEECCCCC-------------chHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCccccC
Confidence 78899999999999875 37889999999999999999999999999999998764
No 30
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.84 E-value=5.8e-21 Score=156.85 Aligned_cols=115 Identities=20% Similarity=0.315 Sum_probs=93.4
Q ss_pred ecHHHHHHHhhcCCeEEEecCChhhh-----------hhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCc
Q 030946 22 VEAKEALRLQKENNFVILDVRPEAEF-----------KEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN 90 (168)
Q Consensus 22 i~~~~l~~~l~~~~~~liDvR~~~e~-----------~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (168)
++.+++.+.+..++.+|||+|++.|| ..||||||+|+|+..+.... +.|.+.+++
T Consensus 192 ~~~~~v~~~~~~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~~~~~--------------~~~~~~~el 257 (320)
T PLN02723 192 WTLEQVKKNIEDKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQMLDSS--------------QTLLPAEEL 257 (320)
T ss_pred ecHHHHHHhhcCCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHhcCCC--------------CCCCCHHHH
Confidence 68889998887767899999999988 46999999999997764321 223333444
Q ss_pred hHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhc-CCCCCCC
Q 030946 91 PEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE-ELPEVSE 167 (168)
Q Consensus 91 ~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~-g~p~~~~ 167 (168)
.+.+.. .+++++++||+||++|. ||+.++..|+.+||++|++|+||+.+|... .+|++.+
T Consensus 258 ~~~~~~---~gi~~~~~iv~yC~sG~--------------~A~~~~~~L~~~G~~~v~~YdGs~~eW~~~~~~Pv~~~ 318 (320)
T PLN02723 258 KKRFEQ---EGISLDSPIVASCGTGV--------------TACILALGLHRLGKTDVPVYDGSWTEWGALPDTPVATS 318 (320)
T ss_pred HHHHHh---cCCCCCCCEEEECCcHH--------------HHHHHHHHHHHcCCCCeeEeCCCHHHHhcCCCCCccCC
Confidence 444433 67889999999999997 999999999999999999999999999875 6888765
No 31
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.83 E-value=7.3e-21 Score=153.59 Aligned_cols=133 Identities=26% Similarity=0.383 Sum_probs=99.2
Q ss_pred hhhhHhhhhhhhhcc--------------cceecHHHHHHHhhcCCeEEEecCChhhhh-----------hcCCCCcEEe
Q 030946 4 LSLWIKSVEVFYLLQ--------------VRSVEAKEALRLQKENNFVILDVRPEAEFK-----------EAHPPGAINV 58 (168)
Q Consensus 4 ~~~~~~~~~~~~~~~--------------~~~i~~~~l~~~l~~~~~~liDvR~~~e~~-----------~ghIpgAi~i 58 (168)
+..|..++.++.... -..++.+++...++.++.+|||+|++.||. .||||||+|+
T Consensus 123 ~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~~i 202 (281)
T PRK11493 123 LAGWQRDDLLLEEGAVELPEGEFNAAFNPEAVVRLTDVLLASHEKTAQIVDARPAARFNAEVDEPRPGLRRGHIPGALNV 202 (281)
T ss_pred HHHHHHcCCCccCCCCCCCCCcccccCCccceecHHHHHHhhcCCCcEEEeCCCccceeeeccCCCCCcccccCCCcCCC
Confidence 567877766543321 123455666666666678999999999995 6999999999
Q ss_pred chhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHH
Q 030946 59 QIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYL 138 (168)
Q Consensus 59 p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~ 138 (168)
|+..+... +.+...+++.+++. ..+++++++||+||++|. ||..++..
T Consensus 203 ~~~~~~~~---------------~~~~~~~~l~~~~~---~~g~~~~~~ii~yC~~G~--------------~A~~~~~~ 250 (281)
T PRK11493 203 PWTELVRE---------------GELKTTDELDAIFF---GRGVSFDRPIIASCGSGV--------------TAAVVVLA 250 (281)
T ss_pred CHHHhcCC---------------CCcCCHHHHHHHHH---hcCCCCCCCEEEECCcHH--------------HHHHHHHH
Confidence 99876431 11111222233332 367888999999999997 99999999
Q ss_pred HHHcCccceeEccccHHHHHh-cCCCCCCCC
Q 030946 139 LVLNGYKNVYHLEGGLYKWFK-EELPEVSEE 168 (168)
Q Consensus 139 L~~~G~~~v~~l~GG~~~w~~-~g~p~~~~~ 168 (168)
|+.+||+||++|+||+.+|.. .++|++.+.
T Consensus 251 l~~~G~~~v~~y~Gs~~eW~~~~~~P~~~~~ 281 (281)
T PRK11493 251 LATLDVPNVKLYDGAWSEWGARADLPVEPAK 281 (281)
T ss_pred HHHcCCCCceeeCCCHHHHccCCCCCcCCCC
Confidence 999999999999999999998 799998763
No 32
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.83 E-value=1.9e-20 Score=127.94 Aligned_cols=86 Identities=27% Similarity=0.379 Sum_probs=69.8
Q ss_pred CCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhccCCCCCeEEEEeC
Q 030946 34 NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACA 113 (168)
Q Consensus 34 ~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iV~yc~ 113 (168)
++.+|||+|++.+|..||||||+|+|+..+... .+.++. ....+++++||+||.
T Consensus 11 ~~~~iiDvR~~~~~~~~hIpgA~~ip~~~~~~~------------------------~~~~~~--~~~~~~~~~ivv~c~ 64 (96)
T cd01529 11 PGTALLDVRAEDEYAAGHLPGKRSIPGAALVLR------------------------SQELQA--LEAPGRATRYVLTCD 64 (96)
T ss_pred CCeEEEeCCCHHHHcCCCCCCcEeCCHHHhcCC------------------------HHHHHH--hhcCCCCCCEEEEeC
Confidence 478999999999999999999999998654321 111111 122467899999999
Q ss_pred CCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHh
Q 030946 114 TGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK 159 (168)
Q Consensus 114 ~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~ 159 (168)
+|. ++..+++.|+..||+||++|+||+.+|.+
T Consensus 65 ~g~--------------~s~~~~~~l~~~G~~~v~~l~GG~~~W~~ 96 (96)
T cd01529 65 GSL--------------LARFAAQELLALGGKPVALLDGGTSAWVA 96 (96)
T ss_pred ChH--------------HHHHHHHHHHHcCCCCEEEeCCCHHHhcC
Confidence 987 89999999999999999999999999963
No 33
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.83 E-value=2.5e-20 Score=124.29 Aligned_cols=88 Identities=42% Similarity=0.638 Sum_probs=75.3
Q ss_pred HHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhccCCCCC
Q 030946 27 ALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDA 106 (168)
Q Consensus 27 l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (168)
+.+++..++.+|||+|++.+|..+|||||+|+|+..+.... .....++++
T Consensus 2 ~~~~~~~~~~~iiD~R~~~~~~~~~i~ga~~~~~~~~~~~~------------------------------~~~~~~~~~ 51 (89)
T cd00158 2 LKELLDDEDAVLLDVREPEEYAAGHIPGAINIPLSELEERA------------------------------ALLELDKDK 51 (89)
T ss_pred hHHHhcCCCeEEEECCCHHHHhccccCCCEecchHHHhhHH------------------------------HhhccCCCC
Confidence 34455556899999999999999999999999998765421 124568899
Q ss_pred eEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHH
Q 030946 107 KIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF 158 (168)
Q Consensus 107 ~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~ 158 (168)
+||+||+++. ++..+++.|+..||.++++|.||+.+|.
T Consensus 52 ~vv~~c~~~~--------------~a~~~~~~l~~~G~~~v~~l~gG~~~w~ 89 (89)
T cd00158 52 PIVVYCRSGN--------------RSARAAKLLRKAGGTNVYNLEGGMLAWK 89 (89)
T ss_pred eEEEEeCCCc--------------hHHHHHHHHHHhCcccEEEecCChhhcC
Confidence 9999999987 9999999999999999999999999994
No 34
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.83 E-value=3.9e-20 Score=125.73 Aligned_cols=88 Identities=33% Similarity=0.423 Sum_probs=70.0
Q ss_pred HhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhccCCCCCeEE
Q 030946 30 LQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKII 109 (168)
Q Consensus 30 ~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iV 109 (168)
++.+++.+|||+|++.||..+|||||+|+|+..+.... .....+++++||
T Consensus 5 ~~~~~~~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~~------------------------------~~~~~~~~~~iv 54 (92)
T cd01532 5 LLAREEIALIDVREEDPFAQSHPLWAANLPLSRLELDA------------------------------WVRIPRRDTPIV 54 (92)
T ss_pred hhcCCCeEEEECCCHHHHhhCCcccCeeCCHHHHHhhh------------------------------HhhCCCCCCeEE
Confidence 34556899999999999999999999999987643210 001123578999
Q ss_pred EEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHh
Q 030946 110 VACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK 159 (168)
Q Consensus 110 ~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~ 159 (168)
+||.+|.. ..|..+++.|++.||++|++|.||+.+|.+
T Consensus 55 l~c~~G~~------------~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~ 92 (92)
T cd01532 55 VYGEGGGE------------DLAPRAARRLSELGYTDVALLEGGLQGWRA 92 (92)
T ss_pred EEeCCCCc------------hHHHHHHHHHHHcCccCEEEccCCHHHHcC
Confidence 99999871 126899999999999999999999999974
No 35
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.83 E-value=4.7e-20 Score=154.45 Aligned_cols=104 Identities=29% Similarity=0.400 Sum_probs=89.5
Q ss_pred cceecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhh
Q 030946 19 VRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGV 98 (168)
Q Consensus 19 ~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (168)
+..|+++++.+++++ +.+|||+|++.||..||||||+|+|+..+.... .
T Consensus 2 v~~is~~el~~~l~~-~~~ivDvR~~~e~~~ghIpgAi~ip~~~l~~~~---------------------------~--- 50 (376)
T PRK08762 2 IREISPAEARARAAQ-GAVLIDVREAHERASGQAEGALRIPRGFLELRI---------------------------E--- 50 (376)
T ss_pred CceeCHHHHHHHHhC-CCEEEECCCHHHHhCCcCCCCEECCHHHHHHHH---------------------------h---
Confidence 567999999999976 589999999999999999999999987653210 0
Q ss_pred hccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCCCC
Q 030946 99 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE 167 (168)
Q Consensus 99 ~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~~ 167 (168)
....+++++||+||++|. ||..+++.|+..||++|++|+||+.+|++.|+|++..
T Consensus 51 ~~~~~~~~~IvvyC~~G~--------------rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~ 105 (376)
T PRK08762 51 THLPDRDREIVLICASGT--------------RSAHAAATLRELGYTRVASVAGGFSAWKDAGLPLERP 105 (376)
T ss_pred hhcCCCCCeEEEEcCCCc--------------HHHHHHHHHHHcCCCceEeecCcHHHHHhcCCccccc
Confidence 012367899999999987 9999999999999999999999999999999998754
No 36
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.83 E-value=5.3e-20 Score=129.46 Aligned_cols=102 Identities=22% Similarity=0.335 Sum_probs=78.9
Q ss_pred cceecHHHHHHHhhc--CCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHh
Q 030946 19 VRSVEAKEALRLQKE--NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQT 96 (168)
Q Consensus 19 ~~~i~~~~l~~~l~~--~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (168)
++.|+++++.+++.. ++.+|||||++ ||..||||||+|+|+..+.... .++.+.
T Consensus 1 ~~~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA~~ip~~~l~~~~-----------------------~~~~~~ 56 (113)
T cd01531 1 VSYISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGSWHYPSTRFKAQL-----------------------NQLVQL 56 (113)
T ss_pred CCcCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCCEecCHHHHhhCH-----------------------HHHHHH
Confidence 457899999999876 35789999999 9999999999999998764321 111111
Q ss_pred hhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHH--------cCccceeEccccHHHHHhc
Q 030946 97 GVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL--------NGYKNVYHLEGGLYKWFKE 160 (168)
Q Consensus 97 ~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~--------~G~~~v~~l~GG~~~w~~~ 160 (168)
....++++||+||.+++ .|+..++..|.+ .|+.||++|.||+.+|.++
T Consensus 57 ---~~~~~~~~iv~yC~~~~-------------~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~ 112 (113)
T cd01531 57 ---LSGSKKDTVVFHCALSQ-------------VRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS 112 (113)
T ss_pred ---HhcCCCCeEEEEeecCC-------------cchHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence 22367789999998543 288888877654 4999999999999999875
No 37
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.81 E-value=5.9e-20 Score=147.79 Aligned_cols=135 Identities=24% Similarity=0.373 Sum_probs=107.2
Q ss_pred hhhhhHhhhhhhhhccc--------------ceecHHHHHHHhhcCCeEEEecCChhhhhh----------cCCCCcEEe
Q 030946 3 KLSLWIKSVEVFYLLQV--------------RSVEAKEALRLQKENNFVILDVRPEAEFKE----------AHPPGAINV 58 (168)
Q Consensus 3 ~~~~~~~~~~~~~~~~~--------------~~i~~~~l~~~l~~~~~~liDvR~~~e~~~----------ghIpgAi~i 58 (168)
.++.|..++.++..... ..++.++++...+....+|||+|++.+|.. ||||||+|+
T Consensus 125 G~~~W~~~g~p~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAiNi 204 (285)
T COG2897 125 GLPAWKAAGLPLETEPPEPPPTTFSAKYNVKAVVDATLVADALEVPAVLLIDARSPERFRGKEPEPRDGKAGHIPGAINI 204 (285)
T ss_pred CHHHHHHcCCCccCCCCCCCCccccccCCccccCCHHHHHHHhcCCCeEEEecCCHHHhCCCCCCCCCCCCCCCCCCcCc
Confidence 36789999887763221 236677788888877888999999999998 999999999
Q ss_pred chhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHH
Q 030946 59 QIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYL 138 (168)
Q Consensus 59 p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~ 138 (168)
|+..+.++ .+.|...++...+.+ ..+++++++||+||++|. +|+.++..
T Consensus 205 pw~~~~~~--------------~~~~~~~~~~~~l~~---~~gi~~~~~vI~yCgsG~--------------~As~~~~a 253 (285)
T COG2897 205 PWTDLVDD--------------GGLFKSPEEIARLYA---DAGIDPDKEVIVYCGSGV--------------RASVTWLA 253 (285)
T ss_pred CHHHHhcC--------------CCccCcHHHHHHHHH---hcCCCCCCCEEEEcCCch--------------HHHHHHHH
Confidence 99988762 122333333344432 378999999999999998 99999999
Q ss_pred HHHcCccceeEccccHHHHHhc-CCCCCCCC
Q 030946 139 LVLNGYKNVYHLEGGLYKWFKE-ELPEVSEE 168 (168)
Q Consensus 139 L~~~G~~~v~~l~GG~~~w~~~-g~p~~~~~ 168 (168)
|+.+|+.++++|+|++.+|-+. +.|+++++
T Consensus 254 l~~lg~~~~~lYdGSWsEWg~~~~~PV~~g~ 284 (285)
T COG2897 254 LAELGGPNNRLYDGSWSEWGSDPDRPVETGE 284 (285)
T ss_pred HHHhCCCCcccccChHHHhhcCCCCccccCC
Confidence 9999999899999999999775 56998764
No 38
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.80 E-value=1e-19 Score=160.15 Aligned_cols=133 Identities=19% Similarity=0.246 Sum_probs=103.1
Q ss_pred hhhhHhhhhhhhhccc--------------ceecHHHHHHHhhcCCeEEEecCChhhhh--------hcCCCCcEEechh
Q 030946 4 LSLWIKSVEVFYLLQV--------------RSVEAKEALRLQKENNFVILDVRPEAEFK--------EAHPPGAINVQIY 61 (168)
Q Consensus 4 ~~~~~~~~~~~~~~~~--------------~~i~~~~l~~~l~~~~~~liDvR~~~e~~--------~ghIpgAi~ip~~ 61 (168)
+..|..++.++..... ..++.+++.+.+++++.+|||+|++.||. .||||||+|+|+.
T Consensus 117 ~~aW~~ag~p~~~~~~~~~~~~~~~~~~~~~~v~~e~v~~~l~~~~~~iIDaR~~~ef~G~~~~~~r~GHIPGAvnip~~ 196 (610)
T PRK09629 117 VLAWEAQALPLSTDVPPVAGGPVTLTLHDEPTATREYLQSRLGAADLAIWDARAPTEYSGEKVVAAKGGHIPGAVNFEWT 196 (610)
T ss_pred HHHHHHcCCccccCCCCCCCcceeeccCCcccccHHHHHHhhCCCCcEEEECCCccccCCcccccccCCCCCCCeecCHH
Confidence 5678888766543211 14788999999887788999999999995 6999999999997
Q ss_pred hHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHH
Q 030946 62 RLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL 141 (168)
Q Consensus 62 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~ 141 (168)
.++... +.+...+++++++.. .+++++++||+||++|. +|+.+++.|+.
T Consensus 197 ~~~~~~--------------~~lk~~~el~~~~~~---~Gi~~~~~VVvYC~sG~--------------rAa~~~~~L~~ 245 (610)
T PRK09629 197 AGMDKA--------------RNLRIRQDMPEILRD---LGITPDKEVITHCQTHH--------------RSGFTYLVAKA 245 (610)
T ss_pred HhcCCC--------------CCCCCHHHHHHHHHH---cCCCCCCCEEEECCCCh--------------HHHHHHHHHHH
Confidence 654321 122333334444433 67889999999999997 99999999999
Q ss_pred cCccceeEccccHHHHHhc-CCCCCCC
Q 030946 142 NGYKNVYHLEGGLYKWFKE-ELPEVSE 167 (168)
Q Consensus 142 ~G~~~v~~l~GG~~~w~~~-g~p~~~~ 167 (168)
+||+||++|+|||.+|... ++|++..
T Consensus 246 lG~~~V~~YdGsw~eW~~~~~lPv~~~ 272 (610)
T PRK09629 246 LGYPRVKAYAGSWGEWGNHPDTPVEVP 272 (610)
T ss_pred cCCCCcEEeCCCHHHHhCCCCCccccC
Confidence 9999999999999999875 6888753
No 39
>PRK01415 hypothetical protein; Validated
Probab=99.80 E-value=2e-19 Score=142.28 Aligned_cols=103 Identities=26% Similarity=0.437 Sum_probs=87.2
Q ss_pred cceecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhh
Q 030946 19 VRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGV 98 (168)
Q Consensus 19 ~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (168)
-..|+|+++.+++++++.+|||||++.||..||||||+|+|...+.. +++++. .
T Consensus 111 g~~i~p~e~~~ll~~~~~vvIDVRn~~E~~~Ghi~gAinip~~~f~e------------------------~~~~~~--~ 164 (247)
T PRK01415 111 GEYIEPKDWDEFITKQDVIVIDTRNDYEVEVGTFKSAINPNTKTFKQ------------------------FPAWVQ--Q 164 (247)
T ss_pred ccccCHHHHHHHHhCCCcEEEECCCHHHHhcCCcCCCCCCChHHHhh------------------------hHHHHh--h
Confidence 45799999999998889999999999999999999999999876532 111211 1
Q ss_pred hccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcC
Q 030946 99 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEE 161 (168)
Q Consensus 99 ~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g 161 (168)
...++++++|++||.+|. ||..++..|++.||++|+.|.||+.+|.+..
T Consensus 165 ~~~~~k~k~Iv~yCtgGi--------------Rs~kAa~~L~~~Gf~~Vy~L~GGi~~w~~~~ 213 (247)
T PRK01415 165 NQELLKGKKIAMVCTGGI--------------RCEKSTSLLKSIGYDEVYHLKGGILQYLEDT 213 (247)
T ss_pred hhhhcCCCeEEEECCCCh--------------HHHHHHHHHHHcCCCcEEEechHHHHHHHhc
Confidence 134578899999999998 9999999999999999999999999998764
No 40
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.80 E-value=4.1e-19 Score=123.30 Aligned_cols=97 Identities=40% Similarity=0.602 Sum_probs=81.9
Q ss_pred HHHHhhcCCeEEEecCChhhhhhcCCCC-cEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhccCCCC
Q 030946 27 ALRLQKENNFVILDVRPEAEFKEAHPPG-AINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKD 105 (168)
Q Consensus 27 l~~~l~~~~~~liDvR~~~e~~~ghIpg-Ai~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (168)
.......++.++||||.+.||..+|||| ++|+|..++..... ....+++
T Consensus 12 ~~~~~~~~~~~liDvR~~~e~~~~~i~~~~~~ip~~~~~~~~~------------------------------~~~~~~~ 61 (110)
T COG0607 12 AALLLAGEDAVLLDVREPEEYERGHIPGAAINIPLSELKAAEN------------------------------LLELPDD 61 (110)
T ss_pred HHHhhccCCCEEEeccChhHhhhcCCCcceeeeecccchhhhc------------------------------ccccCCC
Confidence 3333444589999999999999999999 99999988754210 0115689
Q ss_pred CeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCCCC
Q 030946 106 AKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE 167 (168)
Q Consensus 106 ~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~~ 167 (168)
++||+||.+|. ||..++..|+..||++++.+.||+.+|...++|++.+
T Consensus 62 ~~ivv~C~~G~--------------rS~~aa~~L~~~G~~~~~~l~gG~~~w~~~~~~~~~~ 109 (110)
T COG0607 62 DPIVVYCASGV--------------RSAAAAAALKLAGFTNVYNLDGGIDAWKGAGLPLVRG 109 (110)
T ss_pred CeEEEEeCCCC--------------ChHHHHHHHHHcCCccccccCCcHHHHHhcCCCcccC
Confidence 99999999998 9999999999999998889999999999999998865
No 41
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.80 E-value=4.8e-19 Score=141.36 Aligned_cols=104 Identities=31% Similarity=0.459 Sum_probs=84.4
Q ss_pred cccceecHHHHHHHhhcC------CeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCc
Q 030946 17 LQVRSVEAKEALRLQKEN------NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN 90 (168)
Q Consensus 17 ~~~~~i~~~~l~~~l~~~------~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (168)
.....|+++++.++++++ +.+|||||++.||..||||||+|+|+..+.. +
T Consensus 107 ~~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAiniPl~~f~~-~----------------------- 162 (257)
T PRK05320 107 GRAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGALDYRIDKFTE-F----------------------- 162 (257)
T ss_pred CcCceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCEeCChhHhhh-h-----------------------
Confidence 345789999999988652 4799999999999999999999999976532 1
Q ss_pred hHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhc
Q 030946 91 PEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE 160 (168)
Q Consensus 91 ~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~ 160 (168)
+.++.. ....+ ++++||+||.+|. ||..++..|++.||++|+.|.||+.+|.+.
T Consensus 163 ~~~l~~-~~~~~-kdk~IvvyC~~G~--------------Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w~~~ 216 (257)
T PRK05320 163 PEALAA-HRADL-AGKTVVSFCTGGI--------------RCEKAAIHMQEVGIDNVYQLEGGILKYFEE 216 (257)
T ss_pred HHHHHh-hhhhc-CCCeEEEECCCCH--------------HHHHHHHHHHHcCCcceEEeccCHHHHHHh
Confidence 111111 11123 7889999999998 999999999999999999999999999875
No 42
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.79 E-value=5.4e-19 Score=144.71 Aligned_cols=103 Identities=26% Similarity=0.426 Sum_probs=86.6
Q ss_pred ccceecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhh
Q 030946 18 QVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTG 97 (168)
Q Consensus 18 ~~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (168)
....++++++.+++.+++.+|||||++.||..||||||+|+|+..+... ..++..
T Consensus 110 ~~~~is~~el~~~l~~~~~vlIDVR~~~E~~~GhI~GAi~ip~~~~~~~------------------------~~~l~~- 164 (314)
T PRK00142 110 VGTYLKPKEVNELLDDPDVVFIDMRNDYEYEIGHFENAIEPDIETFREF------------------------PPWVEE- 164 (314)
T ss_pred CCcccCHHHHHHHhcCCCeEEEECCCHHHHhcCcCCCCEeCCHHHhhhh------------------------HHHHHH-
Confidence 3467999999999988889999999999999999999999999876321 111111
Q ss_pred hhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhc
Q 030946 98 VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE 160 (168)
Q Consensus 98 ~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~ 160 (168)
.....++++||+||.+|. |+..++..|.+.||++|+.|.||+.+|.+.
T Consensus 165 -~~~~~kdk~IvvyC~~G~--------------Rs~~aa~~L~~~Gf~~V~~L~GGi~~w~~~ 212 (314)
T PRK00142 165 -NLDPLKDKKVVMYCTGGI--------------RCEKASAWMKHEGFKEVYQLEGGIITYGED 212 (314)
T ss_pred -hcCCCCcCeEEEECCCCc--------------HHHHHHHHHHHcCCCcEEEecchHHHHHHh
Confidence 123458899999999998 999999999999999999999999999875
No 43
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.79 E-value=4.6e-19 Score=142.65 Aligned_cols=124 Identities=24% Similarity=0.277 Sum_probs=100.4
Q ss_pred ccceecHHHHHHHhhcC-----CeEEEecCCh--hhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCc
Q 030946 18 QVRSVEAKEALRLQKEN-----NFVILDVRPE--AEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN 90 (168)
Q Consensus 18 ~~~~i~~~~l~~~l~~~-----~~~liDvR~~--~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (168)
....|++++|.+.++++ ++.+++++.. .+|..+|||||+++++......... ..+++...+.+
T Consensus 9 ~~~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~~----------~~~~lp~~e~f 78 (285)
T COG2897 9 SEFLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPVP----------LPHMLPSPEQF 78 (285)
T ss_pred cceEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCCC----------CCCCCCCHHHH
Confidence 45679999999999855 6666666665 8999999999999999887653321 23445444444
Q ss_pred hHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCCCC
Q 030946 91 PEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE 167 (168)
Q Consensus 91 ~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~~ 167 (168)
.+.+ ...++.++++||+|+..+. ..|.+++|.|+.+|++||++|+||+.+|+++|+|++.+
T Consensus 79 a~~~---~~~GI~~d~tVVvYdd~~~-------------~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~~ 139 (285)
T COG2897 79 AKLL---GELGIRNDDTVVVYDDGGG-------------FFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLETE 139 (285)
T ss_pred HHHH---HHcCCCCCCEEEEECCCCC-------------eehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccCC
Confidence 4544 4599999999999999887 48999999999999999999999999999999999864
No 44
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.79 E-value=7.1e-19 Score=121.82 Aligned_cols=80 Identities=24% Similarity=0.375 Sum_probs=67.6
Q ss_pred CeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhccCCCCCeEEEEeCC
Q 030946 35 NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACAT 114 (168)
Q Consensus 35 ~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iV~yc~~ 114 (168)
...+||+|++.||..||||||+|+|+.++.... .....+++++||+||.+
T Consensus 18 ~~~lIDvR~~~ef~~ghIpgAinip~~~l~~~l------------------------------~~~~~~~~~~vvlyC~~ 67 (101)
T TIGR02981 18 AEHWIDVRIPEQYQQEHIQGAINIPLKEIKEHI------------------------------ATAVPDKNDTVKLYCNA 67 (101)
T ss_pred CCEEEECCCHHHHhcCCCCCCEECCHHHHHHHH------------------------------HHhCCCCCCeEEEEeCC
Confidence 677999999999999999999999997764321 01123567899999999
Q ss_pred CCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHh
Q 030946 115 GGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK 159 (168)
Q Consensus 115 g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~ 159 (168)
|. +|..++..|.+.||++++++ ||+.+|..
T Consensus 68 G~--------------rS~~aa~~L~~~G~~~v~~~-GG~~~~~~ 97 (101)
T TIGR02981 68 GR--------------QSGMAKDILLDMGYTHAENA-GGIKDIAM 97 (101)
T ss_pred CH--------------HHHHHHHHHHHcCCCeEEec-CCHHHhhh
Confidence 98 99999999999999999986 99999975
No 45
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.78 E-value=9e-19 Score=123.23 Aligned_cols=99 Identities=22% Similarity=0.422 Sum_probs=73.5
Q ss_pred ceecHHHHHHHhhcC------CeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHH
Q 030946 20 RSVEAKEALRLQKEN------NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEF 93 (168)
Q Consensus 20 ~~i~~~~l~~~l~~~------~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (168)
+.|+++++.+++.++ +.+|||||++ ||..||||||+|+|+..+.... . +.
T Consensus 2 ~~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi~ip~~~~~~~~-~----------------------~~ 57 (113)
T cd01443 2 KYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSINLPAQSCYQTL-P----------------------QV 57 (113)
T ss_pred cccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCceecchhHHHHHH-H----------------------HH
Confidence 568999999999874 5899999999 9999999999999998754321 0 11
Q ss_pred HHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHH----HcCc--cceeEccccHHHHH
Q 030946 94 LQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLV----LNGY--KNVYHLEGGLYKWF 158 (168)
Q Consensus 94 ~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~----~~G~--~~v~~l~GG~~~w~ 158 (168)
++. ....+.++||+||.+++ .|+..++..|. +.|| .++++|.||+.+|.
T Consensus 58 ~~~---~~~~~~~~iv~~C~~~g-------------~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~ 112 (113)
T cd01443 58 YAL---FSLAGVKLAIFYCGSSQ-------------GRGPRAARWFADYLRKVGESLPKSYILTGGIKAWY 112 (113)
T ss_pred HHH---hhhcCCCEEEEECCCCC-------------cccHHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence 110 11234578999999753 27777776544 4575 68999999999996
No 46
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.78 E-value=1.4e-18 Score=146.32 Aligned_cols=104 Identities=26% Similarity=0.423 Sum_probs=88.6
Q ss_pred cccceecHHHHHHHhhcC-CeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHH
Q 030946 17 LQVRSVEAKEALRLQKEN-NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQ 95 (168)
Q Consensus 17 ~~~~~i~~~~l~~~l~~~-~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (168)
.....|+++++.++++++ +.+|||+|++.||..+|||||+|+|+..+....
T Consensus 284 ~~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIpGAinip~~~l~~~~---------------------------- 335 (392)
T PRK07878 284 AAGSTITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGAQLIPKSEILSGE---------------------------- 335 (392)
T ss_pred CCCCccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCCCCEEcChHHhcchh----------------------------
Confidence 345679999999999764 578999999999999999999999998764311
Q ss_pred hhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCC
Q 030946 96 TGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPE 164 (168)
Q Consensus 96 ~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~ 164 (168)
....++++++||+||.+|. ||..+++.|++.||++|++|.||+.+|..+..|.
T Consensus 336 --~~~~l~~d~~iVvyC~~G~--------------rS~~aa~~L~~~G~~~V~~L~GG~~~W~~~~~~~ 388 (392)
T PRK07878 336 --ALAKLPQDRTIVLYCKTGV--------------RSAEALAALKKAGFSDAVHLQGGVVAWAKQVDPS 388 (392)
T ss_pred --HHhhCCCCCcEEEEcCCCh--------------HHHHHHHHHHHcCCCcEEEecCcHHHHHHhcCCC
Confidence 1134678899999999987 9999999999999999999999999999886553
No 47
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.77 E-value=2.2e-18 Score=119.91 Aligned_cols=80 Identities=25% Similarity=0.363 Sum_probs=67.1
Q ss_pred CeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhccCCCCCeEEEEeCC
Q 030946 35 NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACAT 114 (168)
Q Consensus 35 ~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iV~yc~~ 114 (168)
+-++||+|++.||..+|||||+|+|+..+.... .....+++++||+||.+
T Consensus 20 ~~~lIDvR~~~ef~~ghIpGAiniP~~~l~~~l------------------------------~~l~~~~~~~IVlyC~~ 69 (104)
T PRK10287 20 AEHWIDVRVPEQYQQEHVQGAINIPLKEVKERI------------------------------ATAVPDKNDTVKLYCNA 69 (104)
T ss_pred CCEEEECCCHHHHhcCCCCccEECCHHHHHHHH------------------------------HhcCCCCCCeEEEEeCC
Confidence 567999999999999999999999997653311 11234567889999999
Q ss_pred CCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHh
Q 030946 115 GGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK 159 (168)
Q Consensus 115 g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~ 159 (168)
|. ||..++..|.+.||+++++ .||+.+|.-
T Consensus 70 G~--------------rS~~aa~~L~~~G~~~v~~-~GG~~~~~~ 99 (104)
T PRK10287 70 GR--------------QSGQAKEILSEMGYTHAEN-AGGLKDIAM 99 (104)
T ss_pred Ch--------------HHHHHHHHHHHcCCCeEEe-cCCHHHHhh
Confidence 97 9999999999999999987 699999974
No 48
>PRK07411 hypothetical protein; Validated
Probab=99.74 E-value=1.2e-17 Score=140.42 Aligned_cols=108 Identities=27% Similarity=0.430 Sum_probs=87.8
Q ss_pred cccceecHHHHHHHhhcC--CeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHH
Q 030946 17 LQVRSVEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFL 94 (168)
Q Consensus 17 ~~~~~i~~~~l~~~l~~~--~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (168)
..+..|+++++.++++++ +.+|||||++.||..||||||+|+|+.++..... .+
T Consensus 279 ~~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIpGAiniP~~~l~~~~~----------------------~~-- 334 (390)
T PRK07411 279 AEIPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIPGSVLVPLPDIENGPG----------------------VE-- 334 (390)
T ss_pred cccCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCCCCEEccHHHhhcccc----------------------hH--
Confidence 345689999999999764 5799999999999999999999999987643110 00
Q ss_pred HhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCCC
Q 030946 95 QTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVS 166 (168)
Q Consensus 95 ~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~ 166 (168)
....+.++++||+||.+|. ||..+++.|++.||++ +.|.||+.+|.+...|..+
T Consensus 335 ---~l~~l~~d~~IVvyC~~G~--------------RS~~aa~~L~~~G~~~-~~l~GG~~~W~~~~~p~~p 388 (390)
T PRK07411 335 ---KVKELLNGHRLIAHCKMGG--------------RSAKALGILKEAGIEG-TNVKGGITAWSREVDPSVP 388 (390)
T ss_pred ---HHhhcCCCCeEEEECCCCH--------------HHHHHHHHHHHcCCCe-EEecchHHHHHHhcCCCCC
Confidence 1123567899999999997 9999999999999985 6799999999998777654
No 49
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.73 E-value=1.3e-17 Score=138.84 Aligned_cols=97 Identities=26% Similarity=0.441 Sum_probs=81.0
Q ss_pred ccceecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhh
Q 030946 18 QVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTG 97 (168)
Q Consensus 18 ~~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (168)
....++++++.+... +.+|||+|++.||..+|||||+|+|+..+...+.
T Consensus 259 ~~~~i~~~~~~~~~~--~~~IIDVR~~~ef~~ghIpgAinip~~~l~~~~~----------------------------- 307 (355)
T PRK05597 259 FGEVLDVPRVSALPD--GVTLIDVREPSEFAAYSIPGAHNVPLSAIREGAN----------------------------- 307 (355)
T ss_pred cccccCHHHHHhccC--CCEEEECCCHHHHccCcCCCCEEeCHHHhhhccc-----------------------------
Confidence 345788888885542 5799999999999999999999999987654221
Q ss_pred hhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhc
Q 030946 98 VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE 160 (168)
Q Consensus 98 ~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~ 160 (168)
...++++++||+||++|. +|.++++.|++.||++|++|+||+.+|.++
T Consensus 308 -~~~~~~~~~IvvyC~~G~--------------rS~~Aa~~L~~~G~~nV~~L~GGi~~W~~~ 355 (355)
T PRK05597 308 -PPSVSAGDEVVVYCAAGV--------------RSAQAVAILERAGYTGMSSLDGGIEGWLDS 355 (355)
T ss_pred -cccCCCCCeEEEEcCCCH--------------HHHHHHHHHHHcCCCCEEEecCcHHHHhhC
Confidence 123567889999999987 999999999999999999999999999763
No 50
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.72 E-value=2e-17 Score=135.19 Aligned_cols=111 Identities=27% Similarity=0.342 Sum_probs=75.6
Q ss_pred CeEEEecCChhhhhhcCCCCcEEechhhHHhhh--------hHHHHHHHhhhhhccccCCCCCchHHHHhhhhccCCCCC
Q 030946 35 NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEW--------TAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDA 106 (168)
Q Consensus 35 ~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (168)
..+|||||++.||..||||||+|+|+.+...+. .+...++..+..+.+ ..+++++++ .....+++.
T Consensus 2 ~~~liDVRsp~Ef~~ghipgAiniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~-----~~l~~~i~~-~~~~~~~~~ 75 (311)
T TIGR03167 2 FDPLIDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVS-----PNLAAHVEQ-WRAFADGPP 75 (311)
T ss_pred CCEEEECCCHHHHhcCCCcCCEecccccchhhhhhhhhhhcccHHHHHHHhHhhhh-----HHHHHHHHH-HHhhcCCCC
Confidence 468999999999999999999999996532211 111112222111111 133444444 223345556
Q ss_pred eEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCC
Q 030946 107 KIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEV 165 (168)
Q Consensus 107 ~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~ 165 (168)
.||+||..++ .||..+++.|...|| ++++|.||+.+|+..+.+..
T Consensus 76 ~vvvyC~~gG-------------~RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~~~~~~ 120 (311)
T TIGR03167 76 QPLLYCWRGG-------------MRSGSLAWLLAQIGF-RVPRLEGGYKAYRRFVIDQL 120 (311)
T ss_pred cEEEEECCCC-------------hHHHHHHHHHHHcCC-CEEEecChHHHHHHhhhhhh
Confidence 6999996433 299999999999999 69999999999998876543
No 51
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.71 E-value=4e-17 Score=135.12 Aligned_cols=120 Identities=23% Similarity=0.259 Sum_probs=80.3
Q ss_pred cHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhh--------HHHHHHHhhhhhccccCCCCCchHHH
Q 030946 23 EAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWT--------AWDIARRAAFAFFGIFSGTEENPEFL 94 (168)
Q Consensus 23 ~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (168)
+..++.+.+.+ +.+|||||++.||..||||||+|+|+.+...+.. +...+...+. .+. ..++.+.+
T Consensus 4 ~~~~~~~~~~~-~~~lIDVRsp~Ef~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~~a~~lg~----~lv-~~~l~~~~ 77 (345)
T PRK11784 4 DAQDFRALFLN-DTPLIDVRSPIEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAIALGH----ALV-AGNIAAHR 77 (345)
T ss_pred cHHHHHHHHhC-CCEEEECCCHHHHhcCCCCCeeeCCCCChhHHHhhchhhcccCHHHHHHhhh----hhc-chhHHHHH
Confidence 45667766644 7899999999999999999999999965432110 1111111110 011 12223333
Q ss_pred HhhhhccC-CCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCC
Q 030946 95 QTGVESQL-DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELP 163 (168)
Q Consensus 95 ~~~~~~~~-~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p 163 (168)
.+ ..... .++++||+||..|+ .||..+++.|...|| ++++|.||+.+|+..+.+
T Consensus 78 ~~-~~~~~~~~~~~ivvyC~rgG-------------~RS~~aa~~L~~~G~-~v~~L~GG~~awr~~~~~ 132 (345)
T PRK11784 78 EE-AWADFPRANPRGLLYCWRGG-------------LRSGSVQQWLKEAGI-DVPRLEGGYKAYRRFVID 132 (345)
T ss_pred HH-HHHhcccCCCeEEEEECCCC-------------hHHHHHHHHHHHcCC-CcEEEcCCHHHHHHhhHH
Confidence 22 11122 37889999996544 399999999999999 599999999999987653
No 52
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.71 E-value=1.1e-16 Score=115.36 Aligned_cols=123 Identities=20% Similarity=0.240 Sum_probs=79.3
Q ss_pred eecHHHHHHHhhc--CCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhh
Q 030946 21 SVEAKEALRLQKE--NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGV 98 (168)
Q Consensus 21 ~i~~~~l~~~l~~--~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (168)
.|+++++.+++++ .+.+|||+|+..+|..+|||||+|+|+..+..+........ ...++ ..++....
T Consensus 1 ~is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~ai~i~~~~~~~~~~~~~~~~-----~~~~~----~~~~~~~~-- 69 (132)
T cd01446 1 TIDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGAVNVCCPTILRRRLQGGKIL-----LQQLL----SCPEDRDR-- 69 (132)
T ss_pred CcCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCcEecChHHHHHHhhcccchh-----hhhhc----CCHHHHHH--
Confidence 3789999999975 37999999999999999999999999987643221100000 00001 11111111
Q ss_pred hccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHH--cCccceeEccccHHHHHhc
Q 030946 99 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL--NGYKNVYHLEGGLYKWFKE 160 (168)
Q Consensus 99 ~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~--~G~~~v~~l~GG~~~w~~~ 160 (168)
.... ++++|||||.++..|+- . ....++..++..|.. .|+.+|++|.||+.+|.+.
T Consensus 70 l~~~-~~~~VVvYd~~~~~~~~---~--~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~~ 127 (132)
T cd01446 70 LRRG-ESLAVVVYDESSSDRER---L--REDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSSE 127 (132)
T ss_pred HhcC-CCCeEEEEeCCCcchhh---c--cccchHHHHHHHHHHhcCCCceEEEEcchHHHHHhh
Confidence 1122 67899999998863100 0 001246666677776 3667899999999999764
No 53
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.64 E-value=5.4e-16 Score=129.63 Aligned_cols=95 Identities=21% Similarity=0.300 Sum_probs=77.4
Q ss_pred ceecHHHHHHHhhcCCeEEEecCChhhhhhcCCC---CcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHh
Q 030946 20 RSVEAKEALRLQKENNFVILDVRPEAEFKEAHPP---GAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQT 96 (168)
Q Consensus 20 ~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIp---gAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (168)
.+++++++.+++.+++.+|||||++.||..+||| ||+|+|+..+.... .+.+
T Consensus 271 ~~~~~~el~~~l~~~~~~lIDVR~~~E~~~ghI~~~~gAinIPl~~l~~~~------------------------~~~~- 325 (370)
T PRK05600 271 ARTDTTSLIDATLNGSATLLDVREPHEVLLKDLPEGGASLKLPLSAITDDA------------------------DILH- 325 (370)
T ss_pred cccCHHHHHHHHhcCCeEEEECCCHHHhhhccCCCCCccEeCcHHHhhcch------------------------hhhh-
Confidence 3789999999998777899999999999999998 59999998874311 0000
Q ss_pred hhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccc-eeEccccHH
Q 030946 97 GVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKN-VYHLEGGLY 155 (168)
Q Consensus 97 ~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~-v~~l~GG~~ 155 (168)
....++++ +||+||.+|. ||..++..|++.||++ |+.|.||+.
T Consensus 326 -~l~~~~~~-~Ivv~C~sG~--------------RS~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 326 -ALSPIDGD-NVVVYCASGI--------------RSADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred -hccccCCC-cEEEECCCCh--------------hHHHHHHHHHHcCCCCceEEeccccC
Confidence 11234444 9999999998 9999999999999986 999999985
No 54
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=99.54 E-value=9.2e-15 Score=116.91 Aligned_cols=101 Identities=31% Similarity=0.509 Sum_probs=86.9
Q ss_pred ceecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhh
Q 030946 20 RSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVE 99 (168)
Q Consensus 20 ~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (168)
.-|+|+++.++++++++++||+|+..||+.||+.|||+.+...+. ++++++++ .
T Consensus 113 ~yl~p~~wn~~l~D~~~vviDtRN~YE~~iG~F~gAv~p~~~tFr------------------------efP~~v~~-~- 166 (308)
T COG1054 113 TYLSPKDWNELLSDPDVVVIDTRNDYEVAIGHFEGAVEPDIETFR------------------------EFPAWVEE-N- 166 (308)
T ss_pred CccCHHHHHHHhcCCCeEEEEcCcceeEeeeeecCccCCChhhhh------------------------hhHHHHHH-H-
Confidence 358999999999999999999999999999999999999987763 34555554 2
Q ss_pred ccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhc
Q 030946 100 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE 160 (168)
Q Consensus 100 ~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~ 160 (168)
....++++||.||.+|. |+..+..+|...||++|+.|.||+-.|.+.
T Consensus 167 ~~~~~~KkVvmyCTGGI--------------RCEKas~~m~~~GF~eVyhL~GGIl~Y~e~ 213 (308)
T COG1054 167 LDLLKDKKVVMYCTGGI--------------RCEKASAWMKENGFKEVYHLEGGILKYLED 213 (308)
T ss_pred HHhccCCcEEEEcCCce--------------eehhhHHHHHHhcchhhhcccchHHHHhhh
Confidence 23346679999999998 999999999999999999999999888654
No 55
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=99.52 E-value=4.3e-14 Score=112.47 Aligned_cols=122 Identities=20% Similarity=0.235 Sum_probs=99.2
Q ss_pred ceecHHHHHHHhhcCCeEEEecC---------ChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCc
Q 030946 20 RSVEAKEALRLQKENNFVILDVR---------PEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN 90 (168)
Q Consensus 20 ~~i~~~~l~~~l~~~~~~liDvR---------~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (168)
..++++.+.+.+..++..|||.- ...||..-|||||+++.++.....- ....++++..+.+
T Consensus 5 ~iv~~~~v~~~~~~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s----------~~~~~~lp~~e~F 74 (286)
T KOG1529|consen 5 SIVSVKWVMENLGNHGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPS----------SPYRHMLPTAEHF 74 (286)
T ss_pred cccChHHHHHhCcCCCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCC----------CcccccCccHHHH
Confidence 35788899999988889999986 4567888999999999998764321 2234555555555
Q ss_pred hHHHHhhhhccCCCCCeEEEEeC--CCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCCCC
Q 030946 91 PEFLQTGVESQLDKDAKIIVACA--TGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE 167 (168)
Q Consensus 91 ~~~~~~~~~~~~~~~~~iV~yc~--~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~~ 167 (168)
++++.. .++.+++.+|||+. .|. ..|.+++|+++-+|+++|.+|.||+..|+++|.|+.++
T Consensus 75 a~y~~~---lGi~n~d~vViYd~~~~Gm-------------~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~s~ 137 (286)
T KOG1529|consen 75 AEYASR---LGVDNGDHVVIYDRGDGGM-------------FSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVDSS 137 (286)
T ss_pred HHHHHh---cCCCCCCeEEEEcCCCcce-------------eehhhHHHHHHHhCccEEEEecCcHHHHHHcCCccccc
Confidence 666655 89999999999999 443 57889999999999999999999999999999999875
No 56
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.41 E-value=7.6e-13 Score=114.25 Aligned_cols=81 Identities=22% Similarity=0.295 Sum_probs=66.9
Q ss_pred HHHHHHhhcCCeEEEecCChhhhhhcCCCC----cEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhc
Q 030946 25 KEALRLQKENNFVILDVRPEAEFKEAHPPG----AINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVES 100 (168)
Q Consensus 25 ~~l~~~l~~~~~~liDvR~~~e~~~ghIpg----Ai~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (168)
.+..+.+.. +.++||||++.||..+|||| |+|+|+..+... ..
T Consensus 398 ~~~~~~~~~-~~~lIDVR~~~E~~~~hI~g~~~~a~niP~~~l~~~--------------------------------~~ 444 (482)
T PRK01269 398 VETVSELPP-DDVIIDIRSPDEQEDKPLKLEGVEVKSLPFYKLSTQ--------------------------------FG 444 (482)
T ss_pred hHHHHhcCC-CCEEEECCCHHHHhcCCCCCCCceEEECCHHHHHHH--------------------------------Hh
Confidence 334444433 78999999999999999999 999999877532 12
Q ss_pred cCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccc
Q 030946 101 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEG 152 (168)
Q Consensus 101 ~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~G 152 (168)
.++++++||+||.+|. ||..++..|...||+||++|.+
T Consensus 445 ~l~~~~~iivyC~~G~--------------rS~~aa~~L~~~G~~nv~~y~~ 482 (482)
T PRK01269 445 DLDQSKTYLLYCDRGV--------------MSRLQALYLREQGFSNVKVYRP 482 (482)
T ss_pred hcCCCCeEEEECCCCH--------------HHHHHHHHHHHcCCccEEecCC
Confidence 3578889999999998 9999999999999999998753
No 57
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=99.40 E-value=5.9e-13 Score=107.96 Aligned_cols=107 Identities=23% Similarity=0.385 Sum_probs=80.6
Q ss_pred hcccceecHHHHHHHhhcC------CeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCC
Q 030946 16 LLQVRSVEAKEALRLQKEN------NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEE 89 (168)
Q Consensus 16 ~~~~~~i~~~~l~~~l~~~------~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (168)
...++.|+++.|+.+++.. .++|||+|-+.||.+|||+||+|+.........
T Consensus 152 ~~~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgavnl~~~~~~~~~---------------------- 209 (325)
T KOG3772|consen 152 SQDLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAVNLYSKELLQDF---------------------- 209 (325)
T ss_pred cccccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccceecccHhhhhhh----------------------
Confidence 4668899999999999752 477999999999999999999999986653321
Q ss_pred chHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHH------------cCccceeEccccHHHH
Q 030946 90 NPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL------------NGYKNVYHLEGGLYKW 157 (168)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~------------~G~~~v~~l~GG~~~w 157 (168)
|........-.....+||||.-.. .|+..+|..|+. +-|..+|+|+|||..|
T Consensus 210 ---f~~~~~~~~~~~~~i~IFhCefSq-------------~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~f 273 (325)
T KOG3772|consen 210 ---FLLKDGVPSGSKRVILIFHCEFSQ-------------ERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEF 273 (325)
T ss_pred ---hccccccccccCceeEEEEeeecc-------------ccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHH
Confidence 110000000123457999999987 599999999994 3567899999999999
Q ss_pred Hhc
Q 030946 158 FKE 160 (168)
Q Consensus 158 ~~~ 160 (168)
...
T Consensus 274 f~~ 276 (325)
T KOG3772|consen 274 FSN 276 (325)
T ss_pred HHh
Confidence 764
No 58
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.22 E-value=2.7e-11 Score=98.93 Aligned_cols=108 Identities=23% Similarity=0.335 Sum_probs=84.9
Q ss_pred cceecHHHHHHHhhc-CCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhh
Q 030946 19 VRSVEAKEALRLQKE-NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTG 97 (168)
Q Consensus 19 ~~~i~~~~l~~~l~~-~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (168)
-.+|+..|+++.+++ ...++||||++.||+..|+|+|+|||+.++..... .+.
T Consensus 316 ~~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~lP~avNIPL~~l~~~~~----------------------~~~---- 369 (427)
T KOG2017|consen 316 DERVSVTDYKRILDSGAKHLLLDVRPSHEYEICRLPEAVNIPLKELRSRSG----------------------KKL---- 369 (427)
T ss_pred hhcccHHHHHHHHhcCCCeEEEeccCcceEEEEecccccccchhhhhhhhh----------------------hhh----
Confidence 457999999999987 48999999999999999999999999998865321 000
Q ss_pred hhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCcc-ceeEccccHHHHHhcCCCCCC
Q 030946 98 VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYK-NVYHLEGGLYKWFKEELPEVS 166 (168)
Q Consensus 98 ~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~-~v~~l~GG~~~w~~~g~p~~~ 166 (168)
....-...++|+++|..|. .|.++.+.|++.... +|.-+.||+.+|...-.|..+
T Consensus 370 ~~~~~~~~~~I~ViCrrGN--------------dSQ~Av~~Lre~~~~~~vrDvigGl~~w~~~vd~~fP 425 (427)
T KOG2017|consen 370 QGDLNTESKDIFVICRRGN--------------DSQRAVRILREKFPDSSVRDVIGGLKAWAAKVDPNFP 425 (427)
T ss_pred cccccccCCCEEEEeCCCC--------------chHHHHHHHHhhCCchhhhhhhhHHHHHHHhcCcCCC
Confidence 0011234567999999998 899999999986653 577889999999987655543
No 59
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=99.11 E-value=1.2e-10 Score=92.99 Aligned_cols=125 Identities=23% Similarity=0.354 Sum_probs=90.7
Q ss_pred hhhhHhhhhhhhhcccc----------eecHHHHHHH-------hhcCCeEEEecCChhhhh-----------hcCCCCc
Q 030946 4 LSLWIKSVEVFYLLQVR----------SVEAKEALRL-------QKENNFVILDVRPEAEFK-----------EAHPPGA 55 (168)
Q Consensus 4 ~~~~~~~~~~~~~~~~~----------~i~~~~l~~~-------l~~~~~~liDvR~~~e~~-----------~ghIpgA 55 (168)
+..|++++.++.+..+. .++..-+... +...+...||.|...+|. .||||||
T Consensus 124 ~~~Wk~~g~~~~s~~~~~p~~~~~~~~~~d~~il~~~edi~~n~~~~~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa 203 (286)
T KOG1529|consen 124 FRAWKAAGGPVDSSKVETPYSPIVFVASLDNSILATLEDIPFNNLATKNFQYLDARSKGRFDGTEPEPRSGATGGHIPGA 203 (286)
T ss_pred HHHHHHcCCccccccccCCCCCccchhhcchHHHHHHhhccccccccccceeeeccccccccccCCCCcccCcCccCCCc
Confidence 67899998888766642 1222222221 223478999999998884 6899999
Q ss_pred EEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHH
Q 030946 56 INVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIA 135 (168)
Q Consensus 56 i~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a 135 (168)
+|+|+.++..... ..+..+++.... ...++..++++|+-|+.|. .++..
T Consensus 204 ~n~P~~~~~~~~g--------------~~k~~edl~~~f---~~~~l~~~~p~~~sC~~Gi--------------sa~~i 252 (286)
T KOG1529|consen 204 INFPFDEVLDPDG--------------FIKPAEDLKHLF---AQKGLKLSKPVIVSCGTGI--------------SASII 252 (286)
T ss_pred ccCChHHhccccc--------------ccCCHHHHHHHH---HhcCcccCCCEEEeeccch--------------hHHHH
Confidence 9999998865321 111123333333 3367778999999999998 89999
Q ss_pred HHHHHHcCccceeEccccHHHHHhc
Q 030946 136 AYLLVLNGYKNVYHLEGGLYKWFKE 160 (168)
Q Consensus 136 ~~~L~~~G~~~v~~l~GG~~~w~~~ 160 (168)
+..|...| .++.+|+|++..|...
T Consensus 253 ~~al~r~g-~~~~lYdGS~~Ew~~~ 276 (286)
T KOG1529|consen 253 ALALERSG-PDAKLYDGSWTEWALR 276 (286)
T ss_pred HHHHHhcC-CCcceecccHHHHhhc
Confidence 99999999 7899999999999854
No 60
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=98.65 E-value=8.5e-08 Score=77.86 Aligned_cols=103 Identities=22% Similarity=0.332 Sum_probs=78.1
Q ss_pred hcccceecHHHHHHHhhcC------CeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCC
Q 030946 16 LLQVRSVEAKEALRLQKEN------NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEE 89 (168)
Q Consensus 16 ~~~~~~i~~~~l~~~l~~~------~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (168)
...+.+|+++.++..++.. +++|||+|-+.||..|||-.||||.-..-..
T Consensus 238 ~Ds~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaVNi~s~~~l~------------------------ 293 (427)
T COG5105 238 SDSIQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAVNISSTKKLG------------------------ 293 (427)
T ss_pred ccchhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeeeecchHHHHH------------------------
Confidence 3456789999999998743 6889999999999999999999997533211
Q ss_pred chHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHc------------CccceeEccccHHHH
Q 030946 90 NPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLN------------GYKNVYHLEGGLYKW 157 (168)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~------------G~~~v~~l~GG~~~w 157 (168)
..|+ ..-+.-...+|+.|.-.. .|+...|..|+.. =|..|++|+|||..+
T Consensus 294 -~~F~----hkplThp~aLifHCEfSs-------------hRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~f 355 (427)
T COG5105 294 -LLFR----HKPLTHPRALIFHCEFSS-------------HRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKF 355 (427)
T ss_pred -HHHH----hccccCceeEEEEeeccc-------------ccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHH
Confidence 0111 112344567999999876 5999999999863 367899999999987
Q ss_pred Hhc
Q 030946 158 FKE 160 (168)
Q Consensus 158 ~~~ 160 (168)
-+.
T Consensus 356 y~n 358 (427)
T COG5105 356 YSN 358 (427)
T ss_pred hhc
Confidence 654
No 61
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=97.67 E-value=4.3e-05 Score=61.01 Aligned_cols=120 Identities=19% Similarity=0.204 Sum_probs=74.3
Q ss_pred eecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhc
Q 030946 21 SVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVES 100 (168)
Q Consensus 21 ~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (168)
.++.+++.+.++.++.+++|+|+ +..||.+|+++.++.++.+... .....+...+++..+...+-.+
T Consensus 5 ~~s~~wlnr~l~~~nllllDCRs----es~~i~~A~~valPalmlrrl~-----~g~l~~ra~~p~~~d~~~~~~~---- 71 (343)
T KOG1717|consen 5 SKSVAWLNRQLELGNLLLLDCRS----ESSHIESAINVALPALMLRRLT-----GGNLPVRALFPRSCDDKRFPAR---- 71 (343)
T ss_pred HHHHHHHHhhcccCceEEEecCC----ccchhhhhhhhcchHHHHHHHh-----CCCCcceeccCCcccccccccc----
Confidence 46788999999888999999999 6789999999999988765421 1112222223333322222111
Q ss_pred cCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhc
Q 030946 101 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE 160 (168)
Q Consensus 101 ~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~ 160 (168)
=+...+|.|+.+...|-+-++ ...---..-+.++..|+. ++.|.|||..++++
T Consensus 72 --c~~v~vilyD~~~~e~e~~~~----~~s~Lg~ll~kl~~~g~~-a~yL~ggF~~fq~e 124 (343)
T KOG1717|consen 72 --CGTVTVILYDESSAEWEEETG----AESVLGLLLKKLKDEGCS-ARYLSGGFSKFQAE 124 (343)
T ss_pred --CCcceeeecccccccccccch----hhhHHHHHHHHHHhcCcc-hhhhhcccchhhhh
Confidence 133679999998554432100 000001123455667885 99999999988765
No 62
>COG2603 Predicted ATPase [General function prediction only]
Probab=97.66 E-value=6.7e-05 Score=60.58 Aligned_cols=117 Identities=22% Similarity=0.217 Sum_probs=68.1
Q ss_pred HHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhh-HHHHHH---HhhhhhccccCCCCCchHHHHhhhhc
Q 030946 25 KEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWT-AWDIAR---RAAFAFFGIFSGTEENPEFLQTGVES 100 (168)
Q Consensus 25 ~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (168)
+++..++- .+..+||||.+-||..|+.|+++|+|..+--.... +...-+ ..+.++.+-...-+-..+.+.. ..
T Consensus 6 q~~~~~~~-~~~~lid~rap~ef~~g~~~ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~a--sk 82 (334)
T COG2603 6 QDYRALLL-ADTPLIDVRAPIEFENGAMPIAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEA--SK 82 (334)
T ss_pred HHHHHHHh-cCCceeeccchHHHhcccchhhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHH--HH
Confidence 44444444 48999999999999999999999999854321110 000000 0011111111111111122222 11
Q ss_pred cCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHH-HHcCccceeEccccHHHHH
Q 030946 101 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLL-VLNGYKNVYHLEGGLYKWF 158 (168)
Q Consensus 101 ~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L-~~~G~~~v~~l~GG~~~w~ 158 (168)
....+.++-++|..|+ .|+...+.+| ...|.+ +--+.||+.+.+
T Consensus 83 ~f~e~~~~Gi~c~rgg-------------~rsk~v~~~l~~~~g~~-~~r~iGGeKalr 127 (334)
T COG2603 83 AFQEENPVGILCARGG-------------LRSKIVQKWLGYAAGID-YPRVIGGEKALR 127 (334)
T ss_pred HHHHhCCcceeecccc-------------chhHHHHHHHHHHHHhh-hhhhhchHHHHH
Confidence 1233456666799998 6999999999 778875 666779987754
No 63
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=96.84 E-value=0.00031 Score=61.43 Aligned_cols=104 Identities=18% Similarity=0.211 Sum_probs=71.6
Q ss_pred hhcccceecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHH
Q 030946 15 YLLQVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFL 94 (168)
Q Consensus 15 ~~~~~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (168)
.+..+++|+++++..+ ....++|.|...||..+|+++++|+|+.. ......|. .++
T Consensus 617 ~se~~prmsAedl~~~---~~l~v~d~r~~~ef~r~~~s~s~nip~~~-~ea~l~~~--------------------~~l 672 (725)
T KOG1093|consen 617 SSEHCPRISAEDLIWL---KMLYVLDTRQESEFQREHFSDSINIPFNN-HEADLDWL--------------------RFL 672 (725)
T ss_pred hhhcCccccHHHHHHH---HHHHHHhHHHHHHHHHhhccccccCCccc-hHHHHHHh--------------------hcc
Confidence 4667889999998776 46899999999999999999999999972 11111110 000
Q ss_pred HhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHh
Q 030946 95 QTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK 159 (168)
Q Consensus 95 ~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~ 159 (168)
........+.+|++....+ -+.+....+..+-+.++.++.+|++....
T Consensus 673 ---~~~~~~~~~~~v~~~~~~K--------------~~~e~~~~~~~mk~p~~cil~~~~~~~~~ 720 (725)
T KOG1093|consen 673 ---PGIVCSEGKKCVVVGKNDK--------------HAAERLTELYVMKVPRICILHDGFNNIDP 720 (725)
T ss_pred ---hHhHHhhCCeEEEeccchH--------------HHHHHhhHHHHhcccHHHHHHHHHhhcCc
Confidence 0112235566777776665 66666666666668788899999985443
No 64
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=96.32 E-value=0.032 Score=41.37 Aligned_cols=116 Identities=18% Similarity=0.228 Sum_probs=51.3
Q ss_pred hhcccceecHHHHHHHhhcCCeEEEecCChhhhhhc---CCCCcE--EechhhHHhhh--------h-HHHHHHHhhhhh
Q 030946 15 YLLQVRSVEAKEALRLQKENNFVILDVRPEAEFKEA---HPPGAI--NVQIYRLIKEW--------T-AWDIARRAAFAF 80 (168)
Q Consensus 15 ~~~~~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~g---hIpgAi--~ip~~~l~~~~--------~-~~~~~~~~~~~~ 80 (168)
-+..+..+|+++...+.+-+=..|||.|++.|.... .++|.. |+|+..-.... . ...........+
T Consensus 23 RS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 102 (164)
T PF13350_consen 23 RSGNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADAPRGMLEFY 102 (164)
T ss_dssp EES--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHHHHHHHHHH
T ss_pred ecCCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCceeeeecccccccccccccccccccccchhhHHHHHH
Confidence 456677899999888876656789999999998753 345544 34443221110 0 000001111111
Q ss_pred ccccCC-CCCchHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccc
Q 030946 81 FGIFSG-TEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKN 146 (168)
Q Consensus 81 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~ 146 (168)
..+... .+...++++. -.....+++++|..|++. ....++-.|..+|...
T Consensus 103 ~~~~~~~~~~~~~~~~~----l~~~~~p~l~HC~aGKDR------------TG~~~alll~~lGV~~ 153 (164)
T PF13350_consen 103 REMLESYAEAYRKIFEL----LADAPGPVLFHCTAGKDR------------TGVVAALLLSLLGVPD 153 (164)
T ss_dssp HHGGGSTHHHHHHHHHH----HH-TT--EEEE-SSSSSH------------HHHHHHHHHHHTT--H
T ss_pred HHHHHhhhHHHHHHHHH----hccCCCcEEEECCCCCcc------------HHHHHHHHHHHcCCCH
Confidence 122211 1222233322 122236999999999973 6777788888889864
No 65
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=95.58 E-value=0.095 Score=45.16 Aligned_cols=45 Identities=18% Similarity=0.371 Sum_probs=33.6
Q ss_pred ceecHHHHHHHh--hcC--CeEEEecCChhhhhhcCCCCcEEechhhHH
Q 030946 20 RSVEAKEALRLQ--KEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLI 64 (168)
Q Consensus 20 ~~i~~~~l~~~l--~~~--~~~liDvR~~~e~~~ghIpgAi~ip~~~l~ 64 (168)
-.|+.-|+.+.- +.+ +..|||+|+.++|..||+-.|.|+.-.-..
T Consensus 307 Lpisv~el~~~~~~~~~~VrFFiVDcRpaeqynaGHlstaFhlDc~lml 355 (669)
T KOG3636|consen 307 LPISVIELTSHDEISSGSVRFFIVDCRPAEQYNAGHLSTAFHLDCVLML 355 (669)
T ss_pred cchhHHHhhcccccccCceEEEEEeccchhhcccccchhhhcccHHHHh
Confidence 346666665432 222 688999999999999999999998875443
No 66
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=95.48 E-value=0.063 Score=38.70 Aligned_cols=28 Identities=14% Similarity=0.203 Sum_probs=22.2
Q ss_pred ceecHHHHHHHhhcCCeEEEecCChhhh
Q 030946 20 RSVEAKEALRLQKENNFVILDVRPEAEF 47 (168)
Q Consensus 20 ~~i~~~~l~~~l~~~~~~liDvR~~~e~ 47 (168)
..++++++..+-+.+=..|||.|+..|.
T Consensus 13 ~qlt~~d~~~L~~~GiktVIdlR~~~E~ 40 (135)
T TIGR01244 13 PQLTKADAAQAAQLGFKTVINNRPDREE 40 (135)
T ss_pred CCCCHHHHHHHHHCCCcEEEECCCCCCC
Confidence 4688888888766666789999997764
No 67
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=95.12 E-value=0.11 Score=36.39 Aligned_cols=27 Identities=15% Similarity=0.359 Sum_probs=17.6
Q ss_pred ceecHHHHHHHhhcCCeEEEecCChhh
Q 030946 20 RSVEAKEALRLQKENNFVILDVRPEAE 46 (168)
Q Consensus 20 ~~i~~~~l~~~l~~~~~~liDvR~~~e 46 (168)
..++++++.++-+.+-..||+.|+..|
T Consensus 13 ~Q~~~~d~~~la~~GfktVInlRpd~E 39 (110)
T PF04273_consen 13 GQPSPEDLAQLAAQGFKTVINLRPDGE 39 (110)
T ss_dssp CS--HHHHHHHHHCT--EEEE-S-TTS
T ss_pred CCCCHHHHHHHHHCCCcEEEECCCCCC
Confidence 368999999988887788999998755
No 68
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=94.98 E-value=0.0093 Score=49.19 Aligned_cols=50 Identities=12% Similarity=0.084 Sum_probs=40.2
Q ss_pred eecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHH
Q 030946 21 SVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDI 72 (168)
Q Consensus 21 ~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~ 72 (168)
.=+++++.+.+.. ...++|+|....|+.+||||++|+|. .-+..|.+|..
T Consensus 15 i~~~~~~~~~l~~-~~~~~d~rg~i~~a~egIngtis~~~-~~~~~~~~~l~ 64 (314)
T PRK00142 15 IEDPEAFRDEHLA-LCKSLGLKGRILVAEEGINGTVSGTI-EQTEAYMAWLK 64 (314)
T ss_pred CCCHHHHHHHHHH-HHHHcCCeeEEEEcCCCceEEEEecH-HHHHHHHHHHh
Confidence 4567888888876 57789999999999999999999999 55556655544
No 69
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=90.50 E-value=0.59 Score=38.57 Aligned_cols=35 Identities=14% Similarity=0.109 Sum_probs=30.1
Q ss_pred cceecHHHHHHHhhcCCeEEEecCChhhhhh---cCCC
Q 030946 19 VRSVEAKEALRLQKENNFVILDVRPEAEFKE---AHPP 53 (168)
Q Consensus 19 ~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~---ghIp 53 (168)
...+...++.+.+...+..|||+|+..+|.. |||+
T Consensus 135 ~tg~gKt~Ll~~L~~~~~~VvDlr~~a~hrGs~fG~~~ 172 (311)
T TIGR03167 135 MTGSGKTELLHALANAGAQVLDLEGLANHRGSSFGALG 172 (311)
T ss_pred CCCcCHHHHHHHHhcCCCeEEECCchHHhcCcccCCCC
Confidence 3568888999999877889999999999987 7888
No 70
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=83.87 E-value=1 Score=31.99 Aligned_cols=37 Identities=22% Similarity=0.206 Sum_probs=31.0
Q ss_pred EEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHc----CccceeEccccHHHH
Q 030946 108 IIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLN----GYKNVYHLEGGLYKW 157 (168)
Q Consensus 108 iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~----G~~~v~~l~GG~~~w 157 (168)
|+|+|.+..| ||..|...|+.. +-.++.+...|..+|
T Consensus 1 ILFvC~~N~c-------------RS~mAEai~~~~~~~~~~~~~~v~SAG~~~~ 41 (138)
T PF01451_consen 1 ILFVCTGNIC-------------RSPMAEAILRHLLKQRLGDRFEVESAGTEAW 41 (138)
T ss_dssp EEEEESSSSS-------------HHHHHHHHHHHHHHHTHTTTEEEEEEESSST
T ss_pred CEEEeCCCcc-------------hHHHHHHHHHHhccccccCCcEEEEEeeccc
Confidence 7899999886 999998888887 556788888888766
No 71
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=82.46 E-value=6 Score=30.67 Aligned_cols=33 Identities=33% Similarity=0.587 Sum_probs=26.6
Q ss_pred CCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeE
Q 030946 105 DAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYH 149 (168)
Q Consensus 105 ~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~ 149 (168)
..+|+++|..|+ +|+ .+.-+|+.|...|++ |.+
T Consensus 49 ~~~v~vlcG~Gn---------NGG--DG~VaAR~L~~~G~~-V~v 81 (203)
T COG0062 49 ARRVLVLCGPGN---------NGG--DGLVAARHLKAAGYA-VTV 81 (203)
T ss_pred CCEEEEEECCCC---------ccH--HHHHHHHHHHhCCCc-eEE
Confidence 678999999998 677 455699999999985 543
No 72
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=81.86 E-value=6.3 Score=27.72 Aligned_cols=31 Identities=32% Similarity=0.542 Sum_probs=21.7
Q ss_pred CCCCCeEEEEeCCCCCCCCCCCCCCCccchHHH--HHHHHHHcCcc
Q 030946 102 LDKDAKIIVACATGGTMKPSQNLPEGQQSRSLI--AAYLLVLNGYK 145 (168)
Q Consensus 102 ~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~--a~~~L~~~G~~ 145 (168)
...+++|+|+|..|.. |+.. +++.+...|++
T Consensus 75 ~~~~~~VlVHC~~G~~-------------RS~~v~~~yl~~~~~~~ 107 (138)
T smart00195 75 EKKGGKVLVHCQAGVS-------------RSATLIIAYLMKYRNLS 107 (138)
T ss_pred hcCCCeEEEECCCCCc-------------hHHHHHHHHHHHHhCCC
Confidence 4567899999999973 5543 45556666763
No 73
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=81.74 E-value=6.3 Score=27.53 Aligned_cols=14 Identities=36% Similarity=0.771 Sum_probs=11.9
Q ss_pred CCCCeEEEEeCCCC
Q 030946 103 DKDAKIIVACATGG 116 (168)
Q Consensus 103 ~~~~~iV~yc~~g~ 116 (168)
..+++|+|+|..|.
T Consensus 79 ~~~~~vlVHC~~G~ 92 (139)
T cd00127 79 EKGGKVLVHCLAGV 92 (139)
T ss_pred hcCCcEEEECCCCC
Confidence 35679999999998
No 74
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.38 E-value=13 Score=26.58 Aligned_cols=28 Identities=14% Similarity=0.144 Sum_probs=21.8
Q ss_pred ceecHHHHHHHhhcCCeEEEecCChhhh
Q 030946 20 RSVEAKEALRLQKENNFVILDVRPEAEF 47 (168)
Q Consensus 20 ~~i~~~~l~~~l~~~~~~liDvR~~~e~ 47 (168)
..++++|+.+.-..+-..||--||..|-
T Consensus 14 gQi~~~D~~~iaa~GFksiI~nRPDgEe 41 (130)
T COG3453 14 GQISPADIASIAALGFKSIICNRPDGEE 41 (130)
T ss_pred CCCCHHHHHHHHHhccceecccCCCCCC
Confidence 4688999988877767789999985553
No 75
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=77.04 E-value=3.2 Score=30.62 Aligned_cols=48 Identities=23% Similarity=0.250 Sum_probs=26.3
Q ss_pred ccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHH
Q 030946 100 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYK 156 (168)
Q Consensus 100 ~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~ 156 (168)
.+++++.++++++-.|... .| .....++..|+++|..+...|+||-..
T Consensus 95 iG~~~~g~l~l~~vdg~~~-------~g--~tl~ela~~l~~lG~~~AinLDGGgSs 142 (170)
T PF09992_consen 95 IGVTADGKLLLIVVDGRQS-------AG--MTLDELAQLLKSLGCVDAINLDGGGSS 142 (170)
T ss_dssp EEE-TTSEEEEEEE----S-----------B-HHHHHHHHHHHT-SEEEE---GGG-
T ss_pred EEEeCCCcEEEEEEcCCcC-------CC--CCHHHHHHHHHHcCcCeEEEecCCcce
Confidence 3445666777776553100 01 267788999999999999999999765
No 76
>PLN02727 NAD kinase
Probab=76.71 E-value=14 Score=35.02 Aligned_cols=27 Identities=22% Similarity=0.187 Sum_probs=22.4
Q ss_pred ceecHHHHHHHhhcCCeEEEecCChhh
Q 030946 20 RSVEAKEALRLQKENNFVILDVRPEAE 46 (168)
Q Consensus 20 ~~i~~~~l~~~l~~~~~~liDvR~~~e 46 (168)
..++++++..+.+.+=..||+.|+..|
T Consensus 267 gQpspe~la~LA~~GfKTIINLRpd~E 293 (986)
T PLN02727 267 GQVTEEGLKWLLEKGFKTIVDLRAEIV 293 (986)
T ss_pred CCCCHHHHHHHHHCCCeEEEECCCCCc
Confidence 368999998888776778999999766
No 77
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=75.67 E-value=5 Score=30.90 Aligned_cols=37 Identities=24% Similarity=0.448 Sum_probs=27.6
Q ss_pred CCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEc
Q 030946 102 LDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHL 150 (168)
Q Consensus 102 ~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l 150 (168)
+++.++|+++|..|+ +|+ .+.-+++.|...|++ |+++
T Consensus 42 ~~~~~~v~vl~G~GN---------NGG--DGlv~AR~L~~~~v~-V~~~ 78 (205)
T TIGR00197 42 FPLAGHVIIFCGPGN---------NGG--DGFVVARHLKGFGVE-VFLL 78 (205)
T ss_pred cCCCCeEEEEECCCC---------Ccc--HHHHHHHHHHhCCCE-EEEE
Confidence 344578999999987 666 445689999887874 6665
No 78
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=75.56 E-value=5.3 Score=31.79 Aligned_cols=34 Identities=29% Similarity=0.567 Sum_probs=26.6
Q ss_pred CCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEc
Q 030946 105 DAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHL 150 (168)
Q Consensus 105 ~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l 150 (168)
.++|+++|..|+ +|+ .+.-+|+.|...||+ |.++
T Consensus 60 ~~~V~VlcG~GN---------NGG--DGlv~AR~L~~~G~~-V~v~ 93 (246)
T PLN03050 60 HPRVLLVCGPGN---------NGG--DGLVAARHLAHFGYE-VTVC 93 (246)
T ss_pred CCeEEEEECCCC---------Cch--hHHHHHHHHHHCCCe-EEEE
Confidence 368999999887 666 455699999999995 6654
No 79
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=73.91 E-value=2.3 Score=31.67 Aligned_cols=35 Identities=31% Similarity=0.604 Sum_probs=26.7
Q ss_pred CCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeE
Q 030946 103 DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYH 149 (168)
Q Consensus 103 ~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~ 149 (168)
.+..+|+++|..|+ +|. .+..+++.|...|++ |.+
T Consensus 23 ~~~~~v~il~G~Gn---------NGg--Dgl~~AR~L~~~G~~-V~v 57 (169)
T PF03853_consen 23 PKGPRVLILCGPGN---------NGG--DGLVAARHLANRGYN-VTV 57 (169)
T ss_dssp CTT-EEEEEE-SSH---------HHH--HHHHHHHHHHHTTCE-EEE
T ss_pred cCCCeEEEEECCCC---------ChH--HHHHHHHHHHHCCCe-EEE
Confidence 67889999999987 555 455699999999996 665
No 80
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=71.41 E-value=6.6 Score=27.64 Aligned_cols=36 Identities=25% Similarity=0.342 Sum_probs=26.9
Q ss_pred CeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccH
Q 030946 106 AKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGL 154 (168)
Q Consensus 106 ~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~ 154 (168)
++|+|+|....| ||..|...|+.++-.++.+...|.
T Consensus 1 ~~vlfvC~~N~c-------------RS~mAEa~~~~~~~~~~~v~SAG~ 36 (126)
T TIGR02689 1 KKVMFVCKRNSC-------------RSQMAEGFAKTLGAGNIAVTSAGL 36 (126)
T ss_pred CeEEEEcCCcHH-------------HHHHHHHHHHHhcCCCEEEEcCcC
Confidence 368999988875 888888888887645566665554
No 81
>PRK10126 tyrosine phosphatase; Provisional
Probab=71.34 E-value=5.2 Score=29.01 Aligned_cols=38 Identities=26% Similarity=0.192 Sum_probs=28.3
Q ss_pred CeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHH
Q 030946 106 AKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKW 157 (168)
Q Consensus 106 ~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w 157 (168)
.+|+|+|.+..| ||..|...|+..+- .+.+...|...|
T Consensus 3 ~~iLFVC~gN~c-------------RSpmAEa~~~~~~~-~~~v~SAG~~~~ 40 (147)
T PRK10126 3 NNILVVCVGNIC-------------RSPTAERLLQRYHP-ELKVESAGLGAL 40 (147)
T ss_pred CeEEEEcCCcHh-------------HHHHHHHHHHHhcC-CeEEEeeeccCC
Confidence 579999999886 89888888888663 355555666444
No 82
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=70.04 E-value=6.2 Score=28.58 Aligned_cols=38 Identities=26% Similarity=0.205 Sum_probs=28.2
Q ss_pred CeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHH
Q 030946 106 AKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKW 157 (168)
Q Consensus 106 ~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w 157 (168)
++|+|+|.+..| ||..+...|+...- ++.+...|..+|
T Consensus 3 ~~ILfVC~gN~c-------------RSpmAEa~~~~~~~-~~~v~SaG~~~~ 40 (144)
T PRK11391 3 NSILVVCTGNIC-------------RSPIGERLLRKRLP-GVKVKSAGVHGL 40 (144)
T ss_pred CeEEEEcCCcHh-------------HHHHHHHHHHHhcC-CeEEEcccccCC
Confidence 579999999886 88888888887652 355666666554
No 83
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=69.21 E-value=6.2 Score=34.41 Aligned_cols=33 Identities=30% Similarity=0.498 Sum_probs=26.5
Q ss_pred CeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEc
Q 030946 106 AKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHL 150 (168)
Q Consensus 106 ~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l 150 (168)
++|+|+|+.|+ +|++. .-+|+.|...||+ |.++
T Consensus 60 ~~VlVlcG~GN---------NGGDG--lv~AR~L~~~G~~-V~v~ 92 (462)
T PLN03049 60 RRVLALCGPGN---------NGGDG--LVAARHLHHFGYK-PSIC 92 (462)
T ss_pred CEEEEEECCCC---------CHHHH--HHHHHHHHHCCCc-eEEE
Confidence 68999999998 77744 4599999999996 5544
No 84
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=69.08 E-value=5.8 Score=35.30 Aligned_cols=33 Identities=27% Similarity=0.529 Sum_probs=26.5
Q ss_pred CeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEc
Q 030946 106 AKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHL 150 (168)
Q Consensus 106 ~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l 150 (168)
++|+|+|+.|+ +|++.- -+|+.|...||+ |.++
T Consensus 136 ~~VlVlcGpGN---------NGGDGL--VaAR~L~~~G~~-V~V~ 168 (544)
T PLN02918 136 SRVLAICGPGN---------NGGDGL--VAARHLHHFGYK-PFVC 168 (544)
T ss_pred CEEEEEECCCc---------CHHHHH--HHHHHHHHCCCc-eEEE
Confidence 68999999998 777444 589999999996 5554
No 85
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=68.37 E-value=5.2 Score=28.45 Aligned_cols=37 Identities=24% Similarity=0.231 Sum_probs=26.6
Q ss_pred EEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHH
Q 030946 108 IIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKW 157 (168)
Q Consensus 108 iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w 157 (168)
|+|+|.+..| ||..+...|+...-.++.+..-|..+|
T Consensus 1 vLFVC~~N~c-------------RSpmAEa~~~~~~~~~~~v~SAG~~~~ 37 (140)
T smart00226 1 ILFVCTGNIC-------------RSPMAEALFKAIVGDRVKIDSAGTGAW 37 (140)
T ss_pred CEEEeCChhh-------------hHHHHHHHHHHhcCCCEEEEcCcccCC
Confidence 5788888775 888888888776533566666676644
No 86
>PRK10565 putative carbohydrate kinase; Provisional
Probab=66.97 E-value=7.7 Score=34.18 Aligned_cols=37 Identities=24% Similarity=0.387 Sum_probs=28.0
Q ss_pred CCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEc
Q 030946 102 LDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHL 150 (168)
Q Consensus 102 ~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l 150 (168)
+++.++|+++|..|+ +|++. .-+++.|...||+ |.++
T Consensus 57 ~~~~~~v~vl~G~GN---------NGGDG--~v~AR~L~~~G~~-V~v~ 93 (508)
T PRK10565 57 YPDARHWLVLCGHGN---------NGGDG--YVVARLAQAAGID-VTLL 93 (508)
T ss_pred cCCCCeEEEEEcCCC---------chHHH--HHHHHHHHHCCCc-eEEE
Confidence 344568999999987 67744 5699999999995 5544
No 87
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=65.40 E-value=6.4 Score=27.52 Aligned_cols=20 Identities=35% Similarity=0.356 Sum_probs=14.4
Q ss_pred HHHHHHHhhcC-CeEEEecCC
Q 030946 24 AKEALRLQKEN-NFVILDVRP 43 (168)
Q Consensus 24 ~~~l~~~l~~~-~~~liDvR~ 43 (168)
.+++.+.++.. -.+|||||.
T Consensus 2 ~e~f~~~l~~~~i~~lVDVR~ 22 (122)
T PF04343_consen 2 IERFYDLLKKNGIRVLVDVRL 22 (122)
T ss_pred HHHHHHHHHHCCCeEEEEECC
Confidence 46677777654 458999995
No 88
>PRK13530 arsenate reductase; Provisional
Probab=64.69 E-value=13 Score=26.42 Aligned_cols=37 Identities=16% Similarity=0.066 Sum_probs=27.2
Q ss_pred CCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccH
Q 030946 105 DAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGL 154 (168)
Q Consensus 105 ~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~ 154 (168)
.++|+|+|.+..| ||..+..+++...-.++.+...|.
T Consensus 3 ~~~vLFvC~~N~c-------------RS~mAEal~~~~~~~~~~v~SAG~ 39 (133)
T PRK13530 3 KKTIYFLCTGNSC-------------RSQMAEGWGKQYLGDKWNVYSAGI 39 (133)
T ss_pred CCEEEEEcCCchh-------------HHHHHHHHHHHhcCCCEEEECCCC
Confidence 3589999999886 888888888765434566666665
No 89
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=64.05 E-value=9.7 Score=27.11 Aligned_cols=38 Identities=21% Similarity=0.311 Sum_probs=29.0
Q ss_pred eEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCcc-ceeEccccHHHH
Q 030946 107 KIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYK-NVYHLEGGLYKW 157 (168)
Q Consensus 107 ~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~-~v~~l~GG~~~w 157 (168)
+|+|+|.+..| ||..+...|+...-+ ++.+...|...+
T Consensus 2 ~iLfvc~~N~~-------------RS~mAEai~~~~~~~~~~~v~SaG~~~~ 40 (141)
T cd00115 2 KVLFVCTGNIC-------------RSPMAEAIFRHLAPKLDIEVDSAGTSGW 40 (141)
T ss_pred eEEEEecChhh-------------hhHHHHHHHHHHhhhCCEEEECCCCCCc
Confidence 68999998885 888888888876543 677777776543
No 90
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=62.55 E-value=4.9 Score=33.50 Aligned_cols=38 Identities=13% Similarity=0.030 Sum_probs=30.7
Q ss_pred cccceecHHHHHHHhh------cCCeEEEecCChhhhhhcCCCCc
Q 030946 17 LQVRSVEAKEALRLQK------ENNFVILDVRPEAEFKEAHPPGA 55 (168)
Q Consensus 17 ~~~~~i~~~~l~~~l~------~~~~~liDvR~~~e~~~ghIpgA 55 (168)
.....++++++.+.++ ..+..+||+|.+. |...++|+-
T Consensus 274 ~~~~~i~~~~~~~~l~~~~~~~~~~~~ll~vr~~~-~~~~~~~~g 317 (339)
T PRK07688 274 PHKEEYDLEELAELLRDRGLDVNVNPYLLSFSLEE-KRLVLFKDG 317 (339)
T ss_pred CCcCccCHHHHHHHHHhcccccCCCcEEEEEecCC-eEEEEEcCC
Confidence 3457899999998883 2378999999988 998888864
No 91
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=62.14 E-value=13 Score=26.87 Aligned_cols=38 Identities=26% Similarity=0.183 Sum_probs=29.0
Q ss_pred CeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHH
Q 030946 106 AKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYK 156 (168)
Q Consensus 106 ~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~ 156 (168)
.+|+|+|.+..| ||..|-..++...-.++.+...|..+
T Consensus 3 ~kVLFVC~gN~c-------------RSpmAE~l~~~~~~~~~~v~SAGt~~ 40 (139)
T COG0394 3 MKVLFVCTGNIC-------------RSPMAEALLRHLAPDNVEVDSAGTGG 40 (139)
T ss_pred ceEEEEcCCCcc-------------cCHHHHHHHHHhccCCeEEECCccCC
Confidence 579999999987 88777777777644677887777543
No 92
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=62.07 E-value=8.2 Score=28.56 Aligned_cols=47 Identities=17% Similarity=0.157 Sum_probs=33.1
Q ss_pred hccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHH---cCccceeEccccHHHH
Q 030946 99 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL---NGYKNVYHLEGGLYKW 157 (168)
Q Consensus 99 ~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~---~G~~~v~~l~GG~~~w 157 (168)
+..+++++.+|+.+..|..+ .|...|..|.. .|..++.++.||-.++
T Consensus 61 l~~i~~~~~~i~Ld~~Gk~~------------sS~~fA~~l~~~~~~g~~~i~F~IGG~~G~ 110 (155)
T PF02590_consen 61 LKKIPPNDYVILLDERGKQL------------SSEEFAKKLERWMNQGKSDIVFIIGGADGL 110 (155)
T ss_dssp HCTSHTTSEEEEE-TTSEE--------------HHHHHHHHHHHHHTTS-EEEEEE-BTTB-
T ss_pred HhhccCCCEEEEEcCCCccC------------ChHHHHHHHHHHHhcCCceEEEEEecCCCC
Confidence 34567889999999998854 78888888877 6887899999987554
No 93
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=59.03 E-value=15 Score=27.19 Aligned_cols=46 Identities=26% Similarity=0.195 Sum_probs=35.5
Q ss_pred ccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHc---CccceeEccccHHHH
Q 030946 100 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLN---GYKNVYHLEGGLYKW 157 (168)
Q Consensus 100 ~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~---G~~~v~~l~GG~~~w 157 (168)
..+++++.+|+.|..|..+ .|...|..|... |..++.++.||-.++
T Consensus 62 ~~l~~~~~~i~LDe~Gk~~------------sS~~fA~~l~~~~~~g~~~i~F~IGGa~G~ 110 (157)
T PRK00103 62 AALPKGARVIALDERGKQL------------SSEEFAQELERWRDDGRSDVAFVIGGADGL 110 (157)
T ss_pred hhCCCCCEEEEEcCCCCcC------------CHHHHHHHHHHHHhcCCccEEEEEcCcccc
Confidence 3467778899999999864 788888888764 555799999987655
No 94
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=56.12 E-value=23 Score=26.66 Aligned_cols=31 Identities=35% Similarity=0.573 Sum_probs=18.9
Q ss_pred ccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHH-HHHHHHHcC
Q 030946 100 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLI-AAYLLVLNG 143 (168)
Q Consensus 100 ~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~-a~~~L~~~G 143 (168)
..+..+++|+++|.+|- .|+-. +|..|..+|
T Consensus 128 ~~L~~g~~V~vHC~GGl-------------GRtGlvAAcLLl~L~ 159 (168)
T PF05706_consen 128 ARLENGRKVLVHCRGGL-------------GRTGLVAACLLLELG 159 (168)
T ss_dssp HHHHTT--EEEE-SSSS-------------SHHHHHHHHHHHHH-
T ss_pred HHHHcCCEEEEECCCCC-------------CHHHHHHHHHHHHHc
Confidence 33567889999999997 36544 666676666
No 95
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin). This family describes the well-studied thioredoxin-dependent arsenate reductase of Staphylococcus aureaus plasmid pI258 and other mechanistically similar arsenate reductases. The mechanism involves an intramolecular disulfide bond cascade, and aligned members of this family have four absolutely conserved Cys residues. This group of arsenate reductases belongs to the low-molecular weight protein-tyrosine phosphatase family (pfam01451), as does a group of glutathione/glutaredoxin type arsenate reductases (TIGR02689). At least two other, non-homologous groups of arsenate reductases involved in arsenical resistance are also known. This enzyme reduces arsenate to arsenite, which may be more toxic but which is more easily exported.
Probab=50.99 E-value=17 Score=25.69 Aligned_cols=34 Identities=18% Similarity=0.053 Sum_probs=22.6
Q ss_pred EEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccH
Q 030946 108 IIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGL 154 (168)
Q Consensus 108 iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~ 154 (168)
|+|+|.+..| ||..+..+++...-.++.+...|.
T Consensus 1 iLFvC~~N~~-------------RS~mAea~~~~~~~~~~~v~SaG~ 34 (129)
T TIGR02691 1 IYFLCTGNSC-------------RSQMAEGWGKKYLGDEWEVYSAGI 34 (129)
T ss_pred CEEEcCCchH-------------HHHHHHHHHHHhcCCCEEEEcCCC
Confidence 5778877774 777777777765324566666665
No 96
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.57 E-value=13 Score=26.59 Aligned_cols=53 Identities=17% Similarity=0.092 Sum_probs=29.3
Q ss_pred CCCCCeEEEE------eCCCCCCCCCCCCCCCccchHHHHHHHHHHcCc--cceeEccccHHHHHhc
Q 030946 102 LDKDAKIIVA------CATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGY--KNVYHLEGGLYKWFKE 160 (168)
Q Consensus 102 ~~~~~~iV~y------c~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~--~~v~~l~GG~~~w~~~ 160 (168)
+.++++|++| ..+|..|||.|-. .-.-....|+.++- .=|+++.|....|+.-
T Consensus 22 ~~n~~~ifvlF~gskd~~tGqSWCPdCV~------AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p 82 (128)
T KOG3425|consen 22 VENGKTIFVLFLGSKDDTTGQSWCPDCVA------AEPVINEALKHAPEDVHFVHVYVGNRPYWKDP 82 (128)
T ss_pred HhCCceEEEEEecccCCCCCCcCCchHHH------hhHHHHHHHHhCCCceEEEEEEecCCCcccCC
Confidence 4455555555 4457789994321 11112344444442 2256778988889764
No 97
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=50.06 E-value=43 Score=28.08 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=25.8
Q ss_pred ecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEe
Q 030946 22 VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINV 58 (168)
Q Consensus 22 i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~i 58 (168)
....++...+...+..+||+|+..+|. |+.-|.+..
T Consensus 152 sGKT~iL~~L~~~~~~vlDlE~~aehr-GS~fG~~~~ 187 (345)
T PRK11784 152 SGKTELLQALANAGAQVLDLEGLANHR-GSSFGRLGG 187 (345)
T ss_pred ccHHHHHHHHHhcCCeEEECCchhhhc-cccccCCCC
Confidence 445667777776678899999999995 444454444
No 98
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=47.60 E-value=40 Score=22.01 Aligned_cols=32 Identities=13% Similarity=0.001 Sum_probs=23.0
Q ss_pred CCCeEEEEeCC--CCCCCCCCCCCCCccchHHHHHHHHHHcCcc
Q 030946 104 KDAKIIVACAT--GGTMKPSQNLPEGQQSRSLIAAYLLVLNGYK 145 (168)
Q Consensus 104 ~~~~iV~yc~~--g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~ 145 (168)
++.+||+|..+ +..+|| .+.++-..|...|.+
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp----------~C~~ak~~L~~~~i~ 39 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCG----------FSRKVVQILNQLGVD 39 (90)
T ss_pred ccCCEEEEEcCCCCCCCCc----------HHHHHHHHHHHcCCC
Confidence 44688888764 334566 788888888888864
No 99
>PRK12361 hypothetical protein; Provisional
Probab=44.44 E-value=28 Score=30.81 Aligned_cols=16 Identities=25% Similarity=0.603 Sum_probs=12.9
Q ss_pred CCCCCeEEEEeCCCCC
Q 030946 102 LDKDAKIIVACATGGT 117 (168)
Q Consensus 102 ~~~~~~iV~yc~~g~~ 117 (168)
...+++|+|+|..|..
T Consensus 172 ~~~~~~VlVHC~~G~s 187 (547)
T PRK12361 172 VRANKSVVVHCALGRG 187 (547)
T ss_pred HHCCCeEEEECCCCCC
Confidence 4456889999999983
No 100
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=44.35 E-value=43 Score=23.91 Aligned_cols=49 Identities=12% Similarity=0.112 Sum_probs=32.2
Q ss_pred CCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEcccc------HHHHHhcC
Q 030946 103 DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGG------LYKWFKEE 161 (168)
Q Consensus 103 ~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG------~~~w~~~g 161 (168)
..+..+|++|..-.. ...........|++.|..++.++.|| +..|++.|
T Consensus 51 e~~adii~iSsl~~~----------~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~G 105 (132)
T TIGR00640 51 EADVHVVGVSSLAGG----------HLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMG 105 (132)
T ss_pred HcCCCEEEEcCchhh----------hHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCC
Confidence 456678888886531 01234556777888898778888887 34455555
No 101
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=44.23 E-value=28 Score=26.08 Aligned_cols=16 Identities=38% Similarity=0.657 Sum_probs=13.3
Q ss_pred cCCCCCeEEEEeCCCC
Q 030946 101 QLDKDAKIIVACATGG 116 (168)
Q Consensus 101 ~~~~~~~iV~yc~~g~ 116 (168)
...+.++||+.|..|.
T Consensus 101 ~~~~g~kVvVHC~~Gi 116 (180)
T COG2453 101 ALSKGKKVVVHCQGGI 116 (180)
T ss_pred HHhcCCeEEEEcCCCC
Confidence 4556679999999998
No 102
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=44.15 E-value=40 Score=23.40 Aligned_cols=48 Identities=17% Similarity=0.081 Sum_probs=30.3
Q ss_pred CCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEcccc------HHHHHhcC
Q 030946 104 KDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGG------LYKWFKEE 161 (168)
Q Consensus 104 ~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG------~~~w~~~g 161 (168)
.+..+|++|...... ..........|++.|+.++.++.|| +..|.+.|
T Consensus 49 ~~~d~V~iS~~~~~~----------~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G 102 (122)
T cd02071 49 EDVDVIGLSSLSGGH----------MTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMG 102 (122)
T ss_pred cCCCEEEEcccchhh----------HHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCC
Confidence 345677777764311 1233456777888898888888886 23455666
No 103
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=43.88 E-value=36 Score=24.89 Aligned_cols=44 Identities=18% Similarity=0.288 Sum_probs=32.7
Q ss_pred cCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccH
Q 030946 101 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGL 154 (168)
Q Consensus 101 ~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~ 154 (168)
.+..+-.+|..|.... +-..........|++.|.+.+.++.||.
T Consensus 59 A~~~dv~vIgvSsl~g----------~h~~l~~~lve~lre~G~~~i~v~~GGv 102 (143)
T COG2185 59 AVEEDVDVIGVSSLDG----------GHLTLVPGLVEALREAGVEDILVVVGGV 102 (143)
T ss_pred HHhcCCCEEEEEeccc----------hHHHHHHHHHHHHHHhCCcceEEeecCc
Confidence 3667778888888754 1123456678889999999999888885
No 104
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=43.59 E-value=61 Score=24.06 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=36.4
Q ss_pred hccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHH---cCccceeEccccHHHH
Q 030946 99 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL---NGYKNVYHLEGGLYKW 157 (168)
Q Consensus 99 ~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~---~G~~~v~~l~GG~~~w 157 (168)
...++++..+|..+-.|..| .|...|..|.. .| .++.++-||-.+.
T Consensus 61 l~~i~~~~~vi~Ld~~Gk~~------------sSe~fA~~l~~~~~~G-~~i~f~IGG~~Gl 109 (155)
T COG1576 61 LAAIPKGSYVVLLDIRGKAL------------SSEEFADFLERLRDDG-RDISFLIGGADGL 109 (155)
T ss_pred HHhcCCCCeEEEEecCCCcC------------ChHHHHHHHHHHHhcC-CeEEEEEeCcccC
Confidence 34578888999999999875 78888888864 57 7799999997643
No 105
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.45 E-value=54 Score=24.83 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=31.7
Q ss_pred hhhhhHhhhhhhhhcccceecHHHHHHHhhcCCeEEEecCChhhh
Q 030946 3 KLSLWIKSVEVFYLLQVRSVEAKEALRLQKENNFVILDVRPEAEF 47 (168)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~liDvR~~~e~ 47 (168)
-|+.|-.++ ++..++++..-++..|. -.+|.|+.+...|
T Consensus 68 hLQlWDTAG----QERFRSLTTAFfRDAMG--FlLiFDlT~eqSF 106 (219)
T KOG0081|consen 68 HLQLWDTAG----QERFRSLTTAFFRDAMG--FLLIFDLTSEQSF 106 (219)
T ss_pred EEeeecccc----HHHHHHHHHHHHHhhcc--ceEEEeccchHHH
Confidence 467888888 66788899998888883 5889999987766
No 106
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=42.72 E-value=37 Score=24.01 Aligned_cols=36 Identities=22% Similarity=0.208 Sum_probs=28.0
Q ss_pred CCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccH
Q 030946 104 KDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGL 154 (168)
Q Consensus 104 ~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~ 154 (168)
++++++++..+| .+..++..|...|+++++++.--.
T Consensus 11 ~~~~vlviGaGg---------------~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGG---------------AARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSH---------------HHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECCHH---------------HHHHHHHHHHHcCCCEEEEEECCH
Confidence 567888887765 577799999999999888876443
No 107
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=41.81 E-value=65 Score=21.50 Aligned_cols=36 Identities=28% Similarity=0.276 Sum_probs=28.8
Q ss_pred CCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccH
Q 030946 104 KDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGL 154 (168)
Q Consensus 104 ~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~ 154 (168)
++.++++||..-. .+..++..|.+.+. ++..+.|+.
T Consensus 27 ~~~~~lvf~~~~~--------------~~~~~~~~l~~~~~-~~~~~~~~~ 62 (131)
T cd00079 27 KGGKVLIFCPSKK--------------MLDELAELLRKPGI-KVAALHGDG 62 (131)
T ss_pred CCCcEEEEeCcHH--------------HHHHHHHHHHhcCC-cEEEEECCC
Confidence 5678999999876 78888899988776 477888775
No 108
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=40.70 E-value=40 Score=27.16 Aligned_cols=52 Identities=15% Similarity=0.169 Sum_probs=38.8
Q ss_pred ccCCCCCchHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeE
Q 030946 83 IFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYH 149 (168)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~ 149 (168)
++.++.+--+.++. ....+.++..+++||.+-. ...++...|++.|+.++..
T Consensus 167 v~LDmp~PW~~le~-~~~~Lkpgg~~~~y~P~ve--------------Qv~kt~~~l~~~g~~~ie~ 218 (256)
T COG2519 167 VFLDLPDPWNVLEH-VSDALKPGGVVVVYSPTVE--------------QVEKTVEALRERGFVDIEA 218 (256)
T ss_pred EEEcCCChHHHHHH-HHHHhCCCcEEEEEcCCHH--------------HHHHHHHHHHhcCccchhh
Confidence 34455555566665 4455778899999999976 8889999999999976553
No 109
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=39.99 E-value=41 Score=24.81 Aligned_cols=43 Identities=21% Similarity=0.212 Sum_probs=32.5
Q ss_pred cCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHH---cCccceeEccccHHHH
Q 030946 101 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL---NGYKNVYHLEGGLYKW 157 (168)
Q Consensus 101 ~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~---~G~~~v~~l~GG~~~w 157 (168)
.++ ++.+|+.|..|..+ .|...|..|.. .| .++.++-||-.++
T Consensus 62 ~~~-~~~~i~LDe~Gk~~------------sS~~fA~~l~~~~~~g-~~i~FvIGGa~G~ 107 (153)
T TIGR00246 62 AIG-KAHVVTLDIPGKPW------------TTPQLADTLEKWKTDG-RDVTLLIGGPEGL 107 (153)
T ss_pred hCC-CCeEEEEcCCCCcC------------CHHHHHHHHHHHhccC-CeEEEEEcCCCcC
Confidence 344 47889999998864 78888888874 56 4799999987554
No 110
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=39.89 E-value=55 Score=29.41 Aligned_cols=37 Identities=32% Similarity=0.333 Sum_probs=30.8
Q ss_pred CCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHH
Q 030946 104 KDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY 155 (168)
Q Consensus 104 ~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~ 155 (168)
-+.+|++|.+.-. .+...|..|.++|| +++.|.||-.
T Consensus 516 ~~ppiIIFvN~kk--------------~~d~lAk~LeK~g~-~~~tlHg~k~ 552 (673)
T KOG0333|consen 516 FDPPIIIFVNTKK--------------GADALAKILEKAGY-KVTTLHGGKS 552 (673)
T ss_pred CCCCEEEEEechh--------------hHHHHHHHHhhccc-eEEEeeCCcc
Confidence 4667888888876 67889999999999 4999999853
No 111
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=38.89 E-value=47 Score=21.29 Aligned_cols=10 Identities=50% Similarity=0.969 Sum_probs=8.8
Q ss_pred eEEEEeCCCC
Q 030946 107 KIIVACATGG 116 (168)
Q Consensus 107 ~iV~yc~~g~ 116 (168)
+|++.|.+|-
T Consensus 1 kIlvvC~~Gi 10 (90)
T PF02302_consen 1 KILVVCGSGI 10 (90)
T ss_dssp EEEEEESSSS
T ss_pred CEEEECCChH
Confidence 5899999997
No 112
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=37.85 E-value=75 Score=23.50 Aligned_cols=15 Identities=27% Similarity=0.377 Sum_probs=13.0
Q ss_pred CCCCCeEEEEeCCCC
Q 030946 102 LDKDAKIIVACATGG 116 (168)
Q Consensus 102 ~~~~~~iV~yc~~g~ 116 (168)
..++.+|+|+|..|.
T Consensus 95 ~~~g~~V~VHC~aGi 109 (166)
T PTZ00242 95 STPPETIAVHCVAGL 109 (166)
T ss_pred ccCCCeEEEECCCCC
Confidence 456889999999998
No 113
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=37.39 E-value=52 Score=21.33 Aligned_cols=11 Identities=45% Similarity=0.827 Sum_probs=9.4
Q ss_pred CeEEEEeCCCC
Q 030946 106 AKIIVACATGG 116 (168)
Q Consensus 106 ~~iV~yc~~g~ 116 (168)
++|+++|++|.
T Consensus 1 ~kilvvCg~G~ 11 (87)
T cd05567 1 KKIVFACDAGM 11 (87)
T ss_pred CEEEEECCCCc
Confidence 36899999987
No 114
>PF10903 DUF2691: Protein of unknown function (DUF2691); InterPro: IPR020216 This entry represents a group of uncharacterised proteins.
Probab=36.41 E-value=86 Score=23.24 Aligned_cols=92 Identities=18% Similarity=0.282 Sum_probs=57.7
Q ss_pred hhhhhcccceecHHHHHHHhhcCCe--EEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCC
Q 030946 12 EVFYLLQVRSVEAKEALRLQKENNF--VILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEE 89 (168)
Q Consensus 12 ~~~~~~~~~~i~~~~l~~~l~~~~~--~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (168)
+.+.......++-.++.+.++..+. +++|.+. |..+..+..|+- +
T Consensus 47 ~~lF~~~~~~~~G~~lk~~l~~~~YYlIF~dLkA---fp~~~~~~~I~t-y----------------------------- 93 (153)
T PF10903_consen 47 EELFPEDEEIMTGSELKKLLKDNDYYLIFLDLKA---FPKGETVTEINT-Y----------------------------- 93 (153)
T ss_pred hhhcCCCceeeehHHHHHHhhcCCeEEEEEEeee---CcCCCCcccccc-H-----------------------------
Confidence 3455566778999999999987653 5566642 333332333222 1
Q ss_pred chHHHHhh--hhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEcc
Q 030946 90 NPEFLQTG--VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLE 151 (168)
Q Consensus 90 ~~~~~~~~--~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~ 151 (168)
++|++.- ...-+-...-|-+||-... .-....+.....||.|+..+.
T Consensus 94 -eeFl~S~CelvllIvD~~yv~IycKd~~--------------~i~~lyqna~~~gy~~i~yIT 142 (153)
T PF10903_consen 94 -EEFLNSKCELVLLIVDSSYVSIYCKDQE--------------IIESLYQNAQNQGYENIEYIT 142 (153)
T ss_pred -HHHhcCCceEEEEEEeccEEEEEEcCHH--------------HHHHHHHHHHHCCceEEEEEe
Confidence 1222210 1122345567889999876 677788899999999998765
No 115
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=35.61 E-value=52 Score=26.95 Aligned_cols=40 Identities=20% Similarity=0.137 Sum_probs=32.4
Q ss_pred CCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCcc-ceeEccccHH
Q 030946 102 LDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYK-NVYHLEGGLY 155 (168)
Q Consensus 102 ~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~-~v~~l~GG~~ 155 (168)
..++.++++||++-. .+..++..|++.+.. ++..+.|++.
T Consensus 219 ~~~~~~~lVf~~t~~--------------~~~~~~~~L~~~~~~~~~~~~h~~~~ 259 (358)
T TIGR01587 219 IKKGGKIAIIVNTVD--------------RAQEFYQQLKENAPEEEIMLLHSRFT 259 (358)
T ss_pred hhCCCeEEEEECCHH--------------HHHHHHHHHHhhcCCCeEEEEECCCC
Confidence 345688999999976 888899999998874 6888888863
No 116
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=35.48 E-value=38 Score=29.27 Aligned_cols=38 Identities=21% Similarity=0.114 Sum_probs=31.3
Q ss_pred CCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHH
Q 030946 103 DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY 155 (168)
Q Consensus 103 ~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~ 155 (168)
.+++..++||++-. .+..++..|...|+. +..+.||+.
T Consensus 224 ~~~~~~IIF~~s~~--------------~~e~la~~L~~~g~~-~~~~H~~l~ 261 (470)
T TIGR00614 224 FKGKSGIIYCPSRK--------------KSEQVTASLQNLGIA-AGAYHAGLE 261 (470)
T ss_pred cCCCceEEEECcHH--------------HHHHHHHHHHhcCCC-eeEeeCCCC
Confidence 35567799999986 889999999999985 788888864
No 117
>PTZ00110 helicase; Provisional
Probab=34.85 E-value=71 Score=28.35 Aligned_cols=37 Identities=19% Similarity=0.234 Sum_probs=31.0
Q ss_pred CCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHH
Q 030946 104 KDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY 155 (168)
Q Consensus 104 ~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~ 155 (168)
...++||||++-. .+..++..|...|+. +..+.|++.
T Consensus 376 ~~~k~LIF~~t~~--------------~a~~l~~~L~~~g~~-~~~ihg~~~ 412 (545)
T PTZ00110 376 DGDKILIFVETKK--------------GADFLTKELRLDGWP-ALCIHGDKK 412 (545)
T ss_pred cCCeEEEEecChH--------------HHHHHHHHHHHcCCc-EEEEECCCc
Confidence 5678999999987 888999999999985 677778763
No 118
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=34.70 E-value=1e+02 Score=24.42 Aligned_cols=46 Identities=20% Similarity=0.251 Sum_probs=27.4
Q ss_pred hHHHHhhhhccCC---CCCeEEEEeCCCCCCCCCCCCCCCccchHHHHH----HHHHHcCccceeEc
Q 030946 91 PEFLQTGVESQLD---KDAKIIVACATGGTMKPSQNLPEGQQSRSLIAA----YLLVLNGYKNVYHL 150 (168)
Q Consensus 91 ~~~~~~~~~~~~~---~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~----~~L~~~G~~~v~~l 150 (168)
..+++. ....++ ++..+|++|.+.. +.+..++ ..|...||++|++.
T Consensus 121 e~~v~a-ik~~~ppl~k~e~~vlmgHGt~-------------h~s~~~YacLd~~~~~~~f~~v~v~ 173 (265)
T COG4822 121 EICVEA-IKDQIPPLNKDEILVLMGHGTD-------------HHSNAAYACLDHVLDEYGFDNVFVA 173 (265)
T ss_pred HHHHHH-HHHhcCCcCcCeEEEEEecCCC-------------ccHHHHHHHHHHHHHhcCCCceEEE
Confidence 344444 344454 7788999998865 2332222 34466788887753
No 119
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=34.69 E-value=43 Score=26.72 Aligned_cols=31 Identities=23% Similarity=0.502 Sum_probs=22.0
Q ss_pred CCCCCeEEEEeCCCCCCCCCCCCCCCccchH-HHHHHHHHHcCcc
Q 030946 102 LDKDAKIIVACATGGTMKPSQNLPEGQQSRS-LIAAYLLVLNGYK 145 (168)
Q Consensus 102 ~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs-~~a~~~L~~~G~~ 145 (168)
+..+..|+|.|..|.. |+ ..++..|.+.|++
T Consensus 167 l~~g~~VaVHC~AGlG-------------RTGtl~AayLI~~Gms 198 (241)
T PTZ00393 167 IKNNRAVAVHCVAGLG-------------RAPVLASIVLIEFGMD 198 (241)
T ss_pred HhcCCeEEEECCCCCC-------------HHHHHHHHHHHHcCCC
Confidence 3567899999999983 44 4456667677764
No 120
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=34.59 E-value=84 Score=25.29 Aligned_cols=36 Identities=17% Similarity=0.139 Sum_probs=25.4
Q ss_pred cCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEcc
Q 030946 101 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLE 151 (168)
Q Consensus 101 ~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~ 151 (168)
+...+++++++..+| .+..++..|.+.|..+++++.
T Consensus 118 ~~~~~~~vlilGaGG---------------aarAi~~aL~~~g~~~i~i~n 153 (272)
T PRK12550 118 QVPPDLVVALRGSGG---------------MAKAVAAALRDAGFTDGTIVA 153 (272)
T ss_pred CCCCCCeEEEECCcH---------------HHHHHHHHHHHCCCCEEEEEe
Confidence 344445677776655 466688889999998888764
No 121
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=34.48 E-value=65 Score=28.19 Aligned_cols=39 Identities=18% Similarity=0.078 Sum_probs=30.5
Q ss_pred CCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccc
Q 030946 103 DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEG 152 (168)
Q Consensus 103 ~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~G 152 (168)
-++++||+++.+-.. | ..+.+...+|+++|-++|++-.+
T Consensus 346 v~GKrVvlVDDSIVR---------G--TTsr~IV~mlReAGAkEVHvria 384 (470)
T COG0034 346 VKGKRVVLVDDSIVR---------G--TTSRRIVQMLREAGAKEVHVRIA 384 (470)
T ss_pred hCCCeEEEEcccccc---------C--ccHHHHHHHHHHhCCCEEEEEec
Confidence 378999999998320 0 17889999999999999987554
No 122
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=33.85 E-value=55 Score=20.57 Aligned_cols=30 Identities=13% Similarity=0.381 Sum_probs=24.1
Q ss_pred ccceecHHHHHHHhhcC-CeEEEecCChhhh
Q 030946 18 QVRSVEAKEALRLQKEN-NFVILDVRPEAEF 47 (168)
Q Consensus 18 ~~~~i~~~~l~~~l~~~-~~~liDvR~~~e~ 47 (168)
.-.-|+.+++.+++..+ ++.++|..+-++.
T Consensus 16 ~s~YiTL~di~~lV~~g~~~~V~D~ktgeDi 46 (64)
T PF07879_consen 16 TSSYITLEDIAQLVREGEDFKVVDAKTGEDI 46 (64)
T ss_pred CceeEeHHHHHHHHHCCCeEEEEECCCCccc
Confidence 34569999999999876 7899999975543
No 123
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=33.80 E-value=53 Score=27.80 Aligned_cols=37 Identities=22% Similarity=0.104 Sum_probs=30.7
Q ss_pred CCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHH
Q 030946 104 KDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY 155 (168)
Q Consensus 104 ~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~ 155 (168)
....+++||++.. .+...+..|...|+. +..+.|++.
T Consensus 254 ~~~~~lVF~~t~~--------------~~~~l~~~L~~~g~~-v~~lhg~~~ 290 (423)
T PRK04837 254 WPDRAIIFANTKH--------------RCEEIWGHLAADGHR-VGLLTGDVA 290 (423)
T ss_pred CCCeEEEEECCHH--------------HHHHHHHHHHhCCCc-EEEecCCCC
Confidence 3467899999876 888899999999985 888888763
No 124
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=33.72 E-value=87 Score=20.82 Aligned_cols=33 Identities=15% Similarity=-0.035 Sum_probs=22.9
Q ss_pred CCCCeEEEEeCC--CCCCCCCCCCCCCccchHHHHHHHHHHcCcc
Q 030946 103 DKDAKIIVACAT--GGTMKPSQNLPEGQQSRSLIAAYLLVLNGYK 145 (168)
Q Consensus 103 ~~~~~iV~yc~~--g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~ 145 (168)
-...+||+|..+ ...+|| .+.++-..|.+.|++
T Consensus 9 i~~~~Vvvf~kg~~~~~~Cp----------~C~~ak~lL~~~~i~ 43 (97)
T TIGR00365 9 IKENPVVLYMKGTPQFPQCG----------FSARAVQILKACGVP 43 (97)
T ss_pred hccCCEEEEEccCCCCCCCc----------hHHHHHHHHHHcCCC
Confidence 345788999653 234566 677788888888874
No 125
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=33.66 E-value=44 Score=30.08 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=31.8
Q ss_pred CCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHH
Q 030946 103 DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY 155 (168)
Q Consensus 103 ~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~ 155 (168)
.++...|+||++-. .+...+..|...|+. +..+.||+.
T Consensus 234 ~~~~~~IIFc~tr~--------------~~e~la~~L~~~g~~-v~~~Ha~l~ 271 (607)
T PRK11057 234 QRGKSGIIYCNSRA--------------KVEDTAARLQSRGIS-AAAYHAGLD 271 (607)
T ss_pred cCCCCEEEEECcHH--------------HHHHHHHHHHhCCCC-EEEecCCCC
Confidence 35578899999976 888999999999985 888888874
No 126
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=33.63 E-value=87 Score=21.34 Aligned_cols=17 Identities=24% Similarity=0.577 Sum_probs=12.9
Q ss_pred ccCCCCCeEEEEeCCCC
Q 030946 100 SQLDKDAKIIVACATGG 116 (168)
Q Consensus 100 ~~~~~~~~iV~yc~~g~ 116 (168)
..+++++.|+++|.-++
T Consensus 52 ~~~~~~~~vlil~Dl~g 68 (116)
T PF03610_consen 52 EELDEGDGVLILTDLGG 68 (116)
T ss_dssp HHCCTTSEEEEEESSTT
T ss_pred HhccCCCcEEEEeeCCC
Confidence 44677888888888876
No 127
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=33.26 E-value=1.1e+02 Score=25.35 Aligned_cols=32 Identities=25% Similarity=0.210 Sum_probs=23.4
Q ss_pred HHHHHHhhcCCeEEEecCChhhhhhcCCCCcE
Q 030946 25 KEALRLQKENNFVILDVRPEAEFKEAHPPGAI 56 (168)
Q Consensus 25 ~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi 56 (168)
+++.+++..=+++|.|+-..--.-..-|||+.
T Consensus 13 ~~~~e~l~~~DtfifDcDGVlW~g~~~ipGs~ 44 (306)
T KOG2882|consen 13 EEARELLDSFDTFIFDCDGVLWLGEKPIPGSP 44 (306)
T ss_pred HHHHHHHhhcCEEEEcCCcceeecCCCCCChH
Confidence 56777787668999999876655555677764
No 128
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=32.95 E-value=62 Score=27.44 Aligned_cols=37 Identities=27% Similarity=0.176 Sum_probs=31.1
Q ss_pred CCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHH
Q 030946 104 KDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY 155 (168)
Q Consensus 104 ~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~ 155 (168)
...++++||++-. .+...+..|...|+. +..+.|++.
T Consensus 244 ~~~~~lVF~~s~~--------------~~~~l~~~L~~~~~~-~~~l~g~~~ 280 (434)
T PRK11192 244 EVTRSIVFVRTRE--------------RVHELAGWLRKAGIN-CCYLEGEMV 280 (434)
T ss_pred CCCeEEEEeCChH--------------HHHHHHHHHHhCCCC-EEEecCCCC
Confidence 4578999999976 888999999999985 888888864
No 129
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=32.85 E-value=1e+02 Score=19.84 Aligned_cols=30 Identities=23% Similarity=0.215 Sum_probs=21.8
Q ss_pred CCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccc
Q 030946 105 DAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKN 146 (168)
Q Consensus 105 ~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~ 146 (168)
+-+|.++-.++.. ..+.+++..|+..||+.
T Consensus 3 ~v~V~VlNgt~~~------------GlA~~~a~~L~~~Gf~v 32 (90)
T PF13399_consen 3 DVRVEVLNGTGVS------------GLAARVADALRNRGFTV 32 (90)
T ss_pred ceEEEEEECcCCc------------CHHHHHHHHHHHCCCce
Confidence 3456666666542 47889999999999974
No 130
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=32.20 E-value=1.3e+02 Score=18.82 Aligned_cols=31 Identities=26% Similarity=0.293 Sum_probs=24.1
Q ss_pred CCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCcc
Q 030946 102 LDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYK 145 (168)
Q Consensus 102 ~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~ 145 (168)
.....+|++|...+. | .+.++-..|.+.|++
T Consensus 4 ~~~~~~V~ly~~~~C---p----------~C~~ak~~L~~~gi~ 34 (79)
T TIGR02190 4 ARKPESVVVFTKPGC---P----------FCAKAKATLKEKGYD 34 (79)
T ss_pred cCCCCCEEEEECCCC---H----------hHHHHHHHHHHcCCC
Confidence 445678999998765 3 777888899998875
No 131
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=32.09 E-value=49 Score=28.38 Aligned_cols=37 Identities=24% Similarity=0.317 Sum_probs=30.8
Q ss_pred CCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHH
Q 030946 104 KDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY 155 (168)
Q Consensus 104 ~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~ 155 (168)
....+++||++-. .+..++..|...|+. +..+.|++.
T Consensus 241 ~~~~~lVF~~t~~--------------~~~~l~~~L~~~~~~-v~~~hg~~~ 277 (460)
T PRK11776 241 QPESCVVFCNTKK--------------ECQEVADALNAQGFS-ALALHGDLE 277 (460)
T ss_pred CCCceEEEECCHH--------------HHHHHHHHHHhCCCc-EEEEeCCCC
Confidence 3467899999986 889999999999985 888888774
No 132
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=31.99 E-value=53 Score=22.99 Aligned_cols=30 Identities=10% Similarity=-0.041 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHcCccceeEccccHHHHHhc
Q 030946 131 RSLIAAYLLVLNGYKNVYHLEGGLYKWFKE 160 (168)
Q Consensus 131 rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~ 160 (168)
-+..++..|...|+.++.++++..-...+-
T Consensus 13 vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl 42 (135)
T PF00899_consen 13 VGSEVAKNLARSGVGKITLVDDDIVEPSNL 42 (135)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSBB-GGGC
T ss_pred HHHHHHHHHHHhCCCceeecCCcceeeccc
Confidence 688899999999999999999876554443
No 133
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=31.78 E-value=51 Score=29.80 Aligned_cols=38 Identities=24% Similarity=0.166 Sum_probs=32.3
Q ss_pred CCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHH
Q 030946 103 DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY 155 (168)
Q Consensus 103 ~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~ 155 (168)
..+..-|+||.+-. .+...+.+|...|+. +..|.||+.
T Consensus 228 ~~~~~GIIYc~sRk--------------~~E~ia~~L~~~g~~-a~~YHaGl~ 265 (590)
T COG0514 228 QLSKSGIIYCLTRK--------------KVEELAEWLRKNGIS-AGAYHAGLS 265 (590)
T ss_pred ccCCCeEEEEeeHH--------------hHHHHHHHHHHCCCc-eEEecCCCC
Confidence 34566899999987 889999999999985 888999984
No 134
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=31.60 E-value=72 Score=21.32 Aligned_cols=38 Identities=18% Similarity=0.194 Sum_probs=24.0
Q ss_pred CCeEEEEeCCCCCCCCCCCCCCCccchHHHHHH----HHHHcCccceeEccccHHHH
Q 030946 105 DAKIIVACATGGTMKPSQNLPEGQQSRSLIAAY----LLVLNGYKNVYHLEGGLYKW 157 (168)
Q Consensus 105 ~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~----~L~~~G~~~v~~l~GG~~~w 157 (168)
.++|++.|++|. .+..++. .+++.|++ +.+-..++...
T Consensus 3 ~~~ILl~C~~G~--------------sSS~l~~k~~~~~~~~gi~-~~v~a~~~~~~ 44 (95)
T TIGR00853 3 ETNILLLCAAGM--------------STSLLVNKMNKAAEEYGVP-VKIAAGSYGAA 44 (95)
T ss_pred ccEEEEECCCch--------------hHHHHHHHHHHHHHHCCCc-EEEEEecHHHH
Confidence 468999999997 3333434 44556774 55655565544
No 135
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=31.28 E-value=77 Score=20.59 Aligned_cols=25 Identities=24% Similarity=0.169 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHcCccceeEccccHHH
Q 030946 131 RSLIAAYLLVLNGYKNVYHLEGGLYK 156 (168)
Q Consensus 131 rs~~a~~~L~~~G~~~v~~l~GG~~~ 156 (168)
....+...|+..+.++++++ ||-..
T Consensus 60 l~~~~~~~l~~~~~~~v~ii-Gg~~~ 84 (92)
T PF04122_consen 60 LPSSVKAFLKSLNIKKVYII-GGEGA 84 (92)
T ss_pred CCHHHHHHHHHcCCCEEEEE-CCCCc
Confidence 45678889999999888888 76543
No 136
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=31.22 E-value=53 Score=29.38 Aligned_cols=38 Identities=26% Similarity=0.236 Sum_probs=31.6
Q ss_pred CCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHH
Q 030946 103 DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY 155 (168)
Q Consensus 103 ~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~ 155 (168)
....+++|||++-. .+..++..|...|+. +..+.|++.
T Consensus 255 ~~~~k~LVF~nt~~--------------~ae~l~~~L~~~g~~-v~~lhg~l~ 292 (572)
T PRK04537 255 SEGARTMVFVNTKA--------------FVERVARTLERHGYR-VGVLSGDVP 292 (572)
T ss_pred ccCCcEEEEeCCHH--------------HHHHHHHHHHHcCCC-EEEEeCCCC
Confidence 34578999999976 888999999999985 888888754
No 137
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=30.91 E-value=64 Score=21.76 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=21.4
Q ss_pred cccceecHHHHHHHhhcCCeEEEecCCh
Q 030946 17 LQVRSVEAKEALRLQKENNFVILDVRPE 44 (168)
Q Consensus 17 ~~~~~i~~~~l~~~l~~~~~~liDvR~~ 44 (168)
..+..++.+++...+. +..+|||+|.-
T Consensus 77 ~~f~~l~~~~~~~~~~-~~~~iiD~~~~ 103 (106)
T PF03720_consen 77 DEFRELDWEEIAKLMR-KPPVIIDGRNI 103 (106)
T ss_dssp GGGGCCGHHHHHHHSC-SSEEEEESSST
T ss_pred HHHhccCHHHHHHhcC-CCCEEEECccc
Confidence 4566788999988884 47999999963
No 138
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=30.69 E-value=72 Score=21.89 Aligned_cols=16 Identities=25% Similarity=0.671 Sum_probs=13.4
Q ss_pred CCCCCeEEEEeCCCCC
Q 030946 102 LDKDAKIIVACATGGT 117 (168)
Q Consensus 102 ~~~~~~iV~yc~~g~~ 117 (168)
..++.+|+|+|..|..
T Consensus 70 ~~~~~~VlVHC~~G~~ 85 (133)
T PF00782_consen 70 ISEGGKVLVHCKAGLS 85 (133)
T ss_dssp HHTTSEEEEEESSSSS
T ss_pred hcccceeEEEeCCCcc
Confidence 4567899999999983
No 139
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=30.50 E-value=85 Score=27.17 Aligned_cols=37 Identities=27% Similarity=0.393 Sum_probs=30.0
Q ss_pred CCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHH
Q 030946 104 KDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY 155 (168)
Q Consensus 104 ~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~ 155 (168)
.+.++++||++.. .+...+..|+..|+. .--|.|-+.
T Consensus 299 ~g~s~iVF~~t~~--------------tt~~la~~L~~lg~~-a~~LhGqms 335 (476)
T KOG0330|consen 299 AGNSVIVFCNTCN--------------TTRFLALLLRNLGFQ-AIPLHGQMS 335 (476)
T ss_pred cCCcEEEEEeccc--------------hHHHHHHHHHhcCcc-eecccchhh
Confidence 3478999999987 788999999999995 666666554
No 140
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=30.33 E-value=1.2e+02 Score=24.94 Aligned_cols=33 Identities=15% Similarity=0.089 Sum_probs=21.4
Q ss_pred CccchHHHHHHHHHHcCccceeEccccHHHHHhc
Q 030946 127 GQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE 160 (168)
Q Consensus 127 ~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~ 160 (168)
|-+..+....+.|++.|++ +.++.=|-.+|.-+
T Consensus 125 GK~tTal~L~~~l~~~G~~-a~fvaTGQTGimia 157 (301)
T PF07755_consen 125 GKMTTALELRRALRERGIN-AGFVATGQTGIMIA 157 (301)
T ss_dssp SHHHHHHHHHHHHHHTT---EEEEE-SHHHHHCH
T ss_pred cHHHHHHHHHHHHHHcCCC-ceEEecCCceEEEe
Confidence 3345677788899999995 77776667766544
No 141
>PLN02645 phosphoglycolate phosphatase
Probab=29.29 E-value=1e+02 Score=25.07 Aligned_cols=37 Identities=14% Similarity=0.018 Sum_probs=23.5
Q ss_pred cceecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCc
Q 030946 19 VRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGA 55 (168)
Q Consensus 19 ~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgA 55 (168)
....+.+++.+++.+-+.+++|+-.---....-|||+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~D~DGtl~~~~~~~~ga 49 (311)
T PLN02645 13 AQLLTLENADELIDSVETFIFDCDGVIWKGDKLIEGV 49 (311)
T ss_pred cccCCHHHHHHHHHhCCEEEEeCcCCeEeCCccCcCH
Confidence 3456677888888766899999865332222235555
No 142
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=29.21 E-value=2.3e+02 Score=23.01 Aligned_cols=37 Identities=16% Similarity=0.269 Sum_probs=23.6
Q ss_pred CCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEcc
Q 030946 105 DAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLE 151 (168)
Q Consensus 105 ~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~ 151 (168)
.+.|.|++..|+ .|--.-+...++.|.+.|++ |.+++
T Consensus 93 ~~vIav~~~KGG---------vGkTT~a~nLA~~la~~g~~-VlLvD 129 (322)
T TIGR03815 93 GVVVAVIGGRGG---------AGASTLAAALALAAARHGLR-TLLVD 129 (322)
T ss_pred ceEEEEEcCCCC---------CcHHHHHHHHHHHHHhcCCC-EEEEe
Confidence 344555555565 34444567778888888864 77665
No 143
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=28.75 E-value=56 Score=29.14 Aligned_cols=36 Identities=17% Similarity=0.090 Sum_probs=30.1
Q ss_pred CCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHH
Q 030946 105 DAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY 155 (168)
Q Consensus 105 ~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~ 155 (168)
+.+.|+||++-. .+..++..|...|+. +..+.||+.
T Consensus 224 ~~~~IIf~~sr~--------------~~e~la~~L~~~g~~-~~~~H~~l~ 259 (591)
T TIGR01389 224 GQSGIIYASSRK--------------KVEELAERLESQGIS-ALAYHAGLS 259 (591)
T ss_pred CCCEEEEECcHH--------------HHHHHHHHHHhCCCC-EEEEECCCC
Confidence 567899999986 788899999999985 777888764
No 144
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=28.57 E-value=98 Score=26.69 Aligned_cols=36 Identities=17% Similarity=0.086 Sum_probs=28.0
Q ss_pred CCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeE
Q 030946 103 DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYH 149 (168)
Q Consensus 103 ~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~ 149 (168)
-.+++||+++++-.. | ..+.....+|++.|-++|++
T Consensus 354 ~~GKrvvlVDDSIVR---------G--tTs~~IVkmlreaGAkeVh~ 389 (474)
T KOG0572|consen 354 FEGKRVVLVDDSIVR---------G--TTSSPIVKMLREAGAKEVHI 389 (474)
T ss_pred cCCceEEEEecceec---------c--CchHHHHHHHHHcCCcEEEE
Confidence 467899999998320 0 16778999999999998886
No 145
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=28.17 E-value=96 Score=26.13 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=30.1
Q ss_pred chHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEcc
Q 030946 90 NPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLE 151 (168)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~ 151 (168)
+.+|+.......+ ++.-||++..+|. ...++.+|...|..++.+++
T Consensus 60 N~aFfGee~m~kl-~~syVVVVG~GgV---------------GSwv~nmL~RSG~qKi~iVD 105 (430)
T KOG2018|consen 60 NYAFFGEEGMEKL-TNSYVVVVGAGGV---------------GSWVANMLLRSGVQKIRIVD 105 (430)
T ss_pred HHhhhhhhHHHHh-cCcEEEEEecCch---------------hHHHHHHHHHhcCceEEEec
Confidence 4455554222223 4566777766664 55789999999998888875
No 146
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=27.68 E-value=1.5e+02 Score=20.85 Aligned_cols=14 Identities=29% Similarity=0.430 Sum_probs=7.1
Q ss_pred eeEccccHHHHHhc
Q 030946 147 VYHLEGGLYKWFKE 160 (168)
Q Consensus 147 v~~l~GG~~~w~~~ 160 (168)
|++..|.-..|++.
T Consensus 62 v~v~VG~r~~Wkdp 75 (119)
T PF06110_consen 62 VYVEVGDRPEWKDP 75 (119)
T ss_dssp EEEE---HHHHC-T
T ss_pred EEEEcCCHHHhCCC
Confidence 45667888889764
No 147
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=27.48 E-value=66 Score=27.70 Aligned_cols=34 Identities=24% Similarity=0.289 Sum_probs=27.9
Q ss_pred eEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHH
Q 030946 107 KIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY 155 (168)
Q Consensus 107 ~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~ 155 (168)
.-|+||.+.. .+...+..|++.|++ |..|.|-+.
T Consensus 332 qsiIFc~tk~--------------ta~~l~~~m~~~Gh~-V~~l~G~l~ 365 (477)
T KOG0332|consen 332 QSIIFCHTKA--------------TAMWLYEEMRAEGHQ-VSLLHGDLT 365 (477)
T ss_pred heEEEEeehh--------------hHHHHHHHHHhcCce-eEEeeccch
Confidence 4467788776 788899999999996 999998764
No 148
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=27.34 E-value=80 Score=27.82 Aligned_cols=35 Identities=31% Similarity=0.253 Sum_probs=30.4
Q ss_pred CeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHH
Q 030946 106 AKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY 155 (168)
Q Consensus 106 ~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~ 155 (168)
..+|+||++.. .+...+..|...|+. +..|.|++.
T Consensus 274 ~~~IVF~~tk~--------------~~~~l~~~l~~~g~~-~~~lhG~l~ 308 (513)
T COG0513 274 GRVIVFVRTKR--------------LVEELAESLRKRGFK-VAALHGDLP 308 (513)
T ss_pred CeEEEEeCcHH--------------HHHHHHHHHHHCCCe-EEEecCCCC
Confidence 36999999987 888999999999985 999999864
No 149
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=27.06 E-value=43 Score=29.39 Aligned_cols=43 Identities=30% Similarity=0.525 Sum_probs=34.2
Q ss_pred EEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccH---------HHHHhcCCCCC
Q 030946 108 IIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGL---------YKWFKEELPEV 165 (168)
Q Consensus 108 iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~---------~~w~~~g~p~~ 165 (168)
-|+||.+-. ...++|-.|...|+. ..-|.-|+ ++|.+..-|+.
T Consensus 258 GIVYCRTR~--------------~cEq~AI~l~~~Gi~-A~AYHAGLK~~ERTeVQe~WM~~~~PvI 309 (641)
T KOG0352|consen 258 GIVYCRTRN--------------ECEQVAIMLEIAGIP-AMAYHAGLKKKERTEVQEKWMNNEIPVI 309 (641)
T ss_pred eEEEeccHH--------------HHHHHHHHhhhcCcc-hHHHhcccccchhHHHHHHHhcCCCCEE
Confidence 689999987 889999999999985 55555565 57888877764
No 150
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=26.78 E-value=65 Score=29.84 Aligned_cols=43 Identities=12% Similarity=0.209 Sum_probs=31.6
Q ss_pred CCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccH
Q 030946 102 LDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGL 154 (168)
Q Consensus 102 ~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~ 154 (168)
+..+..||++|..... .......+...|++.|.+++.++.||.
T Consensus 630 ~~~~a~ivvlcs~d~~----------~~e~~~~l~~~Lk~~G~~~v~vl~GG~ 672 (714)
T PRK09426 630 VENDVHVVGVSSLAAG----------HKTLVPALIEALKKLGREDIMVVVGGV 672 (714)
T ss_pred HHcCCCEEEEeccchh----------hHHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence 3456779999987541 112456788899999988898888875
No 151
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=26.50 E-value=1.3e+02 Score=18.28 Aligned_cols=26 Identities=23% Similarity=0.178 Sum_probs=20.3
Q ss_pred eEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCcc
Q 030946 107 KIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYK 145 (168)
Q Consensus 107 ~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~ 145 (168)
+|++|...+. | .+.++-..|.+.|++
T Consensus 2 ~v~lys~~~C---p----------~C~~ak~~L~~~~i~ 27 (72)
T cd03029 2 SVSLFTKPGC---P----------FCARAKAALQENGIS 27 (72)
T ss_pred eEEEEECCCC---H----------HHHHHHHHHHHcCCC
Confidence 6788888764 3 778888999998875
No 152
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=26.34 E-value=87 Score=20.80 Aligned_cols=38 Identities=29% Similarity=0.238 Sum_probs=24.3
Q ss_pred eEEEEeCCCCCCCCCCCCCCCccchHHHHH----HHHHHcCccceeEccccHHHHH
Q 030946 107 KIIVACATGGTMKPSQNLPEGQQSRSLIAA----YLLVLNGYKNVYHLEGGLYKWF 158 (168)
Q Consensus 107 ~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~----~~L~~~G~~~v~~l~GG~~~w~ 158 (168)
+|++.|++|. ..|..++ ..|.+.|++ +.+....+....
T Consensus 4 kILvvCgsG~-------------~TS~m~~~ki~~~l~~~gi~-~~v~~~~~~e~~ 45 (94)
T PRK10310 4 KIIVACGGAV-------------ATSTMAAEEIKELCQSHNIP-VELIQCRVNEIE 45 (94)
T ss_pred eEEEECCCch-------------hHHHHHHHHHHHHHHHCCCe-EEEEEecHHHHh
Confidence 6999999997 3554444 445567874 666555555543
No 153
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=26.23 E-value=68 Score=29.23 Aligned_cols=39 Identities=21% Similarity=0.134 Sum_probs=31.8
Q ss_pred CCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHH
Q 030946 102 LDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY 155 (168)
Q Consensus 102 ~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~ 155 (168)
...+.+++++|++-. ++.+.+..|...|++ +..+.|++.
T Consensus 443 ~~~g~~viIf~~t~~--------------~ae~L~~~L~~~gi~-~~~~h~~~~ 481 (652)
T PRK05298 443 VAKGERVLVTTLTKR--------------MAEDLTDYLKELGIK-VRYLHSDID 481 (652)
T ss_pred HhCCCEEEEEeCCHH--------------HHHHHHHHHhhccee-EEEEECCCC
Confidence 356778999999986 899999999999985 777767654
No 154
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=26.09 E-value=90 Score=19.87 Aligned_cols=10 Identities=40% Similarity=0.863 Sum_probs=8.6
Q ss_pred eEEEEeCCCC
Q 030946 107 KIIVACATGG 116 (168)
Q Consensus 107 ~iV~yc~~g~ 116 (168)
+++++|+.|.
T Consensus 1 kilvvC~~G~ 10 (86)
T cd05563 1 KILAVCGSGL 10 (86)
T ss_pred CEEEECCCCc
Confidence 3789999998
No 155
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=26.04 E-value=73 Score=27.39 Aligned_cols=37 Identities=16% Similarity=0.068 Sum_probs=30.3
Q ss_pred CCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHH
Q 030946 104 KDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY 155 (168)
Q Consensus 104 ~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~ 155 (168)
...++++||++-. .+..++..|...|+. +..+.|++.
T Consensus 244 ~~~~~lVF~~t~~--------------~~~~l~~~L~~~g~~-~~~lhg~~~ 280 (456)
T PRK10590 244 NWQQVLVFTRTKH--------------GANHLAEQLNKDGIR-SAAIHGNKS 280 (456)
T ss_pred CCCcEEEEcCcHH--------------HHHHHHHHHHHCCCC-EEEEECCCC
Confidence 3467899999976 788899999999985 778888764
No 156
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=25.82 E-value=92 Score=21.31 Aligned_cols=37 Identities=22% Similarity=0.117 Sum_probs=23.0
Q ss_pred CeEEEEeCCCCCCCCCCCCCCCccchHHHHHHH----HHHcCccceeEccccHHHH
Q 030946 106 AKIIVACATGGTMKPSQNLPEGQQSRSLIAAYL----LVLNGYKNVYHLEGGLYKW 157 (168)
Q Consensus 106 ~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~----L~~~G~~~v~~l~GG~~~w 157 (168)
++|++.|++|. .+..++.. +.+.|++ +.+-..+....
T Consensus 2 kkILlvCg~G~--------------STSlla~k~k~~~~e~gi~-~~i~a~~~~e~ 42 (104)
T PRK09590 2 KKALIICAAGM--------------SSSMMAKKTTEYLKEQGKD-IEVDAITATEG 42 (104)
T ss_pred cEEEEECCCch--------------HHHHHHHHHHHHHHHCCCc-eEEEEecHHHH
Confidence 46899999997 34345444 4556774 55555555543
No 157
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=25.65 E-value=1.1e+02 Score=19.68 Aligned_cols=10 Identities=70% Similarity=1.119 Sum_probs=9.0
Q ss_pred eEEEEeCCCC
Q 030946 107 KIIVACATGG 116 (168)
Q Consensus 107 ~iV~yc~~g~ 116 (168)
+++++|.+|.
T Consensus 2 ~ilivC~~G~ 11 (89)
T cd05566 2 KILVACGTGV 11 (89)
T ss_pred EEEEECCCCc
Confidence 6899999997
No 158
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=25.62 E-value=75 Score=23.78 Aligned_cols=18 Identities=17% Similarity=0.412 Sum_probs=15.4
Q ss_pred ccCCCCCeEEEEeCCCCC
Q 030946 100 SQLDKDAKIIVACATGGT 117 (168)
Q Consensus 100 ~~~~~~~~iV~yc~~g~~ 117 (168)
.++++.+++++.|--|..
T Consensus 88 ~~wp~~apllIHC~aGIS 105 (172)
T COG5350 88 DEWPRFAPLLIHCYAGIS 105 (172)
T ss_pred hcCccccceeeeeccccc
Confidence 347889999999999984
No 159
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=25.61 E-value=99 Score=27.30 Aligned_cols=36 Identities=36% Similarity=0.396 Sum_probs=27.9
Q ss_pred CCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEcccc
Q 030946 103 DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGG 153 (168)
Q Consensus 103 ~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG 153 (168)
..+.+||++..+- ....+|..|-+.|+.++.+|.|.
T Consensus 19 ~~~~kIvIIGAG~---------------AGLaAA~rLle~gf~~~~IlEa~ 54 (498)
T KOG0685|consen 19 RGNAKIVIIGAGI---------------AGLAAATRLLENGFIDVLILEAS 54 (498)
T ss_pred cCCceEEEECCch---------------HHHHHHHHHHHhCCceEEEEEec
Confidence 4456788887763 56678999999999999998864
No 160
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=25.31 E-value=77 Score=19.34 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=14.8
Q ss_pred eEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHH
Q 030946 107 KIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL 141 (168)
Q Consensus 107 ~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~ 141 (168)
+++++|+.|. ..+..+...|++
T Consensus 1 ~il~vc~~G~-------------~~s~~l~~~l~~ 22 (84)
T cd00133 1 KILVVCGSGI-------------GSSSMLAEKLEK 22 (84)
T ss_pred CEEEECCCcH-------------hHHHHHHHHHHH
Confidence 4789999985 256556665554
No 161
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=24.71 E-value=98 Score=25.99 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=28.9
Q ss_pred CCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHH
Q 030946 104 KDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY 155 (168)
Q Consensus 104 ~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~ 155 (168)
++++|+++ +.|+ .+..++..|...|+.++.++++..-
T Consensus 134 ~~~~Vlvv-G~GG--------------~Gs~ia~~La~~Gvg~i~lvD~d~v 170 (376)
T PRK08762 134 LEARVLLI-GAGG--------------LGSPAALYLAAAGVGTLGIVDHDVV 170 (376)
T ss_pred hcCcEEEE-CCCH--------------HHHHHHHHHHHcCCCeEEEEeCCEe
Confidence 45566666 4444 7888999999999999999998743
No 162
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=24.46 E-value=2.1e+02 Score=20.17 Aligned_cols=32 Identities=22% Similarity=0.236 Sum_probs=21.1
Q ss_pred CCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCcc
Q 030946 102 LDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYK 145 (168)
Q Consensus 102 ~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~ 145 (168)
+.+++-+|+++.+|.. .....++...++.|..
T Consensus 101 ~~~gDvli~iS~SG~s------------~~vi~a~~~Ak~~G~~ 132 (138)
T PF13580_consen 101 IRPGDVLIVISNSGNS------------PNVIEAAEEAKERGMK 132 (138)
T ss_dssp --TT-EEEEEESSS-S------------HHHHHHHHHHHHTT-E
T ss_pred CCCCCEEEEECCCCCC------------HHHHHHHHHHHHCCCE
Confidence 7888999999999973 2455678888888875
No 163
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=24.18 E-value=1.8e+02 Score=17.71 Aligned_cols=26 Identities=12% Similarity=0.176 Sum_probs=20.0
Q ss_pred eEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCcc
Q 030946 107 KIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYK 145 (168)
Q Consensus 107 ~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~ 145 (168)
+|++|...+. | .+.++-.+|.+.|++
T Consensus 2 ~v~ly~~~~C---~----------~C~ka~~~L~~~gi~ 27 (73)
T cd03027 2 RVTIYSRLGC---E----------DCTAVRLFLREKGLP 27 (73)
T ss_pred EEEEEecCCC---h----------hHHHHHHHHHHCCCc
Confidence 5788888754 3 677888889998875
No 164
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=23.73 E-value=95 Score=26.77 Aligned_cols=38 Identities=16% Similarity=0.143 Sum_probs=30.5
Q ss_pred CCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHH
Q 030946 104 KDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYK 156 (168)
Q Consensus 104 ~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~ 156 (168)
...++++||++-. .+...+..|...|+. +..+.|++..
T Consensus 334 ~~~~~IVF~~s~~--------------~~~~l~~~L~~~~~~-~~~~~g~~~~ 371 (475)
T PRK01297 334 PWERVMVFANRKD--------------EVRRIEERLVKDGIN-AAQLSGDVPQ 371 (475)
T ss_pred CCCeEEEEeCCHH--------------HHHHHHHHHHHcCCC-EEEEECCCCH
Confidence 3458999999976 788899999999985 7788887643
No 165
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=22.84 E-value=2e+02 Score=21.76 Aligned_cols=40 Identities=20% Similarity=0.221 Sum_probs=27.9
Q ss_pred CCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCcc-cee---Ecccc
Q 030946 102 LDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYK-NVY---HLEGG 153 (168)
Q Consensus 102 ~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~-~v~---~l~GG 153 (168)
..+..-|.+||+.|.. ...+.....++.+|.- +|. ++.|+
T Consensus 18 ~~~~Gli~VYtGdGKG------------KTTAAlGlalRAaG~G~rV~iiQFlKg~ 61 (178)
T PRK07414 18 YTIEGLVQVFTSSQRN------------FFTSVMAQALRIAGQGTPVLIVQFLKGG 61 (178)
T ss_pred CCCCCEEEEEeCCCCC------------chHHHHHHHHHHhcCCCEEEEEEEecCC
Confidence 4566789999999874 2556677788888763 344 56676
No 166
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=22.69 E-value=1.3e+02 Score=20.66 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=19.5
Q ss_pred ccCCCCCeEEEEeC-CCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccc
Q 030946 100 SQLDKDAKIIVACA-TGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEG 152 (168)
Q Consensus 100 ~~~~~~~~iV~yc~-~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~G 152 (168)
..++.++.|++.+. -|+ ....++..+. ..+++++++.|
T Consensus 53 ~~~~~~~~vivltDl~GG--------------Sp~n~a~~~~-~~~~~~~vIsG 91 (116)
T TIGR00824 53 ADLDTEEEVLFLVDIFGG--------------SPYNAAARII-VDKPHMDVIAG 91 (116)
T ss_pred HhcCCCCCEEEEEeCCCC--------------CHHHHHHHHH-hhcCCEEEEEe
Confidence 34555555555554 455 4455554332 12456776654
No 167
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=22.67 E-value=1.2e+02 Score=25.08 Aligned_cols=32 Identities=22% Similarity=0.145 Sum_probs=25.1
Q ss_pred CCCeEEEEe---CCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeE
Q 030946 104 KDAKIIVAC---ATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYH 149 (168)
Q Consensus 104 ~~~~iV~yc---~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~ 149 (168)
+++++|+++ .+|+ .-..++..|++.|..+|+.
T Consensus 216 ~Gr~viIVDDIidTG~--------------Tl~~aa~~Lk~~GA~~V~~ 250 (319)
T PRK04923 216 QGKTCVLVDDLVDTAG--------------TLCAAAAALKQRGALKVVA 250 (319)
T ss_pred CCCEEEEEecccCchH--------------HHHHHHHHHHHCCCCEEEE
Confidence 567888874 4555 7788999999999988774
No 168
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=22.58 E-value=28 Score=26.46 Aligned_cols=41 Identities=22% Similarity=0.332 Sum_probs=29.5
Q ss_pred chhhhhHhhhhhhhhcccceecHHHHHHHhhcCCeEEEecCChhhhh
Q 030946 2 IKLSLWIKSVEVFYLLQVRSVEAKEALRLQKENNFVILDVRPEAEFK 48 (168)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~liDvR~~~e~~ 48 (168)
++|+.|-.++ ++..+.|+...++.-. +..++.|+.+...|+
T Consensus 58 iklqlwdtag----qerfrsitksyyrnsv--gvllvyditnr~sfe 98 (213)
T KOG0091|consen 58 IKLQLWDTAG----QERFRSITKSYYRNSV--GVLLVYDITNRESFE 98 (213)
T ss_pred EEEEEeeccc----hHHHHHHHHHHhhccc--ceEEEEeccchhhHH
Confidence 4677788887 6677778877776655 357788888877774
No 169
>PTZ00424 helicase 45; Provisional
Probab=22.58 E-value=1.2e+02 Score=25.18 Aligned_cols=36 Identities=14% Similarity=0.187 Sum_probs=29.4
Q ss_pred CCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHH
Q 030946 105 DAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY 155 (168)
Q Consensus 105 ~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~ 155 (168)
...+++||++-. .+...+..|...|+. +..+.|++.
T Consensus 267 ~~~~ivF~~t~~--------------~~~~l~~~l~~~~~~-~~~~h~~~~ 302 (401)
T PTZ00424 267 ITQAIIYCNTRR--------------KVDYLTKKMHERDFT-VSCMHGDMD 302 (401)
T ss_pred CCeEEEEecCcH--------------HHHHHHHHHHHCCCc-EEEEeCCCC
Confidence 457889999876 788899999999884 888888864
No 170
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=22.54 E-value=1.1e+02 Score=25.15 Aligned_cols=33 Identities=18% Similarity=0.070 Sum_probs=25.0
Q ss_pred CCCeEEEEeC---CCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEc
Q 030946 104 KDAKIIVACA---TGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHL 150 (168)
Q Consensus 104 ~~~~iV~yc~---~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l 150 (168)
+++++|+++. +|+ .-..+++.|++.|.++|+.+
T Consensus 210 ~Gr~vIIVDDIidTG~--------------Tl~~aa~~Lk~~GA~~V~~~ 245 (301)
T PRK07199 210 AGRTPVLVDDIVSTGR--------------TLIEAARQLRAAGAASPDCV 245 (301)
T ss_pred CCCEEEEEecccCcHH--------------HHHHHHHHHHHCCCcEEEEE
Confidence 5678888754 454 67789999999999877643
No 171
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=22.52 E-value=1.2e+02 Score=24.36 Aligned_cols=33 Identities=24% Similarity=0.251 Sum_probs=24.9
Q ss_pred CCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEcc
Q 030946 104 KDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLE 151 (168)
Q Consensus 104 ~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~ 151 (168)
++++++++..+| .+..++..|.+.|+.++.++.
T Consensus 124 ~~k~vlvlGaGG---------------aarai~~aL~~~G~~~i~I~n 156 (282)
T TIGR01809 124 AGFRGLVIGAGG---------------TSRAAVYALASLGVTDITVIN 156 (282)
T ss_pred CCceEEEEcCcH---------------HHHHHHHHHHHcCCCeEEEEe
Confidence 456777776655 456688889999998888875
No 172
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=22.41 E-value=1.1e+02 Score=27.17 Aligned_cols=38 Identities=24% Similarity=0.312 Sum_probs=31.6
Q ss_pred CCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHH
Q 030946 103 DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY 155 (168)
Q Consensus 103 ~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~ 155 (168)
.+..++||||++-. .+...+..|+..||. +..+.|...
T Consensus 339 ~~~~KvIIFc~tkr--------------~~~~l~~~l~~~~~~-a~~iHGd~s 376 (519)
T KOG0331|consen 339 DSEGKVIIFCETKR--------------TCDELARNLRRKGWP-AVAIHGDKS 376 (519)
T ss_pred cCCCcEEEEecchh--------------hHHHHHHHHHhcCcc-eeeeccccc
Confidence 35568999999987 899999999999984 778877763
No 173
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=22.28 E-value=2.2e+02 Score=18.93 Aligned_cols=29 Identities=10% Similarity=0.161 Sum_probs=22.3
Q ss_pred CCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCcc
Q 030946 104 KDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYK 145 (168)
Q Consensus 104 ~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~ 145 (168)
+..+|++|..+. || .+.++-..|.+.|++
T Consensus 6 ~~~~Vvvysk~~---Cp----------~C~~ak~~L~~~~i~ 34 (99)
T TIGR02189 6 SEKAVVIFSRSS---CC----------MCHVVKRLLLTLGVN 34 (99)
T ss_pred ccCCEEEEECCC---CH----------HHHHHHHHHHHcCCC
Confidence 346799999864 55 777888888888874
No 174
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=22.11 E-value=2e+02 Score=20.94 Aligned_cols=48 Identities=15% Similarity=0.141 Sum_probs=29.8
Q ss_pred hHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEcccc
Q 030946 91 PEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGG 153 (168)
Q Consensus 91 ~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG 153 (168)
.+++++ ....+.++..++++..... ....+...|++.||....+-..|
T Consensus 120 ~~~l~~-~~~~Lk~gG~~~~~~~~~~--------------~~~~~~~~l~~~gf~~~~~~~~~ 167 (179)
T TIGR00537 120 DRFLDE-LPEILKEGGRVQLIQSSLN--------------GEPDTFDKLDERGFRYEIVAERG 167 (179)
T ss_pred HHHHHh-HHHhhCCCCEEEEEEeccC--------------ChHHHHHHHHhCCCeEEEEEEee
Confidence 455555 3344566667666655443 46678899999999744444443
No 175
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.10 E-value=1.2e+02 Score=26.45 Aligned_cols=32 Identities=25% Similarity=0.543 Sum_probs=22.9
Q ss_pred EEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEc
Q 030946 108 IIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHL 150 (168)
Q Consensus 108 iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l 150 (168)
|++.|..|. +|+ ....+++.|...||..+.+|
T Consensus 269 V~Ilcgpgn---------ngg--dg~v~gRHL~~~G~~~vi~~ 300 (453)
T KOG2585|consen 269 VAILCGPGN---------NGG--DGLVCGRHLAQHGYTPVIYY 300 (453)
T ss_pred EEEEeCCCC---------ccc--hhHHHHHHHHHcCceeEEEe
Confidence 888888876 333 33448999999999765544
No 176
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=22.09 E-value=1.7e+02 Score=19.51 Aligned_cols=29 Identities=10% Similarity=0.000 Sum_probs=20.7
Q ss_pred CCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCcc
Q 030946 104 KDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYK 145 (168)
Q Consensus 104 ~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~ 145 (168)
.+++++|..|++.. .....+..|..+|+.
T Consensus 29 ~g~~~~~lTNns~~-------------s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 29 RGKPVVFLTNNSSR-------------SREEYAKKLKKLGIP 57 (101)
T ss_dssp TTSEEEEEES-SSS--------------HHHHHHHHHHTTTT
T ss_pred cCCCEEEEeCCCCC-------------CHHHHHHHHHhcCcC
Confidence 45899999999861 336778888888875
No 177
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=21.89 E-value=89 Score=30.71 Aligned_cols=36 Identities=22% Similarity=0.109 Sum_probs=30.8
Q ss_pred CCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHH
Q 030946 105 DAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY 155 (168)
Q Consensus 105 ~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~ 155 (168)
+...|+||.+-. .+..++..|...|+. +..|.||+.
T Consensus 680 ~esgIIYC~SRk--------------e~E~LAe~L~~~Gik-a~~YHAGLs 715 (1195)
T PLN03137 680 DECGIIYCLSRM--------------DCEKVAERLQEFGHK-AAFYHGSMD 715 (1195)
T ss_pred CCCceeEeCchh--------------HHHHHHHHHHHCCCC-eeeeeCCCC
Confidence 456789999987 888999999999995 888999974
No 178
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=21.88 E-value=1.1e+02 Score=19.13 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=16.5
Q ss_pred eEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHc
Q 030946 107 KIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLN 142 (168)
Q Consensus 107 ~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~ 142 (168)
+++++|+.|. ..+......|++.
T Consensus 2 kilivC~~G~-------------~~s~~l~~~l~~~ 24 (85)
T cd05568 2 KALVVCPSGI-------------GTSRLLKSKLKKL 24 (85)
T ss_pred eEEEECCCCH-------------HHHHHHHHHHHHH
Confidence 5899999997 3555666666653
No 179
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=21.76 E-value=1.2e+02 Score=20.17 Aligned_cols=36 Identities=17% Similarity=0.103 Sum_probs=22.0
Q ss_pred eEEEEeCCCCCCCCCCCCCCCccchHHHHHHH----HHHcCccceeEccccHHHH
Q 030946 107 KIIVACATGGTMKPSQNLPEGQQSRSLIAAYL----LVLNGYKNVYHLEGGLYKW 157 (168)
Q Consensus 107 ~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~----L~~~G~~~v~~l~GG~~~w 157 (168)
+|++.|++|. .+..++.. +.+.|++ +.+-..++...
T Consensus 1 kIl~~Cg~G~--------------sTS~~~~ki~~~~~~~~~~-~~v~~~~~~~~ 40 (96)
T cd05564 1 KILLVCSAGM--------------STSILVKKMKKAAEKRGID-AEIEAVPESEL 40 (96)
T ss_pred CEEEEcCCCc--------------hHHHHHHHHHHHHHHCCCc-eEEEEecHHHH
Confidence 4889999997 33344444 4556774 55555555544
No 180
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=21.73 E-value=1.8e+02 Score=23.81 Aligned_cols=44 Identities=18% Similarity=0.061 Sum_probs=30.2
Q ss_pred CCCeEEEEeC---CCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEcc-------ccHHHHHhcC
Q 030946 104 KDAKIIVACA---TGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLE-------GGLYKWFKEE 161 (168)
Q Consensus 104 ~~~~iV~yc~---~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~-------GG~~~w~~~g 161 (168)
+++++++++. +|+ .-..+++.|++.|.++++.+. +++....++|
T Consensus 200 ~gr~viIVDDIi~TG~--------------Tl~~aa~~Lk~~Ga~~I~~~~tH~v~~~~a~~~l~~~~ 253 (304)
T PRK03092 200 EGRTCVLVDDMIDTGG--------------TIAGAVRALKEAGAKDVIIAATHGVLSGPAAERLKNCG 253 (304)
T ss_pred CCCEEEEEccccCcHH--------------HHHHHHHHHHhcCCCeEEEEEEcccCChHHHHHHHHCC
Confidence 5567888754 454 677899999999998877544 3345555554
No 181
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=21.72 E-value=1.2e+02 Score=25.96 Aligned_cols=42 Identities=26% Similarity=0.335 Sum_probs=32.2
Q ss_pred CCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHc--CccceeEccccH
Q 030946 104 KDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLN--GYKNVYHLEGGL 154 (168)
Q Consensus 104 ~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~--G~~~v~~l~GG~ 154 (168)
+..+|++||..-- |-|--.|+...+..|.+- |++ |.++.||-
T Consensus 8 ~~~Ri~~Yshd~~--------GlGHlrR~~~Ia~aLv~d~~~~~-Il~IsG~~ 51 (400)
T COG4671 8 KRPRILFYSHDLL--------GLGHLRRALRIAHALVEDYLGFD-ILIISGGP 51 (400)
T ss_pred ccceEEEEehhhc--------cchHHHHHHHHHHHHhhcccCce-EEEEeCCC
Confidence 4458999998743 334445888999999987 885 99998874
No 182
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=21.72 E-value=2e+02 Score=22.90 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=13.6
Q ss_pred CCCCCccchHHHHHHHHHHcCcc
Q 030946 123 NLPEGQQSRSLIAAYLLVLNGYK 145 (168)
Q Consensus 123 ~~~~~~~~rs~~a~~~L~~~G~~ 145 (168)
.+|-|=..|+...|..|++.|++
T Consensus 11 ~iG~GHv~Rcl~LA~~l~~~g~~ 33 (279)
T TIGR03590 11 EIGLGHVMRCLTLARALHAQGAE 33 (279)
T ss_pred cccccHHHHHHHHHHHHHHCCCE
Confidence 34555555666666666666654
No 183
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=21.56 E-value=1.4e+02 Score=24.19 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=24.1
Q ss_pred CCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEcc
Q 030946 104 KDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLE 151 (168)
Q Consensus 104 ~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~ 151 (168)
++++++++..+| .+.-++..|.+.|..+++++.
T Consensus 126 ~~k~vlilGaGG---------------aarAi~~aL~~~g~~~i~i~n 158 (283)
T PRK14027 126 KLDSVVQVGAGG---------------VGNAVAYALVTHGVQKLQVAD 158 (283)
T ss_pred CCCeEEEECCcH---------------HHHHHHHHHHHCCCCEEEEEc
Confidence 356777776655 455678888899998888775
No 184
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=21.44 E-value=1.6e+02 Score=20.25 Aligned_cols=37 Identities=24% Similarity=0.318 Sum_probs=20.4
Q ss_pred cCCCCCeEEEEeCC-CCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccc
Q 030946 101 QLDKDAKIIVACAT-GGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEG 152 (168)
Q Consensus 101 ~~~~~~~iV~yc~~-g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~G 152 (168)
..+.++.+++++.= |+ ...+.+..+.... .+++++.|
T Consensus 53 ~~~~~~~viil~Dl~GG--------------Sp~n~~~~~~~~~-~~~~visG 90 (122)
T cd00006 53 ELDSGEGVLILTDLFGG--------------SPNNAAARLSMEH-PPVEVIAG 90 (122)
T ss_pred HhCCCCcEEEEEeCCCC--------------CHHHHHHHHHhcC-CCEEEEEc
Confidence 34555666666665 55 4555555555433 56776653
No 185
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=21.43 E-value=1.2e+02 Score=20.54 Aligned_cols=37 Identities=24% Similarity=0.344 Sum_probs=23.4
Q ss_pred eEEEEeCCCCCCCCCCCCCCCccchHHHHHHH----HHHcCccceeEccccHHHHH
Q 030946 107 KIIVACATGGTMKPSQNLPEGQQSRSLIAAYL----LVLNGYKNVYHLEGGLYKWF 158 (168)
Q Consensus 107 ~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~----L~~~G~~~v~~l~GG~~~w~ 158 (168)
+|++.|++|- .+..++.. +++.|++ +.+...+.....
T Consensus 2 ~Ill~C~~Ga--------------SSs~la~km~~~a~~~gi~-~~i~a~~~~e~~ 42 (99)
T cd05565 2 NVLVLCAGGG--------------TSGLLANALNKGAKERGVP-LEAAAGAYGSHY 42 (99)
T ss_pred EEEEECCCCC--------------CHHHHHHHHHHHHHHCCCc-EEEEEeeHHHHH
Confidence 4889997775 55555544 4556874 666666665543
No 186
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=21.07 E-value=99 Score=28.30 Aligned_cols=39 Identities=18% Similarity=0.139 Sum_probs=31.8
Q ss_pred CCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHH
Q 030946 102 LDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY 155 (168)
Q Consensus 102 ~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~ 155 (168)
+.++.+++++|++-. ++...+..|...|++ +..+.|++.
T Consensus 439 ~~~g~~vLIf~~tk~--------------~ae~L~~~L~~~gi~-~~~lh~~~~ 477 (655)
T TIGR00631 439 VARNERVLVTTLTKK--------------MAEDLTDYLKELGIK-VRYLHSEID 477 (655)
T ss_pred HcCCCEEEEEECCHH--------------HHHHHHHHHhhhccc-eeeeeCCCC
Confidence 456788999999986 889999999999984 777767654
No 187
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=20.95 E-value=1.7e+02 Score=16.86 Aligned_cols=26 Identities=27% Similarity=0.236 Sum_probs=19.2
Q ss_pred eEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCcc
Q 030946 107 KIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYK 145 (168)
Q Consensus 107 ~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~ 145 (168)
+|++|...+. | .+..+-..|.+.|.+
T Consensus 1 ~v~ly~~~~C---p----------~C~~~~~~L~~~~i~ 26 (72)
T cd02066 1 KVVVFSKSTC---P----------YCKRAKRLLESLGIE 26 (72)
T ss_pred CEEEEECCCC---H----------HHHHHHHHHHHcCCc
Confidence 4677877653 3 777888889998875
No 188
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=20.55 E-value=50 Score=26.35 Aligned_cols=41 Identities=15% Similarity=0.179 Sum_probs=31.5
Q ss_pred CCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHH
Q 030946 103 DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKW 157 (168)
Q Consensus 103 ~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w 157 (168)
.++..+++|+-+-. ...++...|++.||.++..++-=...|
T Consensus 137 ~~gG~i~~fsP~ie--------------Qv~~~~~~L~~~gf~~i~~~Evl~R~~ 177 (247)
T PF08704_consen 137 KPGGRICCFSPCIE--------------QVQKTVEALREHGFTDIETVEVLLREW 177 (247)
T ss_dssp EEEEEEEEEESSHH--------------HHHHHHHHHHHTTEEEEEEEEEEEEEE
T ss_pred cCCceEEEECCCHH--------------HHHHHHHHHHHCCCeeeEEEEEEeeEE
Confidence 56788999998865 888999999999998776654333333
No 189
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=20.41 E-value=2.3e+02 Score=22.78 Aligned_cols=21 Identities=14% Similarity=0.159 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHcCccceeEcc
Q 030946 131 RSLIAAYLLVLNGYKNVYHLE 151 (168)
Q Consensus 131 rs~~a~~~L~~~G~~~v~~l~ 151 (168)
.+..++..|...|+++|.++.
T Consensus 137 agrAia~~La~~G~~~V~I~~ 157 (289)
T PRK12548 137 AATAIQVQCALDGAKEITIFN 157 (289)
T ss_pred HHHHHHHHHHHCCCCEEEEEe
Confidence 555688889999998788764
No 190
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=20.12 E-value=80 Score=21.73 Aligned_cols=21 Identities=14% Similarity=-0.097 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHcCccceeEcc
Q 030946 131 RSLIAAYLLVLNGYKNVYHLE 151 (168)
Q Consensus 131 rs~~a~~~L~~~G~~~v~~l~ 151 (168)
-+.++.+.++++|++-|.++.
T Consensus 13 ia~r~~ra~r~~Gi~tv~v~s 33 (110)
T PF00289_consen 13 IAVRIIRALRELGIETVAVNS 33 (110)
T ss_dssp HHHHHHHHHHHTTSEEEEEEE
T ss_pred HHHHHHHHHHHhCCcceeccC
Confidence 688999999999997555543
Done!