BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030947
(168 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FVV|A Chain A, Human Diphosphoinositol Polyphosphate Phosphohydrolase 1
pdb|2Q9P|A Chain A, Human Diphosphoinositol Polyphosphate Phosphohydrolase 1,
Mg-F Complex
Length = 194
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 36/126 (28%)
Query: 37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGM-LFPKGGWEIDESIQEAALR 95
G ++ C+ +R +E + EVL++SS + + P GG E +E AA+R
Sbjct: 38 GYKKRAACLCFR----------SESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVR 87
Query: 96 ETIEEAGV-------TGIVEDQ----------------LAEWPEK-NV-RSRKWMSVAEA 130
E EEAGV GI E+Q L +W + N+ R R+W + +A
Sbjct: 88 EVCEEAGVKGTLGRLVGIFENQERKHRTYVYVLIVTEVLEDWEDSVNIGRKREWFKIEDA 147
Query: 131 RKVCQH 136
KV Q+
Sbjct: 148 IKVLQY 153
>pdb|2DUK|A Chain A, Crystal Structure Of Ms0616
pdb|2DUK|B Chain B, Crystal Structure Of Ms0616
Length = 138
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 11/104 (10%)
Query: 35 QKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGM-LFPKGGWEIDESIQEAA 93
++G ++ C+ +R +E++ EVL++SS + + P GG E +E AA
Sbjct: 6 REGFKKRAACLCFR----------SEQEDEVLLVSSSRYPDQWIVPGGGMEPEEEPGGAA 55
Query: 94 LRETIEEAGVTGIVEDQLAEWPEKNVRSRKWMSVAEARKVCQHW 137
+RE EEAGV G + L + ++ + R ++ V ++ + W
Sbjct: 56 VREVYEEAGVKGKLGRLLGIFENQDRKHRTYVYVLTVTEILEDW 99
>pdb|3MCF|A Chain A, Crystal Structure Of Human Diphosphoinositol Polyphosphate
Phosphohydrolase 3-Alpha
pdb|3MCF|B Chain B, Crystal Structure Of Human Diphosphoinositol Polyphosphate
Phosphohydrolase 3-Alpha
Length = 136
Score = 34.7 bits (78), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 44/102 (43%), Gaps = 28/102 (27%)
Query: 61 EDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTG--------------- 105
ED +LV SS+ + P GG E +E AA+RE EEAGV G
Sbjct: 15 EDEVLLVSSSRYPDRWIVPGGGMEPEEEPGGAAVREVYEEAGVKGKLGRLLGVFEQNQDP 74
Query: 106 ---------IVEDQLAEWPEKNV---RSRKWMSVAEARKVCQ 135
V + L +W E +V R R+W V +A KV Q
Sbjct: 75 EHRTYVYVLTVTELLEDW-EDSVSIGRKREWFKVEDAIKVLQ 115
>pdb|2QJT|B Chain B, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE COMPLEXED
With Amp And Mn Ion From Francisella Tularensis
pdb|2QJT|A Chain A, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE COMPLEXED
With Amp And Mn Ion From Francisella Tularensis
pdb|2R5W|B Chain B, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE FROM
Francisella Tularensis
pdb|2R5W|A Chain A, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE FROM
Francisella Tularensis
Length = 352
Score = 33.5 bits (75), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 11/63 (17%)
Query: 70 SQKGKGM-LFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLA---------EWPEKNV 119
+ GK + P G E DE+I +A +RE EE + + +QLA ++P+++V
Sbjct: 228 AHPGKDLWALPGGFLECDETIAQAIIRELFEETNI-NLTHEQLAIAKRCEKVFDYPDRSV 286
Query: 120 RSR 122
R R
Sbjct: 287 RGR 289
>pdb|1VC8|A Chain A, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1-Ap6a Complex
pdb|1VC8|B Chain B, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1-Ap6a Complex
pdb|1VCD|A Chain A, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1
pdb|1VCD|B Chain B, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1
Length = 126
Score = 33.5 bits (75), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 64 EVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGV 103
EVL++ + G +FPKG E ES++EAA+RE EE GV
Sbjct: 15 EVLLLRDRMGF-WVFPKGHPEPGESLEEAAVREVWEETGV 53
>pdb|3I7U|A Chain A, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|B Chain B, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|C Chain C, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|D Chain D, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7V|A Chain A, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
pdb|3I7V|B Chain B, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
Length = 134
Score = 33.5 bits (75), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 62 DLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLAE 113
D EVL+I + FPKG E E +E A+RE EE GV G + D + E
Sbjct: 14 DGEVLLIKTP-SNVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGE 64
>pdb|2B06|A Chain A, Crystal Structure Of The MuttNUDIX FAMILY PROTEIN FROM
STREPTOCOCCUS Pneumoniae
Length = 155
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 51 CVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQ 110
C+ + L+ ++ + + G FP G E DE+ E+ +RE EE G+T I Q
Sbjct: 13 CLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLT-IQNPQ 71
Query: 111 LA---EWP 115
L WP
Sbjct: 72 LVGIKNWP 79
>pdb|1VC9|A Chain A, Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydrolase
E50q Mutant- Mg2+-atp Complex
pdb|1VC9|B Chain B, Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydrolase
E50q Mutant- Mg2+-atp Complex
Length = 126
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 64 EVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGV 103
EVL++ + G +FPKG E ES++EAA+RE E+ GV
Sbjct: 15 EVLLLRDRMGF-WVFPKGHPEPGESLEEAAVREVWEQTGV 53
>pdb|3EXQ|A Chain A, Crystal Structure Of A Nudix Family Hydrolase From
Lactobacillus Brevis
Length = 161
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 75 GMLFPKGGWEIDESIQEAALRETIEEAG--VTGIVEDQLAEWPEKNVRSRK 123
G FP G E+ E AA+RE EE G ++G+ EW + + + RK
Sbjct: 38 GHSFPGGHVEVGEPCATAAIREVFEETGLRLSGVTFCGTCEWFDDDRQHRK 88
>pdb|3U53|A Chain A, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|B Chain B, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|C Chain C, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|D Chain D, Crystal Structure Of Human Ap4a Hydrolase
Length = 155
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 43 GCIPYRYKCVKQSLDINEEDLEVLVISSQKG-KGMLFPKGGWEIDESIQEAALRETIEEA 101
G I +R +C+ +D N +E L++ + G PKG E E E ALRET EEA
Sbjct: 7 GLIIFR-RCLIPKVDNNA--IEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRETQEEA 63
Query: 102 GV 103
G+
Sbjct: 64 GI 65
>pdb|2QKM|B Chain B, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|D Chain D, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|F Chain F, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|H Chain H, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
Length = 266
Score = 30.4 bits (67), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%)
Query: 65 VLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGV 103
VLV + G FPKG + DES + A+RE EE G
Sbjct: 112 VLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGF 150
>pdb|2A6T|A Chain A, Crystal Structure Of S.Pombe Mrna Decapping Enzyme Dcp2p
pdb|2A6T|B Chain B, Crystal Structure Of S.Pombe Mrna Decapping Enzyme Dcp2p
Length = 271
Score = 30.4 bits (67), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%)
Query: 65 VLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGV 103
VLV + G FPKG + DES + A+RE EE G
Sbjct: 117 VLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGF 155
>pdb|3DKU|A Chain A, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|B Chain B, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|C Chain C, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|D Chain D, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|E Chain E, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|F Chain F, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|G Chain G, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|H Chain H, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|A Chain A, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|B Chain B, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|C Chain C, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|D Chain D, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|E Chain E, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|F Chain F, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|G Chain G, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|H Chain H, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|I Chain I, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|J Chain J, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|K Chain K, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|L Chain L, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
Length = 153
Score = 30.4 bits (67), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
Query: 79 PKGGWEIDESIQEAALRETIEEAGVTGIVEDQLAEWPEKNVRSRKWMS 126
P G E DE++ EAA RE EE G++ P+ +R +W++
Sbjct: 34 PAGHLEADETLVEAAARELWEETGISAQ--------PQHFIRMHQWIA 73
>pdb|2ZON|G Chain G, Crystal Structure Of Electron Transfer Complex Of Nitrite
Reductase With Cytochrome C
Length = 87
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 64 EVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEA 101
+ L+ + KGKG + P+GG DE+ AA+ ++ A
Sbjct: 49 DALLATVLKGKGAMPPRGGTAADEATLRAAVAYMMDAA 86
>pdb|3CNG|A Chain A, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
pdb|3CNG|B Chain B, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
pdb|3CNG|C Chain C, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
pdb|3CNG|D Chain D, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
Length = 189
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 19/76 (25%)
Query: 30 HLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLV----ISSQKGKGMLFPKGGWEI 85
H YQ + +VGCIP E + +VL+ I+ +GK L P G E
Sbjct: 32 HTIHYQNPK-VIVGCIP-------------EWENKVLLCKRAIAPYRGKWTL-PAGFXEN 76
Query: 86 DESIQEAALRETIEEA 101
+E++ + A RET+EEA
Sbjct: 77 NETLVQGAARETLEEA 92
>pdb|2JVB|A Chain A, Solution Structure Of Catalytic Domain Of Ydcp2
Length = 146
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 58 INEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAG--VTGIVEDQLAEWP 115
NE ++L++ + FP+G DE+ + +RE EE G +T ++D ++
Sbjct: 12 FNENLSKILLVQGTESDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTDYIDDN--QFI 69
Query: 116 EKNVRSRKW 124
E+N++ + +
Sbjct: 70 ERNIQGKNY 78
>pdb|3FJY|A Chain A, Crystal Structure Of A Probable Mutt1 Protein From
Bifidobacterium Adolescentis
pdb|3FJY|B Chain B, Crystal Structure Of A Probable Mutt1 Protein From
Bifidobacterium Adolescentis
Length = 364
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 61 EDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAG 102
+ +EV ++ K +PKG E +E+ + AA+RE EE G
Sbjct: 36 DSIEVCIVHRPKYDDWSWPKGKLEQNETHRHAAVREIGEETG 77
>pdb|1XSA|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (E63a Mutant)
pdb|1XSB|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (E63a Mutant) In Complex With Atp. No Atp
Restraints Included
pdb|1XSC|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (e63a Mutant) In Complex With Atp
Length = 153
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-KGMLFPKGGWEIDESIQEAALRETI 98
+ G I +R +C+ +D N +E L++ + G PKG E E E ALR T
Sbjct: 9 RACGLIIFR-RCLIPKVDNNA--IEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRATQ 65
Query: 99 EEAGV 103
EEAG+
Sbjct: 66 EEAGI 70
>pdb|2KDV|A Chain A, Solution Structure Of Rna Pyrophosphohydrolase Rpph From
Escherichia Coli
Length = 164
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 78 FPKGGWEIDESIQEAALRETIEEAGVT 104
FP+GG ES ++A RE EE G++
Sbjct: 35 FPQGGINPGESAEQAMYRELFEEVGLS 61
>pdb|1DT4|A Chain A, Crystal Structure Of Nova-1 Kh3 K-Homology Rna-Binding
Domain
Length = 73
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 10 IVSLVTPENVVGNLVSRTGRHLQRYQKGRRQVVGC 44
+V + PEN+VG ++ + G+ L YQ ++ GC
Sbjct: 4 VVEIAVPENLVGAILGKGGKTLVEYQ----ELTGC 34
>pdb|3H95|A Chain A, Crystal Structure Of The Nudix Domain Of Nudt6
Length = 199
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 58 INEEDLEVLVISSQ-KGKGM-LFPKGGWEIDESIQEAALRETIEEAGV 103
+E ++LV+ + K K M FP G E +E I + A+RE EE G+
Sbjct: 34 FDESTRKILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGI 81
>pdb|1PPX|A Chain A, Solution Structure Of The Mutt Pyrophosphohydrolase
Complexed With Mg(2+) And 8-Oxo-Dgmp, A Tightly-Bound
Product
pdb|1PUN|A Chain A, Solution Structure Of The Mutt Pyrophosphohydrolase
Complexed With Mg(2+) And 8-Oxo-Dgmp, A Tightly-Bound
Product
pdb|1PUQ|A Chain A, Solution Structure Of The Mutt Pyrophosphohydrolase
Complexed With Mg(2+) And 8-Oxo-Dgmp, A Tightly-Bound
Product
pdb|1PUS|A Chain A, Solution Structure Of The Mutt Pyrophosphohydrolase
Complexed With Mg(2+) And 8-Oxo-Dgmp, A Tightly-Bound
Product
pdb|1MUT|A Chain A, Nmr Study Of Mutt Enzyme, A Nucleoside Triphosphate
Pyrophosphohydrolase
pdb|1TUM|A Chain A, Mutt Pyrophosphohydrolase-Metal-Nucleotide-Metal Complex,
Nmr, 16 Structures
pdb|3A6S|A Chain A, Crystal Structure Of The Mutt Protein
pdb|3A6S|B Chain B, Crystal Structure Of The Mutt Protein
pdb|3A6T|A Chain A, Crystal Structure Of Mutt-8-Oxo-Dgmp Complex
pdb|3A6U|A Chain A, Crystal Structure Of Mutt-8-Oxo-Dgmp-Mn(Ii) Complex
pdb|3A6V|A Chain A, Crystal Structure Of The Mutt Protein In Mn(Ii) Bound Holo
Form
pdb|3A6V|B Chain B, Crystal Structure Of The Mutt Protein In Mn(Ii) Bound Holo
Form
Length = 129
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 58 INEEDLEVLVI----SSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVT----GIVED 109
I E+ E+ + + + FP G E+ E+ ++A +RE EE G+T + E
Sbjct: 11 IRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSLFEK 70
Query: 110 QLAEWPEKNVRSRKWM 125
E+P++++ W+
Sbjct: 71 LEYEFPDRHITLWFWL 86
>pdb|3O8S|A Chain A, Crystal Structure Of An Adp-Ribose Pyrophosphatase
(Ssu98_1448) From Streptococcus Suis 89-1591 At 2.27 A
Resolution
Length = 206
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
Query: 58 INEEDLEVLVISSQKGKGMLFPKGGW-EIDESIQEAALRETIEEAGV 103
I +ED +LV Q+ G+ GGW ++D+S+++ ++E EEAG+
Sbjct: 77 IFQEDKILLV---QENDGLWSLPGGWCDVDQSVKDNVVKEVKEEAGL 120
>pdb|3F6A|A Chain A, Crystal Structure Of A Hydrolase, Nudix Family From
Clostridium Perfringens
pdb|3F6A|B Chain B, Crystal Structure Of A Hydrolase, Nudix Family From
Clostridium Perfringens
Length = 159
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 64 EVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVT 104
+VL+ +K K L G E++E +EA +RE EEAG+
Sbjct: 18 KVLLHLHKKAKKXLPLGGHIEVNELPEEACIREAKEEAGLN 58
>pdb|1DTJ|A Chain A, Crystal Structure Of Nova-2 Kh3 K-Homology Rna-Binding
Domain
pdb|1DTJ|B Chain B, Crystal Structure Of Nova-2 Kh3 K-Homology Rna-Binding
Domain
pdb|1DTJ|C Chain C, Crystal Structure Of Nova-2 Kh3 K-Homology Rna-Binding
Domain
pdb|1DTJ|D Chain D, Crystal Structure Of Nova-2 Kh3 K-Homology Rna-Binding
Domain
Length = 76
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 10 IVSLVTPENVVGNLVSRTGRHLQRYQK 36
+V + PEN+VG ++ + G+ L YQ+
Sbjct: 4 LVEMAVPENLVGAILGKGGKTLVEYQE 30
>pdb|2DVK|A Chain A, Crystal Structure Of Hypothetical Protein From Aeropyrum
Pernix
Length = 188
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 82 GWEIDESIQEAALRETIEEAGVTGIVEDQ 110
GW+ +S+ EAA R + +GV I ED
Sbjct: 99 GWQCAKSLLEAARRNGFKHSGVISIAEDS 127
>pdb|1EC6|A Chain A, Crystal Structure Of Nova-2 Kh3 K-Homology Rna-Binding
Domain Bound To 20-Mer Rna Hairpin
pdb|1EC6|B Chain B, Crystal Structure Of Nova-2 Kh3 K-Homology Rna-Binding
Domain Bound To 20-Mer Rna Hairpin
Length = 87
Score = 26.9 bits (58), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 10 IVSLVTPENVVGNLVSRTGRHLQRYQ 35
+V + PEN+VG ++ + G+ L YQ
Sbjct: 4 LVEIAVPENLVGAILGKGGKTLVEYQ 29
>pdb|1JRK|A Chain A, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
pdb|1JRK|B Chain B, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
pdb|1JRK|C Chain C, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
pdb|1JRK|D Chain D, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
pdb|1K26|A Chain A, Structure Of A Nudix Protein From Pyrobaculum Aerophilum
Solved By The Single Wavelength Anomolous Scattering
Method
pdb|1K26|B Chain B, Structure Of A Nudix Protein From Pyrobaculum Aerophilum
Solved By The Single Wavelength Anomolous Scattering
Method
pdb|1K2E|A Chain A, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum
pdb|1K2E|B Chain B, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum
Length = 156
Score = 26.6 bits (57), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 61 EDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVT--------GIVEDQLA 112
E+ +VL++ ++ ++P G E +E+ EA RE EE G+ GI+++
Sbjct: 10 ENGKVLLVKHKRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGFTYGIIDENAV 69
Query: 113 EWP 115
E P
Sbjct: 70 ERP 72
>pdb|3RBG|A Chain A, Crystal Structure Analysis Of Class-I Mhc Restricted
T-Cell Associated Molecule
pdb|3RBG|B Chain B, Crystal Structure Analysis Of Class-I Mhc Restricted
T-Cell Associated Molecule
pdb|3RBG|C Chain C, Crystal Structure Analysis Of Class-I Mhc Restricted
T-Cell Associated Molecule
pdb|3RBG|D Chain D, Crystal Structure Analysis Of Class-I Mhc Restricted
T-Cell Associated Molecule
Length = 124
Score = 26.6 bits (57), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 22/31 (70%)
Query: 49 YKCVKQSLDINEEDLEVLVISSQKGKGMLFP 79
YKC+ S ++ ++++V+V+++ KG+ +P
Sbjct: 81 YKCLHYSDSVSTKEVKVIVLATMKGEFCRYP 111
>pdb|3SON|A Chain A, Crystal Structure Of A Hypothetical Nudix Hydrolase
(Lmof2365_2679) From Listeria Monocytogenes (Atcc 19115)
At 1.70 A Resolution
pdb|3SON|B Chain B, Crystal Structure Of A Hypothetical Nudix Hydrolase
(Lmof2365_2679) From Listeria Monocytogenes (Atcc 19115)
At 1.70 A Resolution
Length = 149
Score = 26.2 bits (56), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 78 FPKGGWEIDESIQEAALRETIEEAGV 103
F GG E +E+I E A RE+IEE +
Sbjct: 35 FVAGGGEDEEAISETAKRESIEELNL 60
>pdb|2FML|A Chain A, Crystal Structure Of MuttNUDIX FAMILY PROTEIN FROM
ENTEROCOCCUS Faecalis
pdb|2FML|B Chain B, Crystal Structure Of MuttNUDIX FAMILY PROTEIN FROM
ENTEROCOCCUS Faecalis
Length = 273
Score = 26.2 bits (56), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 11/73 (15%)
Query: 61 EDLEVLVISSQKGKGMLF------PKGGWEIDESIQEAALRETIEEAGVTGIVED--QLA 112
+ L+VL+I + KG F P G +ES +++ LRET EE GV E+ QL
Sbjct: 54 DQLKVLLI---QRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQLH 110
Query: 113 EWPEKNVRSRKWM 125
+ + R W+
Sbjct: 111 SFSRPDRDPRGWV 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,583,291
Number of Sequences: 62578
Number of extensions: 166363
Number of successful extensions: 495
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 459
Number of HSP's gapped (non-prelim): 44
length of query: 168
length of database: 14,973,337
effective HSP length: 92
effective length of query: 76
effective length of database: 9,216,161
effective search space: 700428236
effective search space used: 700428236
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)