Query 030947
Match_columns 168
No_of_seqs 155 out of 1545
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 06:57:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030947.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030947hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2839 Diadenosine and diphos 99.8 1.7E-20 3.7E-25 141.3 11.3 111 32-151 1-143 (145)
2 cd03673 Ap6A_hydrolase Diadeno 99.8 1.3E-19 2.9E-24 132.6 10.9 100 39-147 1-130 (131)
3 cd04666 Nudix_Hydrolase_9 Memb 99.8 4.1E-19 8.8E-24 131.3 10.3 91 40-139 1-121 (122)
4 cd03428 Ap4A_hydrolase_human_l 99.8 3.7E-18 7.9E-23 125.5 10.8 98 40-147 3-129 (130)
5 cd04695 Nudix_Hydrolase_36 Mem 99.8 6.1E-18 1.3E-22 125.5 10.5 99 42-149 2-130 (131)
6 PRK09438 nudB dihydroneopterin 99.8 1.4E-17 3E-22 125.8 11.7 101 38-150 6-146 (148)
7 cd03672 Dcp2p mRNA decapping e 99.7 5E-17 1.1E-21 123.5 11.6 86 40-136 2-114 (145)
8 cd04684 Nudix_Hydrolase_25 Con 99.7 4E-17 8.6E-22 119.0 9.8 80 64-143 12-127 (128)
9 cd03674 Nudix_Hydrolase_1 Memb 99.7 6.6E-17 1.4E-21 121.1 11.2 97 39-146 2-136 (138)
10 PF00293 NUDIX: NUDIX domain; 99.7 6.6E-17 1.4E-21 117.9 10.8 97 38-146 1-132 (134)
11 cd04679 Nudix_Hydrolase_20 Mem 99.7 5.7E-17 1.2E-21 118.8 9.6 85 39-135 2-117 (125)
12 cd04680 Nudix_Hydrolase_21 Mem 99.7 6.4E-17 1.4E-21 117.0 9.1 75 63-137 12-112 (120)
13 cd04670 Nudix_Hydrolase_12 Mem 99.7 1E-16 2.2E-21 117.8 10.2 89 40-140 3-120 (127)
14 cd04696 Nudix_Hydrolase_37 Mem 99.7 1.2E-16 2.5E-21 117.3 10.0 91 40-142 3-123 (125)
15 PLN02325 nudix hydrolase 99.7 7.1E-17 1.5E-21 122.4 8.1 95 37-145 7-136 (144)
16 cd04700 DR1025_like DR1025 fro 99.7 1.2E-16 2.6E-21 120.6 9.2 92 37-140 11-132 (142)
17 cd04673 Nudix_Hydrolase_15 Mem 99.7 1.4E-16 3E-21 115.4 8.7 76 64-139 12-120 (122)
18 cd03427 MTH1 MutT homolog-1 (M 99.7 1.6E-16 3.4E-21 117.9 8.8 84 64-147 13-125 (137)
19 cd04664 Nudix_Hydrolase_7 Memb 99.7 2.8E-16 6E-21 115.7 9.8 93 41-143 3-128 (129)
20 cd04672 Nudix_Hydrolase_14 Mem 99.7 2.3E-16 4.9E-21 115.6 9.2 89 39-140 2-119 (123)
21 cd03675 Nudix_Hydrolase_2 Cont 99.7 5.9E-16 1.3E-20 114.5 11.4 82 64-145 12-126 (134)
22 cd03430 GDPMH GDP-mannose glyc 99.7 3.3E-16 7.2E-21 118.6 10.2 91 38-140 11-140 (144)
23 cd04677 Nudix_Hydrolase_18 Mem 99.7 2.1E-16 4.5E-21 116.2 8.8 74 63-136 19-125 (132)
24 cd03671 Ap4A_hydrolase_plant_l 99.7 6.8E-16 1.5E-20 116.8 11.6 56 38-105 2-58 (147)
25 cd04669 Nudix_Hydrolase_11 Mem 99.7 3.1E-16 6.7E-21 115.0 9.3 85 41-137 2-118 (121)
26 PRK15472 nucleoside triphospha 99.7 4.2E-16 9.1E-21 116.8 10.1 81 64-144 16-136 (141)
27 cd04676 Nudix_Hydrolase_17 Mem 99.7 4.5E-16 9.7E-21 113.0 9.8 94 39-144 2-128 (129)
28 cd04667 Nudix_Hydrolase_10 Mem 99.7 3.9E-16 8.6E-21 112.5 9.0 76 64-140 12-108 (112)
29 PRK15434 GDP-mannose mannosyl 99.7 6.3E-16 1.4E-20 119.5 10.7 94 38-143 16-148 (159)
30 cd04689 Nudix_Hydrolase_30 Mem 99.7 6.3E-16 1.4E-20 113.2 9.8 55 39-106 1-55 (125)
31 COG1051 ADP-ribose pyrophospha 99.7 3.8E-16 8.3E-21 118.9 8.7 85 37-134 8-123 (145)
32 cd04687 Nudix_Hydrolase_28 Mem 99.7 5.3E-16 1.2E-20 114.2 9.2 87 39-138 1-126 (128)
33 cd04681 Nudix_Hydrolase_22 Mem 99.7 6.2E-16 1.3E-20 113.7 9.3 83 63-145 13-128 (130)
34 PRK00714 RNA pyrophosphohydrol 99.6 2.2E-15 4.8E-20 115.6 12.0 58 37-106 6-64 (156)
35 cd04671 Nudix_Hydrolase_13 Mem 99.6 4.9E-16 1.1E-20 114.7 8.0 82 41-134 2-111 (123)
36 cd04690 Nudix_Hydrolase_31 Mem 99.6 4.2E-16 9.2E-21 112.7 7.4 74 64-137 13-114 (118)
37 cd04691 Nudix_Hydrolase_32 Mem 99.6 8.1E-16 1.8E-20 112.2 8.6 72 64-135 12-110 (117)
38 cd04688 Nudix_Hydrolase_29 Mem 99.6 1.1E-15 2.3E-20 112.2 9.2 74 64-137 13-122 (126)
39 cd04678 Nudix_Hydrolase_19 Mem 99.6 1E-15 2.3E-20 112.5 8.9 83 39-133 2-117 (129)
40 cd04511 Nudix_Hydrolase_4 Memb 99.6 8.1E-16 1.7E-20 113.9 7.6 89 38-139 12-126 (130)
41 cd04686 Nudix_Hydrolase_27 Mem 99.6 1.4E-15 2.9E-20 113.2 8.2 52 41-105 2-53 (131)
42 cd03424 ADPRase_NUDT5 ADP-ribo 99.6 4.3E-15 9.3E-20 110.3 10.7 87 40-138 3-120 (137)
43 PRK10546 pyrimidine (deoxy)nuc 99.6 3.5E-15 7.5E-20 110.4 10.0 87 64-150 16-129 (135)
44 cd04683 Nudix_Hydrolase_24 Mem 99.6 1.6E-15 3.5E-20 110.0 8.1 71 64-134 12-115 (120)
45 cd04682 Nudix_Hydrolase_23 Mem 99.6 2.6E-15 5.7E-20 109.8 8.1 72 63-134 12-115 (122)
46 cd03429 NADH_pyrophosphatase N 99.6 4.6E-15 1E-19 110.4 9.1 71 63-133 12-107 (131)
47 cd03426 CoAse Coenzyme A pyrop 99.6 6.9E-15 1.5E-19 112.8 8.4 73 61-133 14-118 (157)
48 cd04661 MRP_L46 Mitochondrial 99.6 1.3E-14 2.8E-19 108.2 8.1 77 61-137 11-124 (132)
49 PRK05379 bifunctional nicotina 99.6 3E-14 6.4E-19 122.1 11.1 96 39-147 203-338 (340)
50 cd04693 Nudix_Hydrolase_34 Mem 99.5 1.3E-14 2.9E-19 106.6 7.2 74 63-137 12-117 (127)
51 cd04697 Nudix_Hydrolase_38 Mem 99.5 2.2E-14 4.7E-19 105.8 7.6 77 63-139 12-118 (126)
52 PRK15393 NUDIX hydrolase YfcD; 99.5 5.9E-14 1.3E-18 110.2 10.2 89 63-151 49-169 (180)
53 cd04699 Nudix_Hydrolase_39 Mem 99.5 4.5E-14 9.9E-19 102.9 8.6 72 63-134 13-115 (129)
54 cd04692 Nudix_Hydrolase_33 Mem 99.5 5.1E-14 1.1E-18 106.0 8.6 59 38-105 1-65 (144)
55 PRK10776 nucleoside triphospha 99.5 1.4E-13 3.1E-18 100.1 10.0 84 63-146 16-126 (129)
56 PRK11762 nudE adenosine nucleo 99.5 1.5E-13 3.2E-18 108.1 10.3 78 63-140 59-166 (185)
57 cd02885 IPP_Isomerase Isopente 99.5 1.2E-13 2.7E-18 106.5 9.0 88 38-137 29-152 (165)
58 PRK00241 nudC NADH pyrophospha 99.5 1.5E-13 3.2E-18 113.8 9.8 78 63-140 143-245 (256)
59 cd04662 Nudix_Hydrolase_5 Memb 99.5 8.6E-14 1.9E-18 103.9 7.4 57 41-106 2-65 (126)
60 cd03425 MutT_pyrophosphohydrol 99.5 3.5E-13 7.6E-18 96.7 9.2 83 63-145 13-122 (124)
61 TIGR00586 mutt mutator mutT pr 99.5 6.2E-13 1.3E-17 97.0 9.6 82 63-144 16-124 (128)
62 cd02883 Nudix_Hydrolase Nudix 99.4 2.4E-13 5.1E-18 96.6 6.7 74 63-136 12-115 (123)
63 PRK03759 isopentenyl-diphospha 99.4 7.2E-13 1.6E-17 104.2 9.6 89 37-137 32-156 (184)
64 cd04665 Nudix_Hydrolase_8 Memb 99.4 5E-13 1.1E-17 98.6 7.5 45 64-109 12-56 (118)
65 cd04685 Nudix_Hydrolase_26 Mem 99.4 5.5E-13 1.2E-17 99.9 7.7 53 41-105 2-59 (133)
66 cd04694 Nudix_Hydrolase_35 Mem 99.4 1.2E-12 2.5E-17 99.5 8.8 44 63-106 13-61 (143)
67 TIGR00052 nudix-type nucleosid 99.4 6E-13 1.3E-17 105.1 7.4 79 62-140 56-172 (185)
68 PRK10707 putative NUDIX hydrol 99.4 1.5E-12 3.2E-17 103.4 9.5 88 38-135 29-148 (190)
69 PRK10729 nudF ADP-ribose pyrop 99.4 1.3E-12 2.7E-17 104.7 9.2 78 63-140 62-178 (202)
70 TIGR02150 IPP_isom_1 isopenten 99.4 1.4E-12 3.1E-17 100.1 8.5 88 37-138 25-147 (158)
71 cd04663 Nudix_Hydrolase_6 Memb 99.4 1.5E-12 3.3E-17 97.2 7.2 43 62-105 13-55 (126)
72 cd03670 ADPRase_NUDT9 ADP-ribo 99.3 6E-12 1.3E-16 99.7 9.1 44 61-104 47-90 (186)
73 TIGR02705 nudix_YtkD nucleosid 99.3 9.3E-12 2E-16 96.1 9.4 72 64-136 36-130 (156)
74 cd03676 Nudix_hydrolase_3 Memb 99.3 9.3E-12 2E-16 97.2 9.2 96 37-140 30-165 (180)
75 cd04674 Nudix_Hydrolase_16 Mem 99.3 1E-11 2.2E-16 91.7 8.7 43 64-106 16-61 (118)
76 PRK15009 GDP-mannose pyrophosp 99.3 1.9E-11 4.1E-16 97.1 8.9 89 40-140 46-173 (191)
77 PRK08999 hypothetical protein; 99.3 2.1E-11 4.5E-16 102.6 9.6 84 63-146 17-127 (312)
78 COG4119 Predicted NTP pyrophos 99.3 2E-11 4.4E-16 90.7 8.3 109 38-156 2-157 (161)
79 PLN02709 nudix hydrolase 99.3 2.7E-11 5.9E-16 98.3 9.4 46 61-106 49-100 (222)
80 COG0494 MutT NTP pyrophosphohy 99.2 7.1E-11 1.5E-15 85.2 9.6 44 63-106 24-69 (161)
81 PLN03143 nudix hydrolase; Prov 99.1 2.9E-09 6.2E-14 89.7 13.0 45 61-105 141-190 (291)
82 COG2816 NPY1 NTP pyrophosphohy 99.0 3.6E-10 7.8E-15 94.1 5.7 72 64-135 156-252 (279)
83 KOG3084 NADH pyrophosphatase I 99.0 2.8E-10 6.1E-15 95.8 4.8 75 61-135 198-300 (345)
84 PLN02791 Nudix hydrolase homol 98.8 2.4E-08 5.1E-13 93.4 11.2 58 37-105 30-93 (770)
85 PLN02552 isopentenyl-diphospha 98.8 2.2E-08 4.7E-13 82.6 8.5 57 37-105 54-133 (247)
86 KOG3041 Nucleoside diphosphate 98.7 2.4E-07 5.1E-12 73.7 10.3 49 61-109 86-138 (225)
87 KOG3069 Peroxisomal NUDIX hydr 98.6 2.6E-07 5.6E-12 75.2 7.9 72 61-132 56-162 (246)
88 KOG0648 Predicted NUDIX hydrol 98.6 1.1E-07 2.4E-12 79.8 5.7 72 63-134 127-232 (295)
89 cd03431 DNA_Glycosylase_C DNA 98.4 4.4E-06 9.6E-11 59.4 9.5 80 64-143 15-115 (118)
90 KOG4195 Transient receptor pot 98.0 6.3E-06 1.4E-10 66.7 3.9 39 63-101 139-177 (275)
91 KOG2937 Decapping enzyme compl 97.4 3.7E-05 8.1E-10 65.4 0.6 82 38-130 81-189 (348)
92 PLN02839 nudix hydrolase 97.4 0.00036 7.9E-09 60.6 6.4 76 61-136 216-330 (372)
93 PF13869 NUDIX_2: Nucleotide h 97.1 0.0011 2.4E-08 52.7 5.6 70 25-105 28-99 (188)
94 COG1443 Idi Isopentenyldiphosp 96.7 0.0022 4.9E-08 50.3 4.3 89 39-139 33-159 (185)
95 PF14815 NUDIX_4: NUDIX domain 96.5 0.0056 1.2E-07 43.9 4.8 80 62-142 8-112 (114)
96 KOG1689 mRNA cleavage factor I 94.8 0.059 1.3E-06 42.4 4.9 54 38-102 69-122 (221)
97 COG4112 Predicted phosphoester 93.9 0.74 1.6E-05 36.1 9.1 69 64-132 73-186 (203)
98 KOG4548 Mitochondrial ribosoma 91.3 0.93 2E-05 37.7 6.9 42 63-104 139-183 (263)
99 KOG4432 Uncharacterized NUDIX 79.5 2.8 6E-05 36.0 4.0 64 76-139 286-382 (405)
100 KOG4432 Uncharacterized NUDIX 77.9 2.2 4.7E-05 36.6 2.9 33 76-108 81-113 (405)
101 KOG0142 Isopentenyl pyrophosph 73.6 3 6.5E-05 33.7 2.5 49 88-136 104-186 (225)
102 PRK10880 adenine DNA glycosyla 66.4 35 0.00077 29.7 7.8 73 64-143 243-341 (350)
103 KOG4313 Thiamine pyrophosphoki 63.9 15 0.00032 30.9 4.7 45 62-106 147-197 (306)
104 PF14443 DBC1: DBC1 61.6 12 0.00027 27.9 3.6 45 62-106 7-59 (126)
105 PF07026 DUF1317: Protein of u 58.7 21 0.00045 23.2 3.7 25 72-99 20-44 (60)
106 PF03487 IL13: Interleukin-13; 58.3 10 0.00023 22.7 2.2 24 78-101 13-36 (43)
107 KOG2937 Decapping enzyme compl 29.3 13 0.00027 32.3 -0.9 34 73-106 263-296 (348)
108 KOG0648 Predicted NUDIX hydrol 27.8 37 0.00081 28.9 1.6 35 74-109 55-89 (295)
109 COG4111 Uncharacterized conser 25.6 1.6E+02 0.0034 25.0 4.9 50 61-114 35-85 (322)
110 PF14044 NETI: NETI protein 24.5 69 0.0015 20.6 2.0 22 82-105 3-24 (57)
111 TIGR01084 mutY A/G-specific ad 22.1 2.4E+02 0.0052 23.6 5.4 19 63-81 239-261 (275)
112 KOG0753 Mitochondrial fatty ac 21.9 1.3E+02 0.0028 25.9 3.8 59 76-135 254-313 (317)
113 PF12860 PAS_7: PAS fold 20.9 35 0.00077 23.6 0.2 35 61-95 13-47 (115)
No 1
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=99.84 E-value=1.7e-20 Score=141.29 Aligned_cols=111 Identities=51% Similarity=0.929 Sum_probs=94.4
Q ss_pred ccccC-CceeEEEEEEEEeeccccccccccCceEEEEEEEeC-CCceeccceeccCCCCHHHHHHHHHHHHHcCccceec
Q 030947 32 QRYQK-GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVED 109 (168)
Q Consensus 32 ~r~~~-~~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~-~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~ 109 (168)
++|+. ++|+.+|||||+.+ . +..+|||+...+ +..|.+|+|++|++|+..+||.||..||+|+.+...+
T Consensus 1 qry~~~G~r~vagCi~~r~~---~------~~ieVLlvsSs~~~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~l~~ 71 (145)
T KOG2839|consen 1 QRYDPAGFRLVAGCICYRSD---K------EKIEVLLVSSSKKPHRWIVPKGGWEPDESVEEAALRETWEEAGVKGKLGR 71 (145)
T ss_pred CccCCCCcEEEEEeeeeeec---C------cceEEEEEecCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHhCceeeeec
Confidence 47885 99999999999986 1 247999999987 6789999999999999999999999999999987666
Q ss_pred ----------------------------cccccCCCc--eeeEEEEeHhHHHhhcCChhHHHHHHHHHHHHh
Q 030947 110 ----------------------------QLAEWPEKN--VRSRKWMSVAEARKVCQHWWMKEALDRLVMRLT 151 (168)
Q Consensus 110 ----------------------------~~~~~~e~e--~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~~~ 151 (168)
.+..||+.+ .++++|++++|+.+...+..+..++..+...+.
T Consensus 72 ~~~g~~~~~~~~~~~~~k~~~~~l~v~e~le~wp~~~~~~r~r~W~~ledA~~~~~~~~m~~al~e~~~~l~ 143 (145)
T KOG2839|consen 72 LLGGFEDFLSKKHRTKPKGVMYVLAVTEELEDWPESEHEFREREWLKLEDAIELCQHKWMKAALEEFLQFLC 143 (145)
T ss_pred cccchhhccChhhcccccceeehhhhhhhcccChhhhcccceeEEeeHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 234466665 889999999999999989999988888776643
No 2
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.82 E-value=1.3e-19 Score=132.62 Aligned_cols=100 Identities=31% Similarity=0.413 Sum_probs=81.0
Q ss_pred eeEEEEEEEEeeccccccccccCceEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc-------
Q 030947 39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL------- 111 (168)
Q Consensus 39 r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~------- 111 (168)
+..+++|+++.+ + ++.+|||+++++.+.|.||||+++.||++.+||.||++||||+.+.....+
T Consensus 1 ~~~a~~ii~~~~---~------~~~~vLl~~~~~~~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~ 71 (131)
T cd03673 1 VLAAGGVVFRGS---D------GGIEVLLIHRPRGDDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDPLGTIRYWF 71 (131)
T ss_pred CeeEEEEEEEcc---C------CCeEEEEEEcCCCCcccCCCCccCCCCCHHHHHHHHHhhhhCCceEecceEEEEEEec
Confidence 357899999874 2 456999999988889999999999999999999999999999986543300
Q ss_pred -----------cc----------c--CCCceeeEEEEeHhHHHhhcCChhHHHHHHHHH
Q 030947 112 -----------AE----------W--PEKNVRSRKWMSVAEARKVCQHWWMKEALDRLV 147 (168)
Q Consensus 112 -----------~~----------~--~e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~ 147 (168)
.. . ++.+..++.|++++++.+++.++..+.++..++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~ 130 (131)
T cd03673 72 SSSGKRVHKTVHWWLMRALGGEFTPQPDEEVDEVRWLPPDEARDRLSYPNDRELLRAAL 130 (131)
T ss_pred cCCCCCcceEEEEEEEEEcCCCcccCCCCcEEEEEEcCHHHHHHHcCCHhHHHHHHHhh
Confidence 00 0 234667899999999999999999988887764
No 3
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.80 E-value=4.1e-19 Score=131.27 Aligned_cols=91 Identities=44% Similarity=0.658 Sum_probs=73.4
Q ss_pred eEEEEEEEEeeccccccccccCceEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCcccee-ccc-------
Q 030947 40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVE-DQL------- 111 (168)
Q Consensus 40 ~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~-~~~------- 111 (168)
+++|+|+|+.+ + +..+|||+++.+.+.|.||||+++.|||+.+||.||++||||+++... .++
T Consensus 1 ~~~g~v~~~~~---~------~~~~vLLv~~~~~~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~l~~~~~~~ 71 (122)
T cd04666 1 LQAGAIPYRET---G------GEVEVLLVTSRRTGRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRPLGRFEYRK 71 (122)
T ss_pred CEEEEEEEEEc---C------CceEEEEEEecCCCeEECCCCCcCCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeee
Confidence 37899999874 2 356899999887789999999999999999999999999999986544 311
Q ss_pred ----------------------cccCCCceeeEEEEeHhHHHhhcCChhH
Q 030947 112 ----------------------AEWPEKNVRSRKWMSVAEARKVCQHWWM 139 (168)
Q Consensus 112 ----------------------~~~~e~e~~~~~W~~~~e~~~~~~~~~~ 139 (168)
..+++.+..+++|++++++.+++.++++
T Consensus 72 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~ea~~~~~~~~~ 121 (122)
T cd04666 72 RSKNRPPRCEVAVFPLEVTEELDEWPEMHQRKRKWFSPEEAALLVEEPEL 121 (122)
T ss_pred cCCCCCceEEEEEEEEEEeccccCCcccCceEEEEecHHHHHHhcCChhh
Confidence 0113335568999999999999988864
No 4
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.77 E-value=3.7e-18 Score=125.50 Aligned_cols=98 Identities=31% Similarity=0.359 Sum_probs=78.4
Q ss_pred eEEEEEEEEeeccccccccccCceEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc-------c
Q 030947 40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL-------A 112 (168)
Q Consensus 40 ~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~-------~ 112 (168)
..+|+|+|..+ + ++.+|||+++++ +.|.+|||+++.|||+.+||.||++||||+.+.....+ .
T Consensus 3 ~~~g~vi~~~~---~------~~~~vLl~~~~~-~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~ 72 (130)
T cd03428 3 RSAGAIIYRRL---N------NEIEYLLLQASY-GHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLFIVLGFKETLN 72 (130)
T ss_pred eEEEEEEEEec---C------CCceEEEEEccC-CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhhhhccceeEEE
Confidence 47899999875 2 456899999988 89999999999999999999999999999986433310 0
Q ss_pred -----------cc-----------CCCceeeEEEEeHhHHHhhcCChhHHHHHHHHH
Q 030947 113 -----------EW-----------PEKNVRSRKWMSVAEARKVCQHWWMKEALDRLV 147 (168)
Q Consensus 113 -----------~~-----------~e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~ 147 (168)
.| ...+..++.|++++++.+++.++.++.+++++.
T Consensus 73 ~~~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~ 129 (130)
T cd03428 73 YQVRGKLKTVTYFLAELRPDVEVKLSEEHQDYRWLPYEEALKLLTYEDLKAVLDKAH 129 (130)
T ss_pred ccccCcceEEEEEEEEeCCCCccccccceeeEEeecHHHHHHHcCchhHHHHHHHhh
Confidence 00 113677899999999999998998888887653
No 5
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.76 E-value=6.1e-18 Score=125.48 Aligned_cols=99 Identities=25% Similarity=0.224 Sum_probs=77.8
Q ss_pred EEEEEEEeeccccccccccCceEEEEEEEeC--CCceeccceeccCCCCHHHHHHHHHHHHHcCccceec------c---
Q 030947 42 VGCIPYRYKCVKQSLDINEEDLEVLVISSQK--GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVED------Q--- 110 (168)
Q Consensus 42 ~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~--~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~------~--- 110 (168)
+|+|++... + ++.+|||++|.. .|.|.+|||+++.|||+.+||.||++||||+++.... .
T Consensus 2 ~~~v~~~~~---~------~~~~vLl~~r~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~ 72 (131)
T cd04695 2 VSGVLLRSL---D------KETKVLLLKRVKTLGGFWCHVAGGVEAGETAWQAALRELKEETGISLPELYNADYLEQFYE 72 (131)
T ss_pred ceEEEEEEc---C------CCCEEEEEEecCCCCCcEECCcccccCCCCHHHHHHHHHHHHhCCCccccccccceeeEee
Confidence 577777664 2 456899999987 7899999999999999999999999999999864221 0
Q ss_pred --------cc-----------ccCCCceeeEEEEeHhHHHhhcCChhHHHHHHHHHHH
Q 030947 111 --------LA-----------EWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMR 149 (168)
Q Consensus 111 --------~~-----------~~~e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~ 149 (168)
.. ..++.+..+++|++++++.++...+..+.++..+...
T Consensus 73 ~~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~~ 130 (131)
T cd04695 73 ANDNRILMAPVFVGFVPPHQEVVLNHEHTEYRWCSFAEALELAPFPGQRALYDHVWRY 130 (131)
T ss_pred cCCceEEEEEEEEEEecCCCccccCchhcccEecCHHHHHHhcCChhHHHHHHHHHhh
Confidence 00 0023367789999999999999999998888776543
No 6
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.75 E-value=1.4e-17 Score=125.84 Aligned_cols=101 Identities=25% Similarity=0.303 Sum_probs=78.3
Q ss_pred ceeEEEEEEEEeeccccccccccCceEEEEEEEeC-CCceeccceeccCCCCHHHHHHHHHHHHHcCcc--ceecc----
Q 030947 38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTG--IVEDQ---- 110 (168)
Q Consensus 38 ~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~-~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~--~~~~~---- 110 (168)
.+..+++++++.+ ++|||+++.. ++.|.+|||+++.|||+.+||+||++||||+++ .....
T Consensus 6 ~~~~v~~vi~~~~------------~~vLl~~r~~~~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~ 73 (148)
T PRK09438 6 RPVSVLVVIYTPD------------LGVLMLQRADDPDFWQSVTGSLEEGETPAQTAIREVKEETGIDVLAEQLTLIDCQ 73 (148)
T ss_pred CceEEEEEEEeCC------------CeEEEEEecCCCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCccccceeecccc
Confidence 4567888888643 2799998865 578999999999999999999999999999987 21100
Q ss_pred ----------------------c-ccc----------CCCceeeEEEEeHhHHHhhcCChhHHHHHHHHHHHH
Q 030947 111 ----------------------L-AEW----------PEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRL 150 (168)
Q Consensus 111 ----------------------~-~~~----------~e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~~ 150 (168)
. ..| ...|..++.|++++++.++...+.++.+++.+..++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~~ 146 (148)
T PRK09438 74 RSIEYEIFPHWRHRYAPGVTRNTEHWFCLALPHERPVVLTEHLAYQWLDAREAAALTKSWSNAEAIEQLVIRL 146 (148)
T ss_pred cccccccchhhhhccccccCCceeEEEEEecCCCCccccCcccceeeCCHHHHHHHhcChhHHHHHHHHHHHh
Confidence 0 000 112667899999999999999999999998877654
No 7
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.73 E-value=5e-17 Score=123.54 Aligned_cols=86 Identities=24% Similarity=0.305 Sum_probs=66.5
Q ss_pred eEEEEEEEEeeccccccccccCceEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCccceec----------
Q 030947 40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVED---------- 109 (168)
Q Consensus 40 ~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~---------- 109 (168)
..+|+|+++.+ +.+|||+++...+.|.||||+++.|||+.+||.||++||||+.+....
T Consensus 2 p~~gaii~~~~-----------~~~vLLvr~~~~~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~~~~~~~~~~~~~ 70 (145)
T cd03672 2 PVYGAIILNED-----------LDKVLLVKGWKSKSWSFPKGKINKDEDDHDCAIREVYEETGFDISKYIDKDDYIELII 70 (145)
T ss_pred CeeEEEEEeCC-----------CCEEEEEEecCCCCEECCCccCCCCcCHHHHHHHHHHHhhCccceeccccceeeeccc
Confidence 36788888742 248999999877899999999999999999999999999999865311
Q ss_pred --------ccccc---------CCCceeeEEEEeHhHHHhhcCC
Q 030947 110 --------QLAEW---------PEKNVRSRKWMSVAEARKVCQH 136 (168)
Q Consensus 110 --------~~~~~---------~e~e~~~~~W~~~~e~~~~~~~ 136 (168)
..... +..|..+++||++++++++...
T Consensus 71 ~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 114 (145)
T cd03672 71 RGQNVKLYIVPGVPEDTPFEPKTRKEISKIEWFDIKDLPTKKNK 114 (145)
T ss_pred CCcEEEEEEEecCCCCcccCcCChhhhheEEEeeHHHhhhhhhh
Confidence 00000 1236778999999999997643
No 8
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.72 E-value=4e-17 Score=119.00 Aligned_cols=80 Identities=29% Similarity=0.381 Sum_probs=63.5
Q ss_pred EEEEEEEeCC---CceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc--------------------c--------
Q 030947 64 EVLVISSQKG---KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL--------------------A-------- 112 (168)
Q Consensus 64 ~vLLv~r~~~---~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~--------------------~-------- 112 (168)
+|||+++++. +.|.+|||+++.||++.+||.||++||||+++.....+ .
T Consensus 12 ~vLl~~~~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 91 (128)
T cd04684 12 KLLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIGRRLGSASRYFYSPDGDYDAHHLCVFYDARVVG 91 (128)
T ss_pred EEEEEEccCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeecceeeeEEEEEEECCCCCeeccEEEEEEEEEEec
Confidence 8999999874 89999999999999999999999999999986433200 0
Q ss_pred -----ccCCCceeeEEEEeHhHHHhhcCChhHHHHH
Q 030947 113 -----EWPEKNVRSRKWMSVAEARKVCQHWWMKEAL 143 (168)
Q Consensus 113 -----~~~e~e~~~~~W~~~~e~~~~~~~~~~~~~l 143 (168)
..+..+..++.|++++++......+....++
T Consensus 92 ~~~~~~~~~~e~~~~~W~~~~~l~~~~~~~~~~~a~ 127 (128)
T cd04684 92 GALPVQEPGEDSHGAAWLPLDEAIERLLSPLVLWAV 127 (128)
T ss_pred CccccCCCCCCceeeEEECHHHhhccCCCHHHHHhh
Confidence 0112355789999999999888888766554
No 9
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.72 E-value=6.6e-17 Score=121.12 Aligned_cols=97 Identities=22% Similarity=0.213 Sum_probs=73.8
Q ss_pred eeEEEEEEEEeeccccccccccCceEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCccceec---------
Q 030947 39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVED--------- 109 (168)
Q Consensus 39 r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~--------- 109 (168)
+..+++++++. +..+|||+++++.+.|.+|||+++.||++.+||.||++||||+++....
T Consensus 2 ~~~~~~~v~~~-----------~~~~vLLv~r~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~ 70 (138)
T cd03674 2 HFTASAFVVNP-----------DRGKVLLTHHRKLGSWLQPGGHIDPDESLLEAALRELREETGIELLGLRPLSVLVDLD 70 (138)
T ss_pred cEEEEEEEEeC-----------CCCeEEEEEEcCCCcEECCceecCCCCCHHHHHHHHHHHHHCCCcccceeccccccce
Confidence 56788888864 2258999999888899999999999999999999999999999642110
Q ss_pred c----------------c--cc---------c--CCCceeeEEEEeHhHHHhhcCChhHHHHHHHH
Q 030947 110 Q----------------L--AE---------W--PEKNVRSRKWMSVAEARKVCQHWWMKEALDRL 146 (168)
Q Consensus 110 ~----------------~--~~---------~--~e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~ 146 (168)
. + .+ . +..|..++.|++++++..+...+..+.++.++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~i~~~ 136 (138)
T cd03674 71 VHPIDGHPKRGVPGHLHLDLRFLAVAPADDVAPPKSDESDAVRWFPLDELASLELPEDVRRLVEKA 136 (138)
T ss_pred eEeecCCCCCCCCCcEEEEEEEEEEccCccccCCCCCcccccEEEcHHHhhhccCCHHHHHHHHHH
Confidence 0 0 00 0 22356679999999998776677777777654
No 10
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.72 E-value=6.6e-17 Score=117.94 Aligned_cols=97 Identities=27% Similarity=0.347 Sum_probs=76.4
Q ss_pred ceeEEEEEEEEeeccccccccccCceEEEEEEEeCC-----CceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc-
Q 030947 38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL- 111 (168)
Q Consensus 38 ~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~-----~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~- 111 (168)
+|..+++++++.+ + +|||+++.+. +.|.+|||+++.||++.+||+||+.||||++.......
T Consensus 1 ~~~~v~~ii~~~~----------~--~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~~~~~ 68 (134)
T PF00293_consen 1 WRRAVGVIIFNED----------G--KVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVSPLELLG 68 (134)
T ss_dssp EEEEEEEEEEETT----------T--EEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEEEEEEEE
T ss_pred CCCEEEEEEEeCC----------c--EEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccceecccccce
Confidence 3678999999853 2 8999999865 68999999999999999999999999999986333200
Q ss_pred -----------------------------cccCCCceeeEEEEeHhHHHhhcCChhHHHHHHHH
Q 030947 112 -----------------------------AEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRL 146 (168)
Q Consensus 112 -----------------------------~~~~e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~ 146 (168)
......+...+.|++++++.++..+.....++..+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~i~~~ 132 (134)
T PF00293_consen 69 LFSYPSPSGDPEGEIVIFFIAELPSEQSEIQPQDEEISEVKWVPPDELLELLLNGRIRKIIPWL 132 (134)
T ss_dssp EEEEEETTTESSEEEEEEEEEEEEEEESECHTTTTTEEEEEEEEHHHHHHHHHTTHHHHHHHHH
T ss_pred eeeecccCCCcccEEEEEEEEEEeCCccccCCCCccEEEEEEEEHHHhhhchhCcchhhhhccc
Confidence 00122277889999999999998888776666554
No 11
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.71 E-value=5.7e-17 Score=118.81 Aligned_cols=85 Identities=18% Similarity=0.248 Sum_probs=65.4
Q ss_pred eeEEEEEEEEeeccccccccccCceEEEEEEEeC---CCceeccceeccCCCCHHHHHHHHHHHHHcCccceecccc---
Q 030947 39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLA--- 112 (168)
Q Consensus 39 r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~~--- 112 (168)
|+.+++++++.+ .+|||+++.+ .+.|.+|||+++.|||+.+||.||++||||+++.....+.
T Consensus 2 ~~~~~~~i~~~~------------~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~~~~~~~~ 69 (125)
T cd04679 2 RVGCGAAILRDD------------GKLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHSTRLLCVVD 69 (125)
T ss_pred ceEEEEEEECCC------------CEEEEEEecCCCCCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcccceEEEEEe
Confidence 677888888742 3899999864 4789999999999999999999999999999865433100
Q ss_pred -------------cc------------CCCceeeEEEEeHhHHHhhcC
Q 030947 113 -------------EW------------PEKNVRSRKWMSVAEARKVCQ 135 (168)
Q Consensus 113 -------------~~------------~e~e~~~~~W~~~~e~~~~~~ 135 (168)
.| ...+..+++||+++++++.+.
T Consensus 70 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~~l~~~l~ 117 (125)
T cd04679 70 HIIEEPPQHWVAPVYLAENFSGEPRLMEPDKLLELGWFALDALPQPLT 117 (125)
T ss_pred ecccCCCCeEEEEEEEEeecCCccccCCCccccEEEEeCHHHCCchhH
Confidence 00 122567899999999987544
No 12
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.71 E-value=6.4e-17 Score=116.99 Aligned_cols=75 Identities=27% Similarity=0.386 Sum_probs=60.4
Q ss_pred eEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCccc-eeccc------------------------c-ccCC
Q 030947 63 LEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGI-VEDQL------------------------A-EWPE 116 (168)
Q Consensus 63 ~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~-~~~~~------------------------~-~~~e 116 (168)
+++||++++..+.|.+|||+++.|||+.+||.||++||||+.+. ....+ . ..++
T Consensus 12 ~~vLL~~r~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 91 (120)
T cd04680 12 GRVLLVRHTYGPGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAELLGVYYHSASGSWDHVIVFRARADTQPVIRPS 91 (120)
T ss_pred CeEEEEEECCCCcEeCCCCcCCCCCCHHHHHHHHHHHHHCCccccccceEEEEecCCCCCceEEEEEEecccCCCccCCc
Confidence 38999999877799999999999999999999999999999887 44410 0 1123
Q ss_pred CceeeEEEEeHhHHHhhcCCh
Q 030947 117 KNVRSRKWMSVAEARKVCQHW 137 (168)
Q Consensus 117 ~e~~~~~W~~~~e~~~~~~~~ 137 (168)
.|..+++||+++++++.+..+
T Consensus 92 ~E~~~~~w~~~~~l~~~~~~~ 112 (120)
T cd04680 92 HEISEARFFPPDALPEPTTPA 112 (120)
T ss_pred ccEEEEEEECHHHCcccCChH
Confidence 467789999999999865543
No 13
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.70 E-value=1e-16 Score=117.77 Aligned_cols=89 Identities=25% Similarity=0.327 Sum_probs=66.4
Q ss_pred eEEEEEEEEeeccccccccccCceEEEEEEEeC--CCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc------
Q 030947 40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK--GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL------ 111 (168)
Q Consensus 40 ~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~--~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~------ 111 (168)
+.+++++++.+ .+|||++++. .+.|.+|||+++.|||+.+||.||++||||+.+.....+
T Consensus 3 ~~~~~~v~~~~------------~~vLl~~r~~~~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~ 70 (127)
T cd04670 3 VGVGGLVLNEK------------NEVLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVSVVGFRHAH 70 (127)
T ss_pred eEEEEEEEcCC------------CeEEEEEccCCCCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCcceeEEEEEEecC
Confidence 46777777632 3899999887 689999999999999999999999999999987544300
Q ss_pred ---------------cc------cCCCceeeEEEEeHhHHHhhcCChhHH
Q 030947 112 ---------------AE------WPEKNVRSRKWMSVAEARKVCQHWWMK 140 (168)
Q Consensus 112 ---------------~~------~~e~e~~~~~W~~~~e~~~~~~~~~~~ 140 (168)
.. .+..+..+++|++++++........+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~~~ 120 (127)
T cd04670 71 PGAFGKSDLYFICRLKPLSFDINFDTSEIAAAKWMPLEEYISQPITSEVN 120 (127)
T ss_pred CCCcCceeEEEEEEEccCcCcCCCChhhhheeEEEcHHHHhcchhHHHHH
Confidence 00 012255678999999997765444443
No 14
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.70 E-value=1.2e-16 Score=117.32 Aligned_cols=91 Identities=22% Similarity=0.214 Sum_probs=68.3
Q ss_pred eEEEEEEEEeeccccccccccCceEEEEEEEeC-CCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc-------
Q 030947 40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL------- 111 (168)
Q Consensus 40 ~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~-~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~------- 111 (168)
+.+++++++.+ .+|||+++.. .+.|.+|||+++.|||+.+||.||++||||+++.....+
T Consensus 3 ~~v~~~i~~~~------------~~iLL~r~~~~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~ 70 (125)
T cd04696 3 VTVGALIYAPD------------GRILLVRTTKWRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKFAMVQEAIF 70 (125)
T ss_pred cEEEEEEECCC------------CCEEEEEccCCCCcEeCCceeccCCCCHHHHHHHHHHHHhCCcccccceEEEEEEec
Confidence 46777777632 3799998754 589999999999999999999999999999976433200
Q ss_pred ------------c-c---------cCCCceeeEEEEeHhHHHhhcCChhHHHH
Q 030947 112 ------------A-E---------WPEKNVRSRKWMSVAEARKVCQHWWMKEA 142 (168)
Q Consensus 112 ------------~-~---------~~e~e~~~~~W~~~~e~~~~~~~~~~~~~ 142 (168)
. + -+..+...++||+++++.++...+..++.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~ 123 (125)
T cd04696 71 SEEFHKPAHFVLFDFFARTDGTEVTPNEEIVEWEWVTPEEALDYPLNSFTRLL 123 (125)
T ss_pred cCCCCCccEEEEEEEEEEecCCcccCCcccceeEEECHHHHhcCCCCHHHHHH
Confidence 0 0 02226678999999999998777655544
No 15
>PLN02325 nudix hydrolase
Probab=99.69 E-value=7.1e-17 Score=122.43 Aligned_cols=95 Identities=20% Similarity=0.197 Sum_probs=67.6
Q ss_pred CceeEEEEEEEEeeccccccccccCceEEEEEEEeC---CCceeccceeccCCCCHHHHHHHHHHHHHcCccceecccc-
Q 030947 37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLA- 112 (168)
Q Consensus 37 ~~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~~- 112 (168)
..++.+++++++. .+|||++|.+ .+.|.+|||+++.|||+.+||.||++||||+++...+.+.
T Consensus 7 ~p~~~v~~vi~~~-------------~~vLL~rr~~~~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~~~l~~ 73 (144)
T PLN02325 7 IPRVAVVVFLLKG-------------NSVLLGRRRSSIGDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKIELLTV 73 (144)
T ss_pred CCeEEEEEEEEcC-------------CEEEEEEecCCCCCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEE
Confidence 3456677777653 2899999875 4789999999999999999999999999999875544100
Q ss_pred ------------------------cc---C----CCceeeEEEEeHhHHHhhcCChhHHHHHHH
Q 030947 113 ------------------------EW---P----EKNVRSRKWMSVAEARKVCQHWWMKEALDR 145 (168)
Q Consensus 113 ------------------------~~---~----e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~ 145 (168)
.. + ..+..+++||++++++..+.++ .+.++..
T Consensus 74 ~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~e~~e~~~~~W~~~d~Lp~~~~~p-~~~~~~~ 136 (144)
T PLN02325 74 TNNVFLEEPKPSHYVTVFMRAVLADPSQVPQNLEPEKCYGWDWYEWDNLPEPLFWP-LEKLVGS 136 (144)
T ss_pred ecceeecCCCCcEEEEEEEEEEECCCCCCCCcCCchhcCceEEEChHHCChhhhHH-HHHHHHc
Confidence 00 0 0123568999999999855444 3344433
No 16
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.69 E-value=1.2e-16 Score=120.61 Aligned_cols=92 Identities=20% Similarity=0.257 Sum_probs=70.6
Q ss_pred CceeEEEEEEEEeeccccccccccCceEEEEEEEeC---CCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc--
Q 030947 37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL-- 111 (168)
Q Consensus 37 ~~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~-- 111 (168)
.+...+++++++.+ .+|||++++. .+.|.||||++++|||+.+||+||++||||+++.....+
T Consensus 11 ~~~~av~~vv~~~~------------~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~ 78 (142)
T cd04700 11 VEARAAGAVILNER------------NDVLLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKFLGT 78 (142)
T ss_pred eeeeeEEEEEEeCC------------CcEEEEEEcCCCCCCeEECCceecCCCCCHHHHHHHHHHHhhCceeeccEEEEE
Confidence 35568888888743 2799998764 378999999999999999999999999999986544310
Q ss_pred -------------ccc------------CCCceeeEEEEeHhHHHhhcCChhHH
Q 030947 112 -------------AEW------------PEKNVRSRKWMSVAEARKVCQHWWMK 140 (168)
Q Consensus 112 -------------~~~------------~e~e~~~~~W~~~~e~~~~~~~~~~~ 140 (168)
..| ...|..+++||+++++.+++....+.
T Consensus 79 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~g~i~ 132 (142)
T cd04700 79 YLGRFDDGVLVLRHVWLAEPEGQTLAPKFTDEIAEASFFSREDVAQLYAQGQLR 132 (142)
T ss_pred EEEEcCCCcEEEEEEEEEEecCCccccCCCCCEEEEEEECHHHhhhcccccccc
Confidence 000 12367789999999999998776554
No 17
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.69 E-value=1.4e-16 Score=115.36 Aligned_cols=76 Identities=25% Similarity=0.382 Sum_probs=59.6
Q ss_pred EEEEEEEeC---CCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc------c----------------------
Q 030947 64 EVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL------A---------------------- 112 (168)
Q Consensus 64 ~vLLv~r~~---~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~------~---------------------- 112 (168)
+|||+++.+ .+.|.+|||+++.||++.+||.||++||||+++.....+ .
T Consensus 12 ~vLl~~r~~~~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (122)
T cd04673 12 RVLLVRRANPPDAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVGRLLTVVDVIERDAAGRVEFHYVLIDFLCRYLG 91 (122)
T ss_pred EEEEEEEcCCCCCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEeeeceeEEEEEEeeccCCCccceEEEEEEEEEEeCC
Confidence 799999875 478999999999999999999999999999986433300 0
Q ss_pred --ccCCCceeeEEEEeHhHHHhhcCChhH
Q 030947 113 --EWPEKNVRSRKWMSVAEARKVCQHWWM 139 (168)
Q Consensus 113 --~~~e~e~~~~~W~~~~e~~~~~~~~~~ 139 (168)
..+..|..++.|++++++.++...+.+
T Consensus 92 ~~~~~~~E~~~~~w~~~~el~~~~~~~~~ 120 (122)
T cd04673 92 GEPVAGDDALDARWVPLDELAALSLTEST 120 (122)
T ss_pred CcccCCcccceeEEECHHHHhhCcCCccc
Confidence 012336678999999999998766543
No 18
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.68 E-value=1.6e-16 Score=117.91 Aligned_cols=84 Identities=25% Similarity=0.208 Sum_probs=66.6
Q ss_pred EEEEEEEeC---CCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc---------------------c----ccC
Q 030947 64 EVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL---------------------A----EWP 115 (168)
Q Consensus 64 ~vLLv~r~~---~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~---------------------~----~~~ 115 (168)
+|||+++.. .+.|.+|||+++.||++.+||+||++||||+++.....+ . ...
T Consensus 13 ~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 92 (137)
T cd03427 13 KVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLKLVGIIKFPFPGEEERYGVFVFLATEFEGEPL 92 (137)
T ss_pred EEEEEEecCCCCCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecceEEEEEEEEcCCCCcEEEEEEEEECCcccccC
Confidence 899999986 588999999999999999999999999999986543300 0 001
Q ss_pred -CCceeeEEEEeHhHHHhhcCChhHHHHHHHHH
Q 030947 116 -EKNVRSRKWMSVAEARKVCQHWWMKEALDRLV 147 (168)
Q Consensus 116 -e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~ 147 (168)
..+...++|+++++++.+...+..+..++.+.
T Consensus 93 ~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~ 125 (137)
T cd03427 93 KESEEGILDWFDIDDLPLLPMWPGDREWLPLML 125 (137)
T ss_pred CCCccccceEEcHhhcccccCCCCcHHHHHHHh
Confidence 33556789999999998877777777777665
No 19
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.68 E-value=2.8e-16 Score=115.74 Aligned_cols=93 Identities=27% Similarity=0.243 Sum_probs=70.7
Q ss_pred EEEEEEEEeeccccccccccCceEEEEEEEeC--CCceeccceeccCCCCHHHHHHHHHHHHHcCccceec---ccc---
Q 030947 41 VVGCIPYRYKCVKQSLDINEEDLEVLVISSQK--GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVED---QLA--- 112 (168)
Q Consensus 41 ~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~--~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~---~~~--- 112 (168)
++.+++++.. ++.+|||++|.+ ++.|.+|||+++.||++.+||.||++||||+.+.... ...
T Consensus 3 ~~~v~~~~~~----------~~~~vLL~~r~~~~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~ 72 (129)
T cd04664 3 SVLVVPYRLT----------GEGRVLLLRRSDKYAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLDRGASIA 72 (129)
T ss_pred EEEEEEEEeC----------CCCEEEEEEeCCCCCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhheEEEeeccccc
Confidence 4566777652 345899999987 6899999999999999999999999999999852221 000
Q ss_pred --cc-----------------------CCCceeeEEEEeHhHHHhhcCChhHHHHH
Q 030947 113 --EW-----------------------PEKNVRSRKWMSVAEARKVCQHWWMKEAL 143 (168)
Q Consensus 113 --~~-----------------------~e~e~~~~~W~~~~e~~~~~~~~~~~~~l 143 (168)
.+ ...|..++.|++++++.+++.+++++.++
T Consensus 73 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~ 128 (129)
T cd04664 73 FVEFTDNGRVWTEHPFAFHLPSDAVVTLDWEHDAFEWVPPEEAAALLLWESNRRAW 128 (129)
T ss_pred ccccCCCceEEEEeEEEEEcCCCCcccCCccccccEecCHHHHHHHHcChhhhhhh
Confidence 00 11255679999999999999888776654
No 20
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.68 E-value=2.3e-16 Score=115.57 Aligned_cols=89 Identities=13% Similarity=0.161 Sum_probs=68.2
Q ss_pred eeEEEEEEEEeeccccccccccCceEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc-------
Q 030947 39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL------- 111 (168)
Q Consensus 39 r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~------- 111 (168)
++.+++++++. .+|||+++++.+.|.+|||+++.|||+.+||.||++||||+.+.....+
T Consensus 2 ~~~v~~~i~~~-------------~~vLL~~~~~~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~~~~~~~~~~~~~~ 68 (123)
T cd04672 2 KVDVRAAIFKD-------------GKILLVREKSDGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVRKLAAVDDRNK 68 (123)
T ss_pred cceEEEEEEEC-------------CEEEEEEEcCCCcEeCCccccCCCCCHHHHHHHHHHHHhCCeeeEeEEEEEecccc
Confidence 45677777763 2899999988899999999999999999999999999999986433200
Q ss_pred --------cc--------------cCCCceeeEEEEeHhHHHhhcCChhHH
Q 030947 112 --------AE--------------WPEKNVRSRKWMSVAEARKVCQHWWMK 140 (168)
Q Consensus 112 --------~~--------------~~e~e~~~~~W~~~~e~~~~~~~~~~~ 140 (168)
.. .+..+..+++|++++++.++.....++
T Consensus 69 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~l~~~~~~~ 119 (123)
T cd04672 69 HHPPPQPYQVYKLFFLCEILGGEFKPNIETSEVGFFALDDLPPLSEKRNTE 119 (123)
T ss_pred ccCCCCceEEEEEEEEEEecCCcccCCCceeeeEEECHHHCcccccCCcch
Confidence 00 012366789999999998877555443
No 21
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.68 E-value=5.9e-16 Score=114.55 Aligned_cols=82 Identities=22% Similarity=0.320 Sum_probs=61.1
Q ss_pred EEEEEEEeCC--CceeccceeccCCCCHHHHHHHHHHHHHcCccceecc---------------c-ccc-----------
Q 030947 64 EVLVISSQKG--KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQ---------------L-AEW----------- 114 (168)
Q Consensus 64 ~vLLv~r~~~--~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~---------------~-~~~----------- 114 (168)
++||+++.+. +.|.+|||+++.||++.+||.||++||||+++..... . ..|
T Consensus 12 ~vLlv~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 91 (134)
T cd03675 12 RFLLVEEETDGGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTALLGIYQWTAPDSDTTYLRFAFAAELLEHLPDQ 91 (134)
T ss_pred EEEEEEEccCCCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccceEEEEEEeecCCCCeeEEEEEEEEEECCCCCCC
Confidence 8999998753 5899999999999999999999999999998643220 0 000
Q ss_pred -CCCceeeEEEEeHhHHHhhc---CChhHHHHHHH
Q 030947 115 -PEKNVRSRKWMSVAEARKVC---QHWWMKEALDR 145 (168)
Q Consensus 115 -~e~e~~~~~W~~~~e~~~~~---~~~~~~~~l~~ 145 (168)
.+.+..++.||+++++.++. ..+.+...+..
T Consensus 92 ~~~~e~~~~~w~~~~el~~~~~~~~~~~~~~~i~~ 126 (134)
T cd03675 92 PLDSGIVRAHWLTLEEILALAARLRSPLVLRCIED 126 (134)
T ss_pred CCCCCceeeEEEeHHHHHhhhhhhcCchHHHHHHH
Confidence 12356789999999999986 24444444443
No 22
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.68 E-value=3.3e-16 Score=118.58 Aligned_cols=91 Identities=16% Similarity=0.149 Sum_probs=68.0
Q ss_pred ceeEEEEEEEEeeccccccccccCceEEEEEEEeC---CCceeccceeccCCCCHHHHHHHHHHHHHcCcccee--cc--
Q 030947 38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVE--DQ-- 110 (168)
Q Consensus 38 ~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~--~~-- 110 (168)
.++.+++|+++.+ ++|||++|.+ +|.|.||||+++.|||+.+||+||++||||+++... ..
T Consensus 11 p~v~v~~vI~~~~------------g~vLl~~R~~~p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~l~ 78 (144)
T cd03430 11 PLVSIDLIVENED------------GQYLLGKRTNRPAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAELLG 78 (144)
T ss_pred CeEEEEEEEEeCC------------CeEEEEEccCCCCCCcEECCCceecCCCCHHHHHHHHHHHHHCCCcccccceEEE
Confidence 3567888888642 3899999864 578999999999999999999999999999987543 10
Q ss_pred -cc------------------------c------cCCCceeeEEEEeHhHHHhh-cCChhHH
Q 030947 111 -LA------------------------E------WPEKNVRSRKWMSVAEARKV-CQHWWMK 140 (168)
Q Consensus 111 -~~------------------------~------~~e~e~~~~~W~~~~e~~~~-~~~~~~~ 140 (168)
.. . -+..+..+++|+++++++.. ..++..+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~ 140 (144)
T cd03430 79 VFEHFYDDNFFGDDFSTHYVVLGYVLKLSSNELLLPDEQHSEYQWLTSDELLADDDVHPNTK 140 (144)
T ss_pred EEEEEeccccccCCCccEEEEEEEEEEEcCCcccCCchhccEeEEecHHHHhcCCCcCHHHH
Confidence 00 0 01225678999999999875 3445443
No 23
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.68 E-value=2.1e-16 Score=116.22 Aligned_cols=74 Identities=26% Similarity=0.246 Sum_probs=58.6
Q ss_pred eEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc-------------------------------
Q 030947 63 LEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL------------------------------- 111 (168)
Q Consensus 63 ~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~------------------------------- 111 (168)
.+|||+++...+.|.||||+++.|||+.+||.||++||||+++.....+
T Consensus 19 ~~vLL~~r~~~~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (132)
T cd04677 19 GEVLLQKRSDTGDWGLPGGAMELGESLEETARRELKEETGLEVEELELLGVYSGKEFYVKPNGDDEQYIVTLYYVTKVFG 98 (132)
T ss_pred CCEEEEEecCCCcEECCeeecCCCCCHHHHHHHHHHHHhCCeeeeeEEEEEecCCceeecCCCCcEEEEEEEEEEEeccC
Confidence 3899999887789999999999999999999999999999986432210
Q ss_pred -c-ccCCCceeeEEEEeHhHHHhhcCC
Q 030947 112 -A-EWPEKNVRSRKWMSVAEARKVCQH 136 (168)
Q Consensus 112 -~-~~~e~e~~~~~W~~~~e~~~~~~~ 136 (168)
. ..+..+..+++||++++++.++..
T Consensus 99 ~~~~~~~~e~~~~~W~~~~e~~~~~~~ 125 (132)
T cd04677 99 GKLVPDGDETLELKFFSLDELPELINP 125 (132)
T ss_pred CcccCCCCceeeEEEEChhHCccchhH
Confidence 0 012336678999999999886544
No 24
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.67 E-value=6.8e-16 Score=116.78 Aligned_cols=56 Identities=32% Similarity=0.416 Sum_probs=49.5
Q ss_pred ceeEEEEEEEEeeccccccccccCceEEEEEEEeCC-CceeccceeccCCCCHHHHHHHHHHHHHcCcc
Q 030947 38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-KGMLFPKGGWEIDESIQEAALRETIEEAGVTG 105 (168)
Q Consensus 38 ~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~-~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~ 105 (168)
+|..+++++++.+ ++|||+++.+. +.|.+|||+++.||++.+||.||++||||+++
T Consensus 2 ~~~~v~~ii~~~~------------~~vLL~~r~~~~~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~ 58 (147)
T cd03671 2 YRPNVGVVLFNED------------GKVFVGRRIDTPGAWQFPQGGIDEGEDPEQAALRELEEETGLDP 58 (147)
T ss_pred CCceEEEEEEeCC------------CEEEEEEEcCCCCCEECCcCCCCCCcCHHHHHHHHHHHHHCCCc
Confidence 5678889988742 38999999876 59999999999999999999999999999985
No 25
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.67 E-value=3.1e-16 Score=115.02 Aligned_cols=85 Identities=26% Similarity=0.333 Sum_probs=63.2
Q ss_pred EEEEEEEEeeccccccccccCceEEEEEEEeCC--CceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc-------
Q 030947 41 VVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG--KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL------- 111 (168)
Q Consensus 41 ~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~--~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~------- 111 (168)
.+++|+++. +++|||+++.+. +.|.||||+++.|||+.+||.||++||||+++.....+
T Consensus 2 ~~~~ii~~~------------~~~vLL~~r~~~~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~~~~~~~~~~~~~~ 69 (121)
T cd04669 2 RASIVIIND------------QGEILLIRRIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEIFLIVNQNG 69 (121)
T ss_pred ceEEEEEeC------------CCEEEEEEEecCCCCcEECCceeccCCCCHHHHHHHHHHHhhCeeEeeeeEEEEEeeCC
Confidence 456777763 238999998754 67999999999999999999999999999987544411
Q ss_pred ---ccc--------------C------CCceeeEEEEeHhHHHhhcCCh
Q 030947 112 ---AEW--------------P------EKNVRSRKWMSVAEARKVCQHW 137 (168)
Q Consensus 112 ---~~~--------------~------e~e~~~~~W~~~~e~~~~~~~~ 137 (168)
..| + +.+..++.||++++++.+...|
T Consensus 70 ~~~~~f~~~~~~g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l~~~p 118 (121)
T cd04669 70 RTEHYFLARVISGKLGLGVGEEFERQSDDNQYHPVWVDLDQLETIPLRP 118 (121)
T ss_pred cEEEEEEEEEECCeecCCCchhhcccCCCCceEEEEEEHHHcccCCCCC
Confidence 000 0 1123468999999999876555
No 26
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.67 E-value=4.2e-16 Score=116.81 Aligned_cols=81 Identities=19% Similarity=0.224 Sum_probs=61.9
Q ss_pred EEEEEEEeC-----CCceeccceeccCCCCHHHHHHHHHHHHHcCccceec-------------c-----------c-cc
Q 030947 64 EVLVISSQK-----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVED-------------Q-----------L-AE 113 (168)
Q Consensus 64 ~vLLv~r~~-----~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~-------------~-----------~-~~ 113 (168)
+|||+||.. +|.|.+|||+++.|||+.+||.||++||||+++.... . + ..
T Consensus 16 ~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (141)
T PRK15472 16 AYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLLLTEITPWTFRDDIRTKTYADGRKEEIYMIYLI 95 (141)
T ss_pred EEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCceeeeeeccccccccceeEEecCCCceeEEEEEEE
Confidence 899999864 2789999999999999999999999999998752211 0 0 00
Q ss_pred c----------CCCceeeEEEEeHhHHHhhcCChhHHHHHH
Q 030947 114 W----------PEKNVRSRKWMSVAEARKVCQHWWMKEALD 144 (168)
Q Consensus 114 ~----------~e~e~~~~~W~~~~e~~~~~~~~~~~~~l~ 144 (168)
+ +..|..+++||+++++.++...+..+..+.
T Consensus 96 ~~~~~~~~~~~~~~E~~~~~w~~~~el~~l~~~~~~~~~~~ 136 (141)
T PRK15472 96 FDCVSANRDVKINEEFQDYAWVKPEDLVHYDLNVATRKTLR 136 (141)
T ss_pred EEeecCCCcccCChhhheEEEccHHHhccccccHHHHHHHH
Confidence 0 122567899999999999877776666654
No 27
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.67 E-value=4.5e-16 Score=113.04 Aligned_cols=94 Identities=21% Similarity=0.187 Sum_probs=71.9
Q ss_pred eeEEEEEEEEeeccccccccccCceEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCccceecc--------
Q 030947 39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQ-------- 110 (168)
Q Consensus 39 r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~-------- 110 (168)
+..+++++++. +.++||++|...+.|.||||+++.||++.+||.||++||||+++.....
T Consensus 2 ~~~v~~ii~~~------------~~~vLl~~r~~~~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~ 69 (129)
T cd04676 2 LPGVTAVVRDD------------EGRVLLIRRSDNGLWALPGGAVEPGESPADTAVREVREETGLDVEVTGLVGIYTGPV 69 (129)
T ss_pred cceEEEEEECC------------CCeEEEEEecCCCcEECCeeccCCCCCHHHHHHHHHHHHhCceeEeeEEEEEeeccc
Confidence 34567777653 2389999998889999999999999999999999999999997643220
Q ss_pred --c--------c-----c----------cCCCceeeEEEEeHhHHHhhcCChhHHHHHH
Q 030947 111 --L--------A-----E----------WPEKNVRSRKWMSVAEARKVCQHWWMKEALD 144 (168)
Q Consensus 111 --~--------~-----~----------~~e~e~~~~~W~~~~e~~~~~~~~~~~~~l~ 144 (168)
. . . .+..+..+++|++++++..+..++.++.+++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~~~~~~~~~~~~ 128 (129)
T cd04676 70 HVVTYPNGDVRQYLDITFRCRVVGGELRVGDDESLDVAWFDPDGLPPLLMHPSMRLRID 128 (129)
T ss_pred ceeecCCCCcEEEEEEEEEEEeeCCeecCCCCceeEEEEEChhhCccccCCHhHHHHhc
Confidence 0 0 0 0233566789999999999888887776653
No 28
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.67 E-value=3.9e-16 Score=112.55 Aligned_cols=76 Identities=24% Similarity=0.311 Sum_probs=60.2
Q ss_pred EEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCccceecccc---------------------ccCCCceeeE
Q 030947 64 EVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLA---------------------EWPEKNVRSR 122 (168)
Q Consensus 64 ~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~~---------------------~~~e~e~~~~ 122 (168)
+|||+++.+ +.|.+|||+++.||++.+||.||++||||+.+.....+. ..+..+...+
T Consensus 12 ~vLlv~r~~-~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~ 90 (112)
T cd04667 12 RVLLVRKSG-SRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLYLFHVDGGSTRHHVFVASVPPSAQPKPSNEIADC 90 (112)
T ss_pred EEEEEEcCC-CcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccceEEEEEEeCCCEEEEEEEEEcCCcCCCCCchheeEE
Confidence 899999865 899999999999999999999999999999864333110 0123366789
Q ss_pred EEEeHhHHHhhcCChhHH
Q 030947 123 KWMSVAEARKVCQHWWMK 140 (168)
Q Consensus 123 ~W~~~~e~~~~~~~~~~~ 140 (168)
+|++++++.++...+..+
T Consensus 91 ~W~~~~el~~~~~~~~~~ 108 (112)
T cd04667 91 RWLSLDALGDLNASAATR 108 (112)
T ss_pred EEecHHHhhhcccchhhh
Confidence 999999999987766443
No 29
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.67 E-value=6.3e-16 Score=119.53 Aligned_cols=94 Identities=16% Similarity=0.151 Sum_probs=68.2
Q ss_pred ceeEEEEEEEEeeccccccccccCceEEEEEEEeC---CCceeccceeccCCCCHHHHHHHHHHHHHcCcccee--cc--
Q 030947 38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVE--DQ-- 110 (168)
Q Consensus 38 ~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~--~~-- 110 (168)
..+.+++++++. .++|||++|.+ .+.|.||||+++.|||+.+||+||++||||+++... ..
T Consensus 16 ~~~~v~~vI~~~------------~g~VLL~kR~~~~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~~~~~~~ 83 (159)
T PRK15434 16 PLISLDFIVENS------------RGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYG 83 (159)
T ss_pred ceEEEEEEEECC------------CCEEEEEEccCCCCCCcEECCceecCCCCCHHHHHHHHHHHHHCCccccccceEEE
Confidence 456777887653 24899999874 378999999999999999999999999999985321 10
Q ss_pred -----cc---------------cc-----------CCCceeeEEEEeHhHHHhhc-CChhHHHHH
Q 030947 111 -----LA---------------EW-----------PEKNVRSRKWMSVAEARKVC-QHWWMKEAL 143 (168)
Q Consensus 111 -----~~---------------~~-----------~e~e~~~~~W~~~~e~~~~~-~~~~~~~~l 143 (168)
.. .| .+.++.+++|+++++++.+. .++..+..+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~g~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~ 148 (159)
T PRK15434 84 VWQHFYDDNFSGTDFTTHYVVLGFRLRVAEEDLLLPDEQHDDYRWLTPDALLASDNVHANSRAYF 148 (159)
T ss_pred EEEeecccccCCCccceEEEEEEEEEEecCCcccCChHHeeEEEEEeHHHhhhccccCHHHHHHh
Confidence 00 00 11257789999999999874 445444443
No 30
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.66 E-value=6.3e-16 Score=113.24 Aligned_cols=55 Identities=25% Similarity=0.174 Sum_probs=48.0
Q ss_pred eeEEEEEEEEeeccccccccccCceEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCccc
Q 030947 39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGI 106 (168)
Q Consensus 39 r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~ 106 (168)
++.+++++++. ++|||+++...+.|.+|||+++.|||+.+||.||++||||+++.
T Consensus 1 ~~~~~~vi~~~-------------~~vLlv~~~~~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~ 55 (125)
T cd04689 1 HLRARAIVRAG-------------NKVLLARVIGQPHYFLPGGHVEPGETAENALRRELQEELGVAVS 55 (125)
T ss_pred CeEEEEEEEeC-------------CEEEEEEecCCCCEECCCCcCCCCCCHHHHHHHHHHHHhCceee
Confidence 35677888753 28999999887899999999999999999999999999999754
No 31
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.66 E-value=3.8e-16 Score=118.91 Aligned_cols=85 Identities=26% Similarity=0.298 Sum_probs=66.2
Q ss_pred CceeEEEEEEEEeeccccccccccCceEEEEEEEeCC---CceeccceeccCCCCHHHHHHHHHHHHHcCccceeccccc
Q 030947 37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG---KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLAE 113 (168)
Q Consensus 37 ~~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~---~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~~~ 113 (168)
.....+++++.+.. +|||++|.+. |.|.||||+++.|||+.+||.||++||||+++...+++..
T Consensus 8 ~p~~~v~~~i~~~~-------------~iLLvrR~~~p~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~~~~~v 74 (145)
T COG1051 8 TPLVAVGALIVRNG-------------RILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLELLAV 74 (145)
T ss_pred CcceeeeEEEEeCC-------------EEEEEEecCCCCCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcccceeEEEE
Confidence 34567788887642 8999999864 7899999999999999999999999999999765551100
Q ss_pred --------------------c--------CCCceeeEEEEeHhHHHhhc
Q 030947 114 --------------------W--------PEKNVRSRKWMSVAEARKVC 134 (168)
Q Consensus 114 --------------------~--------~e~e~~~~~W~~~~e~~~~~ 134 (168)
. +..+...+.||++++++.+.
T Consensus 75 ~~~~~rd~r~~~v~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~l~~~~ 123 (145)
T COG1051 75 FDDPGRDPRGHHVSFLFFAAEPEGELLAGDGDDAAEVGWFPLDELPELP 123 (145)
T ss_pred ecCCCCCCceeEEEEEEEEEecCCCcccCChhhHhhcceecHhHccccc
Confidence 0 11145678999999999864
No 32
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.66 E-value=5.3e-16 Score=114.20 Aligned_cols=87 Identities=22% Similarity=0.346 Sum_probs=65.3
Q ss_pred eeEEEEEEEEeeccccccccccCceEEEEEEEeCC--CceeccceeccCCCCHHHHHHHHHHHHHcCccceec------c
Q 030947 39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG--KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVED------Q 110 (168)
Q Consensus 39 r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~--~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~------~ 110 (168)
|+.+++|+++.+ +|||+++.+. +.|.+|||+++.|||+.+||.||++||||+.+.... .
T Consensus 1 r~~a~~iv~~~~-------------~vLl~~r~~~~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~~~~~~~~~ 67 (128)
T cd04687 1 RNSAKAVIIKND-------------KILLIKHHDDGGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPLLFVREY 67 (128)
T ss_pred CcEEEEEEEECC-------------EEEEEEEEcCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccCcEEEEEEE
Confidence 457888888632 8999998643 579999999999999999999999999999864321 0
Q ss_pred c----------------ccc---------------CCCceeeEEEEeHhHHHhhcCChh
Q 030947 111 L----------------AEW---------------PEKNVRSRKWMSVAEARKVCQHWW 138 (168)
Q Consensus 111 ~----------------~~~---------------~e~e~~~~~W~~~~e~~~~~~~~~ 138 (168)
. ..| ++.+..+++|+++++++++..+|.
T Consensus 68 ~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~l~~~~~~p~ 126 (128)
T cd04687 68 IGHNPTSELPGHFHQVELMFECKIKSGTPAKTPSKPDPNQIGVEWLKLKELGDIPLYPS 126 (128)
T ss_pred eccCccccCCCceeEEEEEEEEEECCCCcccccCCCCCCEEeeEEEcHHHhCcccccCC
Confidence 0 000 112345899999999998876653
No 33
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.66 E-value=6.2e-16 Score=113.74 Aligned_cols=83 Identities=24% Similarity=0.306 Sum_probs=61.9
Q ss_pred eEEEEEEEeC---CCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc--------------c----cc-------
Q 030947 63 LEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL--------------A----EW------- 114 (168)
Q Consensus 63 ~~vLLv~r~~---~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~--------------~----~~------- 114 (168)
.+|||++|.. ++.|.+|||+++.||++.+||.||++||||++......+ . .|
T Consensus 13 ~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (130)
T cd04681 13 GELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSYLFSLPNTYPYGGMEYDTLDLFFVCQVDDK 92 (130)
T ss_pred CcEEEEEecCCCCCCcEeCCceeecCCCCHHHHHHHHHHHHhCCcccceeEEEeecceeeeCCceeEEEEEEEEEEeCCC
Confidence 3899999864 479999999999999999999999999999976433300 0 00
Q ss_pred ----CCCceeeEEEEeHhHHH-hhcCChhHHHHHHH
Q 030947 115 ----PEKNVRSRKWMSVAEAR-KVCQHWWMKEALDR 145 (168)
Q Consensus 115 ----~e~e~~~~~W~~~~e~~-~~~~~~~~~~~l~~ 145 (168)
+..+..+++|+++++++ +.+.++..+.+++.
T Consensus 93 ~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~~~~ 128 (130)
T cd04681 93 PIVKAPDDVAELKWVVPQDIELENFAFPSIRQAVER 128 (130)
T ss_pred CCcCChHHhheeEEecHHHCCcccCCcHHHHHHHHh
Confidence 11256678999999985 44566766666654
No 34
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.65 E-value=2.2e-15 Score=115.64 Aligned_cols=58 Identities=29% Similarity=0.347 Sum_probs=50.8
Q ss_pred CceeEEEEEEEEeeccccccccccCceEEEEEEEeCC-CceeccceeccCCCCHHHHHHHHHHHHHcCccc
Q 030947 37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-KGMLFPKGGWEIDESIQEAALRETIEEAGVTGI 106 (168)
Q Consensus 37 ~~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~-~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~ 106 (168)
.++..+++++++.+ ++|||+++.+. +.|.+|||+++.||++.+||.||++||||+.+.
T Consensus 6 ~~~~~v~~~i~~~~------------g~vLL~~r~~~~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~ 64 (156)
T PRK00714 6 GYRPNVGIILLNRQ------------GQVFWGRRIGQGHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPE 64 (156)
T ss_pred CCCCeEEEEEEecC------------CEEEEEEEcCCCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCcc
Confidence 46788999998753 38999999764 889999999999999999999999999999763
No 35
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.65 E-value=4.9e-16 Score=114.75 Aligned_cols=82 Identities=26% Similarity=0.297 Sum_probs=61.4
Q ss_pred EEEEEEEEeeccccccccccCceEEEEEEEeC---CCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc------
Q 030947 41 VVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL------ 111 (168)
Q Consensus 41 ~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~------ 111 (168)
++++++++. +++|||+++.+ .+.|.+|||+++.||++.+||.||++||||+++.....+
T Consensus 2 ~~~~vv~~~------------~~~vLl~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~ 69 (123)
T cd04671 2 IVAAVILNN------------QGEVLLIQEAKRSCRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPTTLLSVEEQG 69 (123)
T ss_pred EEEEEEEcC------------CCEEEEEEecCCCCCCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecceEEEEEccC
Confidence 467777753 23899999864 468999999999999999999999999999987544311
Q ss_pred ----------ccc---------CCCceeeEEEEeHhHHHhhc
Q 030947 112 ----------AEW---------PEKNVRSRKWMSVAEARKVC 134 (168)
Q Consensus 112 ----------~~~---------~e~e~~~~~W~~~~e~~~~~ 134 (168)
... ++.+..+++||++++++..+
T Consensus 70 ~~~~~~~f~a~~~~g~~~~~~~~~~e~~~~~W~~~~el~~~~ 111 (123)
T cd04671 70 GSWFRFVFTGNITGGDLKTEKEADSESLQARWYSNKDLPLPL 111 (123)
T ss_pred CeEEEEEEEEEEeCCeEccCCCCCcceEEEEEECHHHCCCcc
Confidence 000 12345689999999995433
No 36
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.65 E-value=4.2e-16 Score=112.67 Aligned_cols=74 Identities=20% Similarity=0.267 Sum_probs=57.7
Q ss_pred EEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCccce--ecccc--------------------------ccC
Q 030947 64 EVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIV--EDQLA--------------------------EWP 115 (168)
Q Consensus 64 ~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~--~~~~~--------------------------~~~ 115 (168)
++||+++++.+.|.||||++++||++.+||.||++||||++... ...+. ..+
T Consensus 13 ~vLl~~r~~~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 92 (118)
T cd04690 13 RVLLVRKRGTDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSLEYLGTFRAPAANEPGVDVRATVYVAELTGEPVP 92 (118)
T ss_pred eEEEEEECCCCcEECCCCccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEecccccCCCcEEEEEEEEEcccCCcCC
Confidence 89999998888999999999999999999999999999998655 33110 002
Q ss_pred CCceeeEEEEeHhHHHhhcCCh
Q 030947 116 EKNVRSRKWMSVAEARKVCQHW 137 (168)
Q Consensus 116 e~e~~~~~W~~~~e~~~~~~~~ 137 (168)
..+..++.|++++++......|
T Consensus 93 ~~e~~~~~W~~~~e~~~~~~~~ 114 (118)
T cd04690 93 AAEIEEIRWVDYDDPADDRLAP 114 (118)
T ss_pred CchhhccEEecHHHccccccCc
Confidence 2356678999999986654444
No 37
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.64 E-value=8.1e-16 Score=112.18 Aligned_cols=72 Identities=29% Similarity=0.419 Sum_probs=55.8
Q ss_pred EEEEEEEeC-----CCceeccceeccCCCCHHHHHHHHHHHHHcCccceecc-------------ccc-----c----CC
Q 030947 64 EVLVISSQK-----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQ-------------LAE-----W----PE 116 (168)
Q Consensus 64 ~vLLv~r~~-----~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~-------------~~~-----~----~e 116 (168)
+|||++|.. .+.|.||||+++.||++.+||.||++||||+++..... +.. + ..
T Consensus 12 ~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (117)
T cd04691 12 KVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYTYLCSLYHPTSELQLLHYYVVTFWQGEIPA 91 (117)
T ss_pred EEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccceEEEEEeccCCCeEEEEEEEEEEecCCCCc
Confidence 899999863 47899999999999999999999999999998532220 000 0 22
Q ss_pred CceeeEEEEeHhHHHhhcC
Q 030947 117 KNVRSRKWMSVAEARKVCQ 135 (168)
Q Consensus 117 ~e~~~~~W~~~~e~~~~~~ 135 (168)
.|..++.||++++++....
T Consensus 92 ~E~~~~~W~~~~~l~~~~~ 110 (117)
T cd04691 92 QEAAEVHWMTANDIVLASE 110 (117)
T ss_pred ccccccEEcCHHHcchhhh
Confidence 3667899999999987543
No 38
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.64 E-value=1.1e-15 Score=112.16 Aligned_cols=74 Identities=26% Similarity=0.282 Sum_probs=58.5
Q ss_pred EEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc------------------c---------cc--
Q 030947 64 EVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL------------------A---------EW-- 114 (168)
Q Consensus 64 ~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~------------------~---------~~-- 114 (168)
+|||+++.+.+.|.+|||+++.||++.+||.||++||||+++.....+ . ..
T Consensus 13 ~vLl~~~~~~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 92 (126)
T cd04688 13 KLLVQKNPDETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRLLGVVENIFTYNGKPGHEIEFYYLVTLLDESLYQ 92 (126)
T ss_pred EEEEEEeCCCCeEECCCccccCCCCHHHHHHHHHHHHhCCceecceeeEEEEEeeccCCcccEEEEEEEEEEeCCCcccc
Confidence 899999887789999999999999999999999999999976433200 0 00
Q ss_pred -------CCCceeeEEEEeHhHHHhhcCCh
Q 030947 115 -------PEKNVRSRKWMSVAEARKVCQHW 137 (168)
Q Consensus 115 -------~e~e~~~~~W~~~~e~~~~~~~~ 137 (168)
++.+..++.|++++++..+...|
T Consensus 93 ~~~~~~~~~~e~~~~~W~~~~~l~~~~~~p 122 (126)
T cd04688 93 QDIEILEEEGEKIVFRWIPIDELKEIKLYP 122 (126)
T ss_pred cccceeccCCCEEEEEEeeHHHcccCccCC
Confidence 12467789999999998765554
No 39
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.64 E-value=1e-15 Score=112.50 Aligned_cols=83 Identities=28% Similarity=0.320 Sum_probs=63.9
Q ss_pred eeEEEEEEEEeeccccccccccCceEEEEEEEe---CCCceeccceeccCCCCHHHHHHHHHHHHHcCccceecccc---
Q 030947 39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQ---KGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLA--- 112 (168)
Q Consensus 39 r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~---~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~~--- 112 (168)
+..+++++++.+ .++||++|. ..+.|.+|||+++.|||+.+||.||++||||+++.....+.
T Consensus 2 ~~~v~~ii~~~~------------~~iLl~~r~~~~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~~~~~~~~ 69 (129)
T cd04678 2 RVGVGVFVLNPK------------GKVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGLHIENVQFLTVTN 69 (129)
T ss_pred ceEEEEEEECCC------------CeEEEEeccCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccceEEEEEEe
Confidence 567888888743 389999988 36899999999999999999999999999999865433110
Q ss_pred -------------cc----------C----CCceeeEEEEeHhHHHhh
Q 030947 113 -------------EW----------P----EKNVRSRKWMSVAEARKV 133 (168)
Q Consensus 113 -------------~~----------~----e~e~~~~~W~~~~e~~~~ 133 (168)
.| . ..+..+++|++++++.++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~ 117 (129)
T cd04678 70 DVFEEEGKHYVTIFVKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPSV 117 (129)
T ss_pred EEeCCCCcEEEEEEEEEEeCCCCcccCCCCCceeCceEEeCHHHCCCc
Confidence 00 0 123456899999999986
No 40
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.63 E-value=8.1e-16 Score=113.90 Aligned_cols=89 Identities=25% Similarity=0.234 Sum_probs=65.6
Q ss_pred ceeEEEEEEEEeeccccccccccCceEEEEEEEe---CCCceeccceeccCCCCHHHHHHHHHHHHHcCccceecccc--
Q 030947 38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQ---KGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLA-- 112 (168)
Q Consensus 38 ~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~---~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~~-- 112 (168)
.+..+++|+++. .+|||+++. ..+.|.+|||+++.||++.+||.||++||||+.+.....+.
T Consensus 12 ~~~~v~~ii~~~-------------~~vLL~kr~~~~~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~~~~~~~~~~ 78 (130)
T cd04511 12 PKIIVGCVPEWE-------------GKVLLCRRAIEPRHGFWTLPAGFMENGETTEQGALRETWEEAGARVEIDGLYAVY 78 (130)
T ss_pred CcEEEEEEEecC-------------CEEEEEEecCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCEEEeeeEEEEE
Confidence 456777777753 279999986 34789999999999999999999999999999875443110
Q ss_pred --------------------ccCCCceeeEEEEeHhHHHh-hcCChhH
Q 030947 113 --------------------EWPEKNVRSRKWMSVAEARK-VCQHWWM 139 (168)
Q Consensus 113 --------------------~~~e~e~~~~~W~~~~e~~~-~~~~~~~ 139 (168)
..+..+..+++|+++++++. .+.++.+
T Consensus 79 ~~~~~~~~~~~f~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~l~~~~~ 126 (130)
T cd04511 79 SVPHISQVYMFYRARLLDLDFAPGPESLEVRLFTEEEIPWDELAFPTV 126 (130)
T ss_pred ecCCceEEEEEEEEEEcCCcccCCcchhceEEECHHHCCchhcccccc
Confidence 01233566789999999973 3444433
No 41
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.62 E-value=1.4e-15 Score=113.16 Aligned_cols=52 Identities=31% Similarity=0.422 Sum_probs=46.1
Q ss_pred EEEEEEEEeeccccccccccCceEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCcc
Q 030947 41 VVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTG 105 (168)
Q Consensus 41 ~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~ 105 (168)
.+++|+++.. +|||+++.+.+.|.||||+++.||++.+||.||++||||+.+
T Consensus 2 ~~~~ii~~~~-------------~vLLv~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~ 53 (131)
T cd04686 2 AVRAIILQGD-------------KILLLYTKRYGDYKFPGGGVEKGEDHIEGLIRELQEETGATN 53 (131)
T ss_pred cEEEEEEECC-------------EEEEEEEcCCCcEECccccCCCCCCHHHHHHHHHHHHHCCcc
Confidence 4677777632 899999987789999999999999999999999999999975
No 42
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.62 E-value=4.3e-15 Score=110.30 Aligned_cols=87 Identities=23% Similarity=0.206 Sum_probs=66.0
Q ss_pred eEEEEEEEEeeccccccccccCceEEEEEEEeC----CCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc----
Q 030947 40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL---- 111 (168)
Q Consensus 40 ~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~----~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~---- 111 (168)
..+++++++.+ .++||+++.+ ++.|.+|||+++.||++.+||.||++||||+.+.....+
T Consensus 3 ~~v~v~~~~~~------------~~iLl~~~~~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~ 70 (137)
T cd03424 3 DAVAVLPYDDD------------GKVVLVRQYRPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDLEKLGSFY 70 (137)
T ss_pred CEEEEEEEcCC------------CeEEEEEeeecCCCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccceEEEeeEe
Confidence 35667777642 4899998753 357999999999999999999999999999987432200
Q ss_pred -----------------------cccCCCceeeEEEEeHhHHHhhcCChh
Q 030947 112 -----------------------AEWPEKNVRSRKWMSVAEARKVCQHWW 138 (168)
Q Consensus 112 -----------------------~~~~e~e~~~~~W~~~~e~~~~~~~~~ 138 (168)
..+.+.|..+++|++++++.+++....
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~ 120 (137)
T cd03424 71 PSPGFSDERIHLFLAEDLSPGEEGLLDEGEDIEVVLVPLDEALELLADGE 120 (137)
T ss_pred cCCcccCccEEEEEEEcccccccCCCCCCCeeEEEEecHHHHHHHHHcCC
Confidence 011234678899999999999886654
No 43
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.62 E-value=3.5e-15 Score=110.39 Aligned_cols=87 Identities=22% Similarity=0.245 Sum_probs=67.3
Q ss_pred EEEEEEEeC----CCceeccceeccCCCCHHHHHHHHHHHHHcCccceec--------------ccccc---------CC
Q 030947 64 EVLVISSQK----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVED--------------QLAEW---------PE 116 (168)
Q Consensus 64 ~vLLv~r~~----~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~--------------~~~~~---------~e 116 (168)
+|||++|.. .|.|.||||+++.||++.+||.||++||||+++.... .+..| ..
T Consensus 16 ~vLL~~R~~~~~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (135)
T PRK10546 16 KILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIEATVGEYVASHQREVSGRRIHLHAWHVPDFHGELQA 95 (135)
T ss_pred EEEEEEccCCCCCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCccccceeEEEEEEecCCcEEEEEEEEEEEecCcccc
Confidence 899999864 3789999999999999999999999999999865332 00111 11
Q ss_pred CceeeEEEEeHhHHHhhcCChhHHHHHHHHHHHH
Q 030947 117 KNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRL 150 (168)
Q Consensus 117 ~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~~ 150 (168)
.+...++|++++++.++...+.++.+++.+....
T Consensus 96 ~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~~ 129 (135)
T PRK10546 96 HEHQALVWCTPEEALRYPLAPADIPLLEAFMALR 129 (135)
T ss_pred cccceeEEcCHHHcccCCCCcCcHHHHHHHHHhh
Confidence 1456789999999999877787888887766653
No 44
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.62 E-value=1.6e-15 Score=110.03 Aligned_cols=71 Identities=25% Similarity=0.330 Sum_probs=54.5
Q ss_pred EEEEEEEeC----CCceeccceeccCCCCHHHHHHHHHHHHHcCccc--eecc--------------c------ccc---
Q 030947 64 EVLVISSQK----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGI--VEDQ--------------L------AEW--- 114 (168)
Q Consensus 64 ~vLLv~r~~----~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~--~~~~--------------~------~~~--- 114 (168)
+|||++|.+ .+.|.+|||+++.||++.+||.||++||||+.+. .... + ..+
T Consensus 12 ~vLL~~r~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 91 (120)
T cd04683 12 EVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDLRLAHTMHRRTEDIESRIGLFFTVRRWSGE 91 (120)
T ss_pred EEEEEEccCCCCCCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEEecCCCCceEEEEEEEEEeecCc
Confidence 899999874 4689999999999999999999999999999864 2110 0 000
Q ss_pred ----CCCceeeEEEEeHhHHHhhc
Q 030947 115 ----PEKNVRSRKWMSVAEARKVC 134 (168)
Q Consensus 115 ----~e~e~~~~~W~~~~e~~~~~ 134 (168)
+..+..+++|+++++++..+
T Consensus 92 ~~~~~~~e~~~~~W~~~~~l~~~~ 115 (120)
T cd04683 92 PRNCEPDKCAELRWFPLDALPDDT 115 (120)
T ss_pred cccCCCCcEeeEEEEchHHCcchh
Confidence 12256679999999987754
No 45
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.61 E-value=2.6e-15 Score=109.75 Aligned_cols=72 Identities=24% Similarity=0.125 Sum_probs=55.7
Q ss_pred eEEEEEEEeC------CCceeccceeccCCCCHHHHHHHHHHHHHcCccceec-----cc--------------------
Q 030947 63 LEVLVISSQK------GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVED-----QL-------------------- 111 (168)
Q Consensus 63 ~~vLLv~r~~------~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~-----~~-------------------- 111 (168)
++|||++|.. +|.|.||||+++.||++.+||.||++||||+++.... ..
T Consensus 12 g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 91 (122)
T cd04682 12 GRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRIPWFRVYPSASPPGTEHVFVVPLTARE 91 (122)
T ss_pred CEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCcccccccceeEecccCCCCceEEEEEEEEecCC
Confidence 4899999864 2789999999999999999999999999999864222 00
Q ss_pred -cccCCCceeeEEEEeHhHHHhhc
Q 030947 112 -AEWPEKNVRSRKWMSVAEARKVC 134 (168)
Q Consensus 112 -~~~~e~e~~~~~W~~~~e~~~~~ 134 (168)
......+..+++|++++++.+..
T Consensus 92 ~~~~~~~E~~~~~W~~~~el~~~~ 115 (122)
T cd04682 92 DAILFGDEGQALRLMTVEEFLAHE 115 (122)
T ss_pred CccccCchhheeecccHHHHhhcc
Confidence 00123356789999999997754
No 46
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.60 E-value=4.6e-15 Score=110.37 Aligned_cols=71 Identities=23% Similarity=0.258 Sum_probs=56.7
Q ss_pred eEEEEEEEeC--CCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccccc-----------------------cCCC
Q 030947 63 LEVLVISSQK--GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLAE-----------------------WPEK 117 (168)
Q Consensus 63 ~~vLLv~r~~--~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~~~-----------------------~~e~ 117 (168)
.+|||++++. .+.|.+|||+++.||++.+||.||++||||+++.....+.. ....
T Consensus 12 ~~vLL~~r~~~~~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 91 (131)
T cd03429 12 DRILLARQPRFPPGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNIRYVGSQPWPFPSSLMLGFTAEADSGEIVVDDD 91 (131)
T ss_pred CEEEEEEecCCCCCcCcCCcccccCCCCHHHHHhhhhhhccCceeeeeEEEeecCCCCCceEEEEEEEEEcCCcccCCch
Confidence 5899999875 58899999999999999999999999999998754441110 0122
Q ss_pred ceeeEEEEeHhHHHhh
Q 030947 118 NVRSRKWMSVAEARKV 133 (168)
Q Consensus 118 e~~~~~W~~~~e~~~~ 133 (168)
+..++.|++++++.++
T Consensus 92 E~~~~~w~~~~el~~~ 107 (131)
T cd03429 92 ELEDARWFSRDEVRAA 107 (131)
T ss_pred hhhccEeecHHHHhhc
Confidence 5667999999998884
No 47
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.58 E-value=6.9e-15 Score=112.79 Aligned_cols=73 Identities=22% Similarity=0.194 Sum_probs=56.7
Q ss_pred CceEEEEEEEeC-----CCceeccceeccCC-CCHHHHHHHHHHHHHcCccceecccc---------------------c
Q 030947 61 EDLEVLVISSQK-----GKGMLFPKGGWEID-ESIQEAALRETIEEAGVTGIVEDQLA---------------------E 113 (168)
Q Consensus 61 ~~~~vLLv~r~~-----~~~W~lPgG~ve~g-Et~~~aA~REl~EEtGi~~~~~~~~~---------------------~ 113 (168)
++.+|||++|.. +|.|.||||+++.| |++.+||.||++||||+++.....+. .
T Consensus 14 ~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~ 93 (157)
T cd03426 14 GELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSVEVLGRLPPYYTRSGFVVTPVVGLVPP 93 (157)
T ss_pred CceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccceEEEEECCCccccCCCEEEEEEEEECC
Confidence 346899999874 47899999999999 99999999999999999865433100 0
Q ss_pred -----cCCCceeeEEEEeHhHHHhh
Q 030947 114 -----WPEKNVRSRKWMSVAEARKV 133 (168)
Q Consensus 114 -----~~e~e~~~~~W~~~~e~~~~ 133 (168)
....|..++.|++++++.+.
T Consensus 94 ~~~~~~~~~E~~~~~W~~~~el~~~ 118 (157)
T cd03426 94 PLPLVLNPDEVAEVFEVPLSFLLDP 118 (157)
T ss_pred CCCCCCCHHHhheeEEEcHHHHhCc
Confidence 01125677899999999885
No 48
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.56 E-value=1.3e-14 Score=108.20 Aligned_cols=77 Identities=21% Similarity=0.249 Sum_probs=58.7
Q ss_pred CceEEEEEEEeC--CCceeccceeccCCCCHHHHHHHHHHHHHcCcccee-----c--c------------------ccc
Q 030947 61 EDLEVLVISSQK--GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVE-----D--Q------------------LAE 113 (168)
Q Consensus 61 ~~~~vLLv~r~~--~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~-----~--~------------------~~~ 113 (168)
++.++||+++.+ .+.|.||||+++.|||+.+||.||++||||+.+... . . ...
T Consensus 11 ~~~~~Llvk~~~~~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (132)
T cd04661 11 DDTLVLLVQQKVGSQNHWILPQGKREEGETLRQTAERTLKELCGNNLKAKFYGNAPVGFYKYKYPKAVRNEGIVGAKVFF 90 (132)
T ss_pred cCcEEEEEEeecCCCCeeECCcccccCCCCHHHHHHHHHHHhhCCCceEEEEEecCcEEEEEecCcccccccCcccEEEE
Confidence 445899999875 368999999999999999999999999999965431 0 0 000
Q ss_pred c----------CCCceeeEEEEeHhHHHhhcCCh
Q 030947 114 W----------PEKNVRSRKWMSVAEARKVCQHW 137 (168)
Q Consensus 114 ~----------~e~e~~~~~W~~~~e~~~~~~~~ 137 (168)
| ...++.+++|++++++.+++..+
T Consensus 91 f~~~~~~g~~~~~~e~~~~~W~~~~el~~~l~~~ 124 (132)
T cd04661 91 FKARYMSGQFELSQNQVDFKWLAKEELQKYLNPP 124 (132)
T ss_pred EEEEEecCccccCCCcceeEecCHHHHHhhcCHH
Confidence 0 12366789999999999976543
No 49
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.56 E-value=3e-14 Score=122.06 Aligned_cols=96 Identities=20% Similarity=0.193 Sum_probs=69.6
Q ss_pred eeEEEEEEEEeeccccccccccCceEEEEEEEeC---CCceeccceeccCCCCHHHHHHHHHHHHHcCccceec------
Q 030947 39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVED------ 109 (168)
Q Consensus 39 r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~------ 109 (168)
.+.+++|+++. ++|||++|.+ .|.|.+|||+++.|||+.+||.||++||||+++....
T Consensus 203 ~vtv~avv~~~-------------g~VLLvrR~~~p~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~l~~~~~ 269 (340)
T PRK05379 203 FVTVDAVVVQS-------------GHVLLVRRRAEPGKGLWALPGGFLEQDETLLDACLRELREETGLKLPEPVLRGSIR 269 (340)
T ss_pred ceEEEEEEEEC-------------CEEEEEEecCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCcccccccceeee
Confidence 36777777753 2899999875 4789999999999999999999999999999742111
Q ss_pred ---cc--------------------c--c----cCCCceeeEEEEeHhHHHhh--cCChhHHHHHHHHH
Q 030947 110 ---QL--------------------A--E----WPEKNVRSRKWMSVAEARKV--CQHWWMKEALDRLV 147 (168)
Q Consensus 110 ---~~--------------------~--~----~~e~e~~~~~W~~~~e~~~~--~~~~~~~~~l~~~~ 147 (168)
.+ . . ....+..++.|++++++..+ ..+.+...++..+.
T Consensus 270 ~~~~f~~p~r~~~~~~i~~~f~~~~~~~~~~~~~~~de~~~~~W~~~~el~~~~~~~~~dh~~ii~~~~ 338 (340)
T PRK05379 270 DQQVFDHPGRSLRGRTITHAFLFEFPAGELPRVKGGDDADKARWVPLAELLAMRDRMFEDHFQIITHFL 338 (340)
T ss_pred eeEEEcCCCCCCCCcEEEEEEEEEecCCccCccCCCCceeeEEEEEHHHhhhhhhhhhhHHHHHHHHHh
Confidence 00 0 0 01235678999999999875 34455566665543
No 50
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.55 E-value=1.3e-14 Score=106.58 Aligned_cols=74 Identities=22% Similarity=0.144 Sum_probs=55.8
Q ss_pred eEEEEEEEeC-----CCceecc-ceeccCCCCHHHHHHHHHHHHHcCccceec------c-cc--------c--------
Q 030947 63 LEVLVISSQK-----GKGMLFP-KGGWEIDESIQEAALRETIEEAGVTGIVED------Q-LA--------E-------- 113 (168)
Q Consensus 63 ~~vLLv~r~~-----~~~W~lP-gG~ve~gEt~~~aA~REl~EEtGi~~~~~~------~-~~--------~-------- 113 (168)
++|||++|.. +|.|.+| ||+++.||++ +||.||++||||+++.... . .. .
T Consensus 12 g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (127)
T cd04693 12 GELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSELRPLFRYFFEAEGFDDYYLFYADVEIG 90 (127)
T ss_pred CeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhhcEEEEEEEeecCCeEEEEEEEecCccc
Confidence 3899988863 3799998 9999999999 9999999999999864221 0 00 0
Q ss_pred ---cCCCceeeEEEEeHhHHHhhcCCh
Q 030947 114 ---WPEKNVRSRKWMSVAEARKVCQHW 137 (168)
Q Consensus 114 ---~~e~e~~~~~W~~~~e~~~~~~~~ 137 (168)
.+..+..+++|++++++.+++...
T Consensus 91 ~~~~~~~E~~~~~w~~~~el~~~~~~~ 117 (127)
T cd04693 91 KLILQKEEVDEVKFVSKDEIDGLIGHG 117 (127)
T ss_pred ccccCHHHhhhEEEeCHHHHHHHHhcC
Confidence 011256679999999999987554
No 51
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.54 E-value=2.2e-14 Score=105.77 Aligned_cols=77 Identities=22% Similarity=0.182 Sum_probs=57.8
Q ss_pred eEEEEEEEeC-----CCceec-cceeccCCCCHHHHHHHHHHHHHcCccceeccc------------------c------
Q 030947 63 LEVLVISSQK-----GKGMLF-PKGGWEIDESIQEAALRETIEEAGVTGIVEDQL------------------A------ 112 (168)
Q Consensus 63 ~~vLLv~r~~-----~~~W~l-PgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~------------------~------ 112 (168)
++|||++|.. +|.|.+ |||+++.||++.+||+||++||||+.+.....+ .
T Consensus 12 ~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 91 (126)
T cd04697 12 GKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLTPLGLFYYDTDGNRVWGKVFSCVYDGPL 91 (126)
T ss_pred CeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCccccEEeeEEEecCCCceEEEEEEEEEECCCC
Confidence 3899988763 467999 699999999999999999999999987522200 0
Q ss_pred ccCCCceeeEEEEeHhHHHhhcCChhH
Q 030947 113 EWPEKNVRSRKWMSVAEARKVCQHWWM 139 (168)
Q Consensus 113 ~~~e~e~~~~~W~~~~e~~~~~~~~~~ 139 (168)
.....|..++.|++++++.+++....+
T Consensus 92 ~~~~~E~~~~~w~~~~el~~~~~~~~~ 118 (126)
T cd04697 92 KLQEEEVEEITWLSINEILQFKEGENI 118 (126)
T ss_pred CCCHhHhhheEEcCHHHHHHHhhcCcc
Confidence 011235667899999999998765543
No 52
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.53 E-value=5.9e-14 Score=110.21 Aligned_cols=89 Identities=25% Similarity=0.230 Sum_probs=61.8
Q ss_pred eEEEEEEEeCC-----Cce-eccceeccCCCCHHHHHHHHHHHHHcCccceeccc--------------cc---------
Q 030947 63 LEVLVISSQKG-----KGM-LFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL--------------AE--------- 113 (168)
Q Consensus 63 ~~vLLv~r~~~-----~~W-~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~--------------~~--------- 113 (168)
++|||.+|... |.| .+|||++++|||+.+||.||++||||+.......+ ..
T Consensus 49 g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 128 (180)
T PRK15393 49 GKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGVPFAEHGQFYFEDENCRVWGALFSCVSHGPF 128 (180)
T ss_pred CeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCccceeceeEEecCCCceEEEEEEEEEeCCCC
Confidence 48999888642 334 68999999999999999999999999975322100 00
Q ss_pred -cCCCceeeEEEEeHhHHHhhc--CChhHHHHHHHHHHHHh
Q 030947 114 -WPEKNVRSRKWMSVAEARKVC--QHWWMKEALDRLVMRLT 151 (168)
Q Consensus 114 -~~e~e~~~~~W~~~~e~~~~~--~~~~~~~~l~~~~~~~~ 151 (168)
....|..++.|++++++.++. ..+.....+..+.....
T Consensus 129 ~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~l~~~l~~~~ 169 (180)
T PRK15393 129 ALQEEEVSEVCWMTPEEITARCDEFTPDSLKALALWLTRNA 169 (180)
T ss_pred CCChHHeeEEEECCHHHHhhhhhhcCccHHHHHHHHHHhhc
Confidence 012266789999999999874 22444455555544443
No 53
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.53 E-value=4.5e-14 Score=102.89 Aligned_cols=72 Identities=22% Similarity=0.255 Sum_probs=54.4
Q ss_pred eEEEEEEEeC-----CCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc-------------------c--cc--
Q 030947 63 LEVLVISSQK-----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL-------------------A--EW-- 114 (168)
Q Consensus 63 ~~vLLv~r~~-----~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~-------------------~--~~-- 114 (168)
.+|||++|.. ++.|.||||+++.||++.+||.||++||||+.+...... . ..
T Consensus 13 ~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (129)
T cd04699 13 GRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPFLRYPSTVTHEDSGVYNVIYLVFVCEALSG 92 (129)
T ss_pred CcEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEEeeeeeeEEEEEcCCCEEEEEEEEEEeeecCC
Confidence 3799998874 468999999999999999999999999999976433310 0 00
Q ss_pred ---CCCceeeEEEEeHhHHHhhc
Q 030947 115 ---PEKNVRSRKWMSVAEARKVC 134 (168)
Q Consensus 115 ---~e~e~~~~~W~~~~e~~~~~ 134 (168)
+..+...++|++++++..+.
T Consensus 93 ~~~~~~e~~~~~w~~~~el~~~~ 115 (129)
T cd04699 93 AVKLSDEHEEYAWVTLEELAILK 115 (129)
T ss_pred cccCChhheEEEEecHHHhhhhh
Confidence 12255678999999986543
No 54
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.52 E-value=5.1e-14 Score=106.03 Aligned_cols=59 Identities=19% Similarity=0.097 Sum_probs=48.1
Q ss_pred ceeEEEEEEEEeeccccccccccCceEEEEEEEeC-----CCceec-cceeccCCCCHHHHHHHHHHHHHcCcc
Q 030947 38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGMLF-PKGGWEIDESIQEAALRETIEEAGVTG 105 (168)
Q Consensus 38 ~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~-----~~~W~l-PgG~ve~gEt~~~aA~REl~EEtGi~~ 105 (168)
++.++.+++++.. + ++.++||.+|.. +|.|.+ |||+++.|||+.+||.||++||||+..
T Consensus 1 ~h~~v~~~v~~~~---~------~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~ 65 (144)
T cd04692 1 WHRTFHCWIITKD---E------GKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDV 65 (144)
T ss_pred CceEEEEEEEEcc---C------CCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCC
Confidence 3567778888754 2 346899988864 378999 599999999999999999999999964
No 55
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.51 E-value=1.4e-13 Score=100.10 Aligned_cols=84 Identities=23% Similarity=0.291 Sum_probs=61.7
Q ss_pred eEEEEEEEeC----CCceeccceeccCCCCHHHHHHHHHHHHHcCccceecc--------------c-----cccC----
Q 030947 63 LEVLVISSQK----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQ--------------L-----AEWP---- 115 (168)
Q Consensus 63 ~~vLLv~r~~----~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~--------------~-----~~~~---- 115 (168)
++|||.+|.. .|.|.||||+++.||++.+||.||++||||++...... + ..+.
T Consensus 16 ~~vll~rR~~~~~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (129)
T PRK10776 16 NEIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHATLFEKLEYEFPDRHITLWFWLVESWEGEPW 95 (129)
T ss_pred CEEEEEEecCCCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCceecceEEEEEEeeCCCcEEEEEEEEEEEECCccC
Confidence 4899999875 37899999999999999999999999999998532220 0 0011
Q ss_pred CCceeeEEEEeHhHHHhhcCChhHHHHHHHH
Q 030947 116 EKNVRSRKWMSVAEARKVCQHWWMKEALDRL 146 (168)
Q Consensus 116 e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~ 146 (168)
..+..+.+|+++++++.....+.++.+++.+
T Consensus 96 ~~e~~~~~W~~~~~l~~~~~p~~~~~~~~~~ 126 (129)
T PRK10776 96 GKEGQPGRWVSQVALNADEFPPANEPIIAKL 126 (129)
T ss_pred CccCCccEEecHHHCccCCCCcccHHHHHHH
Confidence 1145577999999999875555555555544
No 56
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.50 E-value=1.5e-13 Score=108.14 Aligned_cols=78 Identities=23% Similarity=0.100 Sum_probs=60.2
Q ss_pred eEEEEEEEeC----CCceeccceeccCCCCHHHHHHHHHHHHHcCccceecccc--------------c-----------
Q 030947 63 LEVLVISSQK----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLA--------------E----------- 113 (168)
Q Consensus 63 ~~vLLv~r~~----~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~~--------------~----------- 113 (168)
.+|||+++.. ...|+||||.++.||++.+||+||++||||+.+..+..+. .
T Consensus 59 ~~vlLvrq~r~~~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l~~l~~~~~~~~~~~~~~~~f~a~~~~~~~~ 138 (185)
T PRK11762 59 DTLLLIREYAAGTERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQLTFLKELSLAPSYFSSKMNIVLAEDLYPERL 138 (185)
T ss_pred CEEEEEEeecCCCCCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEEecCCCccCcEEEEEEEEccccccC
Confidence 4799999864 3569999999999999999999999999999876554110 0
Q ss_pred -cCCCceeeEEEEeHhHHHhhcCChhHH
Q 030947 114 -WPEKNVRSRKWMSVAEARKVCQHWWMK 140 (168)
Q Consensus 114 -~~e~e~~~~~W~~~~e~~~~~~~~~~~ 140 (168)
..+.|..+..|++++++.+++..+.+.
T Consensus 139 ~~~e~E~i~~~~~~~~e~~~~~~~g~i~ 166 (185)
T PRK11762 139 EGDEPEPLEVVRWPLADLDELLARPDFS 166 (185)
T ss_pred CCCCCceeEEEEEcHHHHHHHHHcCCCC
Confidence 012345578999999999987665554
No 57
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.49 E-value=1.2e-13 Score=106.53 Aligned_cols=88 Identities=16% Similarity=0.172 Sum_probs=66.3
Q ss_pred ceeEEEEEEEEeeccccccccccCceEEEEEEEeC-----CCceecc-ceeccCCCCHHHHHHHHHHHHHcCccceeccc
Q 030947 38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGMLFP-KGGWEIDESIQEAALRETIEEAGVTGIVEDQL 111 (168)
Q Consensus 38 ~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~-----~~~W~lP-gG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~ 111 (168)
++..+++++++.+ .+|||.+|.. +|.|.+| ||+++.|||+.+||.||++||||+.+.....+
T Consensus 29 ~~~~v~v~i~~~~------------~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~~~~~~ 96 (165)
T cd02885 29 LHRAFSVFLFNSK------------GRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDLLELV 96 (165)
T ss_pred ceeEEEEEEEcCC------------CcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccchhhc
Confidence 3778888888643 3799998864 4789986 89999999999999999999999986422210
Q ss_pred --------------------ccc----------CCCceeeEEEEeHhHHHhhcCCh
Q 030947 112 --------------------AEW----------PEKNVRSRKWMSVAEARKVCQHW 137 (168)
Q Consensus 112 --------------------~~~----------~e~e~~~~~W~~~~e~~~~~~~~ 137 (168)
..| +..|..+++|++++++.+++...
T Consensus 97 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~Ev~~~~w~~~~el~~~~~~~ 152 (165)
T cd02885 97 LPRFRYRAPDDGGLVEHEIDHVFFARADVTLIPNPDEVSEYRWVSLEDLKELVAAA 152 (165)
T ss_pred cceEEEEEEcCCCceeeEEEEEEEEEeCCCCCCCccceeEEEEECHHHHHHHHHhC
Confidence 000 12366789999999999987543
No 58
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.49 E-value=1.5e-13 Score=113.76 Aligned_cols=78 Identities=17% Similarity=0.223 Sum_probs=60.8
Q ss_pred eEEEEEEEeC--CCceeccceeccCCCCHHHHHHHHHHHHHcCccceecccc-----------------------ccCCC
Q 030947 63 LEVLVISSQK--GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLA-----------------------EWPEK 117 (168)
Q Consensus 63 ~~vLLv~r~~--~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~~-----------------------~~~e~ 117 (168)
.++||+++.. .+.|.+|||+++.|||+++||.||++||||+++.....+. ...+.
T Consensus 143 ~~iLL~rr~~~~~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~~~~~s~~~~~p~~lm~~f~a~~~~~~~~~~~~ 222 (256)
T PRK00241 143 DEILLARHPRHRNGVYTVLAGFVEVGETLEQCVAREVMEESGIKVKNLRYVGSQPWPFPHSLMLGFHADYDSGEIVFDPK 222 (256)
T ss_pred CEEEEEEccCCCCCcEeCcccCCCCCCCHHHHhhhhhhhccCceeeeeEEEEeEeecCCCeEEEEEEEEecCCcccCCcc
Confidence 4899999864 4789999999999999999999999999999865444110 01223
Q ss_pred ceeeEEEEeHhHHHhhcCChhHH
Q 030947 118 NVRSRKWMSVAEARKVCQHWWMK 140 (168)
Q Consensus 118 e~~~~~W~~~~e~~~~~~~~~~~ 140 (168)
|..+++||+++|++.+.....+.
T Consensus 223 Ei~~a~W~~~del~~lp~~~sia 245 (256)
T PRK00241 223 EIADAQWFRYDELPLLPPSGTIA 245 (256)
T ss_pred cEEEEEEECHHHCcccCCchHHH
Confidence 66789999999998876655554
No 59
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.49 E-value=8.6e-14 Score=103.88 Aligned_cols=57 Identities=30% Similarity=0.399 Sum_probs=49.1
Q ss_pred EEEEEEEEeeccccccccccCceEEEEEEE-------eCCCceeccceeccCCCCHHHHHHHHHHHHHcCccc
Q 030947 41 VVGCIPYRYKCVKQSLDINEEDLEVLVISS-------QKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGI 106 (168)
Q Consensus 41 ~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r-------~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~ 106 (168)
.+|+|+|+.+ + +..+|||+++ ...+.|.||||+++.||++.+||+||++||||+++.
T Consensus 2 ~~g~v~~~~~---~------~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~ 65 (126)
T cd04662 2 SAGILLYRFR---D------GRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVD 65 (126)
T ss_pred eEEEEEEEEc---C------CcEEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcce
Confidence 6789999875 2 4568999985 345789999999999999999999999999999864
No 60
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.47 E-value=3.5e-13 Score=96.75 Aligned_cols=83 Identities=22% Similarity=0.190 Sum_probs=62.1
Q ss_pred eEEEEEEEeC----CCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc----c--------------cc-----C
Q 030947 63 LEVLVISSQK----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL----A--------------EW-----P 115 (168)
Q Consensus 63 ~~vLLv~r~~----~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~----~--------------~~-----~ 115 (168)
.++||++|.+ .|.|.||||+++.+|++.+||.||++||||++......+ . .. .
T Consensus 13 ~~~Ll~~r~~~~~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (124)
T cd03425 13 GRILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVGELLATVEHDYPDKRVTLHVFLVELWSGEPQ 92 (124)
T ss_pred CEEEEEEeCCCCCCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEeccceEEEEEeeCCCCeEEEEEEEEeeeCCCcc
Confidence 4899998864 468999999999999999999999999999986432200 0 00 1
Q ss_pred CCceeeEEEEeHhHHHhhcCChhHHHHHHH
Q 030947 116 EKNVRSRKWMSVAEARKVCQHWWMKEALDR 145 (168)
Q Consensus 116 e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~ 145 (168)
..+.....|++++++..+...+.++.+++.
T Consensus 93 ~~e~~~~~W~~~~el~~~~~~~~~~~~l~~ 122 (124)
T cd03425 93 LLEHQELRWVPPEELDDLDFPPADVPIVAA 122 (124)
T ss_pred cccCceEEEeeHHHcccCCCCcccHHHHHh
Confidence 124567899999999987666666555543
No 61
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.45 E-value=6.2e-13 Score=97.02 Aligned_cols=82 Identities=20% Similarity=0.202 Sum_probs=59.2
Q ss_pred eEEEEEEEeC----CCceeccceeccCCCCHHHHHHHHHHHHHcCccceecc--------------ccc----cC-----
Q 030947 63 LEVLVISSQK----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQ--------------LAE----WP----- 115 (168)
Q Consensus 63 ~~vLLv~r~~----~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~--------------~~~----~~----- 115 (168)
.+|||.+|.. .|.|.||||+++.||++.+||.||++||||+.+..... +.. ..
T Consensus 16 ~~vLl~~R~~~~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ 95 (128)
T TIGR00586 16 GEIIITRRADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFSEFEKLEYEFYPRHITLWFWLLERWEGGPPG 95 (128)
T ss_pred CEEEEEEEeCCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEEEECCCcEEEEEEEEEEEcCCCcC
Confidence 3799998864 36899999999999999999999999999998543320 000 01
Q ss_pred CCceeeEEEEeHhHHHhhcCChhHHHHHH
Q 030947 116 EKNVRSRKWMSVAEARKVCQHWWMKEALD 144 (168)
Q Consensus 116 e~e~~~~~W~~~~e~~~~~~~~~~~~~l~ 144 (168)
..+...+.|++++++.++.....+..+++
T Consensus 96 ~~~~~~~~W~~~~~l~~~~~p~~~~~~~~ 124 (128)
T TIGR00586 96 KEGQPEEWWVLVGLLADDFFPAANPVIIK 124 (128)
T ss_pred cccccccEEeCHHHCCccCCCCCCHHHHH
Confidence 11345679999999998755544444443
No 62
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.44 E-value=2.4e-13 Score=96.63 Aligned_cols=74 Identities=27% Similarity=0.401 Sum_probs=56.8
Q ss_pred eEEEEEEEeC--CCceeccceeccCCCCHHHHHHHHHHHHHcCccceec------ccc----------c-----------
Q 030947 63 LEVLVISSQK--GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVED------QLA----------E----------- 113 (168)
Q Consensus 63 ~~vLLv~r~~--~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~------~~~----------~----------- 113 (168)
.++||+++.. .+.|.+|||+++.||++.++|.||+.||+|+...... ... .
T Consensus 12 ~~ill~kr~~~~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (123)
T cd02883 12 GRVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLRLLGVYEVESPDEGEHAVVFVFLARLVGGEPT 91 (123)
T ss_pred CCEEEEEEcCCCCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceeeeEEEEEEeeccCCCceEEEEEEEEEeCCCCcC
Confidence 4899999988 6899999999999999999999999999999864221 000 0
Q ss_pred -cCCCceeeEEEEeHhHHHhhcCC
Q 030947 114 -WPEKNVRSRKWMSVAEARKVCQH 136 (168)
Q Consensus 114 -~~e~e~~~~~W~~~~e~~~~~~~ 136 (168)
....+....+|++++++.+....
T Consensus 92 ~~~~~e~~~~~w~~~~~l~~~~~~ 115 (123)
T cd02883 92 LLPPDEISEVRWVTLDELPALALS 115 (123)
T ss_pred CCCCCccceEEEEcHHHCcccccc
Confidence 11134567899999999875433
No 63
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.44 E-value=7.2e-13 Score=104.16 Aligned_cols=89 Identities=18% Similarity=0.171 Sum_probs=64.8
Q ss_pred CceeEEEEEEEEeeccccccccccCceEEEEEEEeC-----CCceecc-ceeccCCCCHHHHHHHHHHHHHcCccceec-
Q 030947 37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGMLFP-KGGWEIDESIQEAALRETIEEAGVTGIVED- 109 (168)
Q Consensus 37 ~~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~-----~~~W~lP-gG~ve~gEt~~~aA~REl~EEtGi~~~~~~- 109 (168)
.++..+++++++.+ ++|||++|.. +|.|.+| ||+++.||++.+||+||++||||+++....
T Consensus 32 ~~h~av~v~i~~~~------------g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~~~~ 99 (184)
T PRK03759 32 PLHLAFSCYLFDAD------------GRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITDLEL 99 (184)
T ss_pred CeeeEEEEEEEcCC------------CeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCcccccc
Confidence 45677888887642 3899998753 3567765 799999999999999999999999864211
Q ss_pred cc-------------------ccc----------CCCceeeEEEEeHhHHHhhcCCh
Q 030947 110 QL-------------------AEW----------PEKNVRSRKWMSVAEARKVCQHW 137 (168)
Q Consensus 110 ~~-------------------~~~----------~e~e~~~~~W~~~~e~~~~~~~~ 137 (168)
.+ ..| ...|..++.|++++++.+++...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~vf~~~~~~~~~~~~~Ev~~~~W~~~~el~~~i~~~ 156 (184)
T PRK03759 100 VLPDFRYRATDPNGIVENEVCPVFAARVTSALQPNPDEVMDYQWVDPADLLRAVDAT 156 (184)
T ss_pred ccceEEEEEecCCCceeeEEEEEEEEEECCCCCCChhHeeeEEEECHHHHHHHHHhC
Confidence 00 001 12256789999999999987543
No 64
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.42 E-value=5e-13 Score=98.57 Aligned_cols=45 Identities=36% Similarity=0.438 Sum_probs=40.1
Q ss_pred EEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCccceec
Q 030947 64 EVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVED 109 (168)
Q Consensus 64 ~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~ 109 (168)
++||+++. .+.|.||||+++.||++.+||.||++||||+.+....
T Consensus 12 ~vLl~~~~-~~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~~~ 56 (118)
T cd04665 12 GLLLVRHK-DRGWEFPGGHVEPGETIEEAARREVWEETGAELGSLT 56 (118)
T ss_pred EEEEEEeC-CCEEECCccccCCCCCHHHHHHHHHHHHHCCccCceE
Confidence 79999887 4679999999999999999999999999999874444
No 65
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.42 E-value=5.5e-13 Score=99.94 Aligned_cols=53 Identities=30% Similarity=0.313 Sum_probs=45.3
Q ss_pred EEEEEEEEeeccccccccccCceEEEEEEEeC-----CCceeccceeccCCCCHHHHHHHHHHHHHcCcc
Q 030947 41 VVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTG 105 (168)
Q Consensus 41 ~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~-----~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~ 105 (168)
.+++++++.+ ++|||+++.+ .+.|.+|||+++.||++.+||.||++||||+.+
T Consensus 2 ~~~~~i~~~~------------g~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~ 59 (133)
T cd04685 2 AARVVLLDPD------------DRVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITV 59 (133)
T ss_pred eEEEEEEcCC------------CeEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCcc
Confidence 4677787643 3899998864 358999999999999999999999999999987
No 66
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.41 E-value=1.2e-12 Score=99.46 Aligned_cols=44 Identities=32% Similarity=0.346 Sum_probs=39.8
Q ss_pred eEEEEEEEeC-----CCceeccceeccCCCCHHHHHHHHHHHHHcCccc
Q 030947 63 LEVLVISSQK-----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGI 106 (168)
Q Consensus 63 ~~vLLv~r~~-----~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~ 106 (168)
.+|||++|.. +|.|.+|||+++.||++.+||.||++||+|+...
T Consensus 13 ~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~ 61 (143)
T cd04694 13 QKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLD 61 (143)
T ss_pred CEEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCcc
Confidence 4899999963 4789999999999999999999999999999864
No 67
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.41 E-value=6e-13 Score=105.13 Aligned_cols=79 Identities=22% Similarity=0.116 Sum_probs=59.3
Q ss_pred ceEEEEEEEeC---------CCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc------------------c--
Q 030947 62 DLEVLVISSQK---------GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL------------------A-- 112 (168)
Q Consensus 62 ~~~vLLv~r~~---------~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~------------------~-- 112 (168)
+.+|||+++.+ ...|+||+|+++.||++.+||+||++||||+.+.....+ .
T Consensus 56 ~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~~~~~~~~~~~g~~~~~~~~f~a~~ 135 (185)
T TIGR00052 56 KDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNLRKLLSFYSSPGGVTELIHLFIAEV 135 (185)
T ss_pred CCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecceEEEEEEEcCCCCCcEEEEEEEEEE
Confidence 34899999753 246899999999999999999999999999987544410 0
Q ss_pred ---------ccCCCceeeEEEEeHhHHHhhcCChhHH
Q 030947 113 ---------EWPEKNVRSRKWMSVAEARKVCQHWWMK 140 (168)
Q Consensus 113 ---------~~~e~e~~~~~W~~~~e~~~~~~~~~~~ 140 (168)
..++.+.....|++++++.+++....+.
T Consensus 136 ~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~~~~G~i~ 172 (185)
T TIGR00052 136 DDNQAAGIGGGADEEEIEVLHLVFSQALQWIKEGKID 172 (185)
T ss_pred chhhcCCCCCCCCccceEEEEeCHHHHHHHHHcCCCC
Confidence 0012244578899999999998665554
No 68
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=99.40 E-value=1.5e-12 Score=103.37 Aligned_cols=88 Identities=24% Similarity=0.297 Sum_probs=62.8
Q ss_pred ceeEEEEEEEEeeccccccccccCceEEEEEEEeC-----CCceeccceeccCC-CCHHHHHHHHHHHHHcCccceeccc
Q 030947 38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGMLFPKGGWEID-ESIQEAALRETIEEAGVTGIVEDQL 111 (168)
Q Consensus 38 ~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~-----~~~W~lPgG~ve~g-Et~~~aA~REl~EEtGi~~~~~~~~ 111 (168)
.+..+.++++..+ ++.+||+++|.. .|.|+||||++|.+ |++.+||+||++||||++......+
T Consensus 29 ~~~aavvl~l~~~----------~~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~l 98 (190)
T PRK10707 29 QRQAAVLIPIVRR----------PQPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAVEVI 98 (190)
T ss_pred CCCeEEEEEEEEC----------CCCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccceEEE
Confidence 4456666666543 334788888652 37899999999975 6899999999999999986544300
Q ss_pred ---c---------------------cc--CCCceeeEEEEeHhHHHhhcC
Q 030947 112 ---A---------------------EW--PEKNVRSRKWMSVAEARKVCQ 135 (168)
Q Consensus 112 ---~---------------------~~--~e~e~~~~~W~~~~e~~~~~~ 135 (168)
. .+ ++.|..++.|++++++.++..
T Consensus 99 g~l~~~~~~~~~~~~~~v~~~~~~~~~~~d~~Ev~~v~~vpl~e~~~~~~ 148 (190)
T PRK10707 99 GVLPPVDSSTGYQVTPVVGIIPPDLPYRANEDEVAAVFEMPLAEALHLGR 148 (190)
T ss_pred EEeeeeeccCCcEEEEEEEEECCCCCCCCChhhhheEEEEeHHHHhCccc
Confidence 0 00 123666789999999988754
No 69
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.40 E-value=1.3e-12 Score=104.67 Aligned_cols=78 Identities=23% Similarity=0.127 Sum_probs=59.2
Q ss_pred eEEEEEEEeCCC---------ceeccceeccCCCCHHHHHHHHHHHHHcCccceec------------------ccc---
Q 030947 63 LEVLVISSQKGK---------GMLFPKGGWEIDESIQEAALRETIEEAGVTGIVED------------------QLA--- 112 (168)
Q Consensus 63 ~~vLLv~r~~~~---------~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~------------------~~~--- 112 (168)
.+|||+++.+.+ .|++|+|.+++||++.+||+||+.||||+.+.... .+.
T Consensus 62 ~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~~l~~~~~spg~~~e~~~~fla~~~ 141 (202)
T PRK10729 62 DEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRTKPVLSYLASPGGTSERSSIMVGEVD 141 (202)
T ss_pred CEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEEEEEEEEEcCCCcCceEEEEEEEEEc
Confidence 489999987542 49999999999999999999999999999875433 000
Q ss_pred ---------ccCCCceeeEEEEeHhHHHhhcCChhHH
Q 030947 113 ---------EWPEKNVRSRKWMSVAEARKVCQHWWMK 140 (168)
Q Consensus 113 ---------~~~e~e~~~~~W~~~~e~~~~~~~~~~~ 140 (168)
..++.|..++.|++++++.+++....+.
T Consensus 142 ~~~~~~~~~~~de~E~i~v~~~~~~e~~~~~~~G~i~ 178 (202)
T PRK10729 142 ATTASGIHGLADENEDIRVHVVSREQAYQWVEEGKID 178 (202)
T ss_pred chhcccCCCCCCCCCceEEEEEcHHHHHHHHHcCCCC
Confidence 0122345578999999999987655443
No 70
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.39 E-value=1.4e-12 Score=100.13 Aligned_cols=88 Identities=16% Similarity=0.151 Sum_probs=65.2
Q ss_pred CceeEEEEEEEEeeccccccccccCceEEEEEEEeC-----CCceecc-ceeccCCCCHHHHHHHHHHHHHcCccceec-
Q 030947 37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGMLFP-KGGWEIDESIQEAALRETIEEAGVTGIVED- 109 (168)
Q Consensus 37 ~~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~-----~~~W~lP-gG~ve~gEt~~~aA~REl~EEtGi~~~~~~- 109 (168)
.++..+++++++.+ ++|||.+|.. +|.|.+| ||+++.|| .+||.||++||||++.....
T Consensus 25 ~~h~~v~v~v~~~~------------g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~~l 90 (158)
T TIGR02150 25 PLHRAFSVFLFNEE------------GQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPADDVPL 90 (158)
T ss_pred CeEEEEEEEEEcCC------------CeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCccccce
Confidence 46778888888642 3899998864 3889997 89999999 49999999999999864321
Q ss_pred -------c-----------cccc----------CCCceeeEEEEeHhHHHhhcCChh
Q 030947 110 -------Q-----------LAEW----------PEKNVRSRKWMSVAEARKVCQHWW 138 (168)
Q Consensus 110 -------~-----------~~~~----------~e~e~~~~~W~~~~e~~~~~~~~~ 138 (168)
. ...| ...|..++.|++++++.+++..+.
T Consensus 91 ~~~~~~~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~Ev~~~~W~~~~el~~~~~~~~ 147 (158)
T TIGR02150 91 TVLPRFSYRARDAWGEHELCPVFFARAPVPLNPNPEEVAEYRWVSLEELKEILKAPW 147 (158)
T ss_pred EEcceEEEEEecCCCcEEEEEEEEEecCCcccCChhHeeeEEEeCHHHHHHHHhcCc
Confidence 0 0000 122677899999999999875443
No 71
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=99.37 E-value=1.5e-12 Score=97.21 Aligned_cols=43 Identities=40% Similarity=0.470 Sum_probs=38.2
Q ss_pred ceEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCcc
Q 030947 62 DLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTG 105 (168)
Q Consensus 62 ~~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~ 105 (168)
+.++|+.+... +.|.||||+++.||++.+||.||++||||+.+
T Consensus 13 ~~~ll~~r~~~-~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~ 55 (126)
T cd04663 13 VLELLVFEHPL-AGFQIVKGTVEPGETPEAAALRELQEESGLPS 55 (126)
T ss_pred eEEEEEEEcCC-CcEECCCccCCCCCCHHHHHHHHHHHHHCCee
Confidence 35788887665 56999999999999999999999999999986
No 72
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=99.34 E-value=6e-12 Score=99.72 Aligned_cols=44 Identities=25% Similarity=0.179 Sum_probs=40.8
Q ss_pred CceEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCc
Q 030947 61 EDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVT 104 (168)
Q Consensus 61 ~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~ 104 (168)
+..+||++++...+.|.||||+++.||++.+||.||++||||++
T Consensus 47 ~~l~vLl~~r~~~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~ 90 (186)
T cd03670 47 PILQFVAIKRPDSGEWAIPGGMVDPGEKISATLKREFGEEALNS 90 (186)
T ss_pred CeeEEEEEEeCCCCcCcCCeeeccCCCCHHHHHHHHHHHHHccc
Confidence 45799999999889999999999999999999999999999754
No 73
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.33 E-value=9.3e-12 Score=96.11 Aligned_cols=72 Identities=24% Similarity=0.368 Sum_probs=54.2
Q ss_pred EEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCccceecccccc----------------------CCCceee
Q 030947 64 EVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLAEW----------------------PEKNVRS 121 (168)
Q Consensus 64 ~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~~~~----------------------~e~e~~~ 121 (168)
++||+++.. ..|.+|||+++.||++.+||.||++||||+.+.....+..+ +..+..+
T Consensus 36 ~~LL~~~~~-~~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~~~lg~~~~~~~~~~~~~~vf~A~~~~~~~~~e~~E 114 (156)
T TIGR02705 36 QWLLTEHKR-RGLEFPGGKVEPGETSKEAAIREVMEETGAIVKELHYIGQYEVEGESTDFVKDVYFAEVSALESKDDYLE 114 (156)
T ss_pred EEEEEEEcC-CcEECCceecCCCCCHHHHHHHHHHHHhCcEeeeeEEEEEEEecCCCcEEEEEEEEEEEeccccCCCcee
Confidence 789998775 45999999999999999999999999999987655411100 1123344
Q ss_pred EE-EEeHhHHHhhcCC
Q 030947 122 RK-WMSVAEARKVCQH 136 (168)
Q Consensus 122 ~~-W~~~~e~~~~~~~ 136 (168)
.. +++++++++++..
T Consensus 115 ~~~~~~~~~~~~~~~~ 130 (156)
T TIGR02705 115 TKGPVLLQEIPDIIKA 130 (156)
T ss_pred eEeEEEHHHHHHHHhc
Confidence 55 7999999887643
No 74
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.32 E-value=9.3e-12 Score=97.22 Aligned_cols=96 Identities=17% Similarity=0.089 Sum_probs=68.4
Q ss_pred CceeEEEEEEEEeeccccccccccCceEEEEEEEeC-----CCce-eccceeccCCCCHHHHHHHHHHHHHcCccceec-
Q 030947 37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGM-LFPKGGWEIDESIQEAALRETIEEAGVTGIVED- 109 (168)
Q Consensus 37 ~~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~-----~~~W-~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~- 109 (168)
-++..+.+.+|..+. + +..++|+.||.. +|.| .+|+|+++.||++.+||+||++||||+++....
T Consensus 30 ~~h~~v~~~~~~~~~--~------~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~~~ 101 (180)
T cd03676 30 LVTYGVHLNGYVRDE--D------GGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQ 101 (180)
T ss_pred ceEEEEEEEEEEEcC--C------CCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHHHhh
Confidence 456677766665431 0 136888888873 4889 599999999999999999999999999864211
Q ss_pred ---------c------------ccc----c--------CCCceeeEEEEeHhHHHhhcCChhHH
Q 030947 110 ---------Q------------LAE----W--------PEKNVRSRKWMSVAEARKVCQHWWMK 140 (168)
Q Consensus 110 ---------~------------~~~----~--------~e~e~~~~~W~~~~e~~~~~~~~~~~ 140 (168)
. ... . .+.|..++.|++++|+.+++....+.
T Consensus 102 l~~~g~~~~~~~~~~~~~~~e~~~~f~~~~~~~~~~~~~~~Ev~~~~~~~~~el~~~l~~g~~~ 165 (180)
T cd03676 102 LKPVGVVSYLREGEAGGLQPEVEYVYDLELPPDFIPAPQDGEVESFRLLTIDEVLRALKEGEFK 165 (180)
T ss_pred ceeccEEEEEEEcCCCcEeeeEEEEEEEEcCCCCeeCCCCCcEeEEEEECHHHHHHHHHcCCCC
Confidence 0 000 0 12366789999999999988665443
No 75
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.32 E-value=1e-11 Score=91.73 Aligned_cols=43 Identities=35% Similarity=0.412 Sum_probs=37.3
Q ss_pred EEEEEEEeC---CCceeccceeccCCCCHHHHHHHHHHHHHcCccc
Q 030947 64 EVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGI 106 (168)
Q Consensus 64 ~vLLv~r~~---~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~ 106 (168)
++||++|+. .+.|.||||+++.||++.+||.||++||||+++.
T Consensus 16 ~~lL~~r~~~~~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~ 61 (118)
T cd04674 16 GLLVIRRGIEPGRGKLALPGGFIELGETWQDAVARELLEETGVAVD 61 (118)
T ss_pred CEEEEEeecCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCccc
Confidence 366666653 3789999999999999999999999999999864
No 76
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=99.28 E-value=1.9e-11 Score=97.15 Aligned_cols=89 Identities=16% Similarity=0.041 Sum_probs=63.9
Q ss_pred eEEEEEEEEeeccccccccccCceEEEEEEEeCCC----------ceeccceeccCCCCHHHHHHHHHHHHHcCccceec
Q 030947 40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGK----------GMLFPKGGWEIDESIQEAALRETIEEAGVTGIVED 109 (168)
Q Consensus 40 ~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~~----------~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~ 109 (168)
..++++++.. ++.+|||+++.+.+ .|++|+|.++.| ++.+||+||+.||||+.+..+.
T Consensus 46 ~~v~Vl~~~~-----------~~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~~ 113 (191)
T PRK15009 46 NGATILLYNA-----------KKKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEVGEVR 113 (191)
T ss_pred CEEEEEEEEC-----------CCCEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCccceEE
Confidence 3566666643 23489999987543 399999999965 6999999999999999875444
Q ss_pred cc------------------c-----------ccCCCceeeEEEEeHhHHHhhcCChhHH
Q 030947 110 QL------------------A-----------EWPEKNVRSRKWMSVAEARKVCQHWWMK 140 (168)
Q Consensus 110 ~~------------------~-----------~~~e~e~~~~~W~~~~e~~~~~~~~~~~ 140 (168)
.+ . ...+.|.-++.|++++++.+++....+.
T Consensus 114 ~l~~~~~spG~s~e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~i~~G~i~ 173 (191)
T PRK15009 114 KLFELYMSPGGVTELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEMIKTGEIR 173 (191)
T ss_pred EeeEEEcCCcccCcEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHHHHcCCCC
Confidence 00 0 0012345578999999999998665554
No 77
>PRK08999 hypothetical protein; Provisional
Probab=99.28 E-value=2.1e-11 Score=102.56 Aligned_cols=84 Identities=21% Similarity=0.261 Sum_probs=62.1
Q ss_pred eEEEEEEEeC----CCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc-------------------ccc----C
Q 030947 63 LEVLVISSQK----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL-------------------AEW----P 115 (168)
Q Consensus 63 ~~vLLv~r~~----~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~-------------------~~~----~ 115 (168)
.+|||.+|.. .|.|.||||+++.||++.+||.||++||||+.+.....+ ..+ .
T Consensus 17 ~~vLL~kR~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~l~~~~h~~~~~~~~i~~y~~~~~~~~~~ 96 (312)
T PRK08999 17 GRILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGIEVTAARPLITVRHDYPDKRVRLDVRRVTAWQGEPH 96 (312)
T ss_pred CeEEEEEecCCCCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCceecceeEEEEEEEcCCCeEEEEEEEEEEecCccc
Confidence 3799998864 378999999999999999999999999999985432200 001 1
Q ss_pred CCceeeEEEEeHhHHHhhcCChhHHHHHHHH
Q 030947 116 EKNVRSRKWMSVAEARKVCQHWWMKEALDRL 146 (168)
Q Consensus 116 e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~ 146 (168)
..+...++|++++++.++...+.++.+++.+
T Consensus 97 ~~e~~~~~Wv~~~el~~~~~~~~~~~i~~~l 127 (312)
T PRK08999 97 GREGQPLAWVAPDELAVYPFPPANQPIVRAL 127 (312)
T ss_pred CccCCccEEecHHHcccCCCCcchHHHHHHh
Confidence 1145567999999999876666666555543
No 78
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=99.28 E-value=2e-11 Score=90.72 Aligned_cols=109 Identities=27% Similarity=0.346 Sum_probs=81.2
Q ss_pred ceeEEEEEEEEeeccccccccccCceEEEEEEEe-------CCCceeccceeccCCCCHHHHHHHHHHHHHcCccceec-
Q 030947 38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQ-------KGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVED- 109 (168)
Q Consensus 38 ~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~-------~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~- 109 (168)
.+..+|+++|+.. . +...|||++.. +.|.|++|+|-...||.+..||+||+-||+||-++-..
T Consensus 2 pK~SAGvLlYR~~---a------G~v~VLLvHPGGPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vdGP~~ 72 (161)
T COG4119 2 PKLSAGVLLYRAR---A------GVVDVLLVHPGGPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVDGPRI 72 (161)
T ss_pred CcccceeEEEEec---C------CCEEEEEecCCCCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceeecCchh
Confidence 3567899999986 4 34589999875 34789999999999999999999999999999753111
Q ss_pred -------------------------------cccccCCC--------ceeeEEEEeHhHHHhhcCChhHHHHHHHHHHHH
Q 030947 110 -------------------------------QLAEWPEK--------NVRSRKWMSVAEARKVCQHWWMKEALDRLVMRL 150 (168)
Q Consensus 110 -------------------------------~~~~~~e~--------e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~~ 150 (168)
+...||.. |.+.+.||++.++...+... .+..+..+.++.
T Consensus 73 ~lG~~kQ~GGKvVta~~veae~Dva~~rSntFe~eWPprSG~M~~FPEVDRagWF~l~eAr~Kil~g-QRpfldrL~a~~ 151 (161)
T COG4119 73 DLGSLKQSGGKVVTAFGVEAELDVADARSNTFELEWPPRSGKMRKFPEVDRAGWFPLAEARTKILKG-QRPFLDRLMAHA 151 (161)
T ss_pred hhhhhccCCCcEEEEEeeeeeeehhhhhcceeeeecCCCCCccccCcccccccceecHHHHhHHhhc-cchHHHHHHHHh
Confidence 11234432 66788999999998877543 456777777765
Q ss_pred hcccCC
Q 030947 151 TSQQLH 156 (168)
Q Consensus 151 ~~~~~~ 156 (168)
..+...
T Consensus 152 ~ag~s~ 157 (161)
T COG4119 152 VAGLSE 157 (161)
T ss_pred cccccc
Confidence 555443
No 79
>PLN02709 nudix hydrolase
Probab=99.27 E-value=2.7e-11 Score=98.29 Aligned_cols=46 Identities=24% Similarity=0.353 Sum_probs=40.0
Q ss_pred CceEEEEEEEeC-----CCceeccceeccCC-CCHHHHHHHHHHHHHcCccc
Q 030947 61 EDLEVLVISSQK-----GKGMLFPKGGWEID-ESIQEAALRETIEEAGVTGI 106 (168)
Q Consensus 61 ~~~~vLLv~r~~-----~~~W~lPgG~ve~g-Et~~~aA~REl~EEtGi~~~ 106 (168)
++.+|||++|.. .|.|+||||+++++ +++.+||+||+.||+|+...
T Consensus 49 ~~~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~ 100 (222)
T PLN02709 49 NELRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPS 100 (222)
T ss_pred CceEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCch
Confidence 456899999974 48999999999997 57899999999999999764
No 80
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=99.24 E-value=7.1e-11 Score=85.24 Aligned_cols=44 Identities=34% Similarity=0.315 Sum_probs=40.6
Q ss_pred eEEEEEEEeCCC-ceeccceeccCCCCHHH-HHHHHHHHHHcCccc
Q 030947 63 LEVLVISSQKGK-GMLFPKGGWEIDESIQE-AALRETIEEAGVTGI 106 (168)
Q Consensus 63 ~~vLLv~r~~~~-~W~lPgG~ve~gEt~~~-aA~REl~EEtGi~~~ 106 (168)
.++|+.+++..+ .|.||||+++.||++.+ ||+||++||||+.+.
T Consensus 24 ~~vl~~~~~~~~~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~ 69 (161)
T COG0494 24 GEVLLAQRRDDGGLWELPGGKVEPGEELPEEAAARELEEETGLRVK 69 (161)
T ss_pred CEEeEEEccccCCceecCCcccCCCCchHHHHHHHHHHHHhCCeee
Confidence 589999998876 99999999999999988 999999999999876
No 81
>PLN03143 nudix hydrolase; Provisional
Probab=99.07 E-value=2.9e-09 Score=89.67 Aligned_cols=45 Identities=18% Similarity=0.192 Sum_probs=37.8
Q ss_pred CceEEEEEEEeCC----CceeccceeccC-CCCHHHHHHHHHHHHHcCcc
Q 030947 61 EDLEVLVISSQKG----KGMLFPKGGWEI-DESIQEAALRETIEEAGVTG 105 (168)
Q Consensus 61 ~~~~vLLv~r~~~----~~W~lPgG~ve~-gEt~~~aA~REl~EEtGi~~ 105 (168)
++.+|||+++.+. ..|+||+|.+|. +|++.+||+||++||||+.+
T Consensus 141 ge~~VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~ 190 (291)
T PLN03143 141 GETYAVLTEQVRVPVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKL 190 (291)
T ss_pred CCEEEEEEEeEecCCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCcc
Confidence 3445889888752 469999999997 48999999999999999964
No 82
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=99.03 E-value=3.6e-10 Score=94.12 Aligned_cols=72 Identities=22% Similarity=0.325 Sum_probs=57.0
Q ss_pred EEEEEEEeC--CCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc--ccc---------------------CCCc
Q 030947 64 EVLVISSQK--GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL--AEW---------------------PEKN 118 (168)
Q Consensus 64 ~vLLv~r~~--~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~--~~~---------------------~e~e 118 (168)
++||.++.+ .|.+++-.|+||+|||+++|+.||++||+||++...+.+ ..| ++.|
T Consensus 156 ~ilLa~~~~h~~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~~vrY~~SQPWPfP~SLMigf~aey~sgeI~~d~~E 235 (279)
T COG2816 156 EILLARHPRHFPGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVKNVRYVGSQPWPFPHSLMLGFMAEYDSGEITPDEGE 235 (279)
T ss_pred ceeecCCCCCCCcceeeeeecccCCccHHHHHHHHHHHhhCeEEeeeeEEeccCCCCchhhhhhheeeeccccccCCcch
Confidence 578877764 589999999999999999999999999999998766621 111 2336
Q ss_pred eeeEEEEeHhHHHhhcC
Q 030947 119 VRSRKWMSVAEARKVCQ 135 (168)
Q Consensus 119 ~~~~~W~~~~e~~~~~~ 135 (168)
..+++||+.+|+...+.
T Consensus 236 leda~WFs~~evl~~L~ 252 (279)
T COG2816 236 LEDARWFSRDEVLPALP 252 (279)
T ss_pred hhhccccCHhHHhhhcC
Confidence 77899999999655543
No 83
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=99.02 E-value=2.8e-10 Score=95.75 Aligned_cols=75 Identities=25% Similarity=0.349 Sum_probs=56.8
Q ss_pred CceEEEEEEEeC--CCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc--cccC---------------------
Q 030947 61 EDLEVLVISSQK--GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL--AEWP--------------------- 115 (168)
Q Consensus 61 ~~~~vLLv~r~~--~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~--~~~~--------------------- 115 (168)
+..+.||.|.++ +|.|..+.|++|+|||+++||+||++||||+++...... ..||
T Consensus 198 d~~~~LL~R~~r~~~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~~~asQPWP~~p~SLMIgc~ala~~~~~I~ 277 (345)
T KOG3084|consen 198 DGKHALLGRQKRYPPGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVISYVASQPWPLMPQSLMIGCLALAKLNGKIS 277 (345)
T ss_pred CCCEeeeecccCCCCchhhhhhccCCccccHHHHHHHHHHHHhCceeeeEeeeecCCCCCCchHHHHHHHHHHhhCCccc
Confidence 334677776554 489999999999999999999999999999998755511 2232
Q ss_pred ---CCceeeEEEEeHhHHHhhcC
Q 030947 116 ---EKNVRSRKWMSVAEARKVCQ 135 (168)
Q Consensus 116 ---e~e~~~~~W~~~~e~~~~~~ 135 (168)
+.|..+.+||+.+|+.+.+.
T Consensus 278 vd~dlEleDaqwF~r~ev~~aL~ 300 (345)
T KOG3084|consen 278 VDKDLELEDAQWFDREEVKSALT 300 (345)
T ss_pred cCcchhhhhcccccHHHHHHHHH
Confidence 11455789999999877654
No 84
>PLN02791 Nudix hydrolase homolog
Probab=98.84 E-value=2.4e-08 Score=93.40 Aligned_cols=58 Identities=19% Similarity=0.122 Sum_probs=48.9
Q ss_pred CceeEEEEEEEEeeccccccccccCceEEEEEEEeC-----CCceec-cceeccCCCCHHHHHHHHHHHHHcCcc
Q 030947 37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGMLF-PKGGWEIDESIQEAALRETIEEAGVTG 105 (168)
Q Consensus 37 ~~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~-----~~~W~l-PgG~ve~gEt~~~aA~REl~EEtGi~~ 105 (168)
.++.++.+.+|+.+ +.++||.+|.. +|.|.+ |||++..||++.+||.||++||+||..
T Consensus 30 l~HrAvhVwIfn~~-----------~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l 93 (770)
T PLN02791 30 DYHRAVHVWIYSES-----------TQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIIL 93 (770)
T ss_pred CceEEEEEEEEECC-----------CCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCC
Confidence 46788888888742 24789988864 589999 699999999999999999999999973
No 85
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=98.80 E-value=2.2e-08 Score=82.64 Aligned_cols=57 Identities=16% Similarity=0.116 Sum_probs=41.8
Q ss_pred CceeEEEEEEEEeeccccccccccCceEEEEEEEeC-----CCceecc-ceeccCC----C----------C---HHHHH
Q 030947 37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGMLFP-KGGWEID----E----------S---IQEAA 93 (168)
Q Consensus 37 ~~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~-----~~~W~lP-gG~ve~g----E----------t---~~~aA 93 (168)
.++.++.+++|+.+ +++||.||.. +|.|... +|++..| | + ..+||
T Consensus 54 l~Hra~~v~i~n~~------------g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA 121 (247)
T PLN02552 54 LLHRAFSVFLFNSK------------YELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAA 121 (247)
T ss_pred ceEEEEEEEEEcCC------------CeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHH
Confidence 57788899998743 3899999874 3689555 3444433 2 1 68999
Q ss_pred HHHHHHHHcCcc
Q 030947 94 LRETIEEAGVTG 105 (168)
Q Consensus 94 ~REl~EEtGi~~ 105 (168)
.||++||+||..
T Consensus 122 ~REL~EElGI~~ 133 (247)
T PLN02552 122 QRKLLHELGIPA 133 (247)
T ss_pred HhHHHHHhCCCc
Confidence 999999999984
No 86
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=98.67 E-value=2.4e-07 Score=73.72 Aligned_cols=49 Identities=24% Similarity=0.324 Sum_probs=42.0
Q ss_pred CceEEEEEEEeCC--C--ceeccceeccCCCCHHHHHHHHHHHHHcCccceec
Q 030947 61 EDLEVLVISSQKG--K--GMLFPKGGWEIDESIQEAALRETIEEAGVTGIVED 109 (168)
Q Consensus 61 ~~~~vLLv~r~~~--~--~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~ 109 (168)
++..++|+++.+. | --++|.|-++.||++..||.||++||||+.+....
T Consensus 86 G~~~ivL~kQfRpP~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~gkv~~ 138 (225)
T KOG3041|consen 86 GKPYIVLVKQFRPPTGKICIELPAGLIDDGEDFEGAAIRELEEETGYKGKVDM 138 (225)
T ss_pred CcEEEEEEEeecCCCCcEEEEcccccccCCCchHHHHHHHHHHHhCccceeee
Confidence 5678999998764 3 47899999999999999999999999999865444
No 87
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=98.57 E-value=2.6e-07 Score=75.17 Aligned_cols=72 Identities=28% Similarity=0.387 Sum_probs=54.2
Q ss_pred CceEEEEEEEeC-----CCceeccceeccCC-CCHHHHHHHHHHHHHcCccceecc---c-------------------c
Q 030947 61 EDLEVLVISSQK-----GKGMLFPKGGWEID-ESIQEAALRETIEEAGVTGIVEDQ---L-------------------A 112 (168)
Q Consensus 61 ~~~~vLLv~r~~-----~~~W~lPgG~ve~g-Et~~~aA~REl~EEtGi~~~~~~~---~-------------------~ 112 (168)
++..|||.+|.. .|.-+||||+.+.+ ++-.++|.||.+||+|++...... + .
T Consensus 56 ~~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~~g~l~~~~~r~~~~v~p~v~~l~~ 135 (246)
T KOG3069|consen 56 GELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDVLGALPPFVLRSGWSVFPVVGFLSD 135 (246)
T ss_pred CceEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHhhhhhhccceeeccCcccceeEEEEec
Confidence 567899999873 48999999999975 467889999999999998643330 0 0
Q ss_pred c-------cCCCceeeEEEEeHhHHHh
Q 030947 113 E-------WPEKNVRSRKWMSVAEARK 132 (168)
Q Consensus 113 ~-------~~e~e~~~~~W~~~~e~~~ 132 (168)
. ....|...+.|++++++..
T Consensus 136 ~~~l~~~~ln~gEv~~~F~VPL~~ll~ 162 (246)
T KOG3069|consen 136 KKILPSLRLNSGEVESAFWVPLTDLLL 162 (246)
T ss_pred ccccccccCCchheeeeeeeeHHHHhh
Confidence 0 0123677899999999865
No 88
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=98.56 E-value=1.1e-07 Score=79.81 Aligned_cols=72 Identities=28% Similarity=0.392 Sum_probs=54.9
Q ss_pred eEEEEEEEeC-----CCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc-----------------------cc-
Q 030947 63 LEVLVISSQK-----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL-----------------------AE- 113 (168)
Q Consensus 63 ~~vLLv~r~~-----~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~-----------------------~~- 113 (168)
.+||+++..+ .+.|-+|+|.++++|++.++|.||++||||++......+ ..
T Consensus 127 ~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~ef~eVla~r~~H~~~~~~~ksd~f~~c~L~p~ 206 (295)
T KOG0648|consen 127 KEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDTEFVEVLAFRRAHNATFGLIKSDMFFTCELRPR 206 (295)
T ss_pred ceeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhCcchhhhhHHHHHhhhcchhhcccccceeEEEeecc
Confidence 5899998643 488999999999999999999999999999976544400 00
Q ss_pred -----cCCCceeeEEEEeHhHHHhhc
Q 030947 114 -----WPEKNVRSRKWMSVAEARKVC 134 (168)
Q Consensus 114 -----~~e~e~~~~~W~~~~e~~~~~ 134 (168)
.++.++..+.|+++++.....
T Consensus 207 s~~i~~~~~ei~~~~Wmp~~e~v~qp 232 (295)
T KOG0648|consen 207 SLDITKCKREIEAAAWMPIEEYVSQP 232 (295)
T ss_pred ccccchhHHHHHHHhcccHHHhhccc
Confidence 022255567999999887765
No 89
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=98.37 E-value=4.4e-06 Score=59.41 Aligned_cols=80 Identities=19% Similarity=0.241 Sum_probs=54.9
Q ss_pred EEEEEEEeC----CCceeccceeccCCCCHHHHHHHHHHHHHcCcc----ceec-------ccccc----CC--CceeeE
Q 030947 64 EVLVISSQK----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTG----IVED-------QLAEW----PE--KNVRSR 122 (168)
Q Consensus 64 ~vLLv~r~~----~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~----~~~~-------~~~~~----~e--~e~~~~ 122 (168)
++||.+|.. .|.|+||+|.++.+++..++..|++.++.++.. .+.. .+..| .. .+..+.
T Consensus 15 ~~ll~kR~~~gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~fth~~~~~~~~~~~~~~~~~~~~~~ 94 (118)
T cd03431 15 RVLLEKRPEKGLLAGLWEFPSVEWEEEADGEEALLSALKKALRLSLEPLGTVKHTFTHFRLTLHVYLARLEGDLLAPDEG 94 (118)
T ss_pred eEEEEECCCCCCCCcceeCCCccccCCcCHHHHHHHHHHHHhCcccccceeEEEecCCeEEEEEEEEEEEeCCCcCcccc
Confidence 799999864 378999999999999999999999999875211 1111 11111 11 244567
Q ss_pred EEEeHhHHHhhcCChhHHHHH
Q 030947 123 KWMSVAEARKVCQHWWMKEAL 143 (168)
Q Consensus 123 ~W~~~~e~~~~~~~~~~~~~l 143 (168)
.|++++++..+.....++.++
T Consensus 95 ~W~~~eel~~~~~p~~~~kil 115 (118)
T cd03431 95 RWVPLEELDEYALPTVMRKIL 115 (118)
T ss_pred EEccHHHHhhCCCCHHHHHHH
Confidence 999999999876555444444
No 90
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=97.99 E-value=6.3e-06 Score=66.74 Aligned_cols=39 Identities=26% Similarity=0.283 Sum_probs=37.2
Q ss_pred eEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHH
Q 030947 63 LEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEA 101 (168)
Q Consensus 63 ~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEt 101 (168)
++++.+++.+.+.|.+|||.+++||.+-.+.+||+.||+
T Consensus 139 le~vavkr~d~~~WAiPGGmvdpGE~vs~tLkRef~eEa 177 (275)
T KOG4195|consen 139 LEFVAVKRPDNGEWAIPGGMVDPGEKVSATLKREFGEEA 177 (275)
T ss_pred eEEEEEecCCCCcccCCCCcCCchhhhhHHHHHHHHHHH
Confidence 688999999999999999999999999999999999995
No 91
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=97.44 E-value=3.7e-05 Score=65.41 Aligned_cols=82 Identities=28% Similarity=0.355 Sum_probs=62.4
Q ss_pred ceeEEEEEEEEeeccccccccccCceEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCccceec--------
Q 030947 38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVED-------- 109 (168)
Q Consensus 38 ~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~-------- 109 (168)
..+..|++++... --++||++......|.||.|++..+|+-.+||.||+.||||.+..-.-
T Consensus 81 ~iPv~ga~ild~~-----------~sr~llv~g~qa~sw~fprgK~~kdesd~~caiReV~eetgfD~skql~~~e~Ie~ 149 (348)
T KOG2937|consen 81 RIPVRGAIILDEK-----------RSRCLLVKGWQASSWSFPRGKISKDESDSDCAIREVTEETGFDYSKQLQDNEGIET 149 (348)
T ss_pred CCCCchHhhhhhh-----------hhhhheeeceecccccccCccccccchhhhcchhcccchhhcCHHHHhccccCccc
Confidence 3456777777643 347999998888789999999999999999999999999999863111
Q ss_pred ----cc-------------cccC--CCceeeEEEEeHhHH
Q 030947 110 ----QL-------------AEWP--EKNVRSRKWMSVAEA 130 (168)
Q Consensus 110 ----~~-------------~~~~--e~e~~~~~W~~~~e~ 130 (168)
++ ...+ -.|+..+.|+.++++
T Consensus 150 nI~dq~~~~fIi~gvs~d~~f~~~v~~eis~ihW~~l~~l 189 (348)
T KOG2937|consen 150 NIRDQLVRLFIINGVSEDTNFNPRVRKEISKIHWHYLDHL 189 (348)
T ss_pred chhhceeeeeeeccceeeeecchhhhccccceeeeehhhh
Confidence 00 0001 227788999999998
No 92
>PLN02839 nudix hydrolase
Probab=97.42 E-value=0.00036 Score=60.57 Aligned_cols=76 Identities=22% Similarity=0.240 Sum_probs=54.1
Q ss_pred CceEEEEEEEeC-----CCceec-cceeccCCCCHHHHHHHHHHHHHcCccceec---------c---------------
Q 030947 61 EDLEVLVISSQK-----GKGMLF-PKGGWEIDESIQEAALRETIEEAGVTGIVED---------Q--------------- 110 (168)
Q Consensus 61 ~~~~vLLv~r~~-----~~~W~l-PgG~ve~gEt~~~aA~REl~EEtGi~~~~~~---------~--------------- 110 (168)
++.++.+-||.. +|.|.- .+|++..||++.++++||.+||+|+.....+ .
T Consensus 216 g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~~G~VsY~~~~~~g~~~evly~ 295 (372)
T PLN02839 216 GQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKAIADRAIAVGAVSYMDIDQYCFKRDVLFC 295 (372)
T ss_pred CCeEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceEeEEEEEEEEcCCccccCEEEE
Confidence 445666666652 366653 4899999999999999999999999754222 0
Q ss_pred --cc---cc----CCCceeeEEEEeHhHHHhhcCC
Q 030947 111 --LA---EW----PEKNVRSRKWMSVAEARKVCQH 136 (168)
Q Consensus 111 --~~---~~----~e~e~~~~~W~~~~e~~~~~~~ 136 (168)
+. .+ .+.|..++.+++++|+.+.+..
T Consensus 296 YDLeLP~df~P~~qDGEVe~F~Lm~v~EV~~~l~~ 330 (372)
T PLN02839 296 YDLELPQDFVPKNQDGEVESFKLIPVAQVANVIRK 330 (372)
T ss_pred eeeecCCccccCCCccceeEEEEecHHHHHHHHHc
Confidence 00 01 2337788999999999887643
No 93
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=97.12 E-value=0.0011 Score=52.68 Aligned_cols=70 Identities=21% Similarity=0.230 Sum_probs=46.0
Q ss_pred hccccccccccC-CceeEEEEE-EEEeeccccccccccCceEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHc
Q 030947 25 SRTGRHLQRYQK-GRRQVVGCI-PYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAG 102 (168)
Q Consensus 25 ~~~g~~~~r~~~-~~r~~~g~v-~~~~~~~~~g~v~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtG 102 (168)
++..+-...|.+ +-|-+|.+| +++.. +..+|||++... ..|.||||.+..||+..++.+|-+.+-.|
T Consensus 28 ~rl~rl~~~y~~~GmRrsVe~Vllvh~h----------~~PHvLLLq~~~-~~fkLPGg~l~~gE~e~~gLkrkL~~~l~ 96 (188)
T PF13869_consen 28 ARLQRLKENYEKEGMRRSVEGVLLVHEH----------GHPHVLLLQIGN-TFFKLPGGRLRPGEDEIEGLKRKLTEKLS 96 (188)
T ss_dssp HHHHHHHHHHHHHSSEEEEEEEEEEEET----------TEEEEEEEEETT-TEEE-SEEE--TT--HHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHHhCCceEEEEEEEEecC----------CCcEEEEEeccC-ccccCCccEeCCCCChhHHHHHHHHHHcC
Confidence 344444445555 545555554 45443 667999999544 48999999999999999999999999998
Q ss_pred Ccc
Q 030947 103 VTG 105 (168)
Q Consensus 103 i~~ 105 (168)
...
T Consensus 97 ~~~ 99 (188)
T PF13869_consen 97 PED 99 (188)
T ss_dssp -SS
T ss_pred CCc
Confidence 864
No 94
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=96.73 E-value=0.0022 Score=50.33 Aligned_cols=89 Identities=15% Similarity=0.063 Sum_probs=62.7
Q ss_pred eeEEEEEEEEeeccccccccccCceEEEEEEEeC-----CCceecc-ceeccCCCCHHHHHHHHHHHHHcCccceec---
Q 030947 39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGMLFP-KGGWEIDESIQEAALRETIEEAGVTGIVED--- 109 (168)
Q Consensus 39 r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~-----~~~W~lP-gG~ve~gEt~~~aA~REl~EEtGi~~~~~~--- 109 (168)
+....+.+|+.+ +++||.||.. ++.|.=- -||--+||+..+||+|-+.+|.||......
T Consensus 33 HrAFS~~lFne~------------g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~ 100 (185)
T COG1443 33 HRAFSSFLFNER------------GQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKLE 100 (185)
T ss_pred HhhhheeEECCC------------CceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcccCccc
Confidence 567788898754 3778877763 3556432 456668999999999999999999876322
Q ss_pred cc--------------------------ccc---CCCceeeEEEEeHhHHHhhcCChhH
Q 030947 110 QL--------------------------AEW---PEKNVRSRKWMSVAEARKVCQHWWM 139 (168)
Q Consensus 110 ~~--------------------------~~~---~e~e~~~~~W~~~~e~~~~~~~~~~ 139 (168)
.+ ... ...|..+++|++++++.+++.++..
T Consensus 101 il~rf~YrA~~~~~~~E~Eic~V~~~~~~~~~~~npdEV~~~~wv~~e~l~~~~~~~~~ 159 (185)
T COG1443 101 ILPRFRYRAADPDGIVENEICPVLAARLDSALDPNPDEVMDYRWVSPEDLKEMVDATPW 159 (185)
T ss_pred cccceEEeccCCCCcceeeeeeEEEEeecCCCCCChHHhhheeccCHHHHHHhhcCCce
Confidence 00 000 1126778999999999998766444
No 95
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=96.48 E-value=0.0056 Score=43.85 Aligned_cols=80 Identities=14% Similarity=0.096 Sum_probs=39.9
Q ss_pred ceEEEEEEEeCC----CceeccceeccCCCCHHHHHHHHHHHHHcCccceec-------cc-------ccc----CCC--
Q 030947 62 DLEVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVED-------QL-------AEW----PEK-- 117 (168)
Q Consensus 62 ~~~vLLv~r~~~----~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~-------~~-------~~~----~e~-- 117 (168)
++++||.||..+ |.|+||.--.+...+ .+.+.+.+.+..|+...... .+ ..| ...
T Consensus 8 ~~~~Ll~kRp~~gll~GLwefP~~e~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~v~H~fSH~~~~~~~~~~~~~~~~~ 86 (114)
T PF14815_consen 8 QGRVLLEKRPEKGLLAGLWEFPLIESDEEDD-EEELEEWLEEQLGLSIRSVEPLGTVKHVFSHRRWTIHVYEVEVSADPP 86 (114)
T ss_dssp TSEEEEEE--SSSTTTT-EE--EEE-SSS-C-HHHHHHHTCCSSS-EEEE-S-SEEEEEE-SSEEEEEEEEEEEEE-SS-
T ss_pred CCEEEEEECCCCChhhcCcccCEeCccCCCC-HHHHHHHHHHHcCCChhhheecCcEEEEccceEEEEEEEEEEecCCCC
Confidence 448999998863 789999987764333 55555556566676543322 00 001 111
Q ss_pred -ceeeEEEEeHhHHHhhcCChhHHHH
Q 030947 118 -NVRSRKWMSVAEARKVCQHWWMKEA 142 (168)
Q Consensus 118 -e~~~~~W~~~~e~~~~~~~~~~~~~ 142 (168)
......|++++++.++.....++.+
T Consensus 87 ~~~~~~~W~~~~~l~~~~~p~~~~ki 112 (114)
T PF14815_consen 87 AEPEEGQWVSLEELDQYPLPTPMRKI 112 (114)
T ss_dssp ---TTEEEEEGGGGGGS---HHHHHH
T ss_pred CCCCCcEEEEHHHHhhCCCCHHHHHH
Confidence 2467899999999986655544433
No 96
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=94.84 E-value=0.059 Score=42.40 Aligned_cols=54 Identities=22% Similarity=0.227 Sum_probs=43.5
Q ss_pred ceeEEEEEEEEeeccccccccccCceEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHc
Q 030947 38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAG 102 (168)
Q Consensus 38 ~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtG 102 (168)
.|-+-|+++++.. +-.+|||++-.. -.+.+|||.+++||+-.+..+|-+-|-.|
T Consensus 69 RrsvegvlivheH----------~lPHvLLLQig~-tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lg 122 (221)
T KOG1689|consen 69 RRSVEGVLIVHEH----------NLPHVLLLQIGN-TFFKLPGGRLRPGEDEADGLKRLLTESLG 122 (221)
T ss_pred hheeeeeEEEeec----------CCCeEEEEeeCC-EEEecCCCccCCCcchhHHHHHHHHHHhc
Confidence 3455566666654 556899998654 47999999999999999999999999999
No 97
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=93.89 E-value=0.74 Score=36.09 Aligned_cols=69 Identities=28% Similarity=0.283 Sum_probs=46.3
Q ss_pred EEEEEEEeCC-------Cceecc-ceeccCCC---CHHHH----HHHHHHHHHcCccceec------------------c
Q 030947 64 EVLVISSQKG-------KGMLFP-KGGWEIDE---SIQEA----ALRETIEEAGVTGIVED------------------Q 110 (168)
Q Consensus 64 ~vLLv~r~~~-------~~W~lP-gG~ve~gE---t~~~a----A~REl~EEtGi~~~~~~------------------~ 110 (168)
+||+..|..+ +.+++- |||+..++ +..+. +.||+.||.++.-.... +
T Consensus 73 evliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGlINdd~neVgkVH 152 (203)
T COG4112 73 EVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGLINDDTNEVGKVH 152 (203)
T ss_pred EEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeeeecCCCcccceEE
Confidence 8999988642 456665 89998653 33332 78999999999732222 0
Q ss_pred --------cc----ccCCCceeeEEEEeHhHHHh
Q 030947 111 --------LA----EWPEKNVRSRKWMSVAEARK 132 (168)
Q Consensus 111 --------~~----~~~e~e~~~~~W~~~~e~~~ 132 (168)
.. ...+.+..+.+|+...++.+
T Consensus 153 iG~lf~~~~k~ndvevKEkd~~~~kwik~~ele~ 186 (203)
T COG4112 153 IGALFLGRGKFNDVEVKEKDLFEWKWIKLEELEK 186 (203)
T ss_pred EEEEEEeeccccceeeeecceeeeeeeeHHHHHH
Confidence 00 11344667889999999988
No 98
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=91.27 E-value=0.93 Score=37.69 Aligned_cols=42 Identities=17% Similarity=0.281 Sum_probs=35.6
Q ss_pred eEEEEEEEe--CCCceeccceec-cCCCCHHHHHHHHHHHHHcCc
Q 030947 63 LEVLVISSQ--KGKGMLFPKGGW-EIDESIQEAALRETIEEAGVT 104 (168)
Q Consensus 63 ~~vLLv~r~--~~~~W~lPgG~v-e~gEt~~~aA~REl~EEtGi~ 104 (168)
.-+||+++. ..+.|.||-+.. +.++++..+|.|+++.-.|=.
T Consensus 139 ~LyLLV~~k~g~~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~ 183 (263)
T KOG4548|consen 139 KLYLLVKRKFGKSSVWIFPNRQFSSSEKTLRGHAERDLKVLSGEN 183 (263)
T ss_pred eEEEEEeeccCccceeeCCCcccCCccchHHHHHHHHHHHHhcch
Confidence 458888855 247899999999 899999999999999988754
No 99
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=79.50 E-value=2.8 Score=36.00 Aligned_cols=64 Identities=19% Similarity=0.099 Sum_probs=45.9
Q ss_pred eeccceeccCCCCHHHHHHHHHHHHHcCccceec---ccccc------------------------------CCCceeeE
Q 030947 76 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVED---QLAEW------------------------------PEKNVRSR 122 (168)
Q Consensus 76 W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~---~~~~~------------------------------~e~e~~~~ 122 (168)
.+|..|.|+..-+..+-|.||..||+|++..... +..+| .+.|..+.
T Consensus 286 lELcag~Vd~p~s~~e~a~~e~veecGYdlp~~~~k~va~y~sGVG~SG~~QTmfy~eVTdA~rsgpGgg~~ee~E~IEv 365 (405)
T KOG4432|consen 286 LELCAGRVDDPFSDPEKAARESVEECGYDLPEDSFKLVAKYISGVGQSGDTQTMFYVEVTDARRSGPGGGEKEEDEDIEV 365 (405)
T ss_pred eeeecccCCCCcccHHHHHHHHHHHhCCCCCHHHHhhhheeecccCCcCCeeEEEEEEeehhhccCCCCCcccccceeeE
Confidence 6777899998899999999999999999853222 11111 22355567
Q ss_pred EEEeHhHHHhhcCChhH
Q 030947 123 KWMSVAEARKVCQHWWM 139 (168)
Q Consensus 123 ~W~~~~e~~~~~~~~~~ 139 (168)
.=+++++++.+...+++
T Consensus 366 v~lsle~a~~~~~q~~I 382 (405)
T KOG4432|consen 366 VRLSLEDAPSLYRQHNI 382 (405)
T ss_pred EEechhhhhHHHhccCC
Confidence 77888999888765544
No 100
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=77.91 E-value=2.2 Score=36.63 Aligned_cols=33 Identities=24% Similarity=0.136 Sum_probs=29.4
Q ss_pred eeccceeccCCCCHHHHHHHHHHHHHcCcccee
Q 030947 76 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVE 108 (168)
Q Consensus 76 W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~ 108 (168)
.+|.+|.+++.-|+.+-|.-|+.||+|+.+...
T Consensus 81 ielc~g~idke~s~~eia~eev~eecgy~v~~d 113 (405)
T KOG4432|consen 81 IELCAGLIDKELSPREIASEEVAEECGYRVDPD 113 (405)
T ss_pred eeeeccccccccCHHHHhHHHHHHHhCCcCChh
Confidence 567899999999999999999999999987533
No 101
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=73.56 E-value=3 Score=33.75 Aligned_cols=49 Identities=20% Similarity=0.371 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHHHcCccceec--cc-------------ccc------------------C-CCceeeEEEEeHhHHHhh
Q 030947 88 SIQEAALRETIEEAGVTGIVED--QL-------------AEW------------------P-EKNVRSRKWMSVAEARKV 133 (168)
Q Consensus 88 t~~~aA~REl~EEtGi~~~~~~--~~-------------~~~------------------~-e~e~~~~~W~~~~e~~~~ 133 (168)
-...||.|-++-|.||.....+ .+ ..| | ..|..+++|++.+|+.++
T Consensus 104 GVr~AAqRkL~~ELGIp~e~v~pee~~~ltrihYkA~sdg~wGEhEiDYiL~~~~~~~~nPnpnEv~e~ryvs~eelkel 183 (225)
T KOG0142|consen 104 GVRRAAQRKLKAELGIPLEEVPPEEFNFLTRIHYKAPSDGIWGEHEIDYILFLVKDVTLNPNPNEVSEIRYVSREELKEL 183 (225)
T ss_pred HHHHHHHHHHHHhhCCCccccCHHHcccceeeeeecCCCCCcccceeeEEEEEeccCCCCCChhhhhHhheecHHHHHHH
Confidence 4678999999999999865444 00 011 1 136778999999999998
Q ss_pred cCC
Q 030947 134 CQH 136 (168)
Q Consensus 134 ~~~ 136 (168)
+..
T Consensus 184 ~~~ 186 (225)
T KOG0142|consen 184 VAK 186 (225)
T ss_pred Hhc
Confidence 744
No 102
>PRK10880 adenine DNA glycosylase; Provisional
Probab=66.40 E-value=35 Score=29.67 Aligned_cols=73 Identities=18% Similarity=0.234 Sum_probs=39.3
Q ss_pred EEEEEEEeC----CCceeccceeccCCCCHHHHHHHHHHHHHcCccce-------ec-------ccccc----CC----C
Q 030947 64 EVLVISSQK----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIV-------ED-------QLAEW----PE----K 117 (168)
Q Consensus 64 ~vLLv~r~~----~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~-------~~-------~~~~~----~e----~ 117 (168)
++||.+|.. .|.|+||.. +.. + ..++..|+.|+.... .+ .+..+ .. .
T Consensus 243 ~~~l~~r~~~gl~~gl~~fP~~--~~~----~-~~~~~~~~~~~~~~~~~~~~~~~H~fTH~~~~~~~~~~~~~~~~~~~ 315 (350)
T PRK10880 243 EVWLEQRPPSGLWGGLFCFPQF--ADE----E-ELRQWLAQRGIAADNLTQLTAFRHTFSHFHLDIVPMWLPVSSFTGCM 315 (350)
T ss_pred EEEEEECCccChhhccccCCCC--cch----h-hHHHHHHhcCCchhhhcccCceEEEEeeEEEEEEEEEEEcccccccc
Confidence 788888864 378999963 211 1 235555776764211 11 01011 10 0
Q ss_pred ceeeEEEEeHhHHHhhcCChhHHHHH
Q 030947 118 NVRSRKWMSVAEARKVCQHWWMKEAL 143 (168)
Q Consensus 118 e~~~~~W~~~~e~~~~~~~~~~~~~l 143 (168)
......|++++++.++.....++.++
T Consensus 316 ~~~~~~w~~~~~~~~~~~p~~~~k~l 341 (350)
T PRK10880 316 DEGNGLWYNLAQPPSVGLAAPVERLL 341 (350)
T ss_pred CCcCCeEechHHhcccCCcHHHHHHH
Confidence 11234699999999976655444444
No 103
>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]
Probab=63.93 E-value=15 Score=30.87 Aligned_cols=45 Identities=24% Similarity=0.305 Sum_probs=34.1
Q ss_pred ceEEEEEEEeCC-----Ccee-ccceeccCCCCHHHHHHHHHHHHHcCccc
Q 030947 62 DLEVLVISSQKG-----KGML-FPKGGWEIDESIQEAALRETIEEAGVTGI 106 (168)
Q Consensus 62 ~~~vLLv~r~~~-----~~W~-lPgG~ve~gEt~~~aA~REl~EEtGi~~~ 106 (168)
..++.+-||++. +.|. .-+|++..|-.+.++|+.|..||+.++..
T Consensus 147 ~l~iWvprRS~TKqTWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~~ 197 (306)
T KOG4313|consen 147 PLCIWVPRRSNTKQTWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPSD 197 (306)
T ss_pred ceEEEecccCCccccCcchhhhhhccccccCchHHHHHHHHHHHhcCCchh
Confidence 356666666542 3343 34888999999999999999999999863
No 104
>PF14443 DBC1: DBC1
Probab=61.57 E-value=12 Score=27.89 Aligned_cols=45 Identities=22% Similarity=0.144 Sum_probs=32.0
Q ss_pred ceEEEEEEEeC-----CCceecc--ceeccCC-CCHHHHHHHHHHHHHcCccc
Q 030947 62 DLEVLVISSQK-----GKGMLFP--KGGWEID-ESIQEAALRETIEEAGVTGI 106 (168)
Q Consensus 62 ~~~vLLv~r~~-----~~~W~lP--gG~ve~g-Et~~~aA~REl~EEtGi~~~ 106 (168)
-+++|+.++.+ +|.|..- ||--..+ ..+..+|+|=+++-|||+..
T Consensus 7 ~lkFlv~~k~ke~~aiGG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS 59 (126)
T PF14443_consen 7 LLKFLVGKKDKEIMAIGGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDLS 59 (126)
T ss_pred heeeEEeecCceEEecCCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccchh
Confidence 35677776654 3677765 5554443 45899999999999999854
No 105
>PF07026 DUF1317: Protein of unknown function (DUF1317); InterPro: IPR009750 This entry is represented by Bacteriophage lambda, Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=58.73 E-value=21 Score=23.17 Aligned_cols=25 Identities=28% Similarity=0.230 Sum_probs=16.4
Q ss_pred CCCceeccceeccCCCCHHHHHHHHHHH
Q 030947 72 KGKGMLFPKGGWEIDESIQEAALRETIE 99 (168)
Q Consensus 72 ~~~~W~lPgG~ve~gEt~~~aA~REl~E 99 (168)
....|.+|||.+-.+-. .|.|..+|
T Consensus 20 ~~~GWl~Pgg~vi~NPl---kAqR~AE~ 44 (60)
T PF07026_consen 20 FKNGWLMPGGKVITNPL---KAQRLAEE 44 (60)
T ss_pred ccceeecCCCeeEcCHH---HHHHHHHH
Confidence 34579999999886643 35554433
No 106
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=58.33 E-value=10 Score=22.68 Aligned_cols=24 Identities=29% Similarity=0.147 Sum_probs=11.9
Q ss_pred ccceeccCCCCHHHHHHHHHHHHH
Q 030947 78 FPKGGWEIDESIQEAALRETIEEA 101 (168)
Q Consensus 78 lPgG~ve~gEt~~~aA~REl~EEt 101 (168)
.-||-..+|--+...+.||+.||.
T Consensus 13 ClggLasPgPvp~~~alkELIeEL 36 (43)
T PF03487_consen 13 CLGGLASPGPVPSSTALKELIEEL 36 (43)
T ss_dssp ----------S-HHHHHHHHHHHH
T ss_pred HhcccCCCCCCCchHHHHHHHHHH
Confidence 347777888888899999999995
No 107
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=29.29 E-value=13 Score=32.31 Aligned_cols=34 Identities=32% Similarity=0.410 Sum_probs=31.3
Q ss_pred CCceeccceeccCCCCHHHHHHHHHHHHHcCccc
Q 030947 73 GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGI 106 (168)
Q Consensus 73 ~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~ 106 (168)
+..|.||.|++..||-+..++.|+-.||+|++..
T Consensus 263 ~e~~~~~~~k~sr~e~~r~~si~s~~~e~~f~~~ 296 (348)
T KOG2937|consen 263 PENWTFPKGKISRGEKPRDASIRSTFEEPGFPFG 296 (348)
T ss_pred cccccCcccccccCCccccchhhhcCCCcCCccc
Confidence 4679999999999999999999999999999854
No 108
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=27.79 E-value=37 Score=28.95 Aligned_cols=35 Identities=17% Similarity=-0.029 Sum_probs=31.3
Q ss_pred CceeccceeccCCCCHHHHHHHHHHHHHcCccceec
Q 030947 74 KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVED 109 (168)
Q Consensus 74 ~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~ 109 (168)
..|.. .|+...++++.+++.|++.+++|...++..
T Consensus 55 ~~W~~-~Gr~~iwl~l~~~~~~lV~~a~~~gf~~hH 89 (295)
T KOG0648|consen 55 QKWYL-QGRKGIWLKLPEELARLVEEAAKYGFDYHH 89 (295)
T ss_pred HHHHH-ccCcccceechHHHHhHHHHHHhcCcEEec
Confidence 37999 999999999999999999999999876554
No 109
>COG4111 Uncharacterized conserved protein [General function prediction only]
Probab=25.61 E-value=1.6e+02 Score=24.97 Aligned_cols=50 Identities=22% Similarity=0.256 Sum_probs=36.0
Q ss_pred CceEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHH-HcCccceecccccc
Q 030947 61 EDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEE-AGVTGIVEDQLAEW 114 (168)
Q Consensus 61 ~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EE-tGi~~~~~~~~~~~ 114 (168)
++.+||-+..... +|.|-.++.--..++-.|..-|+ |+......+++..|
T Consensus 35 ~~p~VLtV~q~~a----LP~GPfep~hrslq~glr~wV~~qT~~plGYiEQLYTF 85 (322)
T COG4111 35 GGPRVLTVRQGAA----LPSGPFEPAHRSLQAGLRAWVEKQTSQPLGYIEQLYTF 85 (322)
T ss_pred CCceEEEeccccc----CCCCCCchHHHHHHHHHHHHHHHHhcCccchHHhhhhh
Confidence 5678888876543 99999998877777777776554 88776666655433
No 110
>PF14044 NETI: NETI protein
Probab=24.46 E-value=69 Score=20.63 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=16.7
Q ss_pred eccCCCCHHHHHHHHHHHHHcCcc
Q 030947 82 GWEIDESIQEAALRETIEEAGVTG 105 (168)
Q Consensus 82 ~ve~gEt~~~aA~REl~EEtGi~~ 105 (168)
.|+.+||+.+|+.| +++| |+..
T Consensus 3 eV~enETI~~CL~R-M~~e-GY~P 24 (57)
T PF14044_consen 3 EVEENETISDCLAR-MKKE-GYMP 24 (57)
T ss_pred eccCCCcHHHHHHH-HHHc-CCCc
Confidence 47789999999999 4444 7753
No 111
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=22.05 E-value=2.4e+02 Score=23.60 Aligned_cols=19 Identities=32% Similarity=0.300 Sum_probs=14.7
Q ss_pred eEEEEEEEeC----CCceeccce
Q 030947 63 LEVLVISSQK----GKGMLFPKG 81 (168)
Q Consensus 63 ~~vLLv~r~~----~~~W~lPgG 81 (168)
.++||.++.. .|.|+||+-
T Consensus 239 ~~~~~~~r~~~~~~~gl~~~p~~ 261 (275)
T TIGR01084 239 GEVLLEQRPEKGLWGGLYCFPQF 261 (275)
T ss_pred CeEEEEeCCCCchhhccccCCCC
Confidence 3789988865 378999973
No 112
>KOG0753 consensus Mitochondrial fatty acid anion carrier protein/Uncoupling protein [Energy production and conversion]
Probab=21.91 E-value=1.3e+02 Score=25.88 Aligned_cols=59 Identities=14% Similarity=0.278 Sum_probs=40.9
Q ss_pred eeccceeccCCCCHHHHHHHHHHHHHcCccceeccccccCCCce-eeEEEEeHhHHHhhcC
Q 030947 76 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLAEWPEKNV-RSRKWMSVAEARKVCQ 135 (168)
Q Consensus 76 W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~~~~~e~e~-~~~~W~~~~e~~~~~~ 135 (168)
-.-|.|+...-.+..+|+.+-+++| |+-.-..-++..|---.. .-+.|++++++.++..
T Consensus 254 MNqp~g~~~~Ykgs~DC~~k~v~~E-G~~AlYKGF~Psw~RlGpWnvifwvtyEQlrr~~g 313 (317)
T KOG0753|consen 254 MNQPPGRGGLYKGSLDCLIKTVKNE-GFFALYKGFIPSWLRLGPWNVIFWVTYEQLRRLLG 313 (317)
T ss_pred ccCCCCcCccccchHHHHHHHHHhc-ChHHHHccccccceecCCeeeeeeeeHHHHHHHhc
Confidence 3345588777889999999999999 765544334444533222 2368999999988753
No 113
>PF12860 PAS_7: PAS fold
Probab=20.94 E-value=35 Score=23.55 Aligned_cols=35 Identities=11% Similarity=0.045 Sum_probs=27.9
Q ss_pred CceEEEEEEEeCCCceeccceeccCCCCHHHHHHH
Q 030947 61 EDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALR 95 (168)
Q Consensus 61 ~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~R 95 (168)
.+.++++.+++....|.+|...+..|-+..+.+.+
T Consensus 13 ~~~rl~~~N~~~~~l~~~~~~~~~~G~~~~~l~~~ 47 (115)
T PF12860_consen 13 SDGRLVFWNQRFRELFGLPPEMLRPGASFRDLLRR 47 (115)
T ss_pred CCCeEEeEcHHHHHHhCCCHHHhcCCCCHHHHHHH
Confidence 34478888888778899999999999987776554
Done!