BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030948
(168 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CI1|A Chain A, Crystal Structure Of Dimethylarginine
Dimethylaminohydrolase I In Complex With S-Nitroso-
Lhomocysteine
Length = 276
Score = 33.1 bits (74), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 91 EEAQDELTLIGKMIE--WDPWGVPDDYECEVIENDAPVPKHVPLHRPGPLPEEF 142
E AQ L ++ +M + +D VPDD I + P HV LHR PEE+
Sbjct: 185 ESAQKALKIMQQMSDHRYDKLTVPDDTAANCIYLNIPSKGHVLLHRT---PEEY 235
>pdb|2C6Z|A Chain A, Crystal Structure Of Dimethylarginine
Dimethylaminohydrolase I In Complex With Citrulline
pdb|2CI3|A Chain A, Crystal Structure Of Dimethylarginine
Dimethylaminohydrolase Crystal Form I
pdb|2CI4|A Chain A, Crystal Structure Of Dimethylarginine
Dimethylaminohydrolase I Crystal Form Ii
pdb|2CI5|A Chain A, Crystal Structure Of Dimethylarginine
Dimethylaminohydrolase I In Complex With L-Homocysteine
pdb|2CI5|B Chain B, Crystal Structure Of Dimethylarginine
Dimethylaminohydrolase I In Complex With L-Homocysteine
pdb|2CI6|A Chain A, Crystal Structure Of Dimethylarginine
Dimethylaminohydrolase I Bound With Zinc Low Ph
pdb|2CI7|A Chain A, Crystal Structure Of Dimethylarginine
Dimethylaminohydrolase I In Complex With Zinc, High Ph
Length = 284
Score = 32.7 bits (73), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 91 EEAQDELTLIGKMIE--WDPWGVPDDYECEVIENDAPVPKHVPLHRPGPLPEEF 142
E AQ L ++ +M + +D VPDD I + P HV LHR PEE+
Sbjct: 191 ESAQKALKIMQQMSDHRYDKLTVPDDTAANCIYLNIPSKGHVLLHRT---PEEY 241
>pdb|3P8P|A Chain A, Crystal Structure Of Human Dimethylarginine
Dimethylaminohydrolase-1 (Ddah-1) Variant C274s Bound
With N5-(1-Iminopentyl)-L-Ornithine
pdb|3P8P|B Chain B, Crystal Structure Of Human Dimethylarginine
Dimethylaminohydrolase-1 (Ddah-1) Variant C274s Bound
With N5-(1-Iminopentyl)-L-Ornithine
Length = 308
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 91 EEAQDELTLIGKMIE--WDPWGVPDDYECEVIENDAPVPKHVPLHRPGPLPEEF 142
E AQ L ++ +M + +D VPDD I + P HV LHR PEE+
Sbjct: 215 ESAQKALKIMQQMSDHRYDKLTVPDDIAANCIYLNIPNKGHVLLHRT---PEEY 265
>pdb|3I2E|A Chain A, Crystal Structure Of Human Dimethylarginine
Dymethylaminohydrolase-1 (Ddah-1)
pdb|3I2E|B Chain B, Crystal Structure Of Human Dimethylarginine
Dymethylaminohydrolase-1 (Ddah-1)
pdb|3I4A|A Chain A, Crystal Structure Of Dimethylarginine
Dimethylaminohydrolase-1 (Ddah-1) In Complex With N5-(1-
Iminopropyl)-L-Ornithine
pdb|3I4A|B Chain B, Crystal Structure Of Dimethylarginine
Dimethylaminohydrolase-1 (Ddah-1) In Complex With N5-(1-
Iminopropyl)-L-Ornithine
pdb|3P8E|A Chain A, Crystal Structure Of Human Dimethylarginine
Dimethylaminohydrolase-1 (Ddah-1) Covalently Bound With
N5-(1-Iminopentyl)-L-Ornithine
pdb|3P8E|B Chain B, Crystal Structure Of Human Dimethylarginine
Dimethylaminohydrolase-1 (Ddah-1) Covalently Bound With
N5-(1-Iminopentyl)-L-Ornithine
Length = 308
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 91 EEAQDELTLIGKMIE--WDPWGVPDDYECEVIENDAPVPKHVPLHRPGPLPEEF 142
E AQ L ++ +M + +D VPDD I + P HV LHR PEE+
Sbjct: 215 ESAQKALKIMQQMSDHRYDKLTVPDDIAANCIYLNIPNKGHVLLHRT---PEEY 265
>pdb|2JAJ|A Chain A, Ddah1 Complexed With L-257
pdb|2JAJ|B Chain B, Ddah1 Complexed With L-257
Length = 289
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 91 EEAQDELTLIGKMIE--WDPWGVPDDYECEVIENDAPVPKHVPLHRPGPLPEEF 142
E AQ L ++ +M + +D VPDD I + P HV LHR PEE+
Sbjct: 196 ESAQKALKIMQQMSDHRYDKLTVPDDIAANCIYLNIPNKGHVLLHRT---PEEY 246
>pdb|3DB2|A Chain A, Crystal Structure Of A Putative Nadph-Dependent
Oxidoreductase (Dhaf_2064) From Desulfitobacterium
Hafniense Dcb-2 At 1.70 A Resolution
pdb|3DB2|B Chain B, Crystal Structure Of A Putative Nadph-Dependent
Oxidoreductase (Dhaf_2064) From Desulfitobacterium
Hafniense Dcb-2 At 1.70 A Resolution
pdb|3DB2|C Chain C, Crystal Structure Of A Putative Nadph-Dependent
Oxidoreductase (Dhaf_2064) From Desulfitobacterium
Hafniense Dcb-2 At 1.70 A Resolution
Length = 354
Score = 30.4 bits (67), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 8/105 (7%)
Query: 64 RLKVC--QEEEDWEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPWGVPDDYECEVIE 121
+L C + E+ E+ KR C +A E L + +E VP+D EVIE
Sbjct: 31 KLVTCYSRTEDKREKFGKRYNCAG------DATXEALLAREDVEXVIITVPNDKHAEVIE 84
Query: 122 NDAPVPKHVPLHRPGPLPEEFHKTLEAVTKKDPTAVTSSESQSRL 166
A KH+ + +P + + + ++ V K+ S RL
Sbjct: 85 QCARSGKHIYVEKPISVSLDHAQRIDQVIKETGVKFLCGHSSRRL 129
>pdb|2JAI|A Chain A, Ddah1 Complexed With Citrulline
pdb|2JAI|B Chain B, Ddah1 Complexed With Citrulline
Length = 289
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 106 WDPWGVPDDYECEVIENDAPVPKHVPLHRPGPLPEEF 142
+D VPDD I + P HV LHR PEE+
Sbjct: 213 YDKLTVPDDIAANCIYLNIPNKGHVLLHRT---PEEY 246
>pdb|3E0D|A Chain A, Insights Into The Replisome From The Crystral Structure Of
The Ternary Complex Of The Eubacterial Dna Polymerase
Iii Alpha-Subunit
pdb|3E0D|B Chain B, Insights Into The Replisome From The Crystral Structure Of
The Ternary Complex Of The Eubacterial Dna Polymerase
Iii Alpha-Subunit
Length = 1220
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 12/74 (16%)
Query: 36 LYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEEDWEQIEKRL----GCGQ--VEEL 89
Y + L+ + +PP R E+ R EE+ WE++ KRL G + E +
Sbjct: 330 FYREVLRLLGTMPPHGDERALAEALARV------EEKAWEELRKRLPPLEGVREWTAEAI 383
Query: 90 IEEAQDELTLIGKM 103
+ A EL++I +M
Sbjct: 384 LHRALYELSVIERM 397
>pdb|2HPI|A Chain A, Eubacterial And Eukaryotic Replicative Dna Polymerases Are
Not Homologous: X-Ray Structure Of Dna Polymerase Iii
pdb|2HPM|A Chain A, Eubacterial And Eukaryotic Replicative Dna Polymerases Are
Not Homologous: X-ray Structure Of Dna Polymerase Iii
Length = 1220
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 12/74 (16%)
Query: 36 LYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEEDWEQIEKRL----GCGQ--VEEL 89
Y + L+ + +PP R E+ R EE+ WE++ KRL G + E +
Sbjct: 330 FYREVLRLLGTMPPHGDERALAEALARV------EEKAWEELRKRLPPLEGVREWTAEAI 383
Query: 90 IEEAQDELTLIGKM 103
+ A EL++I +M
Sbjct: 384 LHRALYELSVIERM 397
>pdb|4EU1|A Chain A, Structure Of A Mitochondrial Aspartate Aminotransferase
From Trypanosoma Brucei
pdb|4EU1|B Chain B, Structure Of A Mitochondrial Aspartate Aminotransferase
From Trypanosoma Brucei
Length = 409
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 8/46 (17%)
Query: 65 LKVCQEEEDWEQIEKRLGCG--------QVEELIEEAQDELTLIGK 102
LK C DW IE+++G QVE L E +TL G+
Sbjct: 341 LKACGSVHDWSHIERQVGMMAYTGLTREQVELLRSEYHIYMTLNGR 386
>pdb|1XFO|A Chain A, Crystal Structure Of An Archaeal Aminopeptidase
pdb|1XFO|B Chain B, Crystal Structure Of An Archaeal Aminopeptidase
pdb|1XFO|C Chain C, Crystal Structure Of An Archaeal Aminopeptidase
pdb|1XFO|D Chain D, Crystal Structure Of An Archaeal Aminopeptidase
Length = 357
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 73 DWEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWD 107
DW+QI +G E EEA+D IG +I WD
Sbjct: 139 DWDQIFIDIGA----ESKEEAEDMGVKIGTVITWD 169
>pdb|1Y0R|A Chain A, Crystal Structure Of The Tetrahedral Aminopeptidase From
P. Horikoshii
pdb|1Y0Y|A Chain A, Crystal Structure Of Tetrahedral Aminopeptidase From P.
Horikoshii In Complex With Amastatin
Length = 353
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 73 DWEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWD 107
DW+QI +G E EEA+D IG +I WD
Sbjct: 135 DWDQIFIDIGA----ESKEEAEDMGVKIGTVITWD 165
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,220,404
Number of Sequences: 62578
Number of extensions: 218110
Number of successful extensions: 562
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 557
Number of HSP's gapped (non-prelim): 26
length of query: 168
length of database: 14,973,337
effective HSP length: 92
effective length of query: 76
effective length of database: 9,216,161
effective search space: 700428236
effective search space used: 700428236
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (23.1 bits)