BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030948
(168 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FLX7|NDUA5_ARATH Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit
5, mitochondrial OS=Arabidopsis thaliana GN=At5g52840
PE=1 SV=1
Length = 169
Score = 282 bits (721), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 137/169 (81%), Positives = 151/169 (89%), Gaps = 1/169 (0%)
Query: 1 MFLRVIGRPLMAKVKQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESF 60
MFLR IGRPL+AKVKQTTGI GLDVVPNAR VLI+LY+KTLKEIQAVP DEGYRKAVESF
Sbjct: 1 MFLRAIGRPLLAKVKQTTGIVGLDVVPNARAVLIDLYSKTLKEIQAVPEDEGYRKAVESF 60
Query: 61 TRQRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPWGVPDDYECEVI 120
TRQRL VC+EEEDWE IEKRLGCGQVEELIEEA+DELTLIGKMIEWDPWGVPDDYECEVI
Sbjct: 61 TRQRLNVCKEEEDWEMIEKRLGCGQVEELIEEARDELTLIGKMIEWDPWGVPDDYECEVI 120
Query: 121 ENDAPVPKHVPLHRPGPLPEEFHKTLEAVTKKDPTAV-TSSESQSRLKE 168
ENDAP+PKHVP HRPGPLPE+F+KTLE + + T + ++ S +LKE
Sbjct: 121 ENDAPIPKHVPQHRPGPLPEQFYKTLEGLIAESKTEIPAATPSDPQLKE 169
>sp|Q559Z4|NDUA5_DICDI Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit
5 OS=Dictyostelium discoideum GN=ndufa5 PE=3 SV=1
Length = 117
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 69/100 (69%)
Query: 14 VKQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEED 73
+K++TGITGL V PNAR +L LYN+ LK+++ +PP GYRK+ E T+ RL V + E D
Sbjct: 6 IKKSTGITGLKVEPNARHILAGLYNQLLKKLEILPPTAGYRKSAELETKFRLGVIENETD 65
Query: 74 WEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPWGVPD 113
+IE ++ GQ+EELI +A+++L ++ + E W +PD
Sbjct: 66 IVKIENKIYAGQIEELIVQAKNDLKVVDLVHESRAWELPD 105
>sp|P23935|NDUA5_BOVIN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Bos
taurus GN=NDUFA5 PE=1 SV=3
Length = 116
Score = 79.7 bits (195), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 61/96 (63%)
Query: 14 VKQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEED 73
+K+TTG+ GL V E L LY K L + +P + YRK E T ++L + + E D
Sbjct: 5 LKKTTGLVGLAVCETPHERLKILYTKILDVLGHIPKNAAYRKYTEQITNEKLSMVKAEPD 64
Query: 74 WEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPW 109
+++E+RL GQ+EE+I +A++EL+L KMI+W PW
Sbjct: 65 VKKLEERLQGGQIEEVILQAENELSLARKMIQWKPW 100
>sp|Q18359|NDUA5_CAEEL Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit
5 OS=Caenorhabditis elegans GN=C33A12.1 PE=3 SV=1
Length = 150
Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 60/95 (63%)
Query: 15 KQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEEDW 74
K+TTGITGL V + L +Y + L+ ++ +P D YRK E+ +QRL + Q E D
Sbjct: 40 KKTTGITGLFVNEHPHRALTVVYGRILRALEQIPRDAAYRKYTEAVVKQRLALVQAENDI 99
Query: 75 EQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPW 109
+++E+++G GQ+EE+IE+A+ EL +++ W
Sbjct: 100 KKLEEKIGMGQIEEVIEQAEYELETTRAIVDSKAW 134
>sp|Q9CPP6|NDUA5_MOUSE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Mus
musculus GN=Ndufa5 PE=1 SV=3
Length = 116
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 58/96 (60%)
Query: 14 VKQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEED 73
+K+TTG+ GL V E L LY KTL ++ P YRK E T ++L + + E D
Sbjct: 5 LKKTTGLVGLAVCDTPHERLTILYTKTLDILKHFPKHAAYRKYTEQITNEKLDMVKAEPD 64
Query: 74 WEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPW 109
+++E L G+VEE+I +A+ EL+L KM++W PW
Sbjct: 65 VKKLEALLQGGEVEEVILQAEKELSLARKMLKWKPW 100
>sp|Q63362|NDUA5_RAT NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5
OS=Rattus norvegicus GN=Ndufa5 PE=1 SV=3
Length = 116
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 58/96 (60%)
Query: 14 VKQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEED 73
VK+TTG+ GL V E L LY K L ++ P YRK E T ++L++ + E D
Sbjct: 5 VKKTTGLVGLAVCDTPHERLTILYTKILDLLKHFPKHAAYRKYTEQITSEKLELVKLEPD 64
Query: 74 WEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPW 109
+++E L G+VEE+I +A+ EL+L KM++W PW
Sbjct: 65 VKKLENLLQGGEVEEVILQAEKELSLARKMLQWKPW 100
>sp|Q4R5J1|NDUA5_MACFA NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5
OS=Macaca fascicularis GN=NDUFA5 PE=3 SV=3
Length = 116
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 58/96 (60%)
Query: 14 VKQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEED 73
+K+TTG+ GL V E L LY K L + +P + YRK E T ++L + + E D
Sbjct: 5 LKKTTGLVGLAVCSTPHERLSILYTKILDVLAEIPKNAAYRKYTEQITNEKLAMVKAEPD 64
Query: 74 WEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPW 109
+++E +L GQ+EE+I +A+ EL+L KM +W PW
Sbjct: 65 VKKLEDQLQGGQLEEVILQAEHELSLARKMRDWKPW 100
>sp|P0CB99|NDUA5_PONAB NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5
OS=Pongo abelii GN=NDUFA5 PE=3 SV=1
Length = 116
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 56/96 (58%)
Query: 14 VKQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEED 73
V QTTG+ GL V E L LY K L ++ +P + YRK E T ++L + + E D
Sbjct: 5 VGQTTGLVGLAVCNTPHERLRILYTKILDVLEEIPKNAAYRKYTEQITNEKLAMVKAEPD 64
Query: 74 WEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPW 109
+++E +L GQ+EE+I +A+ EL L KM EW W
Sbjct: 65 VKKLEDQLQGGQLEEVILQAEHELNLARKMKEWKLW 100
>sp|P0CC00|NDUA5_PONPY NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5
OS=Pongo pygmaeus GN=NDUFA5 PE=3 SV=1
Length = 116
Score = 70.1 bits (170), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 57/96 (59%)
Query: 14 VKQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEED 73
+K+TTG+ GL V E L LY K L ++ +P + YRK E T ++L + + E D
Sbjct: 5 LKKTTGLVGLAVCNTPHERLRILYTKILDVLEEIPKNAAYRKYTEQITNEKLAMVKAEPD 64
Query: 74 WEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPW 109
+++E +L GQ+EE+I +A+ EL L KM EW W
Sbjct: 65 VKKLEDQLQGGQLEEVILQAEHELNLARKMKEWKLW 100
>sp|Q0MQA2|NDUA5_PANTR NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Pan
troglodytes GN=NDUFA5 PE=3 SV=3
Length = 116
Score = 69.7 bits (169), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 57/96 (59%)
Query: 14 VKQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEED 73
+K+TTG+ GL V E L LY K L ++ +P + YRK E T ++L + + E D
Sbjct: 5 LKKTTGLVGLAVCNTPHERLRILYTKILDVLEEIPKNAAYRKYTEQITNEKLAMVKAEPD 64
Query: 74 WEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPW 109
+++E +L GQ+EE+I +A+ EL L KM EW W
Sbjct: 65 VKKLEDQLQGGQLEEVILQAEHELNLARKMREWKLW 100
>sp|Q16718|NDUA5_HUMAN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5
OS=Homo sapiens GN=NDUFA5 PE=1 SV=3
Length = 116
Score = 69.7 bits (169), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 57/96 (59%)
Query: 14 VKQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEED 73
+K+TTG+ GL V E L LY K L ++ +P + YRK E T ++L + + E D
Sbjct: 5 LKKTTGLVGLAVCNTPHERLRILYTKILDVLEEIPKNAAYRKYTEQITNEKLAMVKAEPD 64
Query: 74 WEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPW 109
+++E +L GQ+EE+I +A+ EL L KM EW W
Sbjct: 65 VKKLEDQLQGGQLEEVILQAEHELNLARKMREWKLW 100
>sp|Q0MQA1|NDUA5_GORGO NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5
OS=Gorilla gorilla gorilla GN=NDUFA5 PE=3 SV=3
Length = 116
Score = 69.7 bits (169), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 57/96 (59%)
Query: 14 VKQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEED 73
+K+TTG+ GL V E L LY K L ++ +P + YRK E T ++L + + E D
Sbjct: 5 LKKTTGLVGLAVCNTPHERLRILYTKILDVLEEIPKNAAYRKYTEQITNEKLAMVKAEPD 64
Query: 74 WEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPW 109
+++E +L GQ+EE+I +A+ EL L KM EW W
Sbjct: 65 VKKLEDQLQGGQLEEVILQAEHELNLARKMREWKLW 100
>sp|P80266|NDUA5_SOLTU NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5
(Fragment) OS=Solanum tuberosum PE=1 SV=1
Length = 37
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/37 (83%), Positives = 34/37 (91%)
Query: 12 AKVKQTTGITGLDVVPNAREVLINLYNKTLKEIQAVP 48
AKVK+TTGI GL VVPNAREVLINLY KTL+EI+AVP
Sbjct: 1 AKVKETTGIVGLXVVPNAREVLINLYRKTLEEIKAVP 37
>sp|P24919|NDUA5_NEUCR NADH-ubiquinone oxidoreductase 29.9 kDa subunit, mitochondrial
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=nuo-32 PE=1 SV=1
Length = 273
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 34/53 (64%)
Query: 18 TGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQE 70
TG+TGL P+ R L+ LYN TL +++ +P YR++ E+ T+ RL + ++
Sbjct: 28 TGLTGLGTHPSPRSALLYLYNHTLDKLKQIPEHSLYRQSAEALTKHRLAIVEQ 80
Score = 33.1 bits (74), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 8/50 (16%)
Query: 76 QIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPWGVPDDYECEVIENDAP 125
++E R+G G +EE+++ A+ EL L+ M + PW E +E +AP
Sbjct: 221 EMEARIGSGLIEEVVQVAEGELKLVDIMTQARPW--------EALEEEAP 262
>sp|O08557|DDAH1_RAT N(G),N(G)-dimethylarginine dimethylaminohydrolase 1 OS=Rattus
norvegicus GN=Ddah1 PE=1 SV=3
Length = 285
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 91 EEAQDELTLIGKMIE--WDPWGVPDDYECEVIENDAPVPKHVPLHRPGPLPEEF 142
E AQ L ++ +M + +D VPDD I + P HV LHR PEE+
Sbjct: 192 ESAQKALKIMQQMSDHRYDKLTVPDDMAANCIYLNIPSKGHVLLHRT---PEEY 242
>sp|P56965|DDAH1_BOVIN N(G),N(G)-dimethylarginine dimethylaminohydrolase 1 OS=Bos taurus
GN=DDAH1 PE=1 SV=3
Length = 285
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 91 EEAQDELTLIGKMIE--WDPWGVPDDYECEVIENDAPVPKHVPLHRPGPLPEEF 142
E AQ L ++ +M + +D VPDD I + P HV LHR PEE+
Sbjct: 192 ESAQKALKIMQQMSDHRYDKLTVPDDTAANCIYLNIPSKGHVLLHRT---PEEY 242
>sp|Q9CWS0|DDAH1_MOUSE N(G),N(G)-dimethylarginine dimethylaminohydrolase 1 OS=Mus musculus
GN=Ddah1 PE=1 SV=3
Length = 285
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 91 EEAQDELTLIGKMIE--WDPWGVPDDYECEVIENDAPVPKHVPLHRPGPLPEEFHKTLEA 148
E AQ L ++ +M + +D VPDD I + P HV LHR PEE+ ++ +
Sbjct: 192 ESAQKALKIMQQMSDHRYDKLTVPDDMAANCIYLNIPSKGHVLLHRT---PEEYPESAKV 248
Query: 149 VTK-KDPTAVTSSESQ 163
K KD + S S+
Sbjct: 249 YEKLKDHLLIPVSNSE 264
>sp|O94760|DDAH1_HUMAN N(G),N(G)-dimethylarginine dimethylaminohydrolase 1 OS=Homo sapiens
GN=DDAH1 PE=1 SV=3
Length = 285
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 91 EEAQDELTLIGKMIE--WDPWGVPDDYECEVIENDAPVPKHVPLHRPGPLPEEF 142
E AQ L ++ +M + +D VPDD I + P HV LHR PEE+
Sbjct: 192 ESAQKALKIMQQMSDHRYDKLTVPDDIAANCIYLNIPNKGHVLLHRT---PEEY 242
>sp|Q50827|CH60_MYCVA 60 kDa chaperonin (Fragment) OS=Mycobacterium vaccae GN=groL PE=3
SV=1
Length = 120
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 52 GYRKAVESFTRQRLKVCQEEEDWEQIEK----RLGCGQVEELIEEAQDEL 97
G KAVE+ T+ LK +E E EQI G Q+ ELI EA D++
Sbjct: 55 GIEKAVEAVTQSLLKSAKEVETKEQISATAAISAGDTQIGELIAEAMDKV 104
>sp|Q1JJW3|DPO3_STRPC DNA polymerase III PolC-type OS=Streptococcus pyogenes serotype M12
(strain MGAS9429) GN=polC PE=3 SV=1
Length = 1465
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 34 INLYNKTLKEIQA-----VPPDEGYRKAVESFTRQRLKVCQEEEDWEQIEKRLGCGQVEE 88
++LY E Q +PP E+ +Q +K QE E ++E R G
Sbjct: 1379 LDLYKSDAIEFQIKGDTLIPPFIALEGLGENVAKQIVKARQEGEFLSKMELRKRGGASST 1438
Query: 89 LIEEAQDELTLIGKMIEWDPWGVPDDY 115
L+E+ DE++++G M E + + DD+
Sbjct: 1439 LVEK-MDEMSILGNMPEDNQLSLFDDF 1464
>sp|Q1J9R4|DPO3_STRPB DNA polymerase III PolC-type OS=Streptococcus pyogenes serotype M12
(strain MGAS2096) GN=polC PE=3 SV=1
Length = 1465
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 34 INLYNKTLKEIQA-----VPPDEGYRKAVESFTRQRLKVCQEEEDWEQIEKRLGCGQVEE 88
++LY E Q +PP E+ +Q +K QE E ++E R G
Sbjct: 1379 LDLYKSDAIEFQIKGDTLIPPFIALEGLGENVAKQIVKARQEGEFLSKMELRKRGGASST 1438
Query: 89 LIEEAQDELTLIGKMIEWDPWGVPDDY 115
L+E+ DE++++G M E + + DD+
Sbjct: 1439 LVEK-MDEMSILGNMPEDNQLSLFDDF 1464
>sp|Q5X9U8|DPO3_STRP6 DNA polymerase III PolC-type OS=Streptococcus pyogenes serotype M6
(strain ATCC BAA-946 / MGAS10394) GN=polC PE=3 SV=1
Length = 1465
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 34 INLYNKTLKEIQA-----VPPDEGYRKAVESFTRQRLKVCQEEEDWEQIEKRLGCGQVEE 88
++LY E Q +PP E+ +Q +K QE E ++E R G
Sbjct: 1379 LDLYKSDAIEFQIKGDTLIPPFIALEGLGENVAKQIVKARQEGEFLSKMELRKRGGASST 1438
Query: 89 LIEEAQDELTLIGKMIEWDPWGVPDDY 115
L+E+ DE++++G M E + + DD+
Sbjct: 1439 LVEK-MDEMSILGNMPEDNQLSLFDDF 1464
>sp|Q680Q4|SIZ1_ARATH E3 SUMO-protein ligase SIZ1 OS=Arabidopsis thaliana GN=SIZ1 PE=1
SV=2
Length = 884
Score = 31.6 bits (70), Expect = 2.4, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 58/141 (41%), Gaps = 18/141 (12%)
Query: 29 AREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEEDWEQIEKRLGCGQVEE 88
A+E + L + T +++Q + K S LKV E ED Q E ++ C
Sbjct: 61 AKEAVAKLVDDTYRKMQVSGASDLASKGQVSSDTSNLKVKGEPEDPFQPEIKVRC----- 115
Query: 89 LIEEAQDELTLIGKMIEWDPWGVPDDYECEVIENDAPV--PKHVPLHRPGPLPEEFHKTL 146
+ G +E D +D C V ++ V P P+ PLPE F+ +
Sbjct: 116 ----------VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDK-PMDGNPPLPESFYCEI 164
Query: 147 EAVTKKDPTAVTSSESQSRLK 167
+T+ DP VT + S ++
Sbjct: 165 CRLTRADPFWVTVAHPLSPVR 185
>sp|Q8BNA6|FAT3_MOUSE Protocadherin Fat 3 OS=Mus musculus GN=Fat3 PE=1 SV=2
Length = 4555
Score = 30.8 bits (68), Expect = 3.9, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 135 PGPLPEEFHKTLEAVTKKDPTAVTSSES 162
P PLPE+F EA+ PT++TS+ S
Sbjct: 4418 PPPLPEDFPDQYEALPPSQPTSLTSTMS 4445
>sp|A4T2X3|CH601_MYCGI 60 kDa chaperonin 1 OS=Mycobacterium gilvum (strain PYR-GCK)
GN=groL1 PE=3 SV=1
Length = 541
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 52 GYRKAVESFTRQRLKVCQEEEDWEQIEK----RLGCGQVEELIEEAQDEL 97
G KAVE+ T+ LK +E E EQI G Q+ ELI EA D++
Sbjct: 118 GIEKAVEAVTQGLLKSAKEVETKEQIAATAAISAGDVQIGELIAEAMDKV 167
>sp|Q8ZES9|LCFA_YERPE Long-chain-fatty-acid--CoA ligase OS=Yersinia pestis GN=fadD PE=3
SV=1
Length = 562
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 2 FLRVIGRPLMAKVKQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFT 61
FLR++ R K ++G +V PN E ++ L+ K L+ P+E +AV+ F
Sbjct: 447 FLRIVDRK-----KDMILVSGFNVYPNEIEEVVALHAKVLESAVIGVPNEVSGEAVKVFV 501
Query: 62 RQRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDEL--TLIGKMI 104
+ EE + L +V +++ E +DEL + +GK++
Sbjct: 502 VKNDASLTPEELLTHCRRYLTGYKVPKIV-EFRDELPKSNVGKIL 545
>sp|P97086|CH60_TSUTY 60 kDa chaperonin OS=Tsukamurella tyrosinosolvens GN=groL PE=3 SV=1
Length = 539
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 52 GYRKAVESFTRQRLKVCQEEEDWEQIEKRLGCG----QVEELIEEAQDEL 97
G KAVE+ T LK +E E +QI G + ELI EA D++
Sbjct: 118 GIEKAVEAVTEHLLKAAKEVETKDQIAATAGISAGDPAIGELIAEAMDKV 167
>sp|A1T352|CH601_MYCVP 60 kDa chaperonin 1 OS=Mycobacterium vanbaalenii (strain DSM 7251 /
PYR-1) GN=groL1 PE=3 SV=1
Length = 541
Score = 30.4 bits (67), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 52 GYRKAVESFTRQRLKVCQEEEDWEQIEK----RLGCGQVEELIEEAQDEL 97
G KAVE T LK +E E EQI G Q+ ELI EA D++
Sbjct: 118 GIEKAVEKVTETLLKSAKEVETKEQIAATAAISAGDTQIGELIAEAMDKV 167
>sp|Q58310|Y900_METJA Uncharacterized protein MJ0900 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0900 PE=3 SV=1
Length = 551
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 31 EVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEED-WEQIEKR--LGCGQVE 87
EVL L+N K +AV +EG+ + + F ++K+ EE D + I KR +G G +E
Sbjct: 116 EVLTRLFNACTKVTEAVG-EEGFFQRIFRFADNKIKITPEERDKFLYILKRDLIGLGNLE 174
>sp|Q96WJ0|ERG7_PNECA Lanosterol synthase OS=Pneumocystis carinii GN=ERG7 PE=2 SV=1
Length = 719
Score = 30.0 bits (66), Expect = 6.5, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 36 LYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEED 73
+Y T KE++ PD G+R VE RQR K + EE+
Sbjct: 2 IYGYTEKELEKTDPD-GWRLIVEDTGRQRWKYLKTEEE 38
>sp|Q494R4|CC153_HUMAN Coiled-coil domain-containing protein 153 OS=Homo sapiens
GN=CCDC153 PE=2 SV=2
Length = 210
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 22 GLDVVPNAREVLINLYNKTLKEIQAVPPDEGYR-KAVESFTRQRLKVCQEEEDWEQIEKR 80
G DVV +R L+ L + L++ A+ DE R KA E RQRL+ + E + + E +
Sbjct: 22 GADVVAESRHRLVVLEKELLRDHLALRRDEARRAKASEDQLRQRLQGVEAELEGARSEGK 81
Query: 81 LGCGQVEELIEEAQDELTLIGKMIEWDPWGVPDDYEC 117
++ Q+++ K +E + G+ E
Sbjct: 82 AIYAEMSRQCHALQEDMQTRSKQLEEEVKGLRGQLEA 118
>sp|O74460|YCGG_SCHPO Uncharacterized protein C16C4.16c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC16C4.16c PE=4 SV=2
Length = 206
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 104 IEWDPWGVPDDYECEVIENDAPVPKHVPLHRPGPLPEEFHKTLEAVTKKDPTAVT 158
IEW +D EC V+ D V ++ H P EF + LE TK PT T
Sbjct: 66 IEW-----INDNECNVVYADDDVSRNALFHLIMESPTEFSEELEYQTKPHPTVPT 115
>sp|Q3UHJ0|AAK1_MOUSE AP2-associated protein kinase 1 OS=Mus musculus GN=Aak1 PE=1 SV=2
Length = 959
Score = 30.0 bits (66), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 93 AQDELTLIGKMIEWDPWGVPDDYEC-----EVIENDAPVPKHVPLHRPGPLPEEFHKTLE 147
+QD LI M+E DP PD Y+ ++++ + PVP P LPE +
Sbjct: 283 SQDMHCLIRYMLEPDPDKRPDIYQVSYFSFKLLKKECPVPNVQNSPIPAKLPEPVKASEA 342
Query: 148 AVTKKDPTA 156
AV K P A
Sbjct: 343 AVKKTQPKA 351
>sp|Q9AFA6|CH602_NOCFA 60 kDa chaperonin 2 OS=Nocardia farcinica (strain IFM 10152)
GN=groL2 PE=3 SV=2
Length = 541
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 52 GYRKAVESFTRQRLKVCQEEEDWEQIEKRLGC----GQVEELIEEAQDEL 97
G KAVE+ T + L +E E EQI G + ELI EA D++
Sbjct: 118 GIEKAVEAVTAKLLDTAKEVETKEQIAATAGISAGDASIGELIAEAMDKV 167
>sp|Q48883|CH60_MYCAG 60 kDa chaperonin (Fragment) OS=Mycobacterium agri GN=groL PE=3
SV=1
Length = 120
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 52 GYRKAVESFTRQRLKVCQEEEDWEQIEKRLGCG----QVEELIEEAQDEL 97
G KAVE T LK +E E EQI G + ELI EA D++
Sbjct: 55 GIEKAVEKVTETLLKSAKEVETKEQIAATAGISAGDPSIGELIAEAMDKV 104
>sp|Q9AFA5|CH60_TSUPA 60 kDa chaperonin OS=Tsukamurella paurometabola GN=groL PE=3 SV=1
Length = 540
Score = 29.6 bits (65), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 52 GYRKAVESFTRQRLKVCQEEEDWEQIEKRLGCG----QVEELIEEAQDEL 97
G KAVE+ T LK +E E EQI G + ELI EA D++
Sbjct: 118 GIEKAVEAVTEHLLKEAKEVETKEQIAATAGISAGDPAIGELIAEAMDKV 167
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,130,801
Number of Sequences: 539616
Number of extensions: 2894305
Number of successful extensions: 7480
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 7449
Number of HSP's gapped (non-prelim): 97
length of query: 168
length of database: 191,569,459
effective HSP length: 109
effective length of query: 59
effective length of database: 132,751,315
effective search space: 7832327585
effective search space used: 7832327585
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)