Query 030948
Match_columns 168
No_of_seqs 114 out of 188
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 06:58:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030948.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030948hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3365 NADH:ubiquinone oxidor 100.0 1.8E-39 4E-44 257.5 10.3 123 2-124 22-144 (145)
2 PF04716 ETC_C1_NDUFA5: ETC co 99.9 5.8E-25 1.3E-29 151.2 7.0 57 27-83 1-57 (57)
3 PF02260 FATC: FATC domain; I 92.6 0.11 2.3E-06 32.2 2.3 27 83-109 6-32 (33)
4 PF05347 Complex1_LYR: Complex 89.7 1.2 2.5E-05 29.1 5.1 49 33-82 3-51 (59)
5 PF13232 Complex1_LYR_1: Compl 84.5 5.9 0.00013 26.3 6.4 58 33-100 3-60 (61)
6 KOG3801 Uncharacterized conser 70.9 38 0.00082 26.0 7.8 62 30-101 6-67 (94)
7 COG5032 TEL1 Phosphatidylinosi 56.3 13 0.00027 41.0 3.9 103 4-109 1987-2104(2105)
8 PRK00082 hrcA heat-inducible t 52.9 13 0.00029 33.1 3.0 54 46-102 66-121 (339)
9 PF05659 RPW8: Arabidopsis bro 39.1 1.1E+02 0.0025 24.3 6.0 80 32-111 10-93 (147)
10 PF10146 zf-C4H2: Zinc finger- 39.1 51 0.0011 28.4 4.3 62 36-97 16-90 (230)
11 cd05497 Bromo_Brdt_I_like Brom 37.9 27 0.00058 26.2 2.2 55 31-85 4-61 (107)
12 PF05615 THOC7: Tho complex su 37.8 1.8E+02 0.004 22.2 7.3 82 25-108 13-115 (139)
13 KOG0890 Protein kinase of the 34.5 41 0.00089 37.9 3.6 36 74-109 2334-2381(2382)
14 PF15205 PLAC9: Placenta-speci 34.5 26 0.00056 25.7 1.5 21 61-81 23-45 (74)
15 KOG1684 Enoyl-CoA hydratase [L 34.0 1.1E+02 0.0023 28.9 5.8 66 21-91 213-283 (401)
16 PF15112 DUF4559: Domain of un 33.3 83 0.0018 28.6 4.8 75 23-97 158-249 (307)
17 KOG2067 Mitochondrial processi 30.9 53 0.0012 31.4 3.3 96 16-158 332-428 (472)
18 cd05506 Bromo_plant1 Bromodoma 30.8 49 0.0011 23.7 2.5 54 33-86 1-57 (99)
19 PHA01750 hypothetical protein 29.8 1.6E+02 0.0035 21.6 5.0 35 32-75 20-55 (75)
20 cd05492 Bromo_ZMYND11 Bromodom 27.7 69 0.0015 24.4 2.9 56 36-91 4-69 (109)
21 COG1420 HrcA Transcriptional r 27.6 89 0.0019 28.5 4.1 49 46-98 66-117 (346)
22 cd05513 Bromo_brd7_like Bromod 27.4 56 0.0012 24.2 2.4 55 33-87 2-57 (98)
23 PF14257 DUF4349: Domain of un 26.3 2.3E+02 0.0049 23.8 6.1 69 71-149 161-229 (262)
24 cd05495 Bromo_cbp_like Bromodo 25.6 72 0.0016 23.8 2.7 69 31-100 2-74 (108)
25 TIGR00331 hrcA heat shock gene 25.1 77 0.0017 28.3 3.2 56 46-104 62-119 (337)
26 KOG0892 Protein kinase ATM/Tel 24.8 35 0.00076 38.9 1.2 99 4-109 2669-2805(2806)
27 PF14966 DNA_repr_REX1B: DNA r 24.5 2.4E+02 0.0053 21.0 5.3 55 35-92 17-78 (97)
28 PF02064 MAS20: MAS20 protein 24.3 47 0.001 26.0 1.5 19 22-41 89-107 (121)
29 cd05511 Bromo_TFIID Bromodomai 24.3 1.4E+02 0.003 22.4 4.0 54 33-86 1-55 (112)
30 PF10498 IFT57: Intra-flagella 23.9 2.9E+02 0.0063 25.2 6.7 65 36-101 199-286 (359)
31 PRK01194 V-type ATP synthase s 23.7 2.5E+02 0.0053 22.9 5.7 35 31-65 80-114 (185)
32 cd00179 SynN Syntaxin N-termin 22.6 1.9E+02 0.0041 21.7 4.6 59 27-87 87-145 (151)
33 cd05503 Bromo_BAZ2A_B_like Bro 22.5 80 0.0017 22.9 2.4 52 35-86 3-55 (97)
34 PF05008 V-SNARE: Vesicle tran 21.2 2.5E+02 0.0055 19.1 4.6 26 73-100 26-51 (79)
35 PF07904 Eaf7: Chromatin modif 20.5 61 0.0013 23.9 1.4 23 94-116 1-23 (91)
36 cd05510 Bromo_SPT7_like Bromod 20.5 2E+02 0.0044 21.7 4.3 69 31-100 6-76 (112)
37 smart00297 BROMO bromo domain. 20.2 1.3E+02 0.0029 21.2 3.1 59 28-86 3-62 (107)
38 PRK12585 putative monovalent c 20.1 2.9E+02 0.0063 23.8 5.5 84 35-125 102-186 (197)
No 1
>KOG3365 consensus NADH:ubiquinone oxidoreductase, NDUFA5/B13 subunit [Energy production and conversion]
Probab=100.00 E-value=1.8e-39 Score=257.53 Aligned_cols=123 Identities=37% Similarity=0.524 Sum_probs=117.3
Q ss_pred hHHhhhhhhhhhhcccccccccccCCChHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhhhcccccHHHHHHHH
Q 030948 2 FLRVIGRPLMAKVKQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEEDWEQIEKRL 81 (168)
Q Consensus 2 ~~~r~~~~l~~~~KktTGltGL~V~pnPr~~L~~lY~~tL~~L~~iPe~s~YRq~tE~itk~RL~IVe~~~di~~iE~~i 81 (168)
|.+-+.++|.+.+|+|||+|||+|++|||.+|..+|++||+++++||++++||++||+||+.||++|+.++|++.||+++
T Consensus 22 ~r~~~~~~l~g~~k~ttg~Vgl~v~~~~~~rl~~ly~kil~~~eqIpkn~ayRk~Tesit~~kLa~~k~E~d~K~ledql 101 (145)
T KOG3365|consen 22 RRFCIVQSLRGVLKKTTGIVGLAVCENPHERLRDLYTKILDVLEQIPKNAAYRKYTESITNQKLAMLKAEPDVKKLEDQL 101 (145)
T ss_pred HHHHhhcchhchhhhhhhhhhhhccCCHHHHHHHHHHHhHHHHHHcchhhhhhHHHHHHHHHHHHHHHcchHHHHHHHHh
Confidence 44445588899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccceeecCCC
Q 030948 82 GCGQVEELIEEAQDELTLIGKMIEWDPWGVPDDYECEVIENDA 124 (168)
Q Consensus 82 g~GQIEElI~qAe~EL~L~~kM~ewKpWE~p~d~e~~v~~~~~ 124 (168)
|||||||+|.||++||.++++|.+||||+.++++.+++...+.
T Consensus 102 ~gGqIEE~i~qa~~el~m~~k~~~wk~w~~~~e~~~~~~~~~~ 144 (145)
T KOG3365|consen 102 QGGQIEEVIEQAEAELNMGRKMFEWKPWEEHVEEPPALQWCWP 144 (145)
T ss_pred cCCchHHHHHHHHHHHHHHhhhhcccccCccccccccccccCC
Confidence 9999999999999999999999999999999999999887764
No 2
>PF04716 ETC_C1_NDUFA5: ETC complex I subunit conserved region; InterPro: IPR006806 This is a family of eukaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC) (1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 29.9 kDa protein. The conserved region is found at the N terminus of the member proteins [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022904 respiratory electron transport chain, 0005743 mitochondrial inner membrane
Probab=99.91 E-value=5.8e-25 Score=151.24 Aligned_cols=57 Identities=56% Similarity=0.997 Sum_probs=56.5
Q ss_pred CChHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhhhcccccHHHHHHHHCC
Q 030948 27 PNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEEDWEQIEKRLGC 83 (168)
Q Consensus 27 pnPr~~L~~lY~~tL~~L~~iPe~s~YRq~tE~itk~RL~IVe~~~di~~iE~~ig~ 83 (168)
||||++|+.+|++||++|++||++|+|||+||++|++||+||++++|+++||++|||
T Consensus 1 pnpr~~L~~lY~~~L~~L~~~P~~a~YR~~tE~it~~Rl~iv~~~~d~~~iE~~i~c 57 (57)
T PF04716_consen 1 PNPREALISLYNKTLKALKKIPEDAAYRQYTEAITKHRLKIVEEEEDIEKIEKKIGC 57 (57)
T ss_pred CChHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHccccHHHHHHHhCc
Confidence 899999999999999999999999999999999999999999999999999999998
No 3
>PF02260 FATC: FATC domain; InterPro: IPR003152 The FATC domain is found at the C-terminal end of the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding; PDB: 2KIT_A 1W1N_A 2KIO_A.
Probab=92.64 E-value=0.11 Score=32.25 Aligned_cols=27 Identities=48% Similarity=0.757 Sum_probs=24.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhcCCC
Q 030948 83 CGQVEELIEEAQDELTLIGKMIEWDPW 109 (168)
Q Consensus 83 ~GQIEElI~qAe~EL~L~~kM~ewKpW 109 (168)
.+||.+||.+|-|--.|++...-|-||
T Consensus 6 ~~qV~~LI~~At~~~nLa~my~GW~pw 32 (33)
T PF02260_consen 6 EQQVDELISEATDPENLARMYIGWMPW 32 (33)
T ss_dssp THHHHHHHHHHHHHHHHHHHCTSS-TT
T ss_pred HHHHHHHHHHHcCHHHHHHHhcchhcc
Confidence 489999999999999999999999998
No 4
>PF05347 Complex1_LYR: Complex 1 protein (LYR family); InterPro: IPR008011 This family of short proteins includes proteins from the NADH-ubiquinone oxidoreductase complex I. The family includes the B14 subunit from bovine NADH-ubiquinone oxidoreductase B14 subunit Q02366 from SWISSPROT, and the B22 subunit from the human enzyme Q9Y6M9 from SWISSPROT. The family has been named LYR after a highly conserved tripeptide motif close to the N terminus of these proteins. Members of this family also found in yeast which do contain this complex. In these organisms they are believed to be be required for iron-sulphur custer biogenesis.
Probab=89.66 E-value=1.2 Score=29.14 Aligned_cols=49 Identities=29% Similarity=0.467 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhhhcccccHHHHHHHHC
Q 030948 33 LINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEEDWEQIEKRLG 82 (168)
Q Consensus 33 L~~lY~~tL~~L~~iPe~s~YRq~tE~itk~RL~IVe~~~di~~iE~~ig 82 (168)
-+.||..+|.....+|..+ +|.+.-..++....-=....|..+|+..+.
T Consensus 3 vl~LYR~lLR~~~~~~~~~-~r~~~~~~iR~~Fr~n~~~~d~~~I~~~l~ 51 (59)
T PF05347_consen 3 VLSLYRQLLRAARSFPDDS-EREYIRAEIRQEFRKNRNETDPEKIEELLK 51 (59)
T ss_pred HHHHHHHHHHHHHHcCCcc-hHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 4689999999999999988 777777777776665566778777765544
No 5
>PF13232 Complex1_LYR_1: Complex1_LYR-like
Probab=84.55 E-value=5.9 Score=26.34 Aligned_cols=58 Identities=26% Similarity=0.490 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhhhcccccHHHHHHHHCCchHHHHHHHHHHHHHHH
Q 030948 33 LINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELTLI 100 (168)
Q Consensus 33 L~~lY~~tL~~L~~iPe~s~YRq~tE~itk~RL~IVe~~~di~~iE~~ig~GQIEElI~qAe~EL~L~ 100 (168)
...||..+|..-..+|. ..||.++-..++.+..--....|.+ .|+.+|..|+++|.++
T Consensus 3 vL~LYR~lLR~~~~~~~-~~~r~~~~~~ir~~Fr~~~~~td~~---------~i~~~l~~~~~~L~~l 60 (61)
T PF13232_consen 3 VLSLYRQLLREASKFPD-YNFRSYFRRRIRDRFRRNKNVTDPE---------KIAKLLKEGRKELELL 60 (61)
T ss_pred HHHHHHHHHHHhhhcCC-cchHHHHHHHHHHHHHHcCCCCCHH---------HHHHHHHHHHHHHHHc
Confidence 46899999999999874 5677888888888877666666664 4556666788887764
No 6
>KOG3801 consensus Uncharacterized conserved protein BCN92 [RNA processing and modification]
Probab=70.91 E-value=38 Score=25.98 Aligned_cols=62 Identities=27% Similarity=0.431 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhhhcccccHHHHHHHHCCchHHHHHHHHHHHHHHHH
Q 030948 30 REVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELTLIG 101 (168)
Q Consensus 30 r~~L~~lY~~tL~~L~~iPe~s~YRq~tE~itk~RL~IVe~~~di~~iE~~ig~GQIEElI~qAe~EL~L~~ 101 (168)
+.....||..+|..-++|| ++.||-|.-.-|+.-...-....|..++++.+. .|+..|.+++
T Consensus 6 r~qvlsLyr~~lr~s~qfp-~YNyReY~~RrtRD~Fr~Nkn~~Dp~e~~~l~~---------eakk~Levik 67 (94)
T KOG3801|consen 6 RRQVLSLYRNLLRESKQFP-QYNYREYFQRRTRDTFRANKNVCDPAEIKKLYK---------EAKKQLEVIK 67 (94)
T ss_pred HHHHHHHHHHHHHHHhhCC-cccHHHHHHHHHHHHHHHhcccCCHHHHHHHHH---------HHHHHHHHHH
Confidence 4456789999999999997 588999998888766666666778887766554 5555555554
No 7
>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=56.31 E-value=13 Score=40.98 Aligned_cols=103 Identities=22% Similarity=0.300 Sum_probs=69.4
Q ss_pred Hhhhhhhhhhhccccccccc--ccCCChHHHHHHHHHHHHHHHhcCCCC-----------chHHHHHHHHHHHH--Hhhh
Q 030948 4 RVIGRPLMAKVKQTTGITGL--DVVPNAREVLINLYNKTLKEIQAVPPD-----------EGYRKAVESFTRQR--LKVC 68 (168)
Q Consensus 4 ~r~~~~l~~~~KktTGltGL--~V~pnPr~~L~~lY~~tL~~L~~iPe~-----------s~YRq~tE~itk~R--L~IV 68 (168)
+|+|+.+..+.. -||..|. ..|-..-.+|+.=.+.++..|+.|.-+ ..+.+.+-.-++.| +++.
T Consensus 1987 FrLT~~iv~~mg-~~g~EG~Fr~~c~~~~~~LRk~~~~L~~~le~f~~d~l~~W~~~p~~~~~~~~~~~~v~~rf~~kl~ 2065 (2105)
T COG5032 1987 FRLTRNIVEAMG-VSGVEGSFRELCETAFRALRKNADSLMNVLELFVRDPLIEWRRLPCFREIQNNEIVNVLERFRLKLS 2065 (2105)
T ss_pred HhhhHHHHHhcC-ccchhhHHHHHHHHHHHHHhccHHHHHHHHHHHhcCcchhhhcCccccchHHHHHHHHHHHHHHHhh
Confidence 566666666553 3555554 134455566666667777777655444 32324444444444 3443
Q ss_pred cccccHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHhcCCC
Q 030948 69 QEEEDWEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPW 109 (168)
Q Consensus 69 e~~~di~~iE~~ig~GQIEElI~qAe~EL~L~~kM~ewKpW 109 (168)
+.|....+....+++++.+|.||-|.-.|+...+-|-||
T Consensus 2066 --~~~~~~~~~l~I~~sv~~li~~a~d~~~L~~~yi~w~~f 2104 (2105)
T COG5032 2066 --EKDAEKFVDLLINKSVESLITQATDPFQLATMYIGWMPF 2104 (2105)
T ss_pred --hhhhhhhcCCcHHHHHHHHHHHHcCHHHHHhhccccccC
Confidence 556677788888899999999999999999999999999
No 8
>PRK00082 hrcA heat-inducible transcription repressor; Provisional
Probab=52.90 E-value=13 Score=33.08 Aligned_cols=54 Identities=30% Similarity=0.456 Sum_probs=39.3
Q ss_pred cCCCCchHHHHHHHHHHHHHhhhcccccHHHHHHHHC--CchHHHHHHHHHHHHHHHHH
Q 030948 46 AVPPDEGYRKAVESFTRQRLKVCQEEEDWEQIEKRLG--CGQVEELIEEAQDELTLIGK 102 (168)
Q Consensus 46 ~iPe~s~YRq~tE~itk~RL~IVe~~~di~~iE~~ig--~GQIEElI~qAe~EL~L~~k 102 (168)
.+|.+.+||-|+..+.+.+ . -.+++...|++.+. .+.++++|++|-+-|+=.-.
T Consensus 66 rIPT~kGYR~YVd~L~~~~-~--~~~~~~~~i~~~~~~~~~~~~~~l~~aa~~Ls~lT~ 121 (339)
T PRK00082 66 RIPTDKGYRYFVDHLLEVK-P--LSEEERRAIEKFLDERGVSLEDVLQEAAQLLSELTG 121 (339)
T ss_pred CCcCHHHHHHHHHHhCCCC-C--CCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHC
Confidence 4999999999999886521 1 13445567777765 36899999999877764443
No 9
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=39.12 E-value=1.1e+02 Score=24.33 Aligned_cols=80 Identities=14% Similarity=0.233 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHh-cCCCCchHHHHHHHHHHHHHhhhcccccHHHHHHHHCCc---hHHHHHHHHHHHHHHHHHHHhcC
Q 030948 32 VLINLYNKTLKEIQ-AVPPDEGYRKAVESFTRQRLKVCQEEEDWEQIEKRLGCG---QVEELIEEAQDELTLIGKMIEWD 107 (168)
Q Consensus 32 ~L~~lY~~tL~~L~-~iPe~s~YRq~tE~itk~RL~IVe~~~di~~iE~~ig~G---QIEElI~qAe~EL~L~~kM~ewK 107 (168)
+|....+.+|+.+. ..-....||...+.+..---.|.-....|+.+-+.++.. ++|.++..-++=-+|+.+..+-+
T Consensus 10 alG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~sk~~ 89 (147)
T PF05659_consen 10 ALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKCSKVR 89 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHhcccc
Confidence 45566666776665 355566788887777766666666666677777777755 69999999999999999999988
Q ss_pred CCCC
Q 030948 108 PWGV 111 (168)
Q Consensus 108 pWE~ 111 (168)
-|.+
T Consensus 90 r~n~ 93 (147)
T PF05659_consen 90 RWNL 93 (147)
T ss_pred HHHH
Confidence 8875
No 10
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=39.10 E-value=51 Score=28.36 Aligned_cols=62 Identities=26% Similarity=0.463 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCCCC----chHHHHHHHHHHHHHhhhcc----cccHHHHHHHHC-----CchHHHHHHHHHHHH
Q 030948 36 LYNKTLKEIQAVPPD----EGYRKAVESFTRQRLKVCQE----EEDWEQIEKRLG-----CGQVEELIEEAQDEL 97 (168)
Q Consensus 36 lY~~tL~~L~~iPe~----s~YRq~tE~itk~RL~IVe~----~~di~~iE~~ig-----~GQIEElI~qAe~EL 97 (168)
+-++++..+..+=.. ..|++-.+.|..+|+..+++ +.||..+|+.|. .....+-|.+..+|+
T Consensus 16 ~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey 90 (230)
T PF10146_consen 16 LKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEY 90 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444433332 46999999999999999876 678888877662 233455555554444
No 11
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=37.91 E-value=27 Score=26.15 Aligned_cols=55 Identities=20% Similarity=0.176 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHHH---HHHHHhhhcccccHHHHHHHHCCch
Q 030948 31 EVLINLYNKTLKEIQAVPPDEGYRKAVESF---TRQRLKVCQEEEDWEQIEKRLGCGQ 85 (168)
Q Consensus 31 ~~L~~lY~~tL~~L~~iPe~s~YRq~tE~i---tk~RL~IVe~~~di~~iE~~ig~GQ 85 (168)
..|..+.+.+|+.|.+-|-+..++.-|... ...=.+||+..-|...|+++|..|+
T Consensus 4 ~q~~~~~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~ 61 (107)
T cd05497 4 NQLQYLLKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNY 61 (107)
T ss_pred HHHHHHHHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCC
Confidence 357788899999999999999999887643 3333589999999999999999987
No 12
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=37.80 E-value=1.8e+02 Score=22.17 Aligned_cols=82 Identities=16% Similarity=0.175 Sum_probs=50.5
Q ss_pred cCCChHHHHHHHHHHHHHHHhcCCC-------CchHHHHHHHHHHHHHhhhcc--------------cccHHHHHHHHCC
Q 030948 25 VVPNAREVLINLYNKTLKEIQAVPP-------DEGYRKAVESFTRQRLKVCQE--------------EEDWEQIEKRLGC 83 (168)
Q Consensus 25 V~pnPr~~L~~lY~~tL~~L~~iPe-------~s~YRq~tE~itk~RL~IVe~--------------~~di~~iE~~ig~ 83 (168)
+...|...|...|.+..+.....+. ...|-.....+....+++.+. ...-..||..|.
T Consensus 13 ~~dr~l~~l~k~~~~~~~~~~~~~~~~~~e~~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~- 91 (139)
T PF05615_consen 13 GDDRPLKRLLKRFLKWCNLSDSILSGQPSEESQFLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIE- 91 (139)
T ss_pred cCchhHHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 6677777777777777666654422 223444444444444444433 123335555554
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCC
Q 030948 84 GQVEELIEEAQDELTLIGKMIEWDP 108 (168)
Q Consensus 84 GQIEElI~qAe~EL~L~~kM~ewKp 108 (168)
++..=|..++.+|.-++.+...|-
T Consensus 92 -~~k~~ie~lk~~L~~ak~~r~~k~ 115 (139)
T PF05615_consen 92 -QAKKEIEELKEELEEAKRVRQNKE 115 (139)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677778899999999998887764
No 13
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=34.47 E-value=41 Score=37.89 Aligned_cols=36 Identities=42% Similarity=0.579 Sum_probs=31.0
Q ss_pred HHHHHHHHCC------------chHHHHHHHHHHHHHHHHHHHhcCCC
Q 030948 74 WEQIEKRLGC------------GQVEELIEEAQDELTLIGKMIEWDPW 109 (168)
Q Consensus 74 i~~iE~~ig~------------GQIEElI~qAe~EL~L~~kM~ewKpW 109 (168)
+.-||++|.+ ||+..+|+.|-+|=.|...++-|=||
T Consensus 2334 i~~i~~rlqG~~~~~glPLSveGq~~~LI~eATseenL~~MYIGW~p~ 2381 (2382)
T KOG0890|consen 2334 IGRIRGRLQGAMKVDGLPLSVEGQASSLIEEATSEENLSEMYIGWMPF 2381 (2382)
T ss_pred HhHHHHHHhccCcCCCCccchhhHHHHHHHHhcCHHHHHHHHhhhhcc
Confidence 4456666654 99999999999999999999999987
No 14
>PF15205 PLAC9: Placenta-specific protein 9
Probab=34.46 E-value=26 Score=25.73 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=12.0
Q ss_pred HHHHHhhhcc--cccHHHHHHHH
Q 030948 61 TRQRLKVCQE--EEDWEQIEKRL 81 (168)
Q Consensus 61 tk~RL~IVe~--~~di~~iE~~i 81 (168)
+..||+|+++ +.-++-||.++
T Consensus 23 v~~RLdviEe~veKTVEhLeaEv 45 (74)
T PF15205_consen 23 VHSRLDVIEETVEKTVEHLEAEV 45 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888764 34444444443
No 15
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=33.97 E-value=1.1e+02 Score=28.88 Aligned_cols=66 Identities=23% Similarity=0.284 Sum_probs=45.8
Q ss_pred cccccCCChHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhhhcc-----cccHHHHHHHHCCchHHHHHH
Q 030948 21 TGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQE-----EEDWEQIEKRLGCGQVEELIE 91 (168)
Q Consensus 21 tGL~V~pnPr~~L~~lY~~tL~~L~~iPe~s~YRq~tE~itk~RL~IVe~-----~~di~~iE~~ig~GQIEElI~ 91 (168)
+||+.|-=|-+.|-.|=.+++..|..-|++. +++....=-..... ..-++.|++-+...-|||+|+
T Consensus 213 ~GlATHyv~S~~l~~Lee~L~~~l~~dp~~~-----I~~~l~~y~~~~~~~~~~~~~~~~~i~~~Fs~~tVeeIie 283 (401)
T KOG1684|consen 213 CGLATHYVPSEKLPSLEERLLKNLNDDPQSV-----INETLEKYASPAKDESFSLSLKLDVINKCFSANTVEEIIE 283 (401)
T ss_pred hcchhhccchhhhhHHHHHHhhhcCCCcHHH-----HHHHHHHhcccCCCccccchhhHHHHHHhhccccHHHHHH
Confidence 5899999999999999999997777777544 23222222222111 235667788887788999998
No 16
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=33.32 E-value=83 Score=28.62 Aligned_cols=75 Identities=17% Similarity=0.149 Sum_probs=52.1
Q ss_pred cccCCChHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhhhccc-----------------ccHHHHHHHHCCch
Q 030948 23 LDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEE-----------------EDWEQIEKRLGCGQ 85 (168)
Q Consensus 23 L~V~pnPr~~L~~lY~~tL~~L~~iPe~s~YRq~tE~itk~RL~IVe~~-----------------~di~~iE~~ig~GQ 85 (168)
+.|...+.........+.|+.+..+|+-..-.+.+|++-+.=.+|.... ..+-.+|.++-..+
T Consensus 158 mkvs~~wm~~~~~~i~nll~~f~~ipe~~~a~~~Ie~ll~~d~~v~~~~~d~~Dg~~~~~~~~~~~~~i~e~e~e~Lke~ 237 (307)
T PF15112_consen 158 MKVSSQWMRDFQMKIQNLLNEFRNIPEIVAAGSRIEQLLTSDWAVHIPEEDQRDGCESETDVYLSESQILEIEMELLKEK 237 (307)
T ss_pred cccCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHhhhhhhcCchhhccchhhhccchhhhHHHHHHHHHHHHHHH
Confidence 4455556666666667777777789999999999999988777766442 23345666666666
Q ss_pred HHHHHHHHHHHH
Q 030948 86 VEELIEEAQDEL 97 (168)
Q Consensus 86 IEElI~qAe~EL 97 (168)
+.|++.||++..
T Consensus 238 lqel~~~~e~~~ 249 (307)
T PF15112_consen 238 LQELYLQAEEQE 249 (307)
T ss_pred HHHHHHHHhhcc
Confidence 777777776643
No 17
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=30.87 E-value=53 Score=31.37 Aligned_cols=96 Identities=24% Similarity=0.287 Sum_probs=66.0
Q ss_pred ccccccccccCCChHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhhhcccccHHHHHHHHCCchHHHHHHHHHH
Q 030948 16 QTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQD 95 (168)
Q Consensus 16 ktTGltGL~V~pnPr~~L~~lY~~tL~~L~~iPe~s~YRq~tE~itk~RL~IVe~~~di~~iE~~ig~GQIEElI~qAe~ 95 (168)
.-|||-|+..+-.|+.+ .+.+|=++++-+++... -+- +=+.-|++
T Consensus 332 ~DtGlfgi~~s~~P~~a---------------------~~aveli~~e~~~~~~~-v~~-------------~el~RAK~ 376 (472)
T KOG2067|consen 332 SDTGLFGIYASAPPQAA---------------------NDAVELIAKEMINMAGG-VTQ-------------EELERAKT 376 (472)
T ss_pred cCCceeEEeccCCHHHH---------------------HHHHHHHHHHHHHHhCC-CCH-------------HHHHHHHH
Confidence 34999999999988764 56778888887777654 111 22456888
Q ss_pred HHHHHHHHH-hcCCCCCCCCccceeecCCCCCCCCcCCCCCCCCchHHHHHHHHhhcCCCCccc
Q 030948 96 ELTLIGKMI-EWDPWGVPDDYECEVIENDAPVPKHVPLHRPGPLPEEFHKTLEAVTKKDPTAVT 158 (168)
Q Consensus 96 EL~L~~kM~-ewKpWE~p~d~e~~v~~~~~~ipkh~~~~~p~~~~~~F~~~~~a~~~~~~~~~~ 158 (168)
.|+=.-.|. |.||=.. . .+.+-+..|.-.-.|.+|++..+.||.+|+.-++
T Consensus 377 qlkS~LlMNLESR~V~~--------E----DvGRQVL~~g~rk~p~e~~~~Ie~lt~~DI~rva 428 (472)
T KOG2067|consen 377 QLKSMLLMNLESRPVAF--------E----DVGRQVLTTGERKPPDEFIKKIEQLTPSDISRVA 428 (472)
T ss_pred HHHHHHHhcccccchhH--------H----HHhHHHHhccCcCCHHHHHHHHHhcCHHHHHHHH
Confidence 887776663 5555332 2 2455566666677899999999999997654443
No 18
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=30.78 E-value=49 Score=23.75 Aligned_cols=54 Identities=11% Similarity=0.184 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHH---HHHHHhhhcccccHHHHHHHHCCchH
Q 030948 33 LINLYNKTLKEIQAVPPDEGYRKAVESF---TRQRLKVCQEEEDWEQIEKRLGCGQV 86 (168)
Q Consensus 33 L~~lY~~tL~~L~~iPe~s~YRq~tE~i---tk~RL~IVe~~~di~~iE~~ig~GQI 86 (168)
|+..+.++|+.|.+-|.+..++.-+..- ...=..+|...-|+..|+++|..|+-
T Consensus 1 ~~~~c~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y 57 (99)
T cd05506 1 VMKQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEY 57 (99)
T ss_pred CHHHHHHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCC
Confidence 3567788999998888888887765311 11124778888899999999999983
No 19
>PHA01750 hypothetical protein
Probab=29.80 E-value=1.6e+02 Score=21.57 Aligned_cols=35 Identities=26% Similarity=0.403 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH-hhhcccccHH
Q 030948 32 VLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRL-KVCQEEEDWE 75 (168)
Q Consensus 32 ~L~~lY~~tL~~L~~iPe~s~YRq~tE~itk~RL-~IVe~~~di~ 75 (168)
+++.+|-++=.. +|.+++.|++.-| +++.+-+++.
T Consensus 20 aIiqlYlKIKq~---------lkdAvkeIV~~ELdNL~~ei~~~k 55 (75)
T PHA01750 20 AIIQLYLKIKQA---------LKDAVKEIVNSELDNLKTEIEELK 55 (75)
T ss_pred HHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778777554 4677888888777 4554444444
No 20
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=27.67 E-value=69 Score=24.44 Aligned_cols=56 Identities=20% Similarity=0.351 Sum_probs=40.9
Q ss_pred HHHHHHHHHhc-CCCCchHHHHHH----HH--HHHHHhhhcccccHHHHHHHHCCch---HHHHHH
Q 030948 36 LYNKTLKEIQA-VPPDEGYRKAVE----SF--TRQRLKVCQEEEDWEQIEKRLGCGQ---VEELIE 91 (168)
Q Consensus 36 lY~~tL~~L~~-iPe~s~YRq~tE----~i--tk~RL~IVe~~~di~~iE~~ig~GQ---IEElI~ 91 (168)
+..-++..++. +|+++-|+.-+- .. +..-..+|+..=|...|+++|..|+ ++|.+.
T Consensus 4 ~L~f~~~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~ 69 (109)
T cd05492 4 LLKFIVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKA 69 (109)
T ss_pred hHHHHHHHHHhcCcccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHH
Confidence 44556677777 999999987663 22 3334678888889999999999998 555443
No 21
>COG1420 HrcA Transcriptional regulator of heat shock gene [Transcription]
Probab=27.63 E-value=89 Score=28.47 Aligned_cols=49 Identities=35% Similarity=0.542 Sum_probs=36.9
Q ss_pred cCCCCchHHHHHHHHHHHHHhhhc-ccccHHHHHHHHCCch--HHHHHHHHHHHHH
Q 030948 46 AVPPDEGYRKAVESFTRQRLKVCQ-EEEDWEQIEKRLGCGQ--VEELIEEAQDELT 98 (168)
Q Consensus 46 ~iPe~s~YRq~tE~itk~RL~IVe-~~~di~~iE~~ig~GQ--IEElI~qAe~EL~ 98 (168)
.+|.+.+||-||..+.+ +-+ +..+...++..+..+- +|++|+.|-.-|+
T Consensus 66 RvPT~~Gyr~YVd~ll~----~~~~~~~e~~~i~~~l~~~~~~~e~~l~~a~~~Ls 117 (346)
T COG1420 66 RVPTDKGYRYYVDHLLE----VEDLSEEERRRIESFLESEGYDLEDLLQKAAQLLS 117 (346)
T ss_pred cCCcHhHHHHHHHHhcc----cCCCChHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 59999999999998754 222 2344568888887776 9999999977665
No 22
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=27.41 E-value=56 Score=24.19 Aligned_cols=55 Identities=9% Similarity=0.214 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHH-HHHHHHhhhcccccHHHHHHHHCCchHH
Q 030948 33 LINLYNKTLKEIQAVPPDEGYRKAVES-FTRQRLKVCQEEEDWEQIEKRLGCGQVE 87 (168)
Q Consensus 33 L~~lY~~tL~~L~~iPe~s~YRq~tE~-itk~RL~IVe~~~di~~iE~~ig~GQIE 87 (168)
|..+...+|+.|...|.++.++.-|.. ..-.=.++|+..-|..+|.++|..|.-.
T Consensus 2 l~~~l~~il~~l~~~~~~~~F~~PV~~~~~pdY~~vIk~PmDL~tI~~kl~~~~Y~ 57 (98)
T cd05513 2 LQKALEQLIRQLQRKDPHGFFAFPVTDFIAPGYSSIIKHPMDFSTMKEKIKNNDYQ 57 (98)
T ss_pred HHHHHHHHHHHHHcCCccccccCcCCccccccHHHHHcCccCHHHHHHHHhCCCCC
Confidence 556778899999999999999986642 2333358888888999999999988743
No 23
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=26.31 E-value=2.3e+02 Score=23.80 Aligned_cols=69 Identities=17% Similarity=0.294 Sum_probs=43.6
Q ss_pred cccHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccceeecCCCCCCCCcCCCCCCCCchHHHHHHHHh
Q 030948 71 EEDWEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPWGVPDDYECEVIENDAPVPKHVPLHRPGPLPEEFHKTLEAV 149 (168)
Q Consensus 71 ~~di~~iE~~ig~GQIEElI~qAe~EL~L~~kM~ewKpWE~p~d~e~~v~~~~~~ipkh~~~~~p~~~~~~F~~~~~a~ 149 (168)
.+|+-+||++|. +|+.=|++++.++.-.+....+= ...+.+.+.....| ....-..++...|..-..++
T Consensus 161 ~~d~l~ie~~L~--~v~~eIe~~~~~~~~l~~~v~~s------ti~i~l~~~~~~~~--~~~~~~~~~~~al~~~~~~~ 229 (262)
T PF14257_consen 161 VEDLLEIERELS--RVRSEIEQLEGQLKYLDDRVDYS------TITISLYEPESIKP--ESPSFGSRFRDALKNGWNAL 229 (262)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhceE------EEEEEEEecCCCCC--CCCCcchHHHHHHHHHHHHH
Confidence 456779999996 99999999999999888877651 12355555544444 22222244555555444443
No 24
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=25.61 E-value=72 Score=23.82 Aligned_cols=69 Identities=20% Similarity=0.305 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHhcC-CCCchHHHHHHHH---HHHHHhhhcccccHHHHHHHHCCchHHHHHHHHHHHHHHH
Q 030948 31 EVLINLYNKTLKEIQAV-PPDEGYRKAVESF---TRQRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELTLI 100 (168)
Q Consensus 31 ~~L~~lY~~tL~~L~~i-Pe~s~YRq~tE~i---tk~RL~IVe~~~di~~iE~~ig~GQIEElI~qAe~EL~L~ 100 (168)
+.|...+-.+|+.|.+. |.+..++.-|... ...=.+||+..=|...|.++|..|+-.- +.+-.+.+.|+
T Consensus 2 ~~l~~~~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s-~~ef~~D~~li 74 (108)
T cd05495 2 EELRQALMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQD-PWQYVDDVWLM 74 (108)
T ss_pred HHHHHHHHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCC-HHHHHHHHHHH
Confidence 46777788888999888 8888888865332 1122378888889999999999998554 23445555554
No 25
>TIGR00331 hrcA heat shock gene repressor HrcA. In Bacillus subtilis, hrcA is the first gene of the dnaK operon and so is itself a heat shock gene.
Probab=25.13 E-value=77 Score=28.30 Aligned_cols=56 Identities=21% Similarity=0.329 Sum_probs=39.4
Q ss_pred cCCCCchHHHHHHHHHHHHHhhhcccccHHHHHHHHCC--chHHHHHHHHHHHHHHHHHHH
Q 030948 46 AVPPDEGYRKAVESFTRQRLKVCQEEEDWEQIEKRLGC--GQVEELIEEAQDELTLIGKMI 104 (168)
Q Consensus 46 ~iPe~s~YRq~tE~itk~RL~IVe~~~di~~iE~~ig~--GQIEElI~qAe~EL~L~~kM~ 104 (168)
.+|.+.+||.|+..+.. |..+ ..++-+.|.+.+.. +-++++|++|-+-|+=.-.+.
T Consensus 62 ript~kGYR~yv~~~~~-~~~~--~~~~k~~i~~~~~~~~~~~~~~l~~aa~~Ls~lT~~~ 119 (337)
T TIGR00331 62 RIPTDKGYRYYVDHLLK-VDSL--TEEEKRRIQNQFLQRRFYLEKVLQLAASLLSELTNYT 119 (337)
T ss_pred cCcChhHHHHHHHHhcc-cCCC--CHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCe
Confidence 49999999999998875 2221 23455666666654 469999999988777555544
No 26
>KOG0892 consensus Protein kinase ATM/Tel1, involved in telomere length regulation and DNA repair [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=24.81 E-value=35 Score=38.91 Aligned_cols=99 Identities=22% Similarity=0.266 Sum_probs=61.2
Q ss_pred Hhhhhhhhhhhcccccccccc-----cCCChHHHHHHHHHHHHHHHhc-----------CCCCchHHHH--HHHHHHHHH
Q 030948 4 RVIGRPLMAKVKQTTGITGLD-----VVPNAREVLINLYNKTLKEIQA-----------VPPDEGYRKA--VESFTRQRL 65 (168)
Q Consensus 4 ~r~~~~l~~~~KktTGltGL~-----V~pnPr~~L~~lY~~tL~~L~~-----------iPe~s~YRq~--tE~itk~RL 65 (168)
||.||-..++ -||||.. -|.--.++|+.-|...|..|+- -|--+.|+|- =|+.+| +
T Consensus 2669 FRLTRDiVdg----mGItGveGvFrRccE~t~~vlR~~~~~lltileVl~yDPLf~W~msplK~~~~q~~e~~e~~n--~ 2742 (2806)
T KOG0892|consen 2669 FRLTRDIVDG----MGITGVEGVFRRCCEFTLEVLRREKESLLTILEVLLYDPLFSWLMSPLKALKKQKEEDEENFN--L 2742 (2806)
T ss_pred ceeehhhccc----cCccCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcchHHHhhcHHHHHHHHHhhcchhcc--c
Confidence 5666665554 3555543 3555667777777666666552 4777788883 334444 2
Q ss_pred hhhcc----------------cccHHHHHH----HHCCchHHHHHHHHHHHHHHHHHHHhcCCC
Q 030948 66 KVCQE----------------EEDWEQIEK----RLGCGQVEELIEEAQDELTLIGKMIEWDPW 109 (168)
Q Consensus 66 ~IVe~----------------~~di~~iE~----~ig~GQIEElI~qAe~EL~L~~kM~ewKpW 109 (168)
+=+++ ..-++..|. -+ .|||+++|+||-|==.|....--|+||
T Consensus 2743 ~~~~~~~~~nd~~a~r~l~r~q~kl~g~e~g~~~sV-e~qv~~LIqqA~dpsnLs~~fpGW~a~ 2805 (2806)
T KOG0892|consen 2743 SGNITEDASNDRNAVRALMRAQRKLDGVEQGTMLSV-EAQVQELIQQATDPSNLSLMFPGWSAF 2805 (2806)
T ss_pred ccchhhhhccchHHHHHHHHHHHHhhhhhccccccH-HHHHHHHHHHhcCchhhhhhcCCCcCc
Confidence 21111 011111111 12 389999999999999999999999999
No 27
>PF14966 DNA_repr_REX1B: DNA repair REX1-B
Probab=24.45 E-value=2.4e+02 Score=20.99 Aligned_cols=55 Identities=25% Similarity=0.336 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhcCCCC---chHHHHHHHHHHHHHhhhcccccHHHHHHHHC--Cch--HHHHHHH
Q 030948 35 NLYNKTLKEIQAVPPD---EGYRKAVESFTRQRLKVCQEEEDWEQIEKRLG--CGQ--VEELIEE 92 (168)
Q Consensus 35 ~lY~~tL~~L~~iPe~---s~YRq~tE~itk~RL~IVe~~~di~~iE~~ig--~GQ--IEElI~q 92 (168)
.+|++.=+..+..-.+ ..||+.+-.+|..=-+ ...+|-+||+.|. .|+ +.++|..
T Consensus 17 ~~Y~~~~~gf~~yl~~~~~~~y~~~~~~iT~~f~~---~S~ei~~ie~~L~~~~~~~~la~~i~~ 78 (97)
T PF14966_consen 17 QLYNRFEEGFKKYLRSGPEEAYRQLCHEITQEFSA---ISKEILAIEAELRDEHERPDLAELIRE 78 (97)
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH---HHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 3555555555432222 9999999998875443 3667899999997 333 5666653
No 28
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=24.33 E-value=47 Score=26.03 Aligned_cols=19 Identities=42% Similarity=0.754 Sum_probs=14.3
Q ss_pred ccccCCChHHHHHHHHHHHH
Q 030948 22 GLDVVPNAREVLINLYNKTL 41 (168)
Q Consensus 22 GL~V~pnPr~~L~~lY~~tL 41 (168)
.|.|||+|. .|+.+|++||
T Consensus 89 Al~V~~qP~-~LL~i~q~tl 107 (121)
T PF02064_consen 89 ALKVCPQPA-ELLQIYQKTL 107 (121)
T ss_dssp HHHTSSSHH-HHHHHHHHHS
T ss_pred HHHhCCCHH-HHHHHHHhhC
Confidence 678999998 4566677665
No 29
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=24.25 E-value=1.4e+02 Score=22.44 Aligned_cols=54 Identities=15% Similarity=0.271 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHH-HHHHHHhhhcccccHHHHHHHHCCchH
Q 030948 33 LINLYNKTLKEIQAVPPDEGYRKAVES-FTRQRLKVCQEEEDWEQIEKRLGCGQV 86 (168)
Q Consensus 33 L~~lY~~tL~~L~~iPe~s~YRq~tE~-itk~RL~IVe~~~di~~iE~~ig~GQI 86 (168)
|..+..++++.|.+.|.+..+++-+.. ....=..+|...-|...|++++..|..
T Consensus 1 ~~~~l~~ii~~l~~~~~s~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y 55 (112)
T cd05511 1 LSFILDEIVNELKNLPDSWPFHTPVNKKKVPDYYKIIKRPMDLQTIRKKISKHKY 55 (112)
T ss_pred CHHHHHHHHHHHHhCCCchhhcCCCChhhcccHHHHhcCCCCHHHHHHHHhcCCC
Confidence 456778899999999988888887742 122223788888899999999998874
No 30
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=23.93 E-value=2.9e+02 Score=25.25 Aligned_cols=65 Identities=26% Similarity=0.388 Sum_probs=46.2
Q ss_pred HHHHHHHHHhc--CCCCchHHHHHHHHHHHHHhhhccc------------------ccHHHHHHHHCCchHHHHHHH---
Q 030948 36 LYNKTLKEIQA--VPPDEGYRKAVESFTRQRLKVCQEE------------------EDWEQIEKRLGCGQVEELIEE--- 92 (168)
Q Consensus 36 lY~~tL~~L~~--iPe~s~YRq~tE~itk~RL~IVe~~------------------~di~~iE~~ig~GQIEElI~q--- 92 (168)
=+.+++-.|+- =+..-.||.+.|++-+++-+|...- +.|..-|+.|| .|+|.+|++
T Consensus 199 EvERV~PqLKv~~~~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN-~qle~l~~eYr~ 277 (359)
T PF10498_consen 199 EVERVLPQLKVTIRADAKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYIN-NQLEPLIQEYRS 277 (359)
T ss_pred HHHHHhhhheeeccCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHH
Confidence 35566666662 3455689999999999999888653 35567788898 699999874
Q ss_pred HHHHHHHHH
Q 030948 93 AQDELTLIG 101 (168)
Q Consensus 93 Ae~EL~L~~ 101 (168)
+.++|+=+.
T Consensus 278 ~~~~ls~~~ 286 (359)
T PF10498_consen 278 AQDELSEVQ 286 (359)
T ss_pred HHHHHHHHH
Confidence 555555443
No 31
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=23.73 E-value=2.5e+02 Score=22.93 Aligned_cols=35 Identities=9% Similarity=0.285 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 030948 31 EVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRL 65 (168)
Q Consensus 31 ~~L~~lY~~tL~~L~~iPe~s~YRq~tE~itk~RL 65 (168)
..|..+|+...+.|..+|.+..|......++..=+
T Consensus 80 e~I~~v~~~a~e~L~~l~~~~~Y~~~L~~LI~~a~ 114 (185)
T PRK01194 80 EILKDYLDIAYEHLMNITKSKEYDSILNKMIEVAI 114 (185)
T ss_pred HHHHHHHHHHHHHHHcccCCchHHHHHHHHHHHHH
Confidence 56778999999999999977799999999998743
No 32
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=22.64 E-value=1.9e+02 Score=21.67 Aligned_cols=59 Identities=19% Similarity=0.298 Sum_probs=42.1
Q ss_pred CChHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhhhcccccHHHHHHHHCCchHH
Q 030948 27 PNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEEDWEQIEKRLGCGQVE 87 (168)
Q Consensus 27 pnPr~~L~~lY~~tL~~L~~iPe~s~YRq~tE~itk~RL~IVe~~~di~~iE~~ig~GQIE 87 (168)
.+=+.+|..-+..++..-+.+ ...|+...-+.+..++.||..+-..++|++.+..|+=+
T Consensus 87 ~~q~~~L~~~f~~~m~~fq~~--Q~~~~~~~k~~i~Rq~~i~~~~~tdeei~~~~~~~~~~ 145 (151)
T cd00179 87 KTQHSGLSKKFVEVMTEFNKA--QRKYRERYKERIQRQLEITGGEATDEELEDMLESGNSE 145 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHcCChh
Confidence 344445555555555555543 45788888888999999999888888888888887433
No 33
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=22.53 E-value=80 Score=22.91 Aligned_cols=52 Identities=21% Similarity=0.306 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHH-HHHHHHHhhhcccccHHHHHHHHCCchH
Q 030948 35 NLYNKTLKEIQAVPPDEGYRKAVE-SFTRQRLKVCQEEEDWEQIEKRLGCGQV 86 (168)
Q Consensus 35 ~lY~~tL~~L~~iPe~s~YRq~tE-~itk~RL~IVe~~~di~~iE~~ig~GQI 86 (168)
..+.++|+.|.+.|.+..++.-+- .....=..+|...-|...|.++|..|.-
T Consensus 3 ~~c~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iIk~PmdL~tI~~kl~~~~Y 55 (97)
T cd05503 3 ALCETILDEMEAHEDAWPFLEPVNTKLVPGYRKIIKKPMDFSTIREKLESGQY 55 (97)
T ss_pred HHHHHHHHHHHcCCCchhhcCCCCccccCCHHHHhCCCCCHHHHHHHHccCCC
Confidence 457789999999998888886542 1223334788888899999999998873
No 34
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=21.17 E-value=2.5e+02 Score=19.09 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=16.5
Q ss_pred cHHHHHHHHCCchHHHHHHHHHHHHHHH
Q 030948 73 DWEQIEKRLGCGQVEELIEEAQDELTLI 100 (168)
Q Consensus 73 di~~iE~~ig~GQIEElI~qAe~EL~L~ 100 (168)
.+..+|..|. +.+++|.|-+-|+.-+
T Consensus 26 ~i~~~e~~l~--ea~~~l~qMe~E~~~~ 51 (79)
T PF05008_consen 26 LIREIERDLD--EAEELLKQMELEVRSL 51 (79)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHhC
Confidence 4556666664 6777777776666533
No 35
>PF07904 Eaf7: Chromatin modification-related protein EAF7; InterPro: IPR012423 The Saccharomyces cerevisiae (Baker's yeast) member of this family P53911 from SWISSPROT is part of NuA4, the only essential histone acetyltransferase complex in S. cerevisiae involved in global histone acetylation []. ; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0043189 H4/H2A histone acetyltransferase complex
Probab=20.55 E-value=61 Score=23.92 Aligned_cols=23 Identities=26% Similarity=0.644 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcc
Q 030948 94 QDELTLIGKMIEWDPWGVPDDYE 116 (168)
Q Consensus 94 e~EL~L~~kM~ewKpWE~p~d~e 116 (168)
++|+.|.+-|.+|||=.+-.-..
T Consensus 1 e~Ei~Lf~a~~~~KPvGi~KHF~ 23 (91)
T PF07904_consen 1 EDEIRLFRAMCRYKPVGIHKHFH 23 (91)
T ss_pred ChHHHHHHHHHhcCCCccchHHH
Confidence 47999999999999987644433
No 36
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=20.47 E-value=2e+02 Score=21.72 Aligned_cols=69 Identities=20% Similarity=0.227 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHhcC-CCCchHHHHHHH-HHHHHHhhhcccccHHHHHHHHCCchHHHHHHHHHHHHHHH
Q 030948 31 EVLINLYNKTLKEIQAV-PPDEGYRKAVES-FTRQRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELTLI 100 (168)
Q Consensus 31 ~~L~~lY~~tL~~L~~i-Pe~s~YRq~tE~-itk~RL~IVe~~~di~~iE~~ig~GQIEElI~qAe~EL~L~ 100 (168)
+.|...+.++|+.|... |.+..++.-+.. -...=..+|+..-|...|+++|..|+-.- +.+-.+.+.|+
T Consensus 6 ~~~~~~~~~il~~l~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s-~~ef~~D~~Li 76 (112)
T cd05510 6 EEFYESLDKVLNELKTYTEHSTPFLTKVSKREAPDYYDIIKKPMDLGTMLKKLKNLQYKS-KAEFVDDLNLI 76 (112)
T ss_pred HHHHHHHHHHHHHHHhcCccccchhcCCChhhcCCHHHHhcCccCHHHHHHHHhCCCCCC-HHHHHHHHHHH
Confidence 56777888999999888 777777775532 11112478888889999999999998443 23334445544
No 37
>smart00297 BROMO bromo domain.
Probab=20.17 E-value=1.3e+02 Score=21.16 Aligned_cols=59 Identities=17% Similarity=0.240 Sum_probs=42.9
Q ss_pred ChHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH-HHHHHhhhcccccHHHHHHHHCCchH
Q 030948 28 NAREVLINLYNKTLKEIQAVPPDEGYRKAVESF-TRQRLKVCQEEEDWEQIEKRLGCGQV 86 (168)
Q Consensus 28 nPr~~L~~lY~~tL~~L~~iPe~s~YRq~tE~i-tk~RL~IVe~~~di~~iE~~ig~GQI 86 (168)
.....|..++..+++.+.+-|-+..+++-+..- ...=.++|...=|+..|+++|..|.-
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~F~~~~~~~~~p~Y~~~i~~P~dl~~I~~kl~~~~Y 62 (107)
T smart00297 3 KLQKKLQSLLKAVLDKLDSHRLSWPFLKPVDRKEAPDYYDIIKKPMDLSTIKKKLENGKY 62 (107)
T ss_pred hhHHHHHHHHHHHHHHHHhCccchhhccCCChhhccCHHHHhcCCCCHHHHHHHHhcCCC
Confidence 345678889999999998777777777654322 11123677778899999999998873
No 38
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=20.10 E-value=2.9e+02 Score=23.76 Aligned_cols=84 Identities=21% Similarity=0.228 Sum_probs=49.6
Q ss_pred HHHHHHHHHHh-cCCCCchHHHHHHHHHHHHHhhhcccccHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 030948 35 NLYNKTLKEIQ-AVPPDEGYRKAVESFTRQRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPWGVPD 113 (168)
Q Consensus 35 ~lY~~tL~~L~-~iPe~s~YRq~tE~itk~RL~IVe~~~di~~iE~~ig~GQIEElI~qAe~EL~L~~kM~ewKpWE~p~ 113 (168)
.+|.++....+ .+|+.+.-=-+-|++-|-|.. -+.+|+++.+..=+|-|..-+++-.-.+.--+--.=+..+
T Consensus 102 ~~~d~~~~~~k~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (197)
T PRK12585 102 RIRDQLRSVKKDDIKKKKSLIIRQEQIEKARQE-------REELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSD 174 (197)
T ss_pred hhHHHHHHHHhhhhhhcchhhccHHHHHHHHHh-------HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHhhcc
Confidence 45666666666 477777766666777666643 3456677666666666655544444443332222223466
Q ss_pred CccceeecCCCC
Q 030948 114 DYECEVIENDAP 125 (168)
Q Consensus 114 d~e~~v~~~~~~ 125 (168)
|.+-++++++..
T Consensus 175 ~~~~~~~~~~~~ 186 (197)
T PRK12585 175 DSEHEIIEQDES 186 (197)
T ss_pred ccccchhhhhhh
Confidence 777777776654
Done!