Query 030948
Match_columns 168
No_of_seqs 114 out of 188
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 10:48:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030948.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030948hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w1n_A Phosphatidylinositol 3- 94.2 0.016 5.4E-07 35.2 1.2 27 83-109 6-32 (33)
2 2ckz_A DNA-directed RNA polyme 48.2 8.8 0.0003 30.1 2.1 64 29-92 51-156 (161)
3 3iv1_A Tumor susceptibility ge 34.4 83 0.0029 22.2 5.2 53 51-103 2-61 (78)
4 3ayh_A DNA-directed RNA polyme 32.6 74 0.0025 23.8 5.1 61 31-93 50-131 (136)
5 1iyr_A DFF45, DNA fragmentatio 25.5 2.1E+02 0.0073 21.4 6.4 57 36-101 17-77 (111)
6 3ax2_A Mitochondrial import re 23.2 30 0.001 23.9 1.3 19 22-41 43-61 (73)
7 3uv5_A Transcription initiatio 20.4 34 0.0012 27.8 1.2 59 27-85 9-68 (265)
8 2hsb_A Hypothetical UPF0332 pr 17.5 1.2E+02 0.0041 21.0 3.5 28 83-110 2-29 (126)
9 3v6i_A V-type ATP synthase sub 17.1 1.3E+02 0.0045 22.7 3.9 36 31-66 77-112 (187)
10 3mtu_E Head morphogenesis prot 16.8 2.3E+02 0.008 19.9 4.8 44 38-83 12-55 (77)
No 1
>1w1n_A Phosphatidylinositol 3-kinase TOR1; target of rapamycin, Ser/Thr kinase, redox-regulation, disulfide bond, transferase; NMR {Saccharomyces cerevisiae} PDB: 2kio_A 2kit_A
Probab=94.19 E-value=0.016 Score=35.23 Aligned_cols=27 Identities=33% Similarity=0.524 Sum_probs=25.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhcCCC
Q 030948 83 CGQVEELIEEAQDELTLIGKMIEWDPW 109 (168)
Q Consensus 83 ~GQIEElI~qAe~EL~L~~kM~ewKpW 109 (168)
.|||++||.||-|--.|+....-|-||
T Consensus 6 ~~QV~~LI~~At~~~NL~~my~GW~p~ 32 (33)
T 1w1n_A 6 PEQVDKLIQQATSIERLCQHYIGWCPF 32 (33)
T ss_dssp THHHHHHHHHHHHHHHHHTTSCSCCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHhhhcccC
Confidence 389999999999999999999999987
No 2
>2ckz_A DNA-directed RNA polymerase III 18 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=48.20 E-value=8.8 Score=30.08 Aligned_cols=64 Identities=14% Similarity=0.176 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHhcCCC----------------------------CchHHHHHHHHHHHHHhhhc-----------
Q 030948 29 AREVLINLYNKTLKEIQAVPP----------------------------DEGYRKAVESFTRQRLKVCQ----------- 69 (168)
Q Consensus 29 Pr~~L~~lY~~tL~~L~~iPe----------------------------~s~YRq~tE~itk~RL~IVe----------- 69 (168)
+++.|..+-..+++-|...|. +...|+.++.+-.++|.-.+
T Consensus 51 ~~~~L~ti~~e~~~YL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~~l~~~L~~~~Ltk~E~lqivNl~P~s 130 (161)
T 2ckz_A 51 NHPELQGITRNVVNYLSINKNFINQEDEGEERESSGAKDAEKSGISKMSDESFAELMTKLNSFKLFKAEKLQIVNQLPAN 130 (161)
T ss_dssp CCHHHHHHHHHHHHHHTC--------------------------------------------------------------
T ss_pred CCccHHHHHHHHHHHHHhCCccccccccccccccccccccccccccccCHHHHHHHHHHHHhcCCCHHHHHHHhccCCCC
Confidence 457788999999999999887 23344455555555442211
Q ss_pred ---ccccHHHHHHHHCCchHHHHHHH
Q 030948 70 ---EEEDWEQIEKRLGCGQVEELIEE 92 (168)
Q Consensus 70 ---~~~di~~iE~~ig~GQIEElI~q 92 (168)
-.--|+..|+++...||+++|..
T Consensus 131 ~vel~~iIEe~e~Rfsee~ie~IL~i 156 (161)
T 2ckz_A 131 MVHLYSIVEECDARFDEKTIEEMLEI 156 (161)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHH
Confidence 12367788999999999998853
No 3
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=34.44 E-value=83 Score=22.18 Aligned_cols=53 Identities=21% Similarity=0.280 Sum_probs=38.4
Q ss_pred chHHHHHHHHHHHHH-hhhcc----cccHHHHHHHHCCch--HHHHHHHHHHHHHHHHHH
Q 030948 51 EGYRKAVESFTRQRL-KVCQE----EEDWEQIEKRLGCGQ--VEELIEEAQDELTLIGKM 103 (168)
Q Consensus 51 s~YRq~tE~itk~RL-~IVe~----~~di~~iE~~ig~GQ--IEElI~qAe~EL~L~~kM 103 (168)
|..+.+||...+.|+ ..+.. -+.+...++.|..|+ |+++|..-+.|-.-+.+=
T Consensus 2 ~SllSAVeDKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~n 61 (78)
T 3iv1_A 2 SSLISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKN 61 (78)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888 33332 245667788898888 999999888887666553
No 4
>3ayh_A DNA-directed RNA polymerase III subunit RPC9; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=32.63 E-value=74 Score=23.76 Aligned_cols=61 Identities=21% Similarity=0.121 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhh-------------hcc--------cccHHHHHHHHCCchHHHH
Q 030948 31 EVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKV-------------CQE--------EEDWEQIEKRLGCGQVEEL 89 (168)
Q Consensus 31 ~~L~~lY~~tL~~L~~iPe~s~YRq~tE~itk~RL~I-------------Ve~--------~~di~~iE~~ig~GQIEEl 89 (168)
..|..+..++++-|+..|... .|+-|++.+.+-.+ |.- .--|+..|+++...||+++
T Consensus 50 ~~l~ti~~e~l~YL~~~p~~~--~q~~e~i~~l~~~L~~~~Ltk~E~LqivNl~P~t~vel~~iIEe~e~Rfsee~ie~I 127 (136)
T 3ayh_A 50 ENLRTIQFEILKYLSSQGNCE--GLTKERFLDCIAIFNEFELTKAEILVILNNKPSSVPELYACIEGIEERFKEEDIFKL 127 (136)
T ss_dssp HHHHHHHHHHHHHHHTTTCCT--TCCHHHHHHHHHTTTTTCCCHHHHHHHHHHCCCSHHHHHHHSTTHHHHHTTTTHHHH
T ss_pred chHHHHHHHHHHHHHhCCCcc--ccCHHHHHHHHHHHHhcCCCHHHHHHHhccCCCCHHHHHHHHHhcccCCCHHHHHHH
Confidence 557788888999999998765 23344444333222 111 1245577899999999999
Q ss_pred HHHH
Q 030948 90 IEEA 93 (168)
Q Consensus 90 I~qA 93 (168)
|..-
T Consensus 128 L~~i 131 (136)
T 3ayh_A 128 VEKI 131 (136)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8643
No 5
>1iyr_A DFF45, DNA fragmentation factor alpha subunit; apoptosis, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: DNA; NMR {Homo sapiens} SCOP: a.164.1.1 PDB: 1koy_A*
Probab=25.54 E-value=2.1e+02 Score=21.41 Aligned_cols=57 Identities=23% Similarity=0.217 Sum_probs=44.5
Q ss_pred HHHHHHHHHh--cCCCCchHHHHHHHHHHHHHhhhcccccHHHHHHHHCCch--HHHHHHHHHHHHHHHH
Q 030948 36 LYNKTLKEIQ--AVPPDEGYRKAVESFTRQRLKVCQEEEDWEQIEKRLGCGQ--VEELIEEAQDELTLIG 101 (168)
Q Consensus 36 lY~~tL~~L~--~iPe~s~YRq~tE~itk~RL~IVe~~~di~~iE~~ig~GQ--IEElI~qAe~EL~L~~ 101 (168)
+-+.||.+|+ ..|+-+.--|..|-++ .+|.+++=..|+++. .|-|-+-++.||++=-
T Consensus 17 lsS~iL~~LKeK~aPElsLSsqdLElV~---------kedpkALa~aL~Wd~~kt~avqqAC~qELs~Rl 77 (111)
T 1iyr_A 17 LASHILTALREKQAPELSLSSQDLELVT---------KEDPKALAVALNWDIKKTETVQEACERELALRL 77 (111)
T ss_dssp CCHHHHHHHHTTCCTTTTSCHHHHHHHH---------TSCHHHHHHHTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCccccccHHHHHHHH---------ccCHHHHHHHHcccHHHHHHHHHHHHHHHHHHH
Confidence 3478999997 4999887766666544 468889999998876 7888888999998744
No 6
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=23.20 E-value=30 Score=23.91 Aligned_cols=19 Identities=21% Similarity=0.475 Sum_probs=13.8
Q ss_pred ccccCCChHHHHHHHHHHHH
Q 030948 22 GLDVVPNAREVLINLYNKTL 41 (168)
Q Consensus 22 GL~V~pnPr~~L~~lY~~tL 41 (168)
.|.|||+|.. |+.+|++||
T Consensus 43 Al~Vc~qP~~-LL~i~q~tl 61 (73)
T 3ax2_A 43 AIAVCGQPQQ-LLQVLQQTL 61 (73)
T ss_dssp HHHTCSSCHH-HHHHHHHHS
T ss_pred HHHHcCCHHH-HHHHHHhhC
Confidence 5779999975 556666664
No 7
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=20.44 E-value=34 Score=27.85 Aligned_cols=59 Identities=8% Similarity=0.238 Sum_probs=41.7
Q ss_pred CChHHHHHHHHHHHHHHHhcCCCCchHHHHHHH-HHHHHHhhhcccccHHHHHHHHCCch
Q 030948 27 PNAREVLINLYNKTLKEIQAVPPDEGYRKAVES-FTRQRLKVCQEEEDWEQIEKRLGCGQ 85 (168)
Q Consensus 27 pnPr~~L~~lY~~tL~~L~~iPe~s~YRq~tE~-itk~RL~IVe~~~di~~iE~~ig~GQ 85 (168)
-+|...|..++..+|+.|...|.+..+++-|.. ....=..||+..=|..+|+++|..|.
T Consensus 9 ~~~~~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~ 68 (265)
T 3uv5_A 9 TDPMVTLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRL 68 (265)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTC
T ss_pred cCcHHHHHHHHHHHHHHHHcCCCchhhhCCCChhhcCCHHHHhCCCCcHHHHHHHHHcCC
Confidence 357789999999999999988887777663321 12223356666678888888877654
No 8
>2hsb_A Hypothetical UPF0332 protein AF0298; DUF103 family, structural genomics, joint center for structu genomics, JCSG; HET: MSE PG4; 1.95A {Archaeoglobus fulgidus}
Probab=17.51 E-value=1.2e+02 Score=20.97 Aligned_cols=28 Identities=18% Similarity=0.127 Sum_probs=22.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhcCCCC
Q 030948 83 CGQVEELIEEAQDELTLIGKMIEWDPWG 110 (168)
Q Consensus 83 ~GQIEElI~qAe~EL~L~~kM~ewKpWE 110 (168)
...++..+.+|++-|+.++.+++-..|.
T Consensus 2 ~~~~~~~l~~A~~~L~~A~~~~~~g~y~ 29 (126)
T 2hsb_A 2 MDELELRIRKAEKLVQDAKKEFEMGLYE 29 (126)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 4467888899999999999888877665
No 9
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=17.10 E-value=1.3e+02 Score=22.75 Aligned_cols=36 Identities=19% Similarity=0.386 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHh
Q 030948 31 EVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLK 66 (168)
Q Consensus 31 ~~L~~lY~~tL~~L~~iPe~s~YRq~tE~itk~RL~ 66 (168)
..+..+|....+.|..++.+..|......++..=+.
T Consensus 77 eli~~v~~~a~~~L~~~~~~~~Y~~~L~~Li~ea~~ 112 (187)
T 3v6i_A 77 EVLEEVRRRVREALEALPQKPEWPEVVRKLALEALE 112 (187)
T ss_dssp HHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHH
Confidence 456778899999999999998899999999988554
No 10
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=16.85 E-value=2.3e+02 Score=19.90 Aligned_cols=44 Identities=11% Similarity=0.278 Sum_probs=29.7
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHHHhhhcccccHHHHHHHHCC
Q 030948 38 NKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEEDWEQIEKRLGC 83 (168)
Q Consensus 38 ~~tL~~L~~iPe~s~YRq~tE~itk~RL~IVe~~~di~~iE~~ig~ 83 (168)
..||++|-. |+ -+--.-||.+-+-|.+-+.-+..|..||++|.+
T Consensus 12 ~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~EKTIDDLEDkL~~ 55 (77)
T 3mtu_E 12 EDILNKLLD-PE-LAQSERTEALQQLRVNYGSFVSEYNDLEEKVAH 55 (77)
T ss_dssp HHHHHHTTC-C----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-HH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666643 22 222345889999999888888888888888854
Done!