Query 030948
Match_columns 168
No_of_seqs 114 out of 188
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 10:48:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030948.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030948hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1z54a1 d.38.1.1 (A:1-132) Pro 22.7 21 0.0015 23.2 2.1 20 132-151 112-131 (132)
2 d1eqfa1 a.29.2.1 (A:1359-1497) 19.5 20 0.0015 24.8 1.5 58 28-85 22-80 (139)
3 d2dm9a1 d.81.4.1 (A:81-198) V- 19.3 64 0.0047 21.0 4.1 34 32-66 2-35 (118)
4 d1em2a_ d.129.3.2 (A:) Lipid t 15.8 42 0.0031 23.3 2.6 29 83-111 3-32 (214)
5 d1irqa_ a.43.1.4 (A:) Omega tr 15.3 65 0.0047 19.2 2.9 24 74-97 16-39 (48)
6 d1iyra_ a.164.1.1 (A:) C-termi 14.5 1.6E+02 0.012 19.3 6.4 54 37-99 14-71 (83)
7 d1nbfa_ d.3.1.9 (A:) Ubiquitin 12.4 29 0.0021 26.0 0.8 10 15-24 1-10 (347)
8 d3d7ca1 a.29.2.1 (A:731-832) G 11.6 23 0.0016 23.1 -0.1 55 32-86 2-57 (102)
9 d2o5ua1 d.38.1.1 (A:5-143) Hyp 11.5 53 0.0039 20.9 1.9 18 132-149 121-138 (139)
10 d1y8aa1 c.108.1.24 (A:1-308) H 11.5 42 0.0031 27.2 1.6 25 39-63 88-116 (308)
No 1
>d1z54a1 d.38.1.1 (A:1-132) Probable thioesterase TTHA0908 {Thermus thermophilus [TaxId: 274]}
Probab=22.73 E-value=21 Score=23.24 Aligned_cols=20 Identities=20% Similarity=0.386 Sum_probs=17.4
Q ss_pred CCCCCCCchHHHHHHHHhhc
Q 030948 132 LHRPGPLPEEFHKTLEAVTK 151 (168)
Q Consensus 132 ~~~p~~~~~~F~~~~~a~~~ 151 (168)
..||.++|+++.+.|++|..
T Consensus 112 ~~k~~~iP~~~~~~l~~l~~ 131 (132)
T d1z54a1 112 GERAARIPEDIYRALSVLHL 131 (132)
T ss_dssp SSSBCCCCHHHHHHHHHHSC
T ss_pred CCCCccCCHHHHHHHHHHhc
Confidence 46889999999999999865
No 2
>d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.51 E-value=20 Score=24.83 Aligned_cols=58 Identities=9% Similarity=0.241 Sum_probs=43.6
Q ss_pred ChHHHHHHHHHHHHHHHhcCCCCchHHHHHHH-HHHHHHhhhcccccHHHHHHHHCCch
Q 030948 28 NAREVLINLYNKTLKEIQAVPPDEGYRKAVES-FTRQRLKVCQEEEDWEQIEKRLGCGQ 85 (168)
Q Consensus 28 nPr~~L~~lY~~tL~~L~~iPe~s~YRq~tE~-itk~RL~IVe~~~di~~iE~~ig~GQ 85 (168)
+|.-.|..+...+|+.|...|.+..++.-|-. ..-.=.+||..-=|...|+++|..|.
T Consensus 22 ~~~~~l~~~l~~il~~l~~~~~s~pF~~Pvd~~~~pdY~~iI~~PmdL~tI~~kl~~~~ 80 (139)
T d1eqfa1 22 DPMVTLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRL 80 (139)
T ss_dssp CHHHHHHHHHHHHHHHHHTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHHcCCCchhhhCCCChhhccCHHHHcCChhhHHHHHHHHHcCC
Confidence 67888999999999999999988888764321 11112356666679999999998887
No 3
>d2dm9a1 d.81.4.1 (A:81-198) V-type ATP synthase subunit E {Pyrococcus horikoshii [TaxId: 53953]}
Probab=19.34 E-value=64 Score=20.99 Aligned_cols=34 Identities=12% Similarity=0.428 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHh
Q 030948 32 VLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLK 66 (168)
Q Consensus 32 ~L~~lY~~tL~~L~~iPe~s~YRq~tE~itk~RL~ 66 (168)
.+..+|++..+.|..++.+ .|++..+.++.+=+.
T Consensus 2 ~i~~v~~~a~~~l~~~~~~-~Y~~~L~~Li~~a~~ 35 (118)
T d2dm9a1 2 IISSVLEEVKRRLETMSED-EYFESVKALLKEAIK 35 (118)
T ss_dssp HHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccChh-HHHHHHHHHHHHHHH
Confidence 4678899999999999874 799999999876554
No 4
>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.77 E-value=42 Score=23.30 Aligned_cols=29 Identities=14% Similarity=0.457 Sum_probs=24.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHH-hcCCCCC
Q 030948 83 CGQVEELIEEAQDELTLIGKMI-EWDPWGV 111 (168)
Q Consensus 83 ~GQIEElI~qAe~EL~L~~kM~-ewKpWE~ 111 (168)
++|-+|.++|+++.+..+.+|+ +-.-|+.
T Consensus 3 s~~~~~y~~~~~e~~~~~~~il~~~~~W~~ 32 (214)
T d1em2a_ 3 SAQEREYIRQGKEATAVVDQILAQEENWKF 32 (214)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTGGGCEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhCCCCCeE
Confidence 5799999999999999999997 3457875
No 5
>d1irqa_ a.43.1.4 (A:) Omega transcriptional repressor {Streptococcus pyogenes [TaxId: 1314]}
Probab=15.26 E-value=65 Score=19.19 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=20.2
Q ss_pred HHHHHHHHCCchHHHHHHHHHHHH
Q 030948 74 WEQIEKRLGCGQVEELIEEAQDEL 97 (168)
Q Consensus 74 i~~iE~~ig~GQIEElI~qAe~EL 97 (168)
|-+||-.=++|.|.|+..|+-.|.
T Consensus 16 iikietaknggnvkevm~~~l~~~ 39 (48)
T d1irqa_ 16 IIKIETAKNGGNVKEVMDQALEEY 39 (48)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred eeEEEecccCCCHHHHHHHHHHHH
Confidence 557899999999999999987653
No 6
>d1iyra_ a.164.1.1 (A:) C-terminal domain of DFF45/ICAD (DFF-C domain) {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.51 E-value=1.6e+02 Score=19.34 Aligned_cols=54 Identities=22% Similarity=0.246 Sum_probs=42.2
Q ss_pred HHHHHHHHh--cCCCCchHHHHHHHHHHHHHhhhcccccHHHHHHHHCCch--HHHHHHHHHHHHHH
Q 030948 37 YNKTLKEIQ--AVPPDEGYRKAVESFTRQRLKVCQEEEDWEQIEKRLGCGQ--VEELIEEAQDELTL 99 (168)
Q Consensus 37 Y~~tL~~L~--~iPe~s~YRq~tE~itk~RL~IVe~~~di~~iE~~ig~GQ--IEElI~qAe~EL~L 99 (168)
-+.||.+|+ ..|+-+.--|..|-++ .+|.+++=..++++. ++-|-+-++.||++
T Consensus 14 ss~iL~~LKeK~aPElsLSsQdLElV~---------ke~~~Ala~aL~Wd~~k~~avqqAC~qELs~ 71 (83)
T d1iyra_ 14 ASHILTALREKQAPELSLSSQDLELVT---------KEDPKALAVALNWDIKKTETVQEACERELAL 71 (83)
T ss_dssp CHHHHHHHHTTCCTTTTSCHHHHHHHH---------TSCHHHHHHHTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCccccccHHHHHHHH---------ccCHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 368999997 4999887666665544 468888888898875 78888888999876
No 7
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.41 E-value=29 Score=25.99 Aligned_cols=10 Identities=50% Similarity=0.796 Sum_probs=8.6
Q ss_pred cccccccccc
Q 030948 15 KQTTGITGLD 24 (168)
Q Consensus 15 KktTGltGL~ 24 (168)
|+-||++||.
T Consensus 1 ~~~~G~vGL~ 10 (347)
T d1nbfa_ 1 KKHTGYVGLK 10 (347)
T ss_dssp CCSSSCCCBC
T ss_pred CCCCCCcCCe
Confidence 5789999996
No 8
>d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.55 E-value=23 Score=23.13 Aligned_cols=55 Identities=16% Similarity=0.173 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHH-HHHHHHhhhcccccHHHHHHHHCCchH
Q 030948 32 VLINLYNKTLKEIQAVPPDEGYRKAVES-FTRQRLKVCQEEEDWEQIEKRLGCGQV 86 (168)
Q Consensus 32 ~L~~lY~~tL~~L~~iPe~s~YRq~tE~-itk~RL~IVe~~~di~~iE~~ig~GQI 86 (168)
.|.....++|+.|.+-|.+..++.-+.. ....=.++|...=|...|+++|..|..
T Consensus 2 ~L~~~l~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y 57 (102)
T d3d7ca1 2 QLYTTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYY 57 (102)
T ss_dssp HHHHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHhCCCCCccCCCCChhhCcCHHHHcCCccCHHHHHHHhccCcc
Confidence 4677788888888877766666654421 111123577777799999999998874
No 9
>d2o5ua1 d.38.1.1 (A:5-143) Hypothetical thioesterase PA5185 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=11.52 E-value=53 Score=20.90 Aligned_cols=18 Identities=33% Similarity=0.641 Sum_probs=15.4
Q ss_pred CCCCCCCchHHHHHHHHh
Q 030948 132 LHRPGPLPEEFHKTLEAV 149 (168)
Q Consensus 132 ~~~p~~~~~~F~~~~~a~ 149 (168)
..+|.++|++|.+.|+++
T Consensus 121 ~~k~~~~P~~~r~~l~~~ 138 (139)
T d2o5ua1 121 SSRPVAIPQELRDALAAL 138 (139)
T ss_dssp TCCBCCCCHHHHHHHHTT
T ss_pred CCcCccCCHHHHHHHHhc
Confidence 358899999999999886
No 10
>d1y8aa1 c.108.1.24 (A:1-308) Hypothetical protein AF1437 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=11.48 E-value=42 Score=27.15 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=18.6
Q ss_pred HHHHHHh-cCCC---CchHHHHHHHHHHH
Q 030948 39 KTLKEIQ-AVPP---DEGYRKAVESFTRQ 63 (168)
Q Consensus 39 ~tL~~L~-~iPe---~s~YRq~tE~itk~ 63 (168)
.+|+.++ .||. +..||||.|+++++
T Consensus 88 ~~lk~l~~~m~~yIvSTSY~qyi~al~~~ 116 (308)
T d1y8aa1 88 KAMATLQERWTPVVISTSYTQYLRRTASM 116 (308)
T ss_dssp HHHHHHHTTCEEEEEEEEEHHHHHHHHHH
T ss_pred HHHHHHHhhCCcEEEeccHHHHHHHHHhh
Confidence 3555665 3664 78899999999875
Done!