Query 030949
Match_columns 168
No_of_seqs 158 out of 395
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 10:50:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030949.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030949hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3izc_Z 60S ribosomal protein R 100.0 4.6E-47 1.6E-51 303.7 -1.1 111 1-150 1-111 (155)
2 4a17_T RPL24, 60S ribosomal pr 100.0 7.2E-44 2.5E-48 286.1 4.7 94 1-133 3-96 (158)
3 2zkr_u 60S ribosomal protein L 100.0 1E-43 3.6E-48 284.7 2.0 92 1-132 1-93 (157)
4 3iz5_Z 60S ribosomal protein L 100.0 8.7E-44 3E-48 286.6 -0.3 95 1-133 3-97 (162)
5 1vq8_U 50S ribosomal protein L 100.0 5.7E-38 1.9E-42 221.3 2.1 64 1-64 1-64 (66)
6 3j21_V 50S ribosomal protein L 100.0 8.8E-35 3E-39 205.1 5.0 59 1-59 2-60 (66)
7 3jyw_S 60S ribosomal protein L 99.9 2.2E-29 7.6E-34 166.3 1.8 45 8-52 1-45 (45)
8 2hpu_A NOSL protein; alpha bet 91.4 0.093 3.2E-06 41.7 2.4 41 3-43 18-61 (175)
9 2l8e_A Polyhomeotic-like prote 86.0 0.15 5.1E-06 33.6 0.0 30 4-40 19-48 (49)
10 1mty_D Methane monooxygenase h 84.5 0.56 1.9E-05 43.0 3.1 55 4-64 402-465 (512)
11 3u52_A Phenol hydroxylase comp 73.3 1.9 6.5E-05 39.4 2.8 55 5-61 398-461 (511)
12 1zfo_A LAsp-1; LIM domain, zin 59.8 2.5 8.7E-05 24.5 0.6 24 3-29 3-26 (31)
13 3ge3_A Toluene-4-monooxygenase 59.3 6.5 0.00022 36.0 3.4 69 5-82 396-472 (500)
14 2iyb_E Testin, TESS, TES; LIM 58.7 4.7 0.00016 25.6 1.8 35 4-40 3-42 (65)
15 1a7i_A QCRP2 (LIM1); LIM domai 54.6 9.2 0.00031 25.0 2.7 35 3-40 7-44 (81)
16 2ww6_A Fibritin, T4 fibritin; 52.8 7 0.00024 23.3 1.7 15 14-28 6-20 (27)
17 2egq_A FHL1 protein; LIM domai 48.8 13 0.00046 23.7 2.8 28 3-30 15-43 (77)
18 2cu8_A Cysteine-rich protein 2 48.7 12 0.00041 24.1 2.6 34 3-39 9-45 (76)
19 1x68_A FHL5 protein; four-and- 47.0 13 0.00045 24.0 2.5 36 3-39 5-44 (76)
20 2ds5_A CLPX, ATP-dependent CLP 45.4 6.1 0.00021 25.9 0.7 10 3-12 11-20 (51)
21 2inc_A Toluene, O-xylene monoo 44.8 8 0.00028 35.0 1.6 54 5-60 395-456 (491)
22 1ovx_A ATP-dependent CLP prote 44.3 5.7 0.0002 27.7 0.4 22 3-26 18-39 (67)
23 3f6q_B LIM and senescent cell 43.9 18 0.0006 22.5 2.7 26 3-30 11-36 (72)
24 1wyh_A SLIM 2, skeletal muscle 40.7 16 0.00054 23.0 2.1 36 3-40 5-43 (72)
25 2das_A Zinc finger MYM-type pr 39.8 16 0.00056 25.3 2.2 38 5-44 22-59 (62)
26 1x63_A Skeletal muscle LIM-pro 39.5 19 0.00066 23.2 2.5 35 3-39 15-52 (82)
27 1iml_A CRIP, cysteine rich int 36.9 20 0.00067 23.0 2.1 32 5-39 2-36 (76)
28 2d8y_A Eplin protein; LIM doma 35.7 24 0.00081 23.6 2.5 35 3-40 15-52 (91)
29 1l8d_A DNA double-strand break 32.9 7.1 0.00024 27.5 -0.6 12 4-15 48-59 (112)
30 1avy_A Fibritin, gpwac M; bact 31.6 18 0.00063 25.8 1.4 16 13-28 49-64 (74)
31 2dj7_A Actin-binding LIM prote 31.6 20 0.00069 23.7 1.5 24 3-29 15-38 (80)
32 1nyp_A Pinch protein; LIM doma 31.0 23 0.00078 22.0 1.7 24 3-30 5-28 (66)
33 2cup_A Skeletal muscle LIM-pro 30.8 33 0.0011 22.9 2.6 25 4-30 67-91 (101)
34 1x4l_A Skeletal muscle LIM-pro 29.3 37 0.0013 21.4 2.5 27 4-30 6-32 (72)
35 1x61_A Thyroid receptor intera 28.9 25 0.00085 22.1 1.6 25 3-29 5-29 (72)
36 1g47_A Pinch protein; LIM doma 28.8 26 0.00091 22.2 1.7 26 3-30 11-36 (77)
37 3tgv_A Heme-binding protein HU 27.6 26 0.0009 25.5 1.7 32 16-47 30-61 (148)
38 1gh9_A 8.3 kDa protein (gene M 26.6 16 0.00053 25.4 0.3 23 2-25 20-42 (71)
39 1x62_A C-terminal LIM domain p 25.3 30 0.001 22.4 1.5 25 2-30 14-38 (79)
40 2ntk_A IMP cyclohydrolase; alp 25.0 30 0.001 29.0 1.8 29 10-38 18-48 (222)
41 1x64_A Alpha-actinin-2 associa 24.9 43 0.0015 22.2 2.2 24 3-30 25-48 (89)
42 1x4k_A Skeletal muscle LIM-pro 24.8 49 0.0017 20.6 2.4 26 3-30 5-30 (72)
43 2cuq_A Four and A half LIM dom 24.6 29 0.001 22.2 1.3 23 4-30 16-38 (80)
44 1wig_A KIAA1808 protein; LIM d 22.9 50 0.0017 21.2 2.2 22 6-29 34-55 (73)
45 2d8z_A Four and A half LIM dom 21.5 54 0.0019 20.4 2.1 33 3-39 5-40 (70)
46 2co8_A NEDD9 interacting prote 21.3 30 0.001 22.8 0.9 34 3-39 15-51 (82)
47 2xjy_A Rhombotin-2; oncoprotei 21.2 65 0.0022 22.4 2.7 24 5-30 68-91 (131)
48 2xqn_T Testin, TESS; metal-bin 20.1 50 0.0017 22.9 1.9 25 4-30 64-88 (126)
No 1
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z 3o58_V 3o5h_V 3u5e_W 3u5i_W 4b6a_W 1s1i_S 2x7n_D
Probab=100.00 E-value=4.6e-47 Score=303.72 Aligned_cols=111 Identities=30% Similarity=0.595 Sum_probs=72.0
Q ss_pred CceeeeecCCCCccCCccceEEeeCCceEEEechhhhhhhhcccCCccchhhHHHHHHhCCcceeeecccchhhhhhHhh
Q 030949 1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQVNMFGFSILFCNLFY 80 (168)
Q Consensus 1 Mkie~CsFcG~kIYPGhG~~fVRnDGkvF~FcsSKC~k~fk~KRNPRKlkWT~~yRr~~KK~~~~~~~~~~~~~~~~~~~ 80 (168)
|++++|+|||++||||||+|||||||++|+||||||+++|++++|||+|+||++||+.|+||++
T Consensus 1 Mk~~~CsFcg~~IyPG~G~~fVr~Dgkvf~FcssKC~k~f~~krnPRkl~WT~~yRr~~kK~~~---------------- 64 (155)
T 3izc_Z 1 MKVEIDSFSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWTVLFRKHHKKGIT---------------- 64 (155)
T ss_dssp CCCEECTTTCSEECTTCCEEEECTTCCEEEESSHHHHHHHHHTCCHHHHSSSCSCCCCCCCCCC----------------
T ss_pred CceeEecCcCCcccCCCCeEEEecCCCEEEEEcHHHHHHHHhccCcccchhHHHHHHHhCCchh----------------
Confidence 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhhhcCccccCCCcccCCchHHHHHhhCCCccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhh
Q 030949 81 LNMFMRISGDLFFSFPFSYRQDSTFEFERKRNRPERYDRNLAENTLKAIKKIDKIRVAREERHHKLRFVI 150 (168)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~d~t~e~ekrrn~~~ky~R~l~~~tl~aik~v~~i~~~r~~~~~~~r~~~ 150 (168)
+|++ ++|+|+|++|||+|||+||++|+++++++..++.++..+++..
T Consensus 65 --------------------~e~~---kkR~~~~vK~~R~ivg~sl~~Ik~~r~~k~e~r~a~r~~aik~ 111 (155)
T 3izc_Z 65 --------------------EEVA---KKRSRKTVKAQRPITGASLDLIKERRSLKPEVRKANREEKLKA 111 (155)
T ss_dssp --------------------CSCC---CCCCC--------------------------------------
T ss_pred --------------------hHHH---HHHhcCCccchHHHHHhhHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence 8988 8999999999999999999999999999999999999988864
No 2
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_T 4a1c_T 4a1e_T
Probab=100.00 E-value=7.2e-44 Score=286.06 Aligned_cols=94 Identities=30% Similarity=0.508 Sum_probs=59.7
Q ss_pred CceeeeecCCCCccCCccceEEeeCCceEEEechhhhhhhhcccCCccchhhHHHHHHhCCcceeeecccchhhhhhHhh
Q 030949 1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQVNMFGFSILFCNLFY 80 (168)
Q Consensus 1 Mkie~CsFcG~kIYPGhG~~fVRnDGkvF~FcsSKC~k~fk~KRNPRKlkWT~~yRr~~KK~~~~~~~~~~~~~~~~~~~ 80 (168)
|++++|+|||++||||||+|||||||++|+||||||+++|++++|||+|+||++||+.|+||++
T Consensus 3 mk~~~CsFcg~~IyPG~G~~fVr~Dgkvf~FcssKC~k~f~~krnPRkl~WT~~yRr~~kK~~~---------------- 66 (158)
T 4a17_T 3 VRTGTCSFCEYRIYPGRGQRFIAKDGRGFFFLTKKAKCLSLRKVKAQKITWTIARRRLWKKVKA---------------- 66 (158)
T ss_dssp CCCEECTTTCCEECTTCCEEEECTTSCEEEESCHHHHHHHHHTCCGGGSTTSHHHHHHHC--------------------
T ss_pred eEEEEecCcCCcccCCCCeEEEeeCCceEEEEcHHHHHHHHcccCcccchhHHHHHHHhCCcch----------------
Confidence 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhhhcCccccCCCcccCCchHHHHHhhCCCccccHHHHHHHHHHHHhHH
Q 030949 81 LNMFMRISGDLFFSFPFSYRQDSTFEFERKRNRPERYDRNLAENTLKAIKKID 133 (168)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~d~t~e~ekrrn~~~ky~R~l~~~tl~aik~v~ 133 (168)
+|++ ++|+|+|++|||+||++||++|++..
T Consensus 67 --------------------~e~~---kkr~~r~vK~~R~ivg~sl~~I~~kR 96 (158)
T 4a17_T 67 --------------------TDIA---QKKKKRNVTVARAIVGISLEEINRRK 96 (158)
T ss_dssp -----------------------------------------------------
T ss_pred --------------------HHHH---HHHhcCCcccchhhhhhhHHHHHHHH
Confidence 8888 89999999999999999999998763
No 3
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=1e-43 Score=284.74 Aligned_cols=92 Identities=39% Similarity=0.819 Sum_probs=53.0
Q ss_pred CceeeeecCCCCccCCccceEEeeCCceEEEechhhhhhhhcccCCccchhhHHHHHHhCCcceeeecccchhhhhhHhh
Q 030949 1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQVNMFGFSILFCNLFY 80 (168)
Q Consensus 1 Mkie~CsFcG~kIYPGhG~~fVRnDGkvF~FcsSKC~k~fk~KRNPRKlkWT~~yRr~~KK~~~~~~~~~~~~~~~~~~~ 80 (168)
|++++|+|||++||||||+|||||||++|+||||||+++|++++|||+|+||++||+.|||+++
T Consensus 1 Mk~~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~FcssKC~k~f~~krnPRKl~WT~~yRr~~kK~~~---------------- 64 (157)
T 2zkr_u 1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQS---------------- 64 (157)
T ss_dssp ---CBCTTTCCBCCTTCCEEEECTTSCEEEESSHHHHHHHHTTCCTTTCTTCSTTC------------------------
T ss_pred CCeeeecCcCCcccCCCceEEEeeCCcEEEEecHHHHHHHHccCCcccchhHHHHHHHhcchHH----------------
Confidence 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhhhcCccccCCCcccCCchHHHHHhhC-CCccccHHHHHHHHHHHHhH
Q 030949 81 LNMFMRISGDLFFSFPFSYRQDSTFEFERKRN-RPERYDRNLAENTLKAIKKI 132 (168)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~d~t~e~ekrrn-~~~ky~R~l~~~tl~aik~v 132 (168)
+ ||+++|+ +|++|||+|||+||++|++.
T Consensus 65 --------------------~----e~~KkR~r~~vK~~R~ivg~sl~~I~~k 93 (157)
T 2zkr_u 65 --------------------E----EIQKKRTRRAVKFQRAITGASLADIMAK 93 (157)
T ss_dssp -----------------------------------------------------
T ss_pred --------------------H----HHHHHHhcCccceeHHHHHhhHHHHHHH
Confidence 4 6788886 89999999999999999885
No 4
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Z
Probab=100.00 E-value=8.7e-44 Score=286.55 Aligned_cols=95 Identities=36% Similarity=0.785 Sum_probs=71.3
Q ss_pred CceeeeecCCCCccCCccceEEeeCCceEEEechhhhhhhhcccCCccchhhHHHHHHhCCcceeeecccchhhhhhHhh
Q 030949 1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQVNMFGFSILFCNLFY 80 (168)
Q Consensus 1 Mkie~CsFcG~kIYPGhG~~fVRnDGkvF~FcsSKC~k~fk~KRNPRKlkWT~~yRr~~KK~~~~~~~~~~~~~~~~~~~ 80 (168)
|++++|+|||++||||||+|||||||++|+||||||+++|++++|||+|+||++||+.|+|+++
T Consensus 3 mk~e~CsFcG~~IyPG~G~~fVr~Dgkvf~FcssKC~k~f~~krnPRKl~WT~~yRr~~kK~~~---------------- 66 (162)
T 3iz5_Z 3 LKTELCRFSGQKIYPGKGIRFIRADSQVFLFANSKCKRYFHNRLKPAKLTWTAMYRKQHKKDIH---------------- 66 (162)
T ss_dssp SSCEECTTTCSEECSSCSEEEECTTSCEEEECSHHHHHHHHHTCCGGGTSSSCSCCCCCCCCCC----------------
T ss_pred eEEEEecCcCCcccCCCCeEEEecCCCEEEEECHHHHHHHHcccCcccchhHHHHHHHhccchh----------------
Confidence 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhhhcCccccCCCcccCCchHHHHHhhCCCccccHHHHHHHHHHHHhHH
Q 030949 81 LNMFMRISGDLFFSFPFSYRQDSTFEFERKRNRPERYDRNLAENTLKAIKKID 133 (168)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~d~t~e~ekrrn~~~ky~R~l~~~tl~aik~v~ 133 (168)
+|++ ++++||+|++|||+||++||++|++..
T Consensus 67 --------------------~e~~--~krrR~~~~k~qRaivg~sL~~I~~kR 97 (162)
T 3iz5_Z 67 --------------------AEAV--KKRRRTTKKPYSRSIVGATLEVIQKKR 97 (162)
T ss_dssp --------------------SSSS--SSSCC----------------------
T ss_pred --------------------hHHH--HHHHhcCCccccHHHHHhhHHHHHHHH
Confidence 8988 689999999999999999999998763
No 5
>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ...
Probab=100.00 E-value=5.7e-38 Score=221.34 Aligned_cols=64 Identities=33% Similarity=0.713 Sum_probs=53.0
Q ss_pred CceeeeecCCCCccCCccceEEeeCCceEEEechhhhhhhhcccCCccchhhHHHHHHhCCcce
Q 030949 1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMT 64 (168)
Q Consensus 1 Mkie~CsFcG~kIYPGhG~~fVRnDGkvF~FcsSKC~k~fk~KRNPRKlkWT~~yRr~~KK~~~ 64 (168)
|++++|+|||++||||||+||||+||++|+||||||+++|++|||||||+||++||++||||++
T Consensus 1 mk~~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~FcssKc~k~f~~krnPRkl~WT~~yRr~~kK~~~ 64 (66)
T 1vq8_U 1 PRTRECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTARGEAGEAED 64 (66)
T ss_dssp ---CBCTTTCCBCCSSCCEEEECTTSCEEEESCHHHHHHHHTTCCGGGCTTSTTTC--------
T ss_pred CCeeEecCcCCcccCCCceEEEeeCCcEEEEECHHHHHHHHcccCcccchhHHHHHHHhccccc
Confidence 8999999999999999999999999999999999999999999999999999999999999986
No 6
>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=8.8e-35 Score=205.08 Aligned_cols=59 Identities=44% Similarity=0.956 Sum_probs=57.5
Q ss_pred CceeeeecCCCCccCCccceEEeeCCceEEEechhhhhhhhcccCCccchhhHHHHHHh
Q 030949 1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLH 59 (168)
Q Consensus 1 Mkie~CsFcG~kIYPGhG~~fVRnDGkvF~FcsSKC~k~fk~KRNPRKlkWT~~yRr~~ 59 (168)
|++++|+|||++||||||++||||||++|+||||||+++|++|||||||+||++||+..
T Consensus 2 ~~~~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~FcssKC~k~f~~krnPRkl~WT~~yRk~~ 60 (66)
T 3j21_V 2 ARWNVCSYCGKPFEPGTGKMYVRNDGRVLFFCSRKCERYYFMGRNPRKLKWTKAYQEAR 60 (66)
T ss_dssp CCCCBCTTTCSBCCTTCCEEEECSSSCEEEESSHHHHHHHHTTCCTTTCSSSHHHHHHH
T ss_pred CceeEecCcCCcccCCCCeEEEecCCcEEEEECHHHHHHHHcCCCcccchHHHHHHHHh
Confidence 68999999999999999999999999999999999999999999999999999999964
No 7
>3jyw_S 60S ribosomal protein L24(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=99.95 E-value=2.2e-29 Score=166.29 Aligned_cols=45 Identities=51% Similarity=1.025 Sum_probs=44.7
Q ss_pred cCCCCccCCccceEEeeCCceEEEechhhhhhhhcccCCccchhh
Q 030949 8 FCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWT 52 (168)
Q Consensus 8 FcG~kIYPGhG~~fVRnDGkvF~FcsSKC~k~fk~KRNPRKlkWT 52 (168)
|||++||||||+||||+||++|+||||||+++|++|||||||+||
T Consensus 1 F~g~~IyPG~G~~~Vr~Dgkvf~FcssKc~k~~~~krnPrkl~WT 45 (45)
T 3jyw_S 1 FSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWT 45 (45)
T ss_dssp CCCCCCCTTCCCEECTTTSCCCCCCSHHHHGGGTSCCCTTTCCCC
T ss_pred CCCCcccCCCCeEEEecCCCEEEEECHHHHHHHHcCCCCccCccC
Confidence 899999999999999999999999999999999999999999998
No 8
>2hpu_A NOSL protein; alpha beta topology, metal transport; NMR {Achromobacter cycloclastes} SCOP: d.357.1.1 PDB: 2hq3_A
Probab=91.41 E-value=0.093 Score=41.67 Aligned_cols=41 Identities=12% Similarity=0.242 Sum_probs=19.6
Q ss_pred eeeeecCCCCc--cCCc-cceEEeeCCceEEEechhhhhhhhcc
Q 030949 3 LEKCWFCSSTV--YPGH-GIQFVRNDAKIFRFCRSKCHKNFKMK 43 (168)
Q Consensus 3 ie~CsFcG~kI--YPGh-G~~fVRnDGkvF~FcsSKC~k~fk~K 43 (168)
...|.+||-.| |||. |.++..+.|++++||+-+|--.|.+.
T Consensus 18 ~~~C~~CgM~i~~~p~~~aqI~~~~~g~~~~F~s~~cm~~~~~~ 61 (175)
T 2hpu_A 18 ETLGHYCQMNLLEHPGPKAQIFLEGSPAPLFFSQVRDAIAYARG 61 (175)
T ss_dssp -----------------CEEEEETTCSSEEEESCHHHHHHHHTT
T ss_pred CceeCCCCcCcccCCCccEEEEECCCCcEEEECCHHHHHHHHhc
Confidence 46899999998 3565 45555544999999999998877643
No 9
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=85.96 E-value=0.15 Score=33.60 Aligned_cols=30 Identities=27% Similarity=0.551 Sum_probs=23.9
Q ss_pred eeeecCCCCccCCccceEEeeCCceEEEechhhhhhh
Q 030949 4 EKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNF 40 (168)
Q Consensus 4 e~CsFcG~kIYPGhG~~fVRnDGkvF~FcsSKC~k~f 40 (168)
..|.+||.+|.|.++ ++.=+|||..|++.|
T Consensus 19 ~~C~~CG~~i~~~~~-------~r~krFCS~sCR~~y 48 (49)
T 2l8e_A 19 LKCEYCGKYAPAEQF-------RGSKRFCSMTCAKRY 48 (49)
T ss_dssp EECTTTCCEEEGGGC-------TTTSSSCSHHHHHHH
T ss_pred CcChhccCccccccC-------CCCCccCCHHHHhhh
Confidence 579999999999764 333469999999876
No 10
>1mty_D Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} SCOP: a.25.1.2 PDB: 1mmo_D 1xvb_A 1fyz_A 1fz0_A 1fz2_A 1fz3_A 1fz4_A 1fz5_A 1fz6_A 1fz7_A 1fz8_A 1fz9_A 1fzh_A 1fzi_A 1xmf_A 1xmg_A 1xmh_A 1xu3_A 1xu5_A 1fz1_A ...
Probab=84.46 E-value=0.56 Score=42.98 Aligned_cols=55 Identities=9% Similarity=0.183 Sum_probs=42.3
Q ss_pred eeeecCCCCc----cCCccceEE-eeCCceEEEechhhhhhhhcccCCccc----hhhHHHHHHhCCcce
Q 030949 4 EKCWFCSSTV----YPGHGIQFV-RNDAKIFRFCRSKCHKNFKMKRNPRKV----KWTKAYRRLHGKDMT 64 (168)
Q Consensus 4 e~CsFcG~kI----YPGhG~~fV-RnDGkvF~FcsSKC~k~fk~KRNPRKl----kWT~~yRr~~KK~~~ 64 (168)
..|.-|+-++ .||....++ --+|+.++|||.-|+.-|. +||-+- .|+ | .+|-++.
T Consensus 402 ~~c~vC~~p~~~~~~~~~~~~~~~~y~G~~y~FCs~~Ck~~F~--~~PerY~~~~~~~---~-~~G~~l~ 465 (512)
T 1mty_D 402 YIDRVSQVPFCPSLAKGASTLRVHEYNGEMHTFSDQWGERMWL--AEPERYECQNIFE---Q-YEGRELS 465 (512)
T ss_dssp EECTTTCCEECTTTCSSCCCCEEEEETTEEEEESSHHHHHHHH--HCGGGCCCCCHHH---H-STTCBHH
T ss_pred eeCCCCCCcccccCCCCCCceeEEEECCEEEEecCHHHHHHHH--hChHHhhhcchHH---H-hcCCCHH
Confidence 3699999984 557776665 5799999999999999997 688775 566 4 6664443
No 11
>3u52_A Phenol hydroxylase component PHN; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_A 2inp_A
Probab=73.25 E-value=1.9 Score=39.39 Aligned_cols=55 Identities=20% Similarity=0.527 Sum_probs=41.4
Q ss_pred eeecCCCCc---cCCccc----eEEeeCCceEEEechhhhhhhhcccCCccc--hhhHHHHHHhCC
Q 030949 5 KCWFCSSTV---YPGHGI----QFVRNDAKIFRFCRSKCHKNFKMKRNPRKV--KWTKAYRRLHGK 61 (168)
Q Consensus 5 ~CsFcG~kI---YPGhG~----~fVRnDGkvF~FcsSKC~k~fk~KRNPRKl--kWT~~yRr~~KK 61 (168)
.|.-|.-|+ .||... .-+--+|+.++|||.-|+.-|. +||-+. .|+..-|-..|-
T Consensus 398 ~C~~Cq~P~~~~~~~~~~~~~~~~~~~~G~~y~fCs~~C~~~f~--~~Pe~y~~~~~~~~~~~~g~ 461 (511)
T 3u52_A 398 LCQVCQIPTIFTEKDAPTMLSHRQIEHEGERYHFCSDGCCDIFK--HEPEKYIQAWLPVHQIYQGN 461 (511)
T ss_dssp BCTTTCSBSCCEETTEEEEECCEEEEETTEEEEESSHHHHHHHH--HCHHHHTTCCCHHHHHHTTC
T ss_pred ccCCCCCcccccCCCCCCcccceeEEECCEEEEecChHHHHHHH--HCHHHHhcccChHHHHHccC
Confidence 699999999 566543 2233589999999999999997 678765 577776666553
No 12
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=59.80 E-value=2.5 Score=24.47 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=17.5
Q ss_pred eeeeecCCCCccCCccceEEeeCCceE
Q 030949 3 LEKCWFCSSTVYPGHGIQFVRNDAKIF 29 (168)
Q Consensus 3 ie~CsFcG~kIYPGhG~~fVRnDGkvF 29 (168)
.++|..||..+||+.-.+ .+|+++
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~---~~g~~~ 26 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVN---CLDKFW 26 (31)
T ss_dssp CCBCSSSCSBCCGGGCCC---SSSSCC
T ss_pred CCcCCccCCEEecceeEE---ECCeEe
Confidence 468999999999995443 356544
No 13
>3ge3_A Toluene-4-monooxygenase system protein A; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: a.25.1.2 PDB: 3ge8_A 3dhi_A* 3dhh_A* 3dhg_A* 3i5j_A 3i63_A 3q14_A 3q2a_A* 3q3m_A* 3q3n_A* 3q3o_A* 3rmk_A* 3ri7_A
Probab=59.30 E-value=6.5 Score=36.00 Aligned_cols=69 Identities=17% Similarity=0.263 Sum_probs=46.3
Q ss_pred eeecCCCCcc--CCccc---e-EEeeCCceEEEechhhhhhhhcccCCccch--hhHHHHHHhCCcceeeecccchhhhh
Q 030949 5 KCWFCSSTVY--PGHGI---Q-FVRNDAKIFRFCRSKCHKNFKMKRNPRKVK--WTKAYRRLHGKDMTQVNMFGFSILFC 76 (168)
Q Consensus 5 ~CsFcG~kIY--PGhG~---~-fVRnDGkvF~FcsSKC~k~fk~KRNPRKlk--WT~~yRr~~KK~~~~~~~~~~~~~~~ 76 (168)
.|.-|.-|+- ||+.. . -+--+|+.++|||.-|+..|. +||-+.. |+..-|-..|.- ++.-|..
T Consensus 396 ~C~~CqvP~~~~~~~~~~~~~~~~~y~G~~y~fCs~~C~~~f~--~~Pe~y~~~~~~~~~~~~g~~-------~~~~~~~ 466 (500)
T 3ge3_A 396 VCNMSQIPLVGVPGDDWNIEVFSLEHNGRLYHFGSEVDRWVFQ--QDPVQYQNHMNIVDRFLAGQI-------QPMTLEG 466 (500)
T ss_dssp BCTTTCSBCBCBCGGGCBCCCEEEEETTEEEEESSHHHHHHHH--HCHHHHTTCCCHHHHHHTTCS-------SSSSHHH
T ss_pred cccccCCccccCCCCcccccceeeEECCEEEEecCHHHHHHHH--hChHHHhCCCCHHHHHHccCC-------CCCCHHH
Confidence 6888888874 45321 2 233589999999999999997 7888763 776666555532 2233556
Q ss_pred hHhhhh
Q 030949 77 NLFYLN 82 (168)
Q Consensus 77 ~~~~~~ 82 (168)
.+-|.+
T Consensus 467 ~l~~~~ 472 (500)
T 3ge3_A 467 ALKYMG 472 (500)
T ss_dssp HHHHTT
T ss_pred HHHHcC
Confidence 666654
No 14
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=58.72 E-value=4.7 Score=25.55 Aligned_cols=35 Identities=26% Similarity=0.359 Sum_probs=25.8
Q ss_pred eeeecCCCCccCCccceEEeeCCceEE-----Eechhhhhhh
Q 030949 4 EKCWFCSSTVYPGHGIQFVRNDAKIFR-----FCRSKCHKNF 40 (168)
Q Consensus 4 e~CsFcG~kIYPGhG~~fVRnDGkvF~-----FcsSKC~k~f 40 (168)
..|.-|+.+|+|+. ..|.-.|+.+. |.=+.|.+.+
T Consensus 3 ~~C~~C~~~I~~~~--~~v~a~~~~wH~~~~CF~C~~C~~~L 42 (65)
T 2iyb_E 3 VVCQGCHNAIDPEV--QRVTYNNFSWHASTECFLCSCCSKCL 42 (65)
T ss_dssp EECTTTSSEECTTS--CEEEETTEEEETTTTTSBCTTTCCBC
T ss_pred CCCcCCCCeeccCc--eEEEECCCccCCCCCCEECCCCCCcC
Confidence 57999999999862 25667788888 7667776554
No 15
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=54.55 E-value=9.2 Score=24.95 Aligned_cols=35 Identities=37% Similarity=0.613 Sum_probs=25.5
Q ss_pred eeeeecCCCCccCCccceEEeeCCceEE---Eechhhhhhh
Q 030949 3 LEKCWFCSSTVYPGHGIQFVRNDAKIFR---FCRSKCHKNF 40 (168)
Q Consensus 3 ie~CsFcG~kIYPGhG~~fVRnDGkvF~---FcsSKC~k~f 40 (168)
...|.-|+.+|+||. .|.-+|+.+. |.=+.|.+.+
T Consensus 7 ~~~C~~C~~~I~~~~---~~~a~~~~~H~~CF~C~~C~~~L 44 (81)
T 1a7i_A 7 GNKCGACGRTVYHAE---EVQCDGRSFHRCCFLCMVCRKNL 44 (81)
T ss_dssp -CBCSSSCCBCSSTT---EEEETTEEEESSSEECSSSCCEE
T ss_pred CCcCcCcCccccCce---eEEeCCcccccccCccCCCCCCC
Confidence 367999999999987 4677888876 5555665544
No 16
>2ww6_A Fibritin, T4 fibritin; D-amino acids, chaperone, viral protein; HET: DPN PG4; 0.98A {Enterobacteria phage T4} PDB: 1rfo_A 1u0p_A 2kbl_A 2ww7_A*
Probab=52.80 E-value=7 Score=23.30 Aligned_cols=15 Identities=20% Similarity=0.282 Sum_probs=12.6
Q ss_pred cCCccceEEeeCCce
Q 030949 14 YPGHGIQFVRNDAKI 28 (168)
Q Consensus 14 YPGhG~~fVRnDGkv 28 (168)
-|--|.-|||.||.-
T Consensus 6 AP~Dg~~Yvr~dg~W 20 (27)
T 2ww6_A 6 APRDAQAYVRKFGEW 20 (27)
T ss_dssp CCSSSCEEEEETTEE
T ss_pred CCcCcceeEEEcCeE
Confidence 477899999999963
No 17
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=48.75 E-value=13 Score=23.74 Aligned_cols=28 Identities=21% Similarity=0.464 Sum_probs=21.8
Q ss_pred eeeeecCCCCccC-CccceEEeeCCceEE
Q 030949 3 LEKCWFCSSTVYP-GHGIQFVRNDAKIFR 30 (168)
Q Consensus 3 ie~CsFcG~kIYP-GhG~~fVRnDGkvF~ 30 (168)
...|+-|+.+|+| |.+...|...|+.+.
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a~~~~~H 43 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAYEGQSWH 43 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEETTEEEE
T ss_pred CccCcccCCcccCCCCCceeEEECcceeC
Confidence 3579999999997 335677888888775
No 18
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.73 E-value=12 Score=24.05 Aligned_cols=34 Identities=29% Similarity=0.433 Sum_probs=24.0
Q ss_pred eeeeecCCCCccCCccceEEeeCCceEE---Eechhhhhh
Q 030949 3 LEKCWFCSSTVYPGHGIQFVRNDAKIFR---FCRSKCHKN 39 (168)
Q Consensus 3 ie~CsFcG~kIYPGhG~~fVRnDGkvF~---FcsSKC~k~ 39 (168)
...|.-|+.+|+||. +|.-+|+.+. |.=+.|.+.
T Consensus 9 ~~~C~~C~~~I~~~~---~v~a~~~~~H~~CF~C~~C~~~ 45 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAE---KVSSLGKDWHKFCLKCERCSKT 45 (76)
T ss_dssp CCBCTTTCCBCCTTT---EEEETTEEEETTTCBCSSSCCB
T ss_pred CCCCcCCCCEeECCe---EEEECCeEeeCCCCCCCCCCCc
Confidence 357999999999986 4567788776 444455444
No 19
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.02 E-value=13 Score=23.97 Aligned_cols=36 Identities=22% Similarity=0.447 Sum_probs=24.2
Q ss_pred eeeeecCCCCccC-CccceEEeeCCceEE---Eechhhhhh
Q 030949 3 LEKCWFCSSTVYP-GHGIQFVRNDAKIFR---FCRSKCHKN 39 (168)
Q Consensus 3 ie~CsFcG~kIYP-GhG~~fVRnDGkvF~---FcsSKC~k~ 39 (168)
...|.-|+.+|++ | ...+|.-.|+.+. |.=+.|.+.
T Consensus 5 ~~~C~~C~~~I~~~g-~~~~~~a~~~~wH~~CF~C~~C~~~ 44 (76)
T 1x68_A 5 SSGCVACSKPISGLT-GAKFICFQDSQWHSECFNCGKCSVS 44 (76)
T ss_dssp CCCCTTTCCCCCTTT-TCCEEEETTEEEEGGGCBCTTTCCB
T ss_pred CCCCccCCCcccCCC-CceeEEECCcccCcccCChhhCCCc
Confidence 4679999999997 4 3345777788776 444455443
No 20
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=45.36 E-value=6.1 Score=25.94 Aligned_cols=10 Identities=40% Similarity=0.926 Sum_probs=7.7
Q ss_pred eeeeecCCCC
Q 030949 3 LEKCWFCSST 12 (168)
Q Consensus 3 ie~CsFcG~k 12 (168)
...|||||..
T Consensus 11 ~~~CSFCGk~ 20 (51)
T 2ds5_A 11 LLYCSFCGKS 20 (51)
T ss_dssp CCBCTTTCCB
T ss_pred CcEecCCCCC
Confidence 3579999973
No 21
>2inc_A Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: a.25.1.2 PDB: 2ind_A* 1t0q_A 1t0r_A 1t0s_A 3n1z_A* 3rnf_A* 3n20_A* 3rnc_A 3rn9_A* 3n1x_A 3rne_A 2rdb_A* 3n1y_A* 3rnb_A 3rng_A 3rna_A
Probab=44.75 E-value=8 Score=35.03 Aligned_cols=54 Identities=19% Similarity=0.428 Sum_probs=38.2
Q ss_pred eeecCCCCcc--CCccc---eEE-eeCCceEEEechhhhhhhhcccCCccc--hhhHHHHHHhC
Q 030949 5 KCWFCSSTVY--PGHGI---QFV-RNDAKIFRFCRSKCHKNFKMKRNPRKV--KWTKAYRRLHG 60 (168)
Q Consensus 5 ~CsFcG~kIY--PGhG~---~fV-RnDGkvF~FcsSKC~k~fk~KRNPRKl--kWT~~yRr~~K 60 (168)
.|.-|.-|+- ||.+. .++ --+|+.+.|||.-|+.-|. .||-+. .|+..-|-.+|
T Consensus 395 ~c~~cq~P~~~~~~~~~~~~~~~~~~~G~~y~fcs~~c~~~F~--~~Pery~~~~~~~~~~~~g 456 (491)
T 2inc_A 395 ICNMCNLPIAHTPGNKWNVKDYQLEYEGRLYHFGSEADRWCFQ--IDPERYKNHTNLVDRFLKG 456 (491)
T ss_dssp BCTTTCSBCBCCCGGGCCCCCCCEEETTEEECCSSHHHHHHHH--HSGGGTTTCCCHHHHHHTT
T ss_pred ccCCCCCccCcCCCCccccceeEEEECCEEEeecCHHHHHHHH--HCHHHHhcccchhhHHhcC
Confidence 5877776443 56655 443 5699999999999999997 677663 46655555555
No 22
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=44.32 E-value=5.7 Score=27.69 Aligned_cols=22 Identities=18% Similarity=0.421 Sum_probs=12.4
Q ss_pred eeeeecCCCCccCCccceEEeeCC
Q 030949 3 LEKCWFCSSTVYPGHGIQFVRNDA 26 (168)
Q Consensus 3 ie~CsFcG~kIYPGhG~~fVRnDG 26 (168)
...|||||.. ...-..+|..+|
T Consensus 18 ~~~CSFCGK~--e~eV~~LIaGpg 39 (67)
T 1ovx_A 18 LLYCSFCGKS--QHEVRKLIAGPS 39 (67)
T ss_dssp CCCCTTTCCC--TTTSSSEEECSS
T ss_pred CcEecCCCCC--HHHHcccCCCCC
Confidence 4579999974 223334444443
No 23
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=43.86 E-value=18 Score=22.47 Aligned_cols=26 Identities=15% Similarity=0.465 Sum_probs=19.8
Q ss_pred eeeeecCCCCccCCccceEEeeCCceEE
Q 030949 3 LEKCWFCSSTVYPGHGIQFVRNDAKIFR 30 (168)
Q Consensus 3 ie~CsFcG~kIYPGhG~~fVRnDGkvF~ 30 (168)
...|.-|+.+|+|+.. .|+.+|+.+.
T Consensus 11 ~~~C~~C~~~i~~~e~--~~~~~~~~~H 36 (72)
T 3f6q_B 11 SATCERCKGGFAPAEK--IVNSNGELYH 36 (72)
T ss_dssp TCBCTTTCCBCCTTCE--EEEETTEEEE
T ss_pred CccchhcCccccCCce--EEEeCcCeeC
Confidence 3579999999998753 4567788775
No 24
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.74 E-value=16 Score=23.00 Aligned_cols=36 Identities=25% Similarity=0.540 Sum_probs=24.0
Q ss_pred eeeeecCCCCccCCccceEEeeCCceEE---Eechhhhhhh
Q 030949 3 LEKCWFCSSTVYPGHGIQFVRNDAKIFR---FCRSKCHKNF 40 (168)
Q Consensus 3 ie~CsFcG~kIYPGhG~~fVRnDGkvF~---FcsSKC~k~f 40 (168)
...|.-|+.+|+|+. ..|+-+|+.+. |.=+.|.+.+
T Consensus 5 ~~~C~~C~~~I~~~~--~~~~a~~~~~H~~CF~C~~C~~~L 43 (72)
T 1wyh_A 5 SSGCSACGETVMPGS--RKLEYGGQTWHEHCFLCSGCEQPL 43 (72)
T ss_dssp CCBCSSSCCBCCSSS--CEECSTTCCEETTTCBCTTTCCBT
T ss_pred CCCCccCCCccccCc--cEEEECccccCcccCeECCCCCcC
Confidence 467999999999852 45666777776 4444555443
No 25
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=39.80 E-value=16 Score=25.33 Aligned_cols=38 Identities=18% Similarity=0.453 Sum_probs=33.2
Q ss_pred eeecCCCCccCCccceEEeeCCceEEEechhhhhhhhccc
Q 030949 5 KCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKR 44 (168)
Q Consensus 5 ~CsFcG~kIYPGhG~~fVRnDGkvF~FcsSKC~k~fk~KR 44 (168)
.|+=|-..+.. |..=++..|.+-.||+.-|-..|..|.
T Consensus 22 ~C~~CKk~lqK--GQtAyqrkGs~~LFCS~~CL~~fs~~~ 59 (62)
T 2das_A 22 TCANCKKPLQK--GQTAYQRKGSAHLFCSTTCLSSFSSGP 59 (62)
T ss_dssp BCTTTCCBCCT--TSCCEECTTCCCEESSHHHHHHHCCCS
T ss_pred Chhhccchhhc--CceeeeecCchhheechHHHcccCCCC
Confidence 58888888876 889999999999999999999987664
No 26
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.51 E-value=19 Score=23.24 Aligned_cols=35 Identities=26% Similarity=0.489 Sum_probs=23.4
Q ss_pred eeeeecCCCCccCCccceEEeeCCceEE---Eechhhhhh
Q 030949 3 LEKCWFCSSTVYPGHGIQFVRNDAKIFR---FCRSKCHKN 39 (168)
Q Consensus 3 ie~CsFcG~kIYPGhG~~fVRnDGkvF~---FcsSKC~k~ 39 (168)
...|.-|+.+|+|+. .+|...|+.+. |.=+.|.+.
T Consensus 15 ~~~C~~C~~~I~~~~--~~~~a~~~~~H~~CF~C~~C~~~ 52 (82)
T 1x63_A 15 SPKCKGCFKAIVAGD--QNVEYKGTVWHKDCFTCSNCKQV 52 (82)
T ss_dssp SCBCSSSCCBCCSSS--CEEECSSCEEETTTCCCSSSCCC
T ss_pred CCcCccCCcccccCc--eEEEECccccccccCchhhCCCc
Confidence 357999999999863 45677777775 333445443
No 27
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=36.85 E-value=20 Score=23.02 Aligned_cols=32 Identities=31% Similarity=0.437 Sum_probs=20.8
Q ss_pred eeecCCCCccCCccceEEeeCCceEE---Eechhhhhh
Q 030949 5 KCWFCSSTVYPGHGIQFVRNDAKIFR---FCRSKCHKN 39 (168)
Q Consensus 5 ~CsFcG~kIYPGhG~~fVRnDGkvF~---FcsSKC~k~ 39 (168)
.|.-|+.+|++|. +|...|+.+. |.=+.|.+.
T Consensus 2 ~C~~C~~~I~~~~---~v~a~~~~~H~~CF~C~~C~~~ 36 (76)
T 1iml_A 2 KCPKCDKEVYFAE---RVTSLGKDWHRPCLKCEKCGKT 36 (76)
T ss_dssp BCTTTSSBCCGGG---EEEETTEEEETTTCBCTTTCCB
T ss_pred cCCCCCCEEECce---EEEECCccccCCCCCccccCcc
Confidence 5888999998875 3566677765 333445443
No 28
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.70 E-value=24 Score=23.56 Aligned_cols=35 Identities=31% Similarity=0.627 Sum_probs=26.1
Q ss_pred eeeeecCCCCccCCccceEEeeCCceEE---Eechhhhhhh
Q 030949 3 LEKCWFCSSTVYPGHGIQFVRNDAKIFR---FCRSKCHKNF 40 (168)
Q Consensus 3 ie~CsFcG~kIYPGhG~~fVRnDGkvF~---FcsSKC~k~f 40 (168)
...|.-|+..|+++. +|..+|+.+. |.=+.|.+.+
T Consensus 15 ~~~C~~C~~~I~~~~---~v~a~~~~~H~~CF~C~~C~~~L 52 (91)
T 2d8y_A 15 RETCVECQKTVYPME---RLLANQQVFHISCFRCSYCNNKL 52 (91)
T ss_dssp SCBCTTTCCBCCTTS---EEECSSSEEETTTCBCTTTCCBC
T ss_pred CCcCccCCCccCCce---eEEECCCEECCCCCeeCCCCCCC
Confidence 457999999999875 4678888887 5555665544
No 29
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=32.90 E-value=7.1 Score=27.45 Aligned_cols=12 Identities=25% Similarity=0.551 Sum_probs=10.4
Q ss_pred eeeecCCCCccC
Q 030949 4 EKCWFCSSTVYP 15 (168)
Q Consensus 4 e~CsFcG~kIYP 15 (168)
+.|..||+++.|
T Consensus 48 ~~CPvCgs~l~~ 59 (112)
T 1l8d_A 48 GKCPVCGRELTD 59 (112)
T ss_dssp EECTTTCCEECH
T ss_pred CCCCCCCCcCCH
Confidence 579999999987
No 30
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=31.57 E-value=18 Score=25.82 Aligned_cols=16 Identities=31% Similarity=0.542 Sum_probs=13.3
Q ss_pred ccCCccceEEeeCCce
Q 030949 13 VYPGHGIQFVRNDAKI 28 (168)
Q Consensus 13 IYPGhG~~fVRnDGkv 28 (168)
.-|--|..|||.||.-
T Consensus 49 ~AP~DG~~YVrkDgaW 64 (74)
T 1avy_A 49 EAPRDGQAYVRKDGEW 64 (74)
T ss_dssp CCCCSSCCEEEETTEE
T ss_pred CCCCCCceeEEecCee
Confidence 4578899999999963
No 31
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.55 E-value=20 Score=23.71 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=17.8
Q ss_pred eeeeecCCCCccCCccceEEeeCCceE
Q 030949 3 LEKCWFCSSTVYPGHGIQFVRNDAKIF 29 (168)
Q Consensus 3 ie~CsFcG~kIYPGhG~~fVRnDGkvF 29 (168)
...|.-|+.+|++|. +|...|+.+
T Consensus 15 ~~~C~~C~~~I~~~~---~v~a~~~~w 38 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQ---SLLALDKQW 38 (80)
T ss_dssp CSCCTTTCCCCSSSC---CEEETTEEE
T ss_pred CCCCcCcCCeeCCCe---EEEECCccc
Confidence 457999999999875 355566665
No 32
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=31.03 E-value=23 Score=22.00 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=17.6
Q ss_pred eeeeecCCCCccCCccceEEeeCCceEE
Q 030949 3 LEKCWFCSSTVYPGHGIQFVRNDAKIFR 30 (168)
Q Consensus 3 ie~CsFcG~kIYPGhG~~fVRnDGkvF~ 30 (168)
...|+-|+.+|+ |. +|.-.|+.+.
T Consensus 5 ~~~C~~C~~~I~-~~---~~~a~~~~~H 28 (66)
T 1nyp_A 5 VPICGACRRPIE-GR---VVNAMGKQWH 28 (66)
T ss_dssp CCEETTTTEECC-SC---EECCTTSBEE
T ss_pred CCCCcccCCEec-ce---EEEECccccc
Confidence 467899999998 42 5677777665
No 33
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=30.78 E-value=33 Score=22.87 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=18.0
Q ss_pred eeeecCCCCccCCccceEEeeCCceEE
Q 030949 4 EKCWFCSSTVYPGHGIQFVRNDAKIFR 30 (168)
Q Consensus 4 e~CsFcG~kIYPGhG~~fVRnDGkvF~ 30 (168)
.+|.-|+.+|.||. ..|+-.|+.|.
T Consensus 67 ~~C~~C~~~I~~~~--~~~~a~~~~~H 91 (101)
T 2cup_A 67 PKCKGCFKAIVAGD--QNVEYKGTVWH 91 (101)
T ss_dssp CBCSSSCCBCCSSS--CEEESSSCEEE
T ss_pred CccccCCCccccCC--eEEEeCCcchH
Confidence 47899999999874 35566666664
No 34
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.25 E-value=37 Score=21.37 Aligned_cols=27 Identities=11% Similarity=0.368 Sum_probs=16.0
Q ss_pred eeeecCCCCccCCccceEEeeCCceEE
Q 030949 4 EKCWFCSSTVYPGHGIQFVRNDAKIFR 30 (168)
Q Consensus 4 e~CsFcG~kIYPGhG~~fVRnDGkvF~ 30 (168)
..|.-|+.+|++..+..+|.-.|+.+.
T Consensus 6 ~~C~~C~~~I~~~~~~~~~~a~~~~wH 32 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYISFEERQWH 32 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCEECSSCEEC
T ss_pred CCCcCCCccccCCCCcceEEECCcccC
Confidence 568888888886223334555555554
No 35
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.86 E-value=25 Score=22.14 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=16.0
Q ss_pred eeeeecCCCCccCCccceEEeeCCceE
Q 030949 3 LEKCWFCSSTVYPGHGIQFVRNDAKIF 29 (168)
Q Consensus 3 ie~CsFcG~kIYPGhG~~fVRnDGkvF 29 (168)
...|.-|+.+|+|+ ...|..+|+.+
T Consensus 5 ~~~C~~C~~~I~~~--~~~~~a~~~~~ 29 (72)
T 1x61_A 5 SSGCGGCGEDVVGD--GAGVVALDRVF 29 (72)
T ss_dssp CCCCSSSCSCCCSS--SCCEECSSSEE
T ss_pred CCCCccCCCccCCC--ceEEEECCCeE
Confidence 45788899999873 23344455554
No 36
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.77 E-value=26 Score=22.21 Aligned_cols=26 Identities=15% Similarity=0.465 Sum_probs=16.9
Q ss_pred eeeeecCCCCccCCccceEEeeCCceEE
Q 030949 3 LEKCWFCSSTVYPGHGIQFVRNDAKIFR 30 (168)
Q Consensus 3 ie~CsFcG~kIYPGhG~~fVRnDGkvF~ 30 (168)
...|.-|+.+|+|+.- .++.+|+.+.
T Consensus 11 ~~~C~~C~~~I~~~~~--~~~a~~~~~H 36 (77)
T 1g47_A 11 SATCERCKGGFAPAEK--IVNSNGELYH 36 (77)
T ss_dssp CCBCSSSCCBCCSTTT--CEEETTEEEC
T ss_pred CCCchhcCCccCCCce--EEEeCccEec
Confidence 4578999999987532 3445566554
No 37
>3tgv_A Heme-binding protein HUTZ; 2.00A {Vibrio cholerae}
Probab=27.63 E-value=26 Score=25.55 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=26.0
Q ss_pred CccceEEeeCCceEEEechhhhhhhhcccCCc
Q 030949 16 GHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPR 47 (168)
Q Consensus 16 GhG~~fVRnDGkvF~FcsSKC~k~fk~KRNPR 47 (168)
+.-.-||..||.++.+++...++.-.+++|||
T Consensus 30 ~s~v~~~~~~~~~~~~~s~~~~~~~nl~~~pr 61 (148)
T 3tgv_A 30 VSYAPFVQNQEGYFVLISHIARHARNLEVNPQ 61 (148)
T ss_dssp EEEEEEEEETTEEEEEEETTSHHHHHHHHSCE
T ss_pred EEEEEEEEECCEEEEEECCccHHHHHHHhCCC
Confidence 33466888899988888888888888999997
No 38
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=26.58 E-value=16 Score=25.41 Aligned_cols=23 Identities=35% Similarity=0.510 Sum_probs=18.8
Q ss_pred ceeeeecCCCCccCCccceEEeeC
Q 030949 2 RLEKCWFCSSTVYPGHGIQFVRND 25 (168)
Q Consensus 2 kie~CsFcG~kIYPGhG~~fVRnD 25 (168)
++.+|. ||..|..+.-+.|...|
T Consensus 20 kT~~C~-CG~~~~~~k~rif~~~~ 42 (71)
T 1gh9_A 20 KTRKCV-CGRTVNVKDRRIFGRAD 42 (71)
T ss_dssp SEEEET-TTEEEECCSSSCBSCCS
T ss_pred cEEECC-CCCeeeeceEEEEEecC
Confidence 577897 99999999988888654
No 39
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.30 E-value=30 Score=22.43 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=19.2
Q ss_pred ceeeeecCCCCccCCccceEEeeCCceEE
Q 030949 2 RLEKCWFCSSTVYPGHGIQFVRNDAKIFR 30 (168)
Q Consensus 2 kie~CsFcG~kIYPGhG~~fVRnDGkvF~ 30 (168)
....|.-|+.+|++ .+|+-.|+.|.
T Consensus 14 ~~~~C~~C~~~I~~----~~~~a~~~~~H 38 (79)
T 1x62_A 14 KLPMCDKCGTGIVG----VFVKLRDRHRH 38 (79)
T ss_dssp CCCCCSSSCCCCCS----SCEECSSCEEC
T ss_pred CCCccccCCCCccC----cEEEECcceeC
Confidence 35689999999994 26777787775
No 40
>2ntk_A IMP cyclohydrolase; alpha-beta-BETA-alpha NTN hydrolase fold; HET: IMP; 2.03A {Methanothermobacterthermautotrophicus} SCOP: d.153.2.1 PDB: 2ntl_A* 2ntm_A 1kuu_A
Probab=24.97 E-value=30 Score=28.96 Aligned_cols=29 Identities=21% Similarity=0.262 Sum_probs=23.3
Q ss_pred CCCccCCccceEEee-CCc-eEEEechhhhh
Q 030949 10 SSTVYPGHGIQFVRN-DAK-IFRFCRSKCHK 38 (168)
Q Consensus 10 G~kIYPGhG~~fVRn-DGk-vF~FcsSKC~k 38 (168)
+...|||+|++.=++ ||+ +.+|.+|..+-
T Consensus 18 ~~n~YpGRgIvvG~t~~G~~vaY~I~sRSfp 48 (222)
T 2ntk_A 18 GSHMYLGRILAVGRNSNGSFVAYRVSSRSFP 48 (222)
T ss_dssp TTCCCCCSEEEEEEETTEEEEEEEEECSSCC
T ss_pred hcCCCCCCeEEEeeCCCCCEEEEEEecCCCC
Confidence 457899999999998 998 55777776654
No 41
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=24.86 E-value=43 Score=22.16 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=15.9
Q ss_pred eeeeecCCCCccCCccceEEeeCCceEE
Q 030949 3 LEKCWFCSSTVYPGHGIQFVRNDAKIFR 30 (168)
Q Consensus 3 ie~CsFcG~kIYPGhG~~fVRnDGkvF~ 30 (168)
...|.-|+..|++ .+|+..|+.|.
T Consensus 25 ~~~C~~C~~~I~~----~~~~a~~~~~H 48 (89)
T 1x64_A 25 MPLCDKCGSGIVG----AVVKARDKYRH 48 (89)
T ss_dssp CCBCTTTCCBCCS----CCEESSSCEEC
T ss_pred CCCcccCCCEecc----cEEEECCceEC
Confidence 3568888888884 34666666654
No 42
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.83 E-value=49 Score=20.64 Aligned_cols=26 Identities=19% Similarity=0.452 Sum_probs=16.8
Q ss_pred eeeeecCCCCccCCccceEEeeCCceEE
Q 030949 3 LEKCWFCSSTVYPGHGIQFVRNDAKIFR 30 (168)
Q Consensus 3 ie~CsFcG~kIYPGhG~~fVRnDGkvF~ 30 (168)
...|+-|+.+|+|+. ..|.-+|+.+.
T Consensus 5 ~~~C~~C~~~I~~~~--~~~~a~~~~~H 30 (72)
T 1x4k_A 5 SSGCQECKKTIMPGT--RKMEYKGSSWH 30 (72)
T ss_dssp CCCBSSSCCCCCSSS--CEEEETTEEEE
T ss_pred CCCCccCCCcccCCc--eEEEECcCeec
Confidence 357899999999863 23444555554
No 43
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.59 E-value=29 Score=22.24 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=17.2
Q ss_pred eeeecCCCCccCCccceEEeeCCceEE
Q 030949 4 EKCWFCSSTVYPGHGIQFVRNDAKIFR 30 (168)
Q Consensus 4 e~CsFcG~kIYPGhG~~fVRnDGkvF~ 30 (168)
..|.-|+.+|++. +|.-.|+.+.
T Consensus 16 ~~C~~C~~~I~~~----~v~a~~~~~H 38 (80)
T 2cuq_A 16 PRCARCSKTLTQG----GVTYRDQPWH 38 (80)
T ss_dssp CCCTTTCCCCCSC----CEESSSSEEC
T ss_pred CcCCCCCCEecCc----EEEECCchhh
Confidence 5788999999864 5677777765
No 44
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.87 E-value=50 Score=21.20 Aligned_cols=22 Identities=18% Similarity=0.427 Sum_probs=10.8
Q ss_pred eecCCCCccCCccceEEeeCCceE
Q 030949 6 CWFCSSTVYPGHGIQFVRNDAKIF 29 (168)
Q Consensus 6 CsFcG~kIYPGhG~~fVRnDGkvF 29 (168)
|+-|+.++.+| ..|+-.||++|
T Consensus 34 C~~C~~~L~~~--~~f~~~~~~~y 55 (73)
T 1wig_A 34 CVRCGQMFAEG--EEMYLQGSSIW 55 (73)
T ss_dssp CSSSCCCCCSS--CCCEEETTEEE
T ss_pred eCCCCCCCCCC--CeeEeeCCEEE
Confidence 45555555433 33455566643
No 45
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.52 E-value=54 Score=20.37 Aligned_cols=33 Identities=21% Similarity=0.448 Sum_probs=22.1
Q ss_pred eeeeecCCCCccCCccceEEeeCCceEE---Eechhhhhh
Q 030949 3 LEKCWFCSSTVYPGHGIQFVRNDAKIFR---FCRSKCHKN 39 (168)
Q Consensus 3 ie~CsFcG~kIYPGhG~~fVRnDGkvF~---FcsSKC~k~ 39 (168)
...|.-|+.+|++. +|...|+.+. |.=+.|.+.
T Consensus 5 ~~~C~~C~~~I~~~----~~~a~~~~~H~~CF~C~~C~~~ 40 (70)
T 2d8z_A 5 SSGCVQCKKPITTG----GVTYREQPWHKECFVCTACRKQ 40 (70)
T ss_dssp CCBCSSSCCBCCSS----EEESSSSEEETTTSBCSSSCCB
T ss_pred CCCCcccCCeeccc----eEEECccccCCCCCccCCCCCc
Confidence 35799999999853 3777788776 333445443
No 46
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.28 E-value=30 Score=22.80 Aligned_cols=34 Identities=18% Similarity=0.447 Sum_probs=22.4
Q ss_pred eeeeecCCCCccCCccceEEeeCCceEE---Eechhhhhh
Q 030949 3 LEKCWFCSSTVYPGHGIQFVRNDAKIFR---FCRSKCHKN 39 (168)
Q Consensus 3 ie~CsFcG~kIYPGhG~~fVRnDGkvF~---FcsSKC~k~ 39 (168)
...|.-|+..|+++.-. .-+|+++. |.=+.|.+.
T Consensus 15 ~~~C~~C~~~I~~~e~v---~a~~~~wH~~CF~C~~C~~~ 51 (82)
T 2co8_A 15 GDLCALCGEHLYVLERL---CVNGHFFHRSCFRCHTCEAT 51 (82)
T ss_dssp SCBCSSSCCBCCTTTBC---CBTTBCCBTTTCBCSSSCCB
T ss_pred CCCCcccCCCcccceEE---EECCCeeCCCcCEEcCCCCC
Confidence 46799999999988654 35677665 333445443
No 47
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=21.16 E-value=65 Score=22.41 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=18.1
Q ss_pred eeecCCCCccCCccceEEeeCCceEE
Q 030949 5 KCWFCSSTVYPGHGIQFVRNDAKIFR 30 (168)
Q Consensus 5 ~CsFcG~kIYPGhG~~fVRnDGkvF~ 30 (168)
.|.-|+.+|+|+. ..++..|+.|.
T Consensus 68 ~C~~C~~~I~~~e--~~~~a~~~~~H 91 (131)
T 2xjy_A 68 LCASCDKRIRAYE--MTMRVKDKVYH 91 (131)
T ss_dssp ECTTTCCEECTTS--EEEEETTEEEE
T ss_pred ChhhcCCccCccc--eeEeeCCceEC
Confidence 7999999998753 55666777776
No 48
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=20.09 E-value=50 Score=22.95 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=17.3
Q ss_pred eeeecCCCCccCCccceEEeeCCceEE
Q 030949 4 EKCWFCSSTVYPGHGIQFVRNDAKIFR 30 (168)
Q Consensus 4 e~CsFcG~kIYPGhG~~fVRnDGkvF~ 30 (168)
.+|+-|+.+|+|+. ..|+-.|+.+.
T Consensus 64 ~~C~~C~~~I~~~~--~~~~a~~~~~H 88 (126)
T 2xqn_T 64 VVCQGCHNAIDPEV--QRVTYNNFSWH 88 (126)
T ss_dssp CBCTTTCSBCCTTS--CEEEETTEEEE
T ss_pred ccCcccCCcCCcCc--eEEECCCCEee
Confidence 46888888888743 44566677776
Done!