BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030950
(168 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AG6|A Chain A, Plastocyanin From Spinach
Length = 99
Score = 183 bits (465), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 86/99 (86%), Positives = 92/99 (92%)
Query: 70 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTE 129
+EVLLGGDDGSLAF+P FSV+SGE+IVFKNNAGFPHNVVFDEDEIPSGVD +KISMS E
Sbjct: 1 VEVLLGGDDGSLAFLPGDFSVASGEEIVFKNNAGFPHNVVFDEDEIPSGVDAAKISMSEE 60
Query: 130 DLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 168
DLLN PGETY VTLTEKGTY FYCSPHQGAGMVG+VTVN
Sbjct: 61 DLLNAPGETYKVTLTEKGTYKFYCSPHQGAGMVGKVTVN 99
>pdb|1OOW|A Chain A, The Crystal Structure Of The Spinach Plastocyanin Double
Mutant G8dL12E GIVES INSIGHT INTO ITS LOW REACTIVITY
Towards Photosystem 1 And Cytochrome F
Length = 99
Score = 181 bits (458), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 85/99 (85%), Positives = 91/99 (91%)
Query: 70 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTE 129
+EVLLGGDDGS AF+P FSV+SGE+IVFKNNAGFPHNVVFDEDEIPSGVD +KISMS E
Sbjct: 1 VEVLLGGDDGSEAFLPGDFSVASGEEIVFKNNAGFPHNVVFDEDEIPSGVDAAKISMSEE 60
Query: 130 DLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 168
DLLN PGETY VTLTEKGTY FYCSPHQGAGMVG+VTVN
Sbjct: 61 DLLNAPGETYKVTLTEKGTYKFYCSPHQGAGMVGKVTVN 99
>pdb|2PCF|A Chain A, The Complex Of Cytochrome F And Plastocyanin Determined
With Paramagnetic Nmr. Based On The Structures Of
Cytochrome F And Plastocyanin, 10 Structures
pdb|1YLB|B Chain B, Nmr Solution Structure Of The Reduced Spinach Plastocyanin
Length = 99
Score = 180 bits (457), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 85/99 (85%), Positives = 91/99 (91%)
Query: 70 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTE 129
+EVLLGG DGSLAF+P FSV+SGE+IVFKNNAGFPHNVVFDEDEIPSGVD +KISMS E
Sbjct: 1 VEVLLGGGDGSLAFLPGDFSVASGEEIVFKNNAGFPHNVVFDEDEIPSGVDAAKISMSEE 60
Query: 130 DLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 168
DLLN PGETY VTLTEKGTY FYCSPHQGAGMVG+VTVN
Sbjct: 61 DLLNAPGETYKVTLTEKGTYKFYCSPHQGAGMVGKVTVN 99
>pdb|1TEF|A Chain A, Crystal Structure Of The Spinach Plastocyanin Mutants
G8dK30CT69C AND K30CT69C- A Study Of The Effect On
Crystal Packing And Thermostability From The
Introduction Of A Novel Disulfide Bond
pdb|1TEF|B Chain B, Crystal Structure Of The Spinach Plastocyanin Mutants
G8dK30CT69C AND K30CT69C- A Study Of The Effect On
Crystal Packing And Thermostability From The
Introduction Of A Novel Disulfide Bond
Length = 99
Score = 178 bits (452), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 84/99 (84%), Positives = 90/99 (90%)
Query: 70 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTE 129
+EVLLGGDDGSLAF+P FSV+SGE+IVF NNAGFPHNVVFDEDEIPSGVD +KISMS E
Sbjct: 1 VEVLLGGDDGSLAFLPGDFSVASGEEIVFCNNAGFPHNVVFDEDEIPSGVDAAKISMSEE 60
Query: 130 DLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 168
DLLN PGE Y VTLTEKGTY FYCSPHQGAGMVG+VTVN
Sbjct: 61 DLLNAPGECYKVTLTEKGTYKFYCSPHQGAGMVGKVTVN 99
>pdb|1TEG|A Chain A, Crystal Structure Of The Spinach Plastocyanin Mutants
G8dK30CT69C And K30cT69C- A Study Of The Effect On
Crystal Packing And Thermostability From The
Introduction Of A Novel Disulfide Bond
pdb|1TEG|B Chain B, Crystal Structure Of The Spinach Plastocyanin Mutants
G8dK30CT69C And K30cT69C- A Study Of The Effect On
Crystal Packing And Thermostability From The
Introduction Of A Novel Disulfide Bond
Length = 99
Score = 175 bits (444), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 83/99 (83%), Positives = 89/99 (89%)
Query: 70 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTE 129
+EVLLGG DGSLAF+P FSV+SGE+IVF NNAGFPHNVVFDEDEIPSGVD +KISMS E
Sbjct: 1 VEVLLGGGDGSLAFLPGDFSVASGEEIVFCNNAGFPHNVVFDEDEIPSGVDAAKISMSEE 60
Query: 130 DLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 168
DLLN PGE Y VTLTEKGTY FYCSPHQGAGMVG+VTVN
Sbjct: 61 DLLNAPGECYKVTLTEKGTYKFYCSPHQGAGMVGKVTVN 99
>pdb|1TKW|A Chain A, The Transient Complex Of Poplar Plastocyanin With Turnip
Cytochrome F Determined With Paramagnetic Nmr
pdb|1PLC|A Chain A, Accuracy And Precision In Protein Crystal Structure
Analysis: Restrained Least-Squares Refinement Of The
Crystal Structure Of Poplar Plastocyanin At 1.33
Angstroms Resolution
pdb|1PNC|A Chain A, Accuracy And Precision In Protein Crystal Structure
Analysis: Two Independent Refinements Of The Structure
Of Poplar Plastocyanin At 173k
pdb|1PND|A Chain A, Accuracy And Precision In Protein Crystal Structure
Analysis: Two Independent Refinements Of The Structure
Of Poplar Plastocyanin At 173k
pdb|2PCY|A Chain A, The Crystal Structure Of Poplar Apoplastocyanin At 1.8-
Angstroms Resolution. The Geometry Of The Copper-Binding
Site Is Created By The Polypeptide
pdb|3PCY|A Chain A, The Crystal Structure Of Mercury-Substituted Poplar
Plastocyanin At 1.9-Angstroms Resolution
pdb|4PCY|A Chain A, Crystal Structure Analyses Of Reduced (Cui) Poplar
Plastocyanin At Six Ph Values
pdb|5PCY|A Chain A, Crystal Structure Analyses Of Reduced (Cui) Poplar
Plastocyanin At Six Ph Values
pdb|6PCY|A Chain A, Crystal Structure Analyses Of Reduced (Cui) Poplar
Plastocyanin At Six Ph Values
pdb|4DP7|X Chain X, The 1.08 Angstrom Crystal Structure Of Oxidized (cuii)
Poplar Plastocyanin A At Ph 4.0
pdb|4DP8|X Chain X, The 1.07 Angstrom Crystal Structure Of Reduced (cui)
Poplar Plastocyanin A At Ph 4.0
pdb|4DP9|X Chain X, The 1.00 Angstrom Crystal Structure Of Oxidized (cuii)
Poplar Plastocyanin A At Ph 6.0
pdb|4DPA|X Chain X, The 1.05 Angstrom Crystal Structure Of Reduced (cui)
Poplar Plastocyanin A At Ph 6.0
pdb|4DPB|X Chain X, The 1.00 Angstrom Crystal Structure Of Oxidized (cuii)
Poplar Plastocyanin A At Ph 8.0
pdb|4DPC|X Chain X, The 1.06 Angstrom Crystal Structure Of Reduced (cui)
Poplar Plastocyanin A At Ph 8.0
Length = 99
Score = 172 bits (435), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 81/99 (81%), Positives = 87/99 (87%)
Query: 70 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTE 129
I+VLLG DDGSLAFVPS FS+S GEKIVFKNNAGFPHN+VFDED IPSGVD SKISMS E
Sbjct: 1 IDVLLGADDGSLAFVPSEFSISPGEKIVFKNNAGFPHNIVFDEDSIPSGVDASKISMSEE 60
Query: 130 DLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 168
DLLN GET+ V L+ KG YSFYCSPHQGAGMVG+VTVN
Sbjct: 61 DLLNAKGETFEVALSNKGEYSFYCSPHQGAGMVGKVTVN 99
>pdb|9PCY|A Chain A, High-Resolution Solution Structure Of Reduced French Bean
Plastocyanin And Comparison With The Crystal Structure
Of Poplar Plastocyanin
Length = 99
Score = 169 bits (429), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 82/98 (83%), Positives = 85/98 (86%)
Query: 71 EVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTED 130
EVLLG DGSL FVPS FSV SGEKIVFKNNAGFPHNVVFDEDEIP+GVD KISM E+
Sbjct: 2 EVLLGSGDGSLVFVPSEFSVPSGEKIVFKNNAGFPHNVVFDEDEIPAGVDAVKISMPEEE 61
Query: 131 LLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 168
LLN PGETY VTL KGTYSFYCSPHQGAGMVG+VTVN
Sbjct: 62 LLNAPGETYVVTLDTKGTYSFYCSPHQGAGMVGKVTVN 99
>pdb|4DP0|X Chain X, The 1.5 Angstrom Crystal Structure Of Oxidized (cuii)
Poplar Plastocyanin B At Ph 4.0
pdb|4DP1|X Chain X, The 1.35 Angstrom Crystal Structure Of Reduced (cui)
Poplar Plastocyanin B At Ph 4.0
pdb|4DP2|X Chain X, The 1.8 Angstrom Crystal Structure Of Oxidized (cuii)
Poplar Plastocyanin B At Ph 6.0
pdb|4DP4|X Chain X, The 1.54 Angstrom Crystal Structure Of Reduced (cui)
Poplar Plastocyanin B At Ph 6.0
pdb|4DP5|X Chain X, The 1.88 Angstrom Crystal Structure Of Oxidized (cuii)
Poplar Plastocyanin B At Ph 8.0
pdb|4DP6|X Chain X, The 1.67 Angstrom Crystal Structure Of Reduced (cui)
Poplar Plastocyanin B At Ph 8.0
Length = 99
Score = 168 bits (425), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 78/99 (78%), Positives = 88/99 (88%)
Query: 70 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTE 129
++VLLG DDGSLAFVPS FSV +GEKIVFKNNAGFPHNV+FDED +PSGVDVSKISMS E
Sbjct: 1 VDVLLGADDGSLAFVPSEFSVPAGEKIVFKNNAGFPHNVLFDEDAVPSGVDVSKISMSEE 60
Query: 130 DLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 168
DLLN GET+ V L++KG Y+FYCSPHQGAGMVG+V VN
Sbjct: 61 DLLNAKGETFEVALSDKGEYTFYCSPHQGAGMVGKVIVN 99
>pdb|1JXG|A Chain A, The 1.6 A Resolution Crystal Structure Of A Mutant Poplar
Plastocyanin Bearing A 21-25 Engeneered Disulfide Bridge
pdb|1JXG|B Chain B, The 1.6 A Resolution Crystal Structure Of A Mutant Poplar
Plastocyanin Bearing A 21-25 Engeneered Disulfide Bridge
Length = 100
Score = 167 bits (424), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 80/99 (80%), Positives = 85/99 (85%)
Query: 70 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTE 129
I+VLLG DDGSLAFVPS FS S G KIVFKNNAGFPHN+VFDED IPSGVD SKISMS E
Sbjct: 2 IDVLLGADDGSLAFVPSEFSCSPGCKIVFKNNAGFPHNIVFDEDSIPSGVDASKISMSEE 61
Query: 130 DLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 168
DLLN GET+ V L+ KG YSFYCSPHQGAGMVG+VTVN
Sbjct: 62 DLLNAKGETFEVALSNKGEYSFYCSPHQGAGMVGKVTVN 100
>pdb|1BYO|A Chain A, Wild-Type Plastocyanin From Silene
pdb|1BYO|B Chain B, Wild-Type Plastocyanin From Silene
Length = 99
Score = 165 bits (417), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 76/98 (77%), Positives = 85/98 (86%)
Query: 71 EVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTED 130
EVLLG DG LAFVPS S++SGEKI FKNNAGFPHN +FDEDE+P+GVDV+KISM ED
Sbjct: 2 EVLLGSSDGGLAFVPSDLSIASGEKITFKNNAGFPHNDLFDEDEVPAGVDVTKISMPEED 61
Query: 131 LLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 168
LLN PGE Y+VTLTEKGTY FYC+PH GAGMVG+VTVN
Sbjct: 62 LLNAPGEEYSVTLTEKGTYKFYCAPHAGAGMVGKVTVN 99
>pdb|1BYP|A Chain A, E43k,D44k Double Mutant Plastocyanin From Silene
Length = 99
Score = 160 bits (406), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 74/98 (75%), Positives = 84/98 (85%)
Query: 71 EVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTED 130
EVLLG DG LAFVPS S++SGEKI FKNNAGFPHN +FD+ E+P+GVDV+KISM ED
Sbjct: 2 EVLLGSSDGGLAFVPSDLSIASGEKITFKNNAGFPHNDLFDKKEVPAGVDVTKISMPEED 61
Query: 131 LLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 168
LLN PGE Y+VTLTEKGTY FYC+PH GAGMVG+VTVN
Sbjct: 62 LLNAPGEEYSVTLTEKGTYKFYCAPHAGAGMVGKVTVN 99
>pdb|1PLA|A Chain A, High-Resolution Solution Structure Of Reduced Parsley
Plastocyanin
pdb|1PLB|A Chain A, High-Resolution Solution Structure Of Reduced Parsley
Plastocyanin
Length = 97
Score = 148 bits (374), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 70/98 (71%), Positives = 79/98 (80%), Gaps = 2/98 (2%)
Query: 71 EVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTED 130
EV LG DDG L F PSSF+V++GEKI FKNNAGFPHN+VFDEDE+P+GV+ KIS +
Sbjct: 2 EVKLGSDDGGLVFSPSSFTVAAGEKITFKNNAGFPHNIVFDEDEVPAGVNAEKISQP--E 59
Query: 131 LLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 168
LNG GETY VTLTEKGTY FYC PH GAGM G+VTVN
Sbjct: 60 YLNGAGETYEVTLTEKGTYKFYCEPHAGAGMKGEVTVN 97
>pdb|2PLT|A Chain A, Structure Determination Of Plastocyanin From A Crystal
Specimen With Hemihedral Twinning Fraction Of One-Half
Length = 98
Score = 126 bits (317), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 58/96 (60%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 72 VLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDL 131
V LG D G+L FVP + ++ SGE + F NNAGFPHN+VFDED IPSGV+ IS +D
Sbjct: 4 VKLGADSGALEFVPKTLTIKSGETVNFVNNAGFPHNIVFDEDAIPSGVNADAISR--DDY 61
Query: 132 LNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 167
LN PGETY+V LT G Y +YC PHQGAGMVG++ V
Sbjct: 62 LNAPGETYSVKLTAAGEYGYYCEPHQGAGMVGKIIV 97
>pdb|7PCY|A Chain A, The Crystal Structure Of Plastocyanin From A Green Alga,
Enteromorpha Prolifera
Length = 98
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/96 (60%), Positives = 67/96 (69%), Gaps = 2/96 (2%)
Query: 72 VLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDL 131
V LGGDDGSLAFVP++ +V +GE I F NNAGFPHN+VFDED +P+GVD I S ED
Sbjct: 4 VKLGGDDGSLAFVPNNITVGAGESIEFINNAGFPHNIVFDEDAVPAGVDADAI--SAEDY 61
Query: 132 LNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 167
LN G+T LT GTY YC PH GAGM +TV
Sbjct: 62 LNSKGQTVVRKLTTPGTYGVYCDPHSGAGMKMTITV 97
>pdb|1IUZ|A Chain A, Plastocyanin
Length = 98
Score = 116 bits (291), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 58/97 (59%), Positives = 66/97 (68%), Gaps = 2/97 (2%)
Query: 72 VLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDL 131
V LGGDDGSLAFVPS SV++GE I F NNAGFPHN+VFDED +P+GVD IS +D
Sbjct: 4 VKLGGDDGSLAFVPSKISVAAGEAIEFVNNAGFPHNIVFDEDAVPAGVDADAISY--DDY 61
Query: 132 LNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 168
LN GET L+ G Y YC PH GAGM +TV
Sbjct: 62 LNSKGETVVRKLSTPGVYGVYCEPHAGAGMKMTITVQ 98
>pdb|1PCS|A Chain A, The 2.15 A Crystal Structure Of A Triple Mutant
Plastocyanin From The Cyanobacterium Synechocystis Sp.
Pcc 6803
Length = 98
Score = 93.6 bits (231), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 64/96 (66%), Gaps = 3/96 (3%)
Query: 72 VLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDL 131
V +G D G+L F PS+ ++ +GE++ + NN PHN+VFD D +P+ + +S + L
Sbjct: 5 VKMGSDSGALVFEPSTVTIKAGEEVKWVNNKLSPHNIVFDADGVPAD---TAAKLSHKGL 61
Query: 132 LNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 167
L GE++ T TE GTY++YC PH+GAGMVG+V V
Sbjct: 62 LFAAGESFTSTFTEPGTYTYYCEPHRGAGMVGKVVV 97
>pdb|1JXD|A Chain A, Solution Structure Of Reduced Cu(i) Plastocyanin From
Synechocystis Pcc6803
pdb|1J5D|A Chain A, Solution Structure Of Oxidized Paramagnetic Cu(Ii)
Plastocyanin From Synechocystis Pcc6803-Minimized
Average Structure
Length = 98
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 63/98 (64%), Gaps = 5/98 (5%)
Query: 72 VLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDV-SKISMSTED 130
V +G D G+L F PS+ ++ +GE++ + NN PHN+VF D GVD + +S +
Sbjct: 5 VKMGSDSGALVFEPSTVTIKAGEEVKWVNNKLSPHNIVFAAD----GVDADTAAKLSHKG 60
Query: 131 LLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 168
L GE++ T TE GTY++YC PH+GAGMVG+V V+
Sbjct: 61 LAFAAGESFTSTFTEPGTYTYYCEPHRGAGMVGKVVVD 98
>pdb|1JXF|A Chain A, Solution Structure Of Reduced Cu(I) Plastocyanin From
Synechocystis Pcc6803
pdb|1J5C|A Chain A, Solution Structure Of Oxidized Paramagnetic Cu(Ii)
Plastocyanin From Synechocystis Pcc6803
Length = 98
Score = 86.7 bits (213), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 63/98 (64%), Gaps = 5/98 (5%)
Query: 72 VLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDV-SKISMSTED 130
V +G D G+L F PS+ ++ +GE++ + NN PHN+VF D GVD + +S +
Sbjct: 5 VKMGSDSGALVFEPSTVTIKAGEEVKWVNNKLSPHNIVFAAD----GVDADTAAKLSHKG 60
Query: 131 LLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 168
L GE++ T TE GTY++YC PH+GAGMVG+V V+
Sbjct: 61 LAFAAGESFTSTFTEPGTYTYYCEPHRGAGMVGKVVVD 98
>pdb|2W88|A Chain A, Plastocyanin Variant With N-Terminal Methionine - Open
Structure
pdb|2W88|B Chain B, Plastocyanin Variant With N-Terminal Methionine - Open
Structure
pdb|2W88|C Chain C, Plastocyanin Variant With N-Terminal Methionine - Open
Structure
pdb|2W8C|A Chain A, Plastocyanin Variant With N-Terminal Methionine - Closed
Structure
pdb|2W8C|B Chain B, Plastocyanin Variant With N-Terminal Methionine - Closed
Structure
Length = 106
Score = 86.7 bits (213), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 62/99 (62%), Gaps = 3/99 (3%)
Query: 72 VLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDL 131
V +G D G L F P++ +V G+ + + NN PHN++FD+ ++P +S L
Sbjct: 6 VKMGADSGLLQFEPANVTVHPGDTVKWVNNKLPPHNILFDDKQVPGASKELADKLSHSQL 65
Query: 132 LNGPGETYAVTLTEK---GTYSFYCSPHQGAGMVGQVTV 167
+ PGE+Y +T + GTY++YC+PH+GAGMVG++TV
Sbjct: 66 MFSPGESYEITFSSDFPAGTYTYYCAPHRGAGMVGKITV 104
>pdb|1M9W|A Chain A, Study Of Electrostatic Potential Surface Distribution
Using High Resolution Side-Chain Conformation Determined
By Nmr
Length = 98
Score = 86.7 bits (213), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 62/97 (63%), Gaps = 5/97 (5%)
Query: 72 VLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDV-SKISMSTED 130
V +G D G+L F PS+ ++ +GE++ + NN PHN+VF D GVD + +S +
Sbjct: 5 VKMGSDSGALVFEPSTVTIKAGEEVKWVNNKLSPHNIVFAAD----GVDADTAAKLSHKG 60
Query: 131 LLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 167
L GE++ T TE GTY++YC PH+GAGMVG+V V
Sbjct: 61 LAFAAGESFTSTFTEPGTYTYYCEPHRGAGMVGKVVV 97
>pdb|1BAW|A Chain A, Plastocyanin From Phormidium Laminosum
pdb|1BAW|B Chain B, Plastocyanin From Phormidium Laminosum
pdb|1BAW|C Chain C, Plastocyanin From Phormidium Laminosum
pdb|2Q5B|A Chain A, High Resolution Structure Of Plastocyanin From Phormidium
Laminosum
pdb|2Q5B|B Chain B, High Resolution Structure Of Plastocyanin From Phormidium
Laminosum
pdb|2Q5B|C Chain C, High Resolution Structure Of Plastocyanin From Phormidium
Laminosum
Length = 105
Score = 86.7 bits (213), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 62/99 (62%), Gaps = 3/99 (3%)
Query: 72 VLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDL 131
V +G D G L F P++ +V G+ + + NN PHN++FD+ ++P +S L
Sbjct: 5 VKMGADSGLLQFEPANVTVHPGDTVKWVNNKLPPHNILFDDKQVPGASKELADKLSHSQL 64
Query: 132 LNGPGETYAVTLTEK---GTYSFYCSPHQGAGMVGQVTV 167
+ PGE+Y +T + GTY++YC+PH+GAGMVG++TV
Sbjct: 65 MFSPGESYEITFSSDFPAGTYTYYCAPHRGAGMVGKITV 103
>pdb|1BXU|A Chain A, Oxidized Plastocyanin From Synechococcus Sp.
pdb|1BXV|A Chain A, Reduced Plastocyanin From Synechococcus Sp
Length = 91
Score = 85.9 bits (211), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 60/99 (60%), Gaps = 10/99 (10%)
Query: 70 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTE 129
+ + +G D+G LAF PS+ + +G+ + + NN PHNVV + + +S +
Sbjct: 3 VAIKMGADNGMLAFEPSTIEIQAGDTVQWVNNKLAPHNVVVE----------GQPELSHK 52
Query: 130 DLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 168
DL PGET+ T +E GTY++YC PH+GAGMVG++ V
Sbjct: 53 DLAFSPGETFEATFSEPGTYTYYCEPHRGAGMVGKIVVQ 91
>pdb|3CVB|A Chain A, Regulation Of Protein Function: Crystal Packing Interfaces
And Conformational Dimerization
pdb|3CVB|B Chain B, Regulation Of Protein Function: Crystal Packing Interfaces
And Conformational Dimerization
pdb|3CVC|A Chain A, Regulation Of Protein Function: Crystal Packing Interfaces
And Conformational Dimerization
pdb|3CVD|A Chain A, Regulation Of Protein Function: Crystal Packing Interfaces
And Conformational Dimerization
pdb|3CVD|B Chain B, Regulation Of Protein Function: Crystal Packing Interfaces
And Conformational Dimerization
pdb|3CVD|C Chain C, Regulation Of Protein Function: Crystal Packing Interfaces
And Conformational Dimerization
Length = 105
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 61/99 (61%), Gaps = 3/99 (3%)
Query: 72 VLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDL 131
V +G D G F P++ +V G+ + + NN PHN++FD+ ++P +S L
Sbjct: 5 VKMGADSGLFQFEPANVTVHPGDTVKWVNNKLPPHNILFDDKQVPGASKELADKLSHSQL 64
Query: 132 LNGPGETYAVTLTEK---GTYSFYCSPHQGAGMVGQVTV 167
+ PGE+Y +T + GTY++YC+PH+GAGMVG++TV
Sbjct: 65 MFSPGESYEITFSSDFPAGTYTYYCAPHRGAGMVGKITV 103
>pdb|2JXM|A Chain A, Ensemble Of Twenty Structures Of The Prochlorothrix
Hollandica Plastocyanin- Cytochrome F Complex
Length = 97
Score = 83.2 bits (204), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 63/98 (64%), Gaps = 4/98 (4%)
Query: 70 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTE 129
+++ +G D + + P + S+S+G+ + F N PHNV+FD+ +P+G S ++S
Sbjct: 3 VQIKMGTDKYAPLYEPKALSISAGDTVEFVMNKVGPHNVIFDK--VPAGE--SAPALSNT 58
Query: 130 DLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 167
L PG Y+VTL GTYSFYC+PH+GAGMVG +TV
Sbjct: 59 KLAIAPGSFYSVTLGTPGTYSFYCTPHRGAGMVGTITV 96
>pdb|1B3I|A Chain A, Nmr Solution Structure Of Plastocyanin From The
Photosynthetic Prokaryote, Prochlorothrix Hollandica
(Minimized Average Structure)
pdb|2B3I|A Chain A, Nmr Solution Structure Of Plastocyanin From The
Photosynthetic Prokaryote, Prochlorothrix Hollandica (19
Structures)
Length = 97
Score = 82.8 bits (203), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 63/98 (64%), Gaps = 4/98 (4%)
Query: 70 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTE 129
+++ +G D + + P + S+S+G+ + F N PHNV+FD+ +P+G S ++S
Sbjct: 3 VQIKMGTDKYAPLYEPKALSISAGDTVEFVMNKVGPHNVIFDK--VPAGE--SAPALSNT 58
Query: 130 DLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 167
L PG Y+VTL GTYSFYC+PH+GAGMVG +TV
Sbjct: 59 KLAIAPGSFYSVTLGTPGTYSFYCTPHRGAGMVGTITV 96
>pdb|3BQV|A Chain A, Crystal Structure Of The Double Mutant D44a D45a
Plastocyanin From Phormidium Laminosum
Length = 105
Score = 82.8 bits (203), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 60/99 (60%), Gaps = 3/99 (3%)
Query: 72 VLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDL 131
V +G D G L F P++ +V G+ + + NN PHN++F ++P +S L
Sbjct: 5 VKMGADSGLLQFEPANVTVHPGDTVKWVNNKLPPHNILFAAKQVPGASKELADKLSHSQL 64
Query: 132 LNGPGETYAVTLTEK---GTYSFYCSPHQGAGMVGQVTV 167
+ PGE+Y +T + GTY++YC+PH+GAGMVG++TV
Sbjct: 65 MFSPGESYEITFSSDFPAGTYTYYCAPHRGAGMVGKITV 103
>pdb|2GIM|A Chain A, 1.6 Angstrom Structure Of Plastocyanin From Anabaena
Variabilis
pdb|2GIM|C Chain C, 1.6 Angstrom Structure Of Plastocyanin From Anabaena
Variabilis
Length = 106
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 61/100 (61%), Gaps = 5/100 (5%)
Query: 72 VLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPS-GVDVSKISMSTED 130
V LG D G L F P+ ++ G+ + F NN PHNVVFD P+ D++K S+S +
Sbjct: 6 VKLGSDKGLLVFEPAKLTIKPGDTVEFLNNKVPPHNVVFDAALNPAKSADLAK-SLSHKQ 64
Query: 131 LLNGPGETYAVTL---TEKGTYSFYCSPHQGAGMVGQVTV 167
LL PG++ + T G Y+FYC PH+GAGMVG++TV
Sbjct: 65 LLMSPGQSTSTTFPADAPAGEYTFYCEPHRGAGMVGKITV 104
>pdb|1FA4|A Chain A, Elucidation Of The Paramagnetic Relaxation Of Heteronuclei
And Protons In Cu(Ii) Plastocyanin From Anabaena
Variabilis
pdb|1NIN|A Chain A, Plastocyanin From Anabaena Variabilis, Nmr, 20 Structures
pdb|1TU2|A Chain A, The Complex Of Nostoc Cytochrome F And Plastocyanin
Determin With Paramagnetic Nmr. Based On The Structures
Of Cytochrome F And Plastocyanin, 10 Structures
pdb|2CJ3|A Chain A, Crystal Structure Of Plastocyanin From A Cyanobacterium,
Anabaena Variabilis
pdb|2CJ3|B Chain B, Crystal Structure Of Plastocyanin From A Cyanobacterium,
Anabaena Variabilis
Length = 105
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 61/100 (61%), Gaps = 5/100 (5%)
Query: 72 VLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPS-GVDVSKISMSTED 130
V LG D G L F P+ ++ G+ + F NN PHNVVFD P+ D++K S+S +
Sbjct: 5 VKLGSDKGLLVFEPAKLTIKPGDTVEFLNNKVPPHNVVFDAALNPAKSADLAK-SLSHKQ 63
Query: 131 LLNGPGETYAVTL---TEKGTYSFYCSPHQGAGMVGQVTV 167
LL PG++ + T G Y+FYC PH+GAGMVG++TV
Sbjct: 64 LLMSPGQSTSTTFPADAPAGEYTFYCEPHRGAGMVGKITV 103
>pdb|2BZ7|A Chain A, Oxidized And Reduced Structures Of A Mutant Plastocyanin
Of Fern
pdb|2BZC|A Chain A, Oxidized And Reduced Structures Of A Mutant Plastocyanin
Of Fern
Length = 102
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 58/103 (56%), Gaps = 9/103 (8%)
Query: 71 EVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGV------DVSKI 124
+V +G + G+ F P S +VS+GE + F PHN+VFD IP+G ++
Sbjct: 2 KVEVGDEVGNFKFYPDSITVSAGEAVEFTLVGETPHNIVFD---IPAGAPGTVASELKAA 58
Query: 125 SMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 167
SM DLL+ ++ ++ GTY+FYC+PH+ A M G +TV
Sbjct: 59 SMDENDLLSEDEPSFKAKVSTPGTYTFYCTPHKSANMKGTLTV 101
>pdb|1KDI|A Chain A, Reduced Form Of Plastocyanin From Dryopteris Crassirhizoma
pdb|1KDJ|A Chain A, Oxidized Form Of Plastocyanin From Dryopteris
Crassirhizoma
Length = 102
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 57/103 (55%), Gaps = 9/103 (8%)
Query: 71 EVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGV------DVSKI 124
+V +G + G+ F P S +VS+GE + F HN+VFD IP+G ++
Sbjct: 2 KVEVGDEVGNFKFYPDSITVSAGEAVEFTLVGETGHNIVFD---IPAGAPGTVASELKAA 58
Query: 125 SMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 167
SM DLL+ ++ ++ GTY+FYC+PH+ A M G +TV
Sbjct: 59 SMDENDLLSEDEPSFKAKVSTPGTYTFYCTPHKSANMKGTLTV 101
>pdb|1BQK|A Chain A, Oxidized Pseudoazurin
pdb|1BQR|A Chain A, Reduced Pseudoazurin
pdb|1ZIA|A Chain A, Oxidized Pseudoazurin
pdb|1ZIB|A Chain A, Reduced Pseudoazurin
Length = 124
Score = 56.2 bits (134), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 49/99 (49%), Gaps = 12/99 (12%)
Query: 70 IEVLLGGDDGSLAFVPSSFSVSSGEKIVF-KNNAGFPHNVVFDEDEIPSGVDVSKISMST 128
+ +L G DG++ F P+S V+ G+ + F + G HNV + IP G + K ++
Sbjct: 5 VHMLNKGKDGAMVFEPASLKVAPGDTVTFIPTDKG--HNVETIKGMIPDGAEAFKSKIN- 61
Query: 129 EDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 167
E Y VT T G Y C+PH G GMVG V V
Sbjct: 62 --------ENYKVTFTAPGVYGVKCTPHYGMGMVGVVQV 92
>pdb|2JKW|A Chain A, Pseudoazurin M16f
pdb|2JKW|B Chain B, Pseudoazurin M16f
Length = 124
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 12/99 (12%)
Query: 70 IEVLLGGDDGSLAFVPSSFSVSSGEKIVF-KNNAGFPHNVVFDEDEIPSGVDVSKISMST 128
+ +L G DG+ F P+S V+ G+ + F + G HNV + IP G + K ++
Sbjct: 5 VHMLNKGKDGAFVFEPASLKVAPGDTVTFIPTDKG--HNVETIKGMIPDGAEAFKSKIN- 61
Query: 129 EDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 167
E Y VT T G Y C+PH G GMVG V V
Sbjct: 62 --------ENYKVTFTAPGVYGVKCTPHYGMGMVGVVQV 92
>pdb|1ADW|A Chain A, Pseudoazurin
pdb|1ADW|B Chain B, Pseudoazurin
pdb|3ERX|A Chain A, High-Resolution Structure Of Paracoccus Pantotrophus
Pseudoazurin
pdb|3ERX|B Chain B, High-Resolution Structure Of Paracoccus Pantotrophus
Pseudoazurin
Length = 123
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 10/98 (10%)
Query: 70 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTE 129
+ +L G+ G++ F P+ G+ I F HNV ++ +P GV+ K ++
Sbjct: 5 VHMLNKGESGAMVFEPAFVRAEPGDVINFVPTDK-SHNVEAIKEILPEGVESFKSKIN-- 61
Query: 130 DLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 167
E+Y +T+TE G Y C+PH G GMVG V V
Sbjct: 62 -------ESYTLTVTEPGLYGVKCTPHFGMGMVGLVQV 92
>pdb|3C75|A Chain A, Paracoccus Versutus Methylamine Dehydrogenase In Complex
With Amicyanin
pdb|3C75|B Chain B, Paracoccus Versutus Methylamine Dehydrogenase In Complex
With Amicyanin
Length = 132
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 80 SLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETY 139
+ ++ ++ +GE + + N PHNV F + + G D + M T+D + Y
Sbjct: 54 KMKYLTPEVTIKAGETVYWVNGEVMPHNVAFKKGIV--GEDAFRGEMMTKD------QAY 105
Query: 140 AVTLTEKGTYSFYCSPHQGAGMVGQVTVN 168
A+T E G+Y ++C+PH M G+V V
Sbjct: 106 AITFNEAGSYDYFCTPH--PFMRGKVIVE 132
>pdb|1ID2|A Chain A, Crystal Structure Of Amicyanin From Paracoccus Versutus
(Thiobacillus Versutus)
pdb|1ID2|B Chain B, Crystal Structure Of Amicyanin From Paracoccus Versutus
(Thiobacillus Versutus)
pdb|1ID2|C Chain C, Crystal Structure Of Amicyanin From Paracoccus Versutus
(Thiobacillus Versutus)
Length = 106
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 80 SLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETY 139
+ ++ ++ +GE + + N PHNV F + + G D + M T+D + Y
Sbjct: 28 KMKYLTPEVTIKAGETVYWVNGEVMPHNVAFKKGIV--GEDAFRGEMMTKD------QAY 79
Query: 140 AVTLTEKGTYSFYCSPHQGAGMVGQVTVN 168
A+T E G+Y ++C+PH M G+V V
Sbjct: 80 AITFNEAGSYDYFCTPH--PFMRGKVIVE 106
>pdb|1PAZ|A Chain A, Refinement Of The Structure Of Pseudoazurin From
Alcaligenes Faecalis S-6 At 1.55 Angstroms Resolution
pdb|1PZA|A Chain A, The Crystal Structures Of Reduced Pseudoazurin From
Alcaligenes Faecalis S-6 At Two Ph Values
pdb|1PZB|A Chain A, The Crystal Structures Of Reduced Pseudoazurin From
Alcaligenes Faecalis S-6 At Two Ph Values
pdb|1PZC|A Chain A, Apo-Pseudoazurin (Metal Free Protein)
pdb|3PAZ|A Chain A, Reduced Native Pseudoazurin From A. Faecalis
pdb|8PAZ|A Chain A, Oxidized Native Pseudoazurin From A. Faecalis
pdb|2P80|D Chain D, Solution Structure Of The Complex Between Nitrite
Reductase And Pseudoazurin From A. Faecalis
pdb|3NYK|A Chain A, The Structure Of Cobalt-Substituted Pseudoazurin From
Alcaligenes Faecalis
Length = 123
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 18/102 (17%)
Query: 70 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFP----HNVVFDEDEIPSGVDVSKIS 125
+ +L G +G++ F P+ + G+ + F P HNV +D IP G + K
Sbjct: 5 VHMLNKGAEGAMVFEPAYIKANPGDTVTF-----IPVDKGHNVESIKDMIPEGAEKFKSK 59
Query: 126 MSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 167
++ E Y +T+T+ G Y C+PH GM+ + V
Sbjct: 60 IN---------ENYVLTVTQPGAYLVKCTPHYAMGMIALIAV 92
>pdb|2UX6|A Chain A, Pseudoazurin With Engineered Amicyanin Ligand Loop,
Oxidized Form, Ph 7.5
pdb|2UX7|A Chain A, Pseudoazurin With Engineered Amicyanin Ligand Loop,
Reduced Form, Ph 7.5
pdb|2UXF|A Chain A, Pseudoazurin With Engineered Amicyanin Ligand Loop,
Oxidized Form, Ph 5.5
pdb|2UXG|A Chain A, Pseudoazurin With Engineered Amicyanin Ligand Loop,
Reduced Form, Ph 5.5
Length = 122
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 47/99 (47%), Gaps = 14/99 (14%)
Query: 70 IEVLLGGDDGSLAFVPSSFSVSSGEKIVF-KNNAGFPHNVVFDEDEIPSGVDVSKISMST 128
+ +L G DG++ F P+S V+ G+ + F + G HNV + IP G + K ++
Sbjct: 5 VHMLNKGKDGAMVFEPASLKVAPGDTVTFIPTDKG--HNVETIKGMIPDGAEAFKSKIN- 61
Query: 129 EDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 167
E Y VT T G Y C+PH MVG V V
Sbjct: 62 --------ENYKVTFTAPGVYGVKCTPH--PFMVGVVQV 90
>pdb|1PY0|A Chain A, Crystal Structure Of E51cE54C PSAZ FROM A.FAECALIS WITH
Clanp Probe
Length = 125
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 18/102 (17%)
Query: 70 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFP----HNVVFDEDEIPSGVDVSKIS 125
+ +L G +G++ F P+ + G+ + F P HNV +D IP G K
Sbjct: 7 VHMLNKGAEGAMVFEPAYIKANPGDTVTF-----IPVDKGHNVESIKDMIPCGACKFKSK 61
Query: 126 MSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 167
++ E Y +T+T+ G Y C+PH GM+ + V
Sbjct: 62 IN---------ENYVLTVTQPGAYLVKCTPHYAMGMIALIAV 94
>pdb|3TU6|A Chain A, The Structure Of A Pseudoazurin From Sinorhizobium
Meliltoi
Length = 127
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 13/100 (13%)
Query: 70 IEVLLGGDDGS-LAFVPSSFSVSSGEKIVF-KNNAGFPHNVVFDEDEIPSGVDVSKISMS 127
+E+L DG +AF P+ G+ + F + G HN + P G + K ++
Sbjct: 6 VEMLNKAADGRVMAFEPAVIRAQPGDTVTFVAKDKG--HNSALMKGGAPEGAETWKGKIN 63
Query: 128 TEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 167
E VTL++ G Y + C+PH G GM+G + V
Sbjct: 64 EE---------ITVTLSKPGVYMYQCAPHVGMGMIGAIVV 94
>pdb|4PAZ|A Chain A, Oxidized Mutant P80a Pseudoazurin From A. Faecalis
pdb|5PAZ|A Chain A, Reduced Mutant P80a Pseudoazurin From A. Faecalis
Length = 123
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 18/102 (17%)
Query: 70 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFP----HNVVFDEDEIPSGVDVSKIS 125
+ +L G +G++ F P+ + G+ + F P HNV +D IP G + K
Sbjct: 5 VHMLNKGAEGAMVFEPAYIKANPGDTVTF-----IPVDKGHNVESIKDMIPEGAEKFKSK 59
Query: 126 MSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 167
++ E Y +T+T+ G Y C+ H GM+ + V
Sbjct: 60 IN---------ENYVLTVTQPGAYLVKCTAHYAMGMIALIAV 92
>pdb|3PLY|A Chain A, Structure Of Oxidized P96g Mutant Of Amicyanin
pdb|3PLY|B Chain B, Structure Of Oxidized P96g Mutant Of Amicyanin
pdb|3PLY|C Chain C, Structure Of Oxidized P96g Mutant Of Amicyanin
pdb|3PLY|D Chain D, Structure Of Oxidized P96g Mutant Of Amicyanin
Length = 105
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 18/96 (18%)
Query: 77 DDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGP- 135
D + + V G+ + + N PHNV F +GV E L GP
Sbjct: 24 DIAKMKYETPELHVKVGDTVTWINREAMPHNVHF-----VAGV-------LGEAALKGPM 71
Query: 136 ---GETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 168
+ Y++T TE GTY ++C+PH M G+V V
Sbjct: 72 MKKEQAYSLTFTEAGTYDYHCTPH--GFMRGKVVVE 105
>pdb|6PAZ|A Chain A, Oxidized Mutant P80i Pseudoazurin From A. Faecalis
pdb|7PAZ|A Chain A, Reduced Mutant P80i Pseudoazurin From A. Faecalis
Length = 123
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 18/102 (17%)
Query: 70 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFP----HNVVFDEDEIPSGVDVSKIS 125
+ +L G +G++ F P+ + G+ + F P HNV +D IP G + K
Sbjct: 5 VHMLNKGAEGAMVFEPAYIKANPGDTVTF-----IPVDKGHNVESIKDMIPEGAEKFKSK 59
Query: 126 MSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 167
++ E Y +T+T+ G Y C+ H GM+ + V
Sbjct: 60 IN---------ENYVLTVTQPGAYLVKCTIHYAMGMIALIAV 92
>pdb|2MTA|A Chain A, Crystal Structure Of A Ternary Electron Transfer Complex
Between Methylamine Dehydrogenase, Amicyanin And A
C-Type Cytochrome
pdb|1BXA|A Chain A, Amicyanin Reduced, Ph 4.4, 1.3 Angstroms
pdb|2RAC|A Chain A, Amicyanin Reduced, Ph 7.7, 1.3 Angstroms
pdb|1MG2|C Chain C, Mutation Of Alpha Phe55 Of Methylamine Dehydrogenase
Alters The Reorganization Energy And Electronic Coupling
For Its Electron Transfer Reaction With Amicyanin
pdb|1MG2|G Chain G, Mutation Of Alpha Phe55 Of Methylamine Dehydrogenase
Alters The Reorganization Energy And Electronic Coupling
For Its Electron Transfer Reaction With Amicyanin
pdb|1MG2|K Chain K, Mutation Of Alpha Phe55 Of Methylamine Dehydrogenase
Alters The Reorganization Energy And Electronic Coupling
For Its Electron Transfer Reaction With Amicyanin
pdb|1MG2|O Chain O, Mutation Of Alpha Phe55 Of Methylamine Dehydrogenase
Alters The Reorganization Energy And Electronic Coupling
For Its Electron Transfer Reaction With Amicyanin
pdb|1MG3|C Chain C, Mutation Of Alpha Phe55 Of Methylamine Dehydrogenase
Alters The Reorganization Energy And Electronic Coupling
For Its Electron Transfer Reaction With Amicyanin
pdb|1MG3|G Chain G, Mutation Of Alpha Phe55 Of Methylamine Dehydrogenase
Alters The Reorganization Energy And Electronic Coupling
For Its Electron Transfer Reaction With Amicyanin
pdb|1MG3|K Chain K, Mutation Of Alpha Phe55 Of Methylamine Dehydrogenase
Alters The Reorganization Energy And Electronic Coupling
For Its Electron Transfer Reaction With Amicyanin
pdb|1MG3|O Chain O, Mutation Of Alpha Phe55 Of Methylamine Dehydrogenase
Alters The Reorganization Energy And Electronic Coupling
For Its Electron Transfer Reaction With Amicyanin
pdb|1T5K|A Chain A, Crystal Structure Of Amicyanin Substituted With Cobalt
pdb|1T5K|B Chain B, Crystal Structure Of Amicyanin Substituted With Cobalt
pdb|1T5K|C Chain C, Crystal Structure Of Amicyanin Substituted With Cobalt
pdb|1T5K|D Chain D, Crystal Structure Of Amicyanin Substituted With Cobalt
pdb|2GC4|C Chain C, Structural Comparison Of The Oxidized Ternary Electron
Transfer Complex Of Methylamine Dehydrogenase, Amicyanin
And Cytochrome C551i From Paracoccus Denitrificans With
The Substrate-Reduced, Copper Free Complex At 1.9 A
Resolution.
pdb|2GC4|G Chain G, Structural Comparison Of The Oxidized Ternary Electron
Transfer Complex Of Methylamine Dehydrogenase, Amicyanin
And Cytochrome C551i From Paracoccus Denitrificans With
The Substrate-Reduced, Copper Free Complex At 1.9 A
Resolution.
pdb|2GC4|K Chain K, Structural Comparison Of The Oxidized Ternary Electron
Transfer Complex Of Methylamine Dehydrogenase, Amicyanin
And Cytochrome C551i From Paracoccus Denitrificans With
The Substrate-Reduced, Copper Free Complex At 1.9 A
Resolution.
pdb|2GC4|O Chain O, Structural Comparison Of The Oxidized Ternary Electron
Transfer Complex Of Methylamine Dehydrogenase, Amicyanin
And Cytochrome C551i From Paracoccus Denitrificans With
The Substrate-Reduced, Copper Free Complex At 1.9 A
Resolution.
pdb|2GC7|C Chain C, Substrate Reduced, Copper Free Complex Of Methylamine
Dehydrogenase, Amicyanin And Cytochrome C551i From
Paracoccus Denitrificans.
pdb|2GC7|G Chain G, Substrate Reduced, Copper Free Complex Of Methylamine
Dehydrogenase, Amicyanin And Cytochrome C551i From
Paracoccus Denitrificans.
pdb|2GC7|K Chain K, Substrate Reduced, Copper Free Complex Of Methylamine
Dehydrogenase, Amicyanin And Cytochrome C551i From
Paracoccus Denitrificans.
pdb|2GC7|O Chain O, Substrate Reduced, Copper Free Complex Of Methylamine
Dehydrogenase, Amicyanin And Cytochrome C551i From
Paracoccus Denitrificans.
pdb|2J55|A Chain A, X-Ray Reduced Paraccocus Denitrificans Methylamine
Dehydrogenase O-Quinone In Complex With Amicyanin.
pdb|2J55|B Chain B, X-Ray Reduced Paraccocus Denitrificans Methylamine
Dehydrogenase O-Quinone In Complex With Amicyanin.
pdb|2J56|A Chain A, X-Ray Reduced Paraccocus Denitrificans Methylamine
Dehydrogenase N-Semiquinone In Complex With Amicyanin.
pdb|2J56|B Chain B, X-Ray Reduced Paraccocus Denitrificans Methylamine
Dehydrogenase N-Semiquinone In Complex With Amicyanin.
pdb|2J57|A Chain A, X-Ray Reduced Paraccocus Denitrificans Methylamine
Dehydrogenase N-Quinol In Complex With Amicyanin.
pdb|2J57|B Chain B, X-Ray Reduced Paraccocus Denitrificans Methylamine
Dehydrogenase N-Quinol In Complex With Amicyanin.
pdb|2J57|C Chain C, X-Ray Reduced Paraccocus Denitrificans Methylamine
Dehydrogenase N-Quinol In Complex With Amicyanin.
pdb|2J57|D Chain D, X-Ray Reduced Paraccocus Denitrificans Methylamine
Dehydrogenase N-Quinol In Complex With Amicyanin.
pdb|1AAC|A Chain A, Amicyanin Oxidized, 1.31 Angstroms
pdb|1AAJ|A Chain A, Crystal Structure Analysis Of Amicyanin And Apoamicyanin
From Paracoccus Denitrificans At 2.0 Angstroms And 1.8
Angstroms Resolution
pdb|1AAN|A Chain A, Crystal Structure Analysis Of Amicyanin And Apoamicyanin
From Paracoccus Denitrificans At 2.0 Angstroms And 1.8
Angstroms Resolution
pdb|2OV0|A Chain A, Structure Of The Blue Copper Protein Amicyanin To 0.75 A
Resolution
pdb|3L45|A Chain A, A Joint Neutron And X-Ray Structure Of Oxidized Amicyanin
Length = 105
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 18/96 (18%)
Query: 77 DDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGP- 135
D + + V G+ + + N PHNV F +GV E L GP
Sbjct: 24 DIAKMKYETPELHVKVGDTVTWINREAMPHNVHFV-----AGV-------LGEAALKGPM 71
Query: 136 ---GETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 168
+ Y++T TE GTY ++C+PH M G+V V
Sbjct: 72 MKKEQAYSLTFTEAGTYDYHCTPH--PFMRGKVVVE 105
>pdb|1MDA|A Chain A, Crystal Structure Of An Electron-Transfer Complex Between
Methylamine Dehydrogenase And Amicyanin
pdb|1MDA|B Chain B, Crystal Structure Of An Electron-Transfer Complex Between
Methylamine Dehydrogenase And Amicyanin
Length = 103
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 18/96 (18%)
Query: 77 DDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGP- 135
D + + V G+ + + N PHNV F +GV E L GP
Sbjct: 22 DIAKMKYETPELHVKVGDTVTWINREAMPHNVHFV-----AGV-------LGEAALKGPM 69
Query: 136 ---GETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 168
+ Y++T TE GTY ++C+PH M G+V V
Sbjct: 70 MKKEQAYSLTFTEAGTYDYHCTPH--PFMRGKVVVE 103
>pdb|2IDQ|A Chain A, Structure Of M98a Mutant Of Amicyanin, Cu(Ii)
pdb|2IDS|A Chain A, Structure Of M98a Mutant Of Amicyanin, Cu(I)
Length = 105
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 18/96 (18%)
Query: 77 DDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGP- 135
D + + V G+ + + N PHNV F +GV E L GP
Sbjct: 24 DIAKMKYETPELHVKVGDTVTWINREAMPHNVHFV-----AGV-------LGEAALKGPM 71
Query: 136 ---GETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 168
+ Y++T TE GTY ++C+PH A G+V V
Sbjct: 72 MKKEQAYSLTFTEAGTYDYHCTPHPFAR--GKVVVE 105
>pdb|3RYM|A Chain A, Structure Of Oxidized M98k Mutant Of Amicyanin
pdb|3RYM|B Chain B, Structure Of Oxidized M98k Mutant Of Amicyanin
pdb|3RYM|C Chain C, Structure Of Oxidized M98k Mutant Of Amicyanin
pdb|3RYM|D Chain D, Structure Of Oxidized M98k Mutant Of Amicyanin
Length = 105
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 16/84 (19%)
Query: 77 DDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGP- 135
D + + V G+ + + N PHNV F +GV E L GP
Sbjct: 24 DIAKMKYETPELHVKVGDTVTWINREAMPHNVHFV-----AGV-------LGEAALKGPM 71
Query: 136 ---GETYAVTLTEKGTYSFYCSPH 156
+ Y++T TE GTY ++C+PH
Sbjct: 72 MKKEQAYSLTFTEAGTYDYHCTPH 95
>pdb|3IE9|A Chain A, Structure Of Oxidized M98l Mutant Of Amicyanin
pdb|3IEA|A Chain A, Structure Of Reduced M98l Mutant Of Amicyanin
Length = 105
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 16/84 (19%)
Query: 77 DDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGP- 135
D + + V G+ + + N PHNV F +GV E L GP
Sbjct: 24 DIAKMKYETPELHVKVGDTVTWINREAMPHNVHFV-----AGV-------LGEAALKGPM 71
Query: 136 ---GETYAVTLTEKGTYSFYCSPH 156
+ Y++T TE GTY ++C+PH
Sbjct: 72 MKKEQAYSLTFTEAGTYDYHCTPH 95
>pdb|2IDT|A Chain A, Structure Of M98q Mutant Of Amicyanin, Cu(Ii)
pdb|2IDU|A Chain A, Structure Of M98q Mutant Of Amicyanin, Cu(I)
Length = 105
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 16/84 (19%)
Query: 77 DDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGP- 135
D + + V G+ + + N PHNV F +GV E L GP
Sbjct: 24 DIAKMKYETPELHVKVGDTVTWINREAXPHNVHFV-----AGV-------LGEAALKGPM 71
Query: 136 ---GETYAVTLTEKGTYSFYCSPH 156
+ Y++T TE GTY ++C+PH
Sbjct: 72 MKKEQAYSLTFTEAGTYDYHCTPH 95
>pdb|2HX7|A Chain A, Crystal Structure Of Cu(ii) Azurin With The Metal-binding
Loop Sequence "ctfpghsalm" Replaced With "csphqgagm"
pdb|2HX7|B Chain B, Crystal Structure Of Cu(ii) Azurin With The Metal-binding
Loop Sequence "ctfpghsalm" Replaced With "csphqgagm"
pdb|2HX8|A Chain A, Crystal Structure Of Cu(I) Azurin With The Metal-Binding
Loop Sequence "ctfpghsalm" Replaced With "csphqgagm", At
Ph5
pdb|2HX8|B Chain B, Crystal Structure Of Cu(I) Azurin With The Metal-Binding
Loop Sequence "ctfpghsalm" Replaced With "csphqgagm", At
Ph5
pdb|2HX9|A Chain A, Crystal Structure Of Cu(i) Azurin With The Metal-binding
Loop Sequence "ctfpghsalm" Replaced With "csphqgagm", At
Ph4
pdb|2HX9|B Chain B, Crystal Structure Of Cu(i) Azurin With The Metal-binding
Loop Sequence "ctfpghsalm" Replaced With "csphqgagm", At
Ph4
pdb|2HXA|A Chain A, Crystal Structure Of Cu(I) Azurin With The Metal-Binding
Loop Sequence "ctfpghsalm" Replaced With "csphqgagm", At
Ph3.5
pdb|2HXA|B Chain B, Crystal Structure Of Cu(I) Azurin With The Metal-Binding
Loop Sequence "ctfpghsalm" Replaced With "csphqgagm", At
Ph3.5
Length = 127
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Query: 132 LNGPGETYAVT-----LTEKGTYSFYCSPHQGAGMVGQVTV 167
L G GE +VT L E Y F+CSPHQGAGM G +T+
Sbjct: 86 LIGSGEKDSVTFDVSKLKEGEQYMFFCSPHQGAGMKGTLTL 126
>pdb|2QDV|A Chain A, Structure Of The Cu(Ii) Form Of The M51a Mutant Of
Amicyanin
pdb|2QDW|A Chain A, Structure Of Cu(I) Form Of The M51a Mutant Of Amicyanin
Length = 106
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 18/86 (20%)
Query: 87 SFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGP----GETYAVT 142
V G+ + + N PHNV F +GV E L GP + Y++T
Sbjct: 35 ELHVKVGDTVTWINREAAPHNVHFV-----AGV-------LGEAALKGPMMKKEQAYSLT 82
Query: 143 LTEKGTYSFYCSPHQGAGMVGQVTVN 168
TE GTY ++C+PH M G+V V
Sbjct: 83 FTEAGTYDYHCTPH--PFMRGKVVVE 106
>pdb|1PMY|A Chain A, Refined Crystal Structure Of Pseudoazurin From
Methylobacterium Extorquens Am1 At 1.5 Angstroms
Resolution
Length = 123
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 12/99 (12%)
Query: 70 IEVLLGGDDGSLAFVPSSFSVSSGEKIVF-KNNAGFPHNVVFDEDEIPSGVDVSKISMST 128
+++L G G + F P+ + G+ I F + G HNV + P G D K ++
Sbjct: 5 VKMLNSGPGGMMVFDPALVRLKPGDSIKFLPTDKG--HNVETIKGMAPDGADYVKTTV-- 60
Query: 129 EDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 167
G+ V ++G Y F C+PH GMV V V
Sbjct: 61 -------GQEAVVKFDKEGVYGFKCAPHYMMGMVALVVV 92
>pdb|1SF3|A Chain A, Structure Of The Reduced Form Of The P94a Mutant Of
Amicyanin
Length = 105
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 18/96 (18%)
Query: 77 DDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGP- 135
D + + V G+ + + N PHNV F +GV E L GP
Sbjct: 24 DIAKMKYETPELHVKVGDTVTWINREAMPHNVHF-----VAGV-------LGEAALKGPM 71
Query: 136 ---GETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 168
+ Y++T TE GTY ++C+ H M G+V V
Sbjct: 72 MKKEQAYSLTFTEAGTYDYHCTAH--PFMRGKVVVE 105
>pdb|1SF5|A Chain A, Structure Of Oxidized State Of The P94a Mutant Of
Amicyanin
Length = 105
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 18/96 (18%)
Query: 77 DDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGP- 135
D + + V G+ + + N PHNV F +GV E L GP
Sbjct: 24 DIAKMKYETPELHVKVGDTVTWINREAXPHNVHF-----VAGV-------LGEAALKGPM 71
Query: 136 ---GETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 168
+ Y++T TE GTY ++C+ H M G+V V
Sbjct: 72 MKKEQAYSLTFTEAGTYDYHCTAH--PFMRGKVVVE 105
>pdb|2GB2|A Chain A, The P52g Mutant Of Amicyanin In The Cu(Ii) State.
pdb|2GBA|A Chain A, Reduced Cu(I) Form At Ph 4 Of P52g Mutant Of Amicyanin
Length = 105
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 18/96 (18%)
Query: 77 DDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGP- 135
D + + V G+ + + N HNV F +GV E L GP
Sbjct: 24 DIAKMKYETPELHVKVGDTVTWINREAMGHNVHF-----VAGV-------LGEAALKGPM 71
Query: 136 ---GETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 168
+ Y++T TE GTY ++C+PH M G+V V
Sbjct: 72 MKKEQAYSLTFTEAGTYDYHCTPH--PFMRGKVVVE 105
>pdb|1SFD|A Chain A, Oxidized Form Of Amicyanin Mutant P94f
pdb|1SFD|B Chain B, Oxidized Form Of Amicyanin Mutant P94f
pdb|1SFH|A Chain A, Reduced State Of Amicyanin Mutant P94f
pdb|1SFH|B Chain B, Reduced State Of Amicyanin Mutant P94f
Length = 105
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 18/96 (18%)
Query: 77 DDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGP- 135
D + + V G+ + + N PHNV F +GV E L GP
Sbjct: 24 DIAKMKYETPELHVKVGDTVTWINREAMPHNVHF-----VAGV-------LGEAALKGPM 71
Query: 136 ---GETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 168
+ Y++T TE GTY ++C+ H M G+V V
Sbjct: 72 MKKEQAYSLTFTEAGTYDYHCTFH--PFMRGKVVVE 105
>pdb|3EF4|A Chain A, Crystal Structure Of Native Pseudoazurin From
Hyphomicrobium Denitrificans
pdb|3EF4|B Chain B, Crystal Structure Of Native Pseudoazurin From
Hyphomicrobium Denitrificans
pdb|3EF4|C Chain C, Crystal Structure Of Native Pseudoazurin From
Hyphomicrobium Denitrificans
Length = 124
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 34/88 (38%), Gaps = 10/88 (11%)
Query: 80 SLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETY 139
++ F P V +G+ + F HN + P GV K S E + N E
Sbjct: 16 TMVFQPGFVKVEAGDTVKFVPTDK-SHNAESVREVWPEGVAPVKGGFSKEVVFNAEKE-- 72
Query: 140 AVTLTEKGTYSFYCSPHQGAGMVGQVTV 167
G Y C+PH G GMV V V
Sbjct: 73 -------GLYVLKCAPHYGMGMVVLVQV 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.130 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,067,063
Number of Sequences: 62578
Number of extensions: 151586
Number of successful extensions: 335
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 255
Number of HSP's gapped (non-prelim): 59
length of query: 168
length of database: 14,973,337
effective HSP length: 92
effective length of query: 76
effective length of database: 9,216,161
effective search space: 700428236
effective search space used: 700428236
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 48 (23.1 bits)