Query 030950
Match_columns 168
No_of_seqs 213 out of 1110
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 07:00:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030950.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030950hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK02710 plastocyanin; Provisi 100.0 8.4E-28 1.8E-32 179.0 15.5 96 63-168 24-119 (119)
2 TIGR02656 cyanin_plasto plasto 100.0 4.2E-28 9.1E-33 175.1 12.5 99 70-168 1-99 (99)
3 PF00127 Copper-bind: Copper b 99.9 4.5E-27 9.7E-32 169.5 10.0 98 71-168 2-99 (99)
4 COG3794 PetE Plastocyanin [Ene 99.9 8.8E-26 1.9E-30 170.1 12.2 91 69-168 37-127 (128)
5 TIGR03102 halo_cynanin halocya 99.9 7.6E-24 1.7E-28 157.3 12.9 92 67-168 21-115 (115)
6 TIGR02375 pseudoazurin pseudoa 99.9 1.8E-23 3.8E-28 155.6 11.7 82 77-168 6-87 (116)
7 TIGR02657 amicyanin amicyanin. 99.9 3.9E-22 8.5E-27 139.6 11.0 79 80-168 5-83 (83)
8 PF13473 Cupredoxin_1: Cupredo 99.8 2.6E-19 5.7E-24 129.6 7.6 83 65-167 18-104 (104)
9 TIGR03096 nitroso_cyanin nitro 99.6 3.2E-14 7E-19 108.2 10.6 75 79-167 54-133 (135)
10 TIGR02695 azurin azurin. Azuri 99.5 5.3E-14 1.2E-18 105.4 7.5 94 71-167 2-125 (125)
11 COG4454 Uncharacterized copper 99.5 1.5E-13 3.2E-18 106.3 9.9 102 67-168 43-157 (158)
12 TIGR03095 rusti_cyanin rusticy 99.4 6.6E-12 1.4E-16 97.0 10.9 99 68-168 26-148 (148)
13 PRK10378 inactive ferrous ion 99.3 1.4E-11 3.1E-16 107.6 10.9 85 68-168 30-116 (375)
14 PLN03148 Blue copper-like prot 99.2 9E-11 1.9E-15 92.3 9.1 96 65-168 16-118 (167)
15 PRK02888 nitrous-oxide reducta 99.1 3.2E-10 6.9E-15 104.3 10.2 84 67-168 538-633 (635)
16 COG3241 Azurin [Energy product 98.8 1.3E-08 2.8E-13 76.4 6.3 98 67-167 22-149 (151)
17 TIGR02376 Cu_nitrite_red nitri 98.6 1.6E-07 3.4E-12 80.4 9.3 75 86-168 59-145 (311)
18 TIGR01480 copper_res_A copper- 98.6 5.5E-07 1.2E-11 83.1 12.7 80 86-168 76-161 (587)
19 PF07732 Cu-oxidase_3: Multico 98.6 1.8E-07 3.8E-12 69.5 7.1 82 86-168 26-114 (117)
20 PF00116 COX2: Cytochrome C ox 98.6 4.1E-07 8.8E-12 67.9 9.0 70 81-167 41-119 (120)
21 PF06525 SoxE: Sulfocyanin (So 98.6 5E-07 1.1E-11 72.6 9.7 82 86-167 86-185 (196)
22 PF02298 Cu_bind_like: Plastoc 98.6 6E-08 1.3E-12 68.3 3.8 68 87-161 16-85 (85)
23 TIGR03094 sulfo_cyanin sulfocy 98.4 2.3E-06 5.1E-11 68.1 9.5 82 86-167 85-184 (195)
24 PLN02604 oxidoreductase 98.4 5.8E-06 1.3E-10 76.0 12.6 77 86-168 55-143 (566)
25 TIGR01480 copper_res_A copper- 98.2 8.2E-06 1.8E-10 75.5 8.9 103 66-168 471-587 (587)
26 PRK10965 multicopper oxidase; 98.2 3.3E-05 7.2E-10 70.5 12.7 77 86-168 77-164 (523)
27 TIGR02866 CoxB cytochrome c ox 98.1 2.3E-05 5E-10 63.1 9.9 82 67-167 88-190 (201)
28 PRK10883 FtsI repressor; Provi 98.1 3E-05 6.6E-10 69.9 10.8 77 86-168 77-164 (471)
29 COG1622 CyoA Heme/copper-type 98.1 3.7E-05 8E-10 64.2 9.7 68 85-168 136-211 (247)
30 PLN02354 copper ion binding / 98.0 8.6E-05 1.9E-09 68.3 12.9 79 83-168 55-145 (552)
31 PLN02835 oxidoreductase 97.9 0.00022 4.8E-09 65.4 13.4 77 85-168 59-147 (539)
32 TIGR03388 ascorbase L-ascorbat 97.9 8.7E-05 1.9E-09 68.0 9.2 81 82-168 28-120 (541)
33 PLN00044 multi-copper oxidase- 97.8 0.00028 6.1E-09 65.5 11.5 77 85-168 59-147 (596)
34 PLN02191 L-ascorbate oxidase 97.7 0.00024 5.1E-09 65.7 9.5 79 84-168 52-142 (574)
35 TIGR03389 laccase laccase, pla 97.7 0.00031 6.7E-09 64.3 9.9 80 83-168 31-121 (539)
36 PLN02168 copper ion binding / 97.7 0.00027 5.9E-09 65.0 9.4 77 85-168 56-144 (545)
37 PF07731 Cu-oxidase_2: Multico 97.5 0.00028 6E-09 52.5 6.4 87 82-168 30-135 (138)
38 PLN02991 oxidoreductase 97.5 0.002 4.3E-08 59.3 12.3 78 84-168 57-146 (543)
39 TIGR03390 ascorbOXfungal L-asc 97.4 0.0012 2.7E-08 60.4 9.5 81 82-168 35-128 (538)
40 PLN02792 oxidoreductase 97.3 0.00088 1.9E-08 61.5 8.3 79 82-167 43-133 (536)
41 MTH00047 COX2 cytochrome c oxi 97.3 0.0017 3.6E-08 52.4 8.3 66 86-167 116-189 (194)
42 COG2132 SufI Putative multicop 97.2 0.0064 1.4E-07 54.3 11.7 83 83-168 61-149 (451)
43 MTH00140 COX2 cytochrome c oxi 97.0 0.0032 7E-08 51.7 8.0 65 86-167 140-213 (228)
44 TIGR01433 CyoA cytochrome o ub 97.0 0.0062 1.3E-07 50.2 9.1 84 68-167 113-212 (226)
45 COG4263 NosZ Nitrous oxide red 96.9 0.002 4.4E-08 58.1 5.8 72 81-168 553-636 (637)
46 PTZ00047 cytochrome c oxidase 96.8 0.011 2.4E-07 46.5 8.4 67 85-167 72-146 (162)
47 MTH00008 COX2 cytochrome c oxi 96.6 0.012 2.6E-07 48.5 8.3 65 86-167 140-213 (228)
48 PRK10965 multicopper oxidase; 96.5 0.0097 2.1E-07 54.5 7.8 88 80-168 418-523 (523)
49 MTH00098 COX2 cytochrome c oxi 96.5 0.016 3.5E-07 47.7 8.3 66 86-167 140-213 (227)
50 MTH00129 COX2 cytochrome c oxi 96.4 0.019 4E-07 47.4 8.2 66 86-167 140-213 (230)
51 KOG1263 Multicopper oxidases [ 96.4 0.015 3.2E-07 53.9 8.3 75 85-168 58-146 (563)
52 TIGR01432 QOXA cytochrome aa3 96.4 0.013 2.9E-07 47.7 7.2 83 69-167 105-203 (217)
53 MTH00051 COX2 cytochrome c oxi 96.4 0.017 3.6E-07 47.8 7.6 65 86-167 144-217 (234)
54 MTH00023 COX2 cytochrome c oxi 96.3 0.024 5.3E-07 47.0 8.5 66 86-167 151-224 (240)
55 MTH00139 COX2 cytochrome c oxi 96.3 0.027 5.9E-07 46.2 8.6 66 86-167 140-213 (226)
56 MTH00168 COX2 cytochrome c oxi 96.3 0.022 4.8E-07 46.8 8.0 66 86-167 140-213 (225)
57 MTH00154 COX2 cytochrome c oxi 96.3 0.022 4.8E-07 46.9 7.8 66 86-167 140-213 (227)
58 PRK10525 cytochrome o ubiquino 96.2 0.032 7E-07 48.2 8.9 85 67-167 124-224 (315)
59 COG2132 SufI Putative multicop 96.2 0.016 3.4E-07 51.9 6.9 89 80-168 349-449 (451)
60 MTH00038 COX2 cytochrome c oxi 96.2 0.029 6.2E-07 46.3 8.0 66 86-167 140-213 (229)
61 MTH00117 COX2 cytochrome c oxi 96.1 0.033 7.1E-07 45.9 7.8 66 86-167 140-213 (227)
62 PRK10883 FtsI repressor; Provi 95.8 0.078 1.7E-06 48.0 9.8 102 66-168 350-468 (471)
63 MTH00076 COX2 cytochrome c oxi 95.7 0.054 1.2E-06 44.7 7.6 67 85-167 139-213 (228)
64 MTH00185 COX2 cytochrome c oxi 95.7 0.073 1.6E-06 44.0 8.2 66 86-167 140-213 (230)
65 MTH00080 COX2 cytochrome c oxi 95.4 0.08 1.7E-06 43.8 7.6 66 86-167 143-216 (231)
66 MTH00027 COX2 cytochrome c oxi 95.3 0.12 2.6E-06 43.5 8.4 66 86-167 174-247 (262)
67 COG4633 Plastocyanin domain co 95.2 0.054 1.2E-06 44.9 5.8 73 81-168 92-168 (272)
68 TIGR02376 Cu_nitrite_red nitri 94.4 0.12 2.7E-06 44.2 6.5 85 83-168 200-296 (311)
69 PF00394 Cu-oxidase: Multicopp 94.1 0.14 3E-06 39.3 5.6 69 84-154 58-136 (159)
70 PLN02835 oxidoreductase 93.9 0.35 7.7E-06 44.6 8.7 82 86-168 411-512 (539)
71 PF10518 TAT_signal: TAT (twin 89.6 0.46 1E-05 26.1 2.7 20 40-59 1-20 (26)
72 PLN02792 oxidoreductase 89.4 2.6 5.7E-05 38.9 9.0 82 86-168 403-504 (536)
73 PF05753 TRAP_beta: Translocon 88.3 4 8.7E-05 32.5 8.3 55 97-151 45-105 (181)
74 COG4263 NosZ Nitrous oxide red 88.2 1.2 2.6E-05 40.8 5.7 73 68-154 532-609 (637)
75 PLN02168 copper ion binding / 87.1 4 8.7E-05 37.8 8.7 81 86-167 415-515 (545)
76 TIGR03389 laccase laccase, pla 86.9 4 8.6E-05 37.6 8.5 37 131-167 479-519 (539)
77 PLN02354 copper ion binding / 86.7 4.6 0.0001 37.5 8.9 82 85-167 417-518 (552)
78 PLN02991 oxidoreductase 84.9 6.8 0.00015 36.3 9.0 38 131-168 470-511 (543)
79 PRK05089 cytochrome C oxidase 84.7 19 0.00042 29.0 11.2 36 68-103 63-107 (188)
80 PF10633 NPCBM_assoc: NPCBM-as 84.7 1.2 2.6E-05 30.0 3.1 60 90-152 1-72 (78)
81 TIGR03388 ascorbase L-ascorbat 82.5 6.2 0.00013 36.4 7.7 37 131-167 483-523 (541)
82 PF14874 PapD-like: Flagellar- 82.1 14 0.00031 25.5 7.9 66 81-150 4-81 (102)
83 PTZ00128 cytochrome c oxidase 76.9 42 0.00092 27.9 10.9 36 68-103 107-151 (232)
84 PLN02191 L-ascorbate oxidase 74.1 24 0.00053 32.8 9.0 36 131-166 506-545 (574)
85 PF10989 DUF2808: Protein of u 73.2 15 0.00033 27.8 6.3 23 132-154 98-126 (146)
86 COG1470 Predicted membrane pro 72.6 9.9 0.00021 34.9 5.8 69 86-154 276-357 (513)
87 COG4454 Uncharacterized copper 72.3 7.8 0.00017 30.4 4.5 36 82-120 110-147 (158)
88 PF00801 PKD: PKD domain; Int 71.9 19 0.00041 23.2 5.8 23 132-154 37-59 (69)
89 PLN00044 multi-copper oxidase- 71.8 19 0.0004 33.9 7.7 38 131-168 493-534 (596)
90 PF12690 BsuPI: Intracellular 71.2 15 0.00033 25.3 5.4 22 130-151 53-80 (82)
91 TIGR02811 formate_TAT formate 69.9 6.5 0.00014 26.3 3.2 20 38-57 6-25 (66)
92 PF08802 CytB6-F_Fe-S: Cytochr 69.7 8.6 0.00019 23.2 3.3 21 37-57 2-22 (39)
93 TIGR03769 P_ac_wall_RPT actino 67.8 4.2 9.1E-05 24.6 1.7 14 140-153 6-19 (41)
94 TIGR03390 ascorbOXfungal L-asc 66.6 8.9 0.00019 35.3 4.4 27 142-168 504-532 (538)
95 TIGR01451 B_ant_repeat conserv 66.0 11 0.00025 23.7 3.6 33 87-120 5-42 (53)
96 PF05938 Self-incomp_S1: Plant 65.3 42 0.00091 23.8 7.0 30 131-161 29-60 (110)
97 KOG4767 Cytochrome c oxidase, 65.1 27 0.00059 28.6 6.3 64 86-165 143-214 (231)
98 PLN02604 oxidoreductase 63.7 11 0.00023 35.1 4.3 37 131-167 506-546 (566)
99 smart00089 PKD Repeats in poly 63.5 26 0.00057 22.8 5.2 20 135-154 43-62 (79)
100 PF04442 CtaG_Cox11: Cytochrom 62.9 34 0.00073 26.6 6.4 38 66-103 34-80 (152)
101 COG3175 COX11 Cytochrome oxida 62.4 45 0.00097 26.9 7.0 35 69-103 63-106 (195)
102 PRK13254 cytochrome c-type bio 61.8 72 0.0016 24.6 11.5 35 84-119 61-96 (148)
103 KOG1263 Multicopper oxidases [ 61.6 12 0.00026 34.9 4.3 40 129-168 493-536 (563)
104 TIGR01409 TAT_signal_seq Tat ( 57.9 9.4 0.0002 21.1 1.9 19 41-59 1-19 (29)
105 PF12988 DUF3872: Domain of un 56.7 10 0.00022 29.1 2.4 45 49-98 4-52 (137)
106 PRK05461 apaG CO2+/MG2+ efflux 56.6 69 0.0015 24.0 7.0 12 131-142 74-85 (127)
107 PRK13165 cytochrome c-type bio 55.7 99 0.0022 24.3 11.9 44 70-119 58-103 (160)
108 PF04314 DUF461: Protein of un 52.0 86 0.0019 22.4 8.3 55 78-151 52-109 (110)
109 PF03100 CcmE: CcmE; InterPro 51.5 96 0.0021 23.1 7.1 35 84-119 60-96 (131)
110 TIGR03786 strep_pil_rpt strept 51.5 10 0.00023 25.0 1.6 15 140-154 3-17 (64)
111 cd00407 Urease_beta Urease bet 50.1 53 0.0011 23.9 5.1 26 79-104 4-32 (101)
112 PRK13150 cytochrome c-type bio 50.1 1.2E+02 0.0027 23.7 11.8 35 84-119 67-103 (159)
113 TIGR00192 urease_beta urease, 49.6 52 0.0011 23.9 5.1 26 79-104 4-32 (101)
114 PRK13202 ureB urease subunit b 49.0 53 0.0012 24.0 5.0 26 79-104 4-33 (104)
115 TIGR02745 ccoG_rdxA_fixG cytoc 46.7 1.9E+02 0.004 26.2 9.3 71 68-143 324-395 (434)
116 PLN03070 photosystem I reactio 45.9 15 0.00032 27.8 1.8 20 1-22 1-20 (128)
117 PRK13203 ureB urease subunit b 45.3 63 0.0014 23.5 4.9 26 79-104 4-32 (102)
118 PRK13204 ureB urease subunit b 45.2 61 0.0013 25.4 5.1 26 79-104 27-55 (159)
119 PF01345 DUF11: Domain of unkn 43.1 41 0.00089 22.1 3.6 33 86-119 33-70 (76)
120 PRK13474 cytochrome b6-f compl 42.3 38 0.00082 26.7 3.8 22 35-56 6-27 (178)
121 PF14801 GCD14_N: tRNA methylt 42.3 33 0.00072 22.1 2.8 24 90-113 6-29 (54)
122 PF12389 Peptidase_M73: Camely 38.0 1E+02 0.0022 25.1 5.6 16 88-103 59-78 (199)
123 PRK13205 ureB urease subunit b 35.9 1E+02 0.0022 24.2 5.1 25 79-103 4-31 (162)
124 cd08759 Type_III_cohesin_like 34.3 39 0.00085 26.5 2.6 30 80-109 2-31 (160)
125 PRK13201 ureB urease subunit b 34.2 1.2E+02 0.0025 23.3 5.1 25 79-103 4-31 (136)
126 PLN02289 ribulose-bisphosphate 33.6 25 0.00055 28.0 1.5 11 11-21 21-31 (176)
127 PRK13198 ureB urease subunit b 33.4 1.2E+02 0.0026 23.7 5.1 24 80-103 33-59 (158)
128 cd06555 ASCH_PF0470_like ASC-1 32.5 64 0.0014 23.6 3.4 32 64-103 14-45 (109)
129 PRK13838 conjugal transfer pil 32.4 66 0.0014 25.3 3.7 60 41-101 1-62 (176)
130 PF00699 Urease_beta: Urease b 32.0 1.7E+02 0.0037 21.3 5.4 27 79-105 3-32 (100)
131 KOG1948 Metalloproteinase-rela 31.9 2.2E+02 0.0047 28.7 7.6 23 132-154 151-173 (1165)
132 PF08400 phage_tail_N: Prophag 30.3 1.7E+02 0.0038 22.2 5.5 31 136-167 44-77 (134)
133 PF13617 Lipoprotein_19: YnbE- 30.1 1.1E+02 0.0023 20.1 3.7 19 56-74 6-24 (59)
134 PRK13159 cytochrome c-type bio 28.3 2.9E+02 0.0063 21.6 11.4 35 84-119 61-97 (155)
135 COG2822 Predicted periplasmic 27.6 8.6 0.00019 33.5 -2.2 77 64-154 27-105 (376)
136 PRK11901 hypothetical protein; 27.3 1.2E+02 0.0026 26.6 4.6 40 17-59 10-51 (327)
137 PF11614 FixG_C: IG-like fold 27.1 1.3E+02 0.0027 21.5 4.2 45 95-143 36-80 (118)
138 PF14310 Fn3-like: Fibronectin 27.1 73 0.0016 20.8 2.7 12 132-143 28-39 (71)
139 PF07705 CARDB: CARDB; InterP 26.8 82 0.0018 21.0 3.0 23 132-154 56-82 (101)
140 PRK13192 bifunctional urease s 25.7 1.5E+02 0.0032 24.4 4.6 22 83-104 117-141 (208)
141 PF10399 UCR_Fe-S_N: Ubiquitin 25.3 1.3E+02 0.0028 18.2 3.3 20 37-56 5-24 (41)
142 PRK13986 urease subunit alpha; 24.8 1.5E+02 0.0032 24.6 4.5 23 81-103 111-136 (225)
143 PF05506 DUF756: Domain of unk 24.6 2.3E+02 0.005 19.2 6.3 50 95-152 23-75 (89)
144 PF00018 SH3_1: SH3 domain; I 24.3 47 0.001 19.8 1.3 25 85-110 11-35 (48)
145 PF07653 SH3_2: Variant SH3 do 24.3 44 0.00095 20.6 1.1 16 84-99 12-27 (55)
146 PF04379 DUF525: Protein of un 23.3 2.6E+02 0.0056 19.6 5.1 12 131-142 57-68 (90)
147 COG0782 Uncharacterized conser 23.2 3.5E+02 0.0075 20.7 7.1 24 89-112 78-102 (151)
148 PF09394 Inhibitor_I42: Chagas 22.8 2.4E+02 0.0053 18.8 7.8 64 88-153 1-71 (92)
149 smart00326 SH3 Src homology 3 22.8 61 0.0013 18.9 1.6 19 84-102 15-33 (58)
150 PRK05015 aminopeptidase B; Pro 22.5 2.5E+02 0.0053 25.5 5.9 25 79-103 249-274 (424)
151 COG4991 Uncharacterized protei 22.3 1.4E+02 0.003 23.4 3.7 59 39-99 7-67 (155)
152 PF14604 SH3_9: Variant SH3 do 22.3 58 0.0012 19.9 1.4 17 85-101 10-26 (49)
153 PF05899 Cupin_3: Protein of u 22.0 1.6E+02 0.0035 19.4 3.7 9 90-98 56-64 (74)
154 cd03171 SORL_Dfx_classI Supero 21.8 2.5E+02 0.0054 19.1 4.6 59 87-157 14-75 (78)
155 PRK06764 hypothetical protein; 21.8 1.4E+02 0.0031 21.2 3.4 17 138-154 75-91 (105)
156 PF04225 OapA: Opacity-associa 21.0 2.6E+02 0.0057 19.2 4.7 12 89-100 42-53 (85)
157 PRK09838 periplasmic copper-bi 21.0 2.1E+02 0.0046 21.0 4.4 18 132-149 88-106 (115)
158 PRK09918 putative fimbrial cha 20.7 4.7E+02 0.01 21.2 8.3 13 131-143 78-90 (230)
159 cd00433 Peptidase_M17 Cytosol 20.5 3.4E+02 0.0073 24.8 6.5 25 79-103 298-323 (468)
160 PF06051 DUF928: Domain of Unk 20.5 4.4E+02 0.0094 20.8 7.0 22 127-154 81-102 (189)
161 PRK13709 conjugal transfer nic 20.4 94 0.002 33.2 3.1 20 83-102 1328-1347(1747)
162 PRK10882 hydrogenase 2 protein 20.3 66 0.0014 28.0 1.8 18 41-58 1-18 (328)
163 PF12338 RbcS: Ribulose-1,5-bi 20.0 45 0.00097 20.8 0.5 12 10-21 23-34 (45)
No 1
>PRK02710 plastocyanin; Provisional
Probab=99.96 E-value=8.4e-28 Score=179.04 Aligned_cols=96 Identities=45% Similarity=0.850 Sum_probs=83.2
Q ss_pred hcccceEEEEEEeecCCCceEeCCeEEEcCCCEEEEEeCCCCCeeEEEccCCCCCCccccccccccCccccCCCceEEEE
Q 030950 63 LASNAMAIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVT 142 (168)
Q Consensus 63 laa~a~t~~V~~~~~~g~~~F~P~~itV~~GdtV~f~N~d~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t~svt 142 (168)
.++.+.+++|+|+.+++++.|+|+.|+|++||+|+|+|.+..+||++++... .. .+.++.+.||++++++
T Consensus 24 ~~a~a~~~~V~~~~~~~~~~F~P~~i~v~~Gd~V~~~N~~~~~H~v~~~~~~---~~-------~~~~~~~~pg~t~~~t 93 (119)
T PRK02710 24 SSASAETVEVKMGSDAGMLAFEPSTLTIKAGDTVKWVNNKLAPHNAVFDGAK---EL-------SHKDLAFAPGESWEET 93 (119)
T ss_pred cccccceEEEEEccCCCeeEEeCCEEEEcCCCEEEEEECCCCCceEEecCCc---cc-------cccccccCCCCEEEEE
Confidence 4557889999999877889999999999999999999999899999986421 11 1344567899999999
Q ss_pred eCCceeEEEEcCCCCCCCcEEEEEeC
Q 030950 143 LTEKGTYSFYCSPHQGAGMVGQVTVN 168 (168)
Q Consensus 143 F~~pG~Y~y~C~~H~~~GM~G~I~V~ 168 (168)
|++||+|.|||++|+++||+|+|+|+
T Consensus 94 F~~~G~y~y~C~~H~~~gM~G~I~V~ 119 (119)
T PRK02710 94 FSEAGTYTYYCEPHRGAGMVGKITVE 119 (119)
T ss_pred ecCCEEEEEEcCCCccCCcEEEEEEC
Confidence 99999999999999999999999996
No 2
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=99.96 E-value=4.2e-28 Score=175.06 Aligned_cols=99 Identities=53% Similarity=0.998 Sum_probs=85.7
Q ss_pred EEEEEeecCCCceEeCCeEEEcCCCEEEEEeCCCCCeeEEEccCCCCCCccccccccccCccccCCCceEEEEeCCceeE
Q 030950 70 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTY 149 (168)
Q Consensus 70 ~~V~~~~~~g~~~F~P~~itV~~GdtV~f~N~d~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t~svtF~~pG~Y 149 (168)
++|+|+.++|+|.|+|+.|+|++||+|+|+|++..+||+++.....|.+.......+.++++.+.||++++++|+.+|+|
T Consensus 1 ~~v~~g~~~g~~~F~P~~i~v~~G~~V~~~N~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~t~~~tF~~~G~y 80 (99)
T TIGR02656 1 VTVKMGADKGALVFEPAKISIAAGDTVEWVNNKGGPHNVVFDEDAVPAGVKELAKSLSHKDLLNSPGESYEVTFSTPGTY 80 (99)
T ss_pred CEEEEecCCCceeEeCCEEEECCCCEEEEEECCCCCceEEECCCCCccchhhhcccccccccccCCCCEEEEEeCCCEEE
Confidence 57899988899999999999999999999999989999999876666554322223445667789999999999999999
Q ss_pred EEEcCCCCCCCcEEEEEeC
Q 030950 150 SFYCSPHQGAGMVGQVTVN 168 (168)
Q Consensus 150 ~y~C~~H~~~GM~G~I~V~ 168 (168)
.|+|.+|+++||+|+|+|+
T Consensus 81 ~y~C~~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 81 TFYCEPHRGAGMVGKITVE 99 (99)
T ss_pred EEEcCCccccCCEEEEEEC
Confidence 9999999999999999996
No 3
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=99.94 E-value=4.5e-27 Score=169.47 Aligned_cols=98 Identities=45% Similarity=0.812 Sum_probs=82.3
Q ss_pred EEEEeecCCCceEeCCeEEEcCCCEEEEEeCCCCCeeEEEccCCCCCCccccccccccCccccCCCceEEEEeCCceeEE
Q 030950 71 EVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYS 150 (168)
Q Consensus 71 ~V~~~~~~g~~~F~P~~itV~~GdtV~f~N~d~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t~svtF~~pG~Y~ 150 (168)
+|.++.+.+++.|+|+.|+|++||+|+|+|.+..+||+++..+..|.+.+.........+..+.+|++++++|+++|+|.
T Consensus 2 ~v~~~~~~~~~~F~P~~i~V~~G~tV~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~~~G~y~ 81 (99)
T PF00127_consen 2 TVSVTVDMGDMAFDPSEITVKAGDTVTFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFTKPGTYE 81 (99)
T ss_dssp EEEEEETTSTSSEESSEEEEETTEEEEEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEESSEEEE
T ss_pred EEEEEEeCCccEEeCCEEEECCCCEEEEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeCCCeEEE
Confidence 45555556789999999999999999999988899999999876666665544322223456889999999999999999
Q ss_pred EEcCCCCCCCcEEEEEeC
Q 030950 151 FYCSPHQGAGMVGQVTVN 168 (168)
Q Consensus 151 y~C~~H~~~GM~G~I~V~ 168 (168)
|+|++|+++||+|+|+||
T Consensus 82 y~C~PH~~~GM~G~i~V~ 99 (99)
T PF00127_consen 82 YYCTPHYEAGMVGTIIVE 99 (99)
T ss_dssp EEETTTGGTTSEEEEEEE
T ss_pred EEcCCCcccCCEEEEEEC
Confidence 999999999999999996
No 4
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=99.93 E-value=8.8e-26 Score=170.15 Aligned_cols=91 Identities=32% Similarity=0.613 Sum_probs=77.6
Q ss_pred EEEEEEeecCCCceEeCCeEEEcCCCEEEEEeCCCCCeeEEEccCCCCCCccccccccccCccccCCCceEEEEeCCcee
Q 030950 69 AIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGT 148 (168)
Q Consensus 69 t~~V~~~~~~g~~~F~P~~itV~~GdtV~f~N~d~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t~svtF~~pG~ 148 (168)
...+.+..+++.+.|+|+.++|++||+|+|+|+|...||++..++..|.+. ..+...+|+++++||++||.
T Consensus 37 ~~~~~~~~~~~~~vF~PA~v~v~pGDTVtw~~~d~~~Hnv~~~~~~~~~g~---------~~~~~~~~~s~~~Tfe~~G~ 107 (128)
T COG3794 37 VASVNKGVDIGAMVFEPAEVTVKPGDTVTWVNTDSVGHNVTAVGGMDPEGS---------GTLKAGINESFTHTFETPGE 107 (128)
T ss_pred ceeeeeeccCcceeEcCcEEEECCCCEEEEEECCCCCceEEEeCCCCcccc---------cccccCCCcceEEEecccce
Confidence 566666767778999999999999999999999988999999876434332 22345678999999999999
Q ss_pred EEEEcCCCCCCCcEEEEEeC
Q 030950 149 YSFYCSPHQGAGMVGQVTVN 168 (168)
Q Consensus 149 Y~y~C~~H~~~GM~G~I~V~ 168 (168)
|.|||+||+++||+|+|+|+
T Consensus 108 Y~Y~C~PH~~~gM~G~IvV~ 127 (128)
T COG3794 108 YTYYCTPHPGMGMKGKIVVG 127 (128)
T ss_pred EEEEeccCCCCCcEEEEEeC
Confidence 99999999999999999995
No 5
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=99.91 E-value=7.6e-24 Score=157.29 Aligned_cols=92 Identities=35% Similarity=0.623 Sum_probs=76.6
Q ss_pred ceEEEEEEe--ecCCCceEeCCeEEEcCCCEEEEEeCC-CCCeeEEEccCCCCCCccccccccccCccccCCCceEEEEe
Q 030950 67 AMAIEVLLG--GDDGSLAFVPSSFSVSSGEKIVFKNNA-GFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTL 143 (168)
Q Consensus 67 a~t~~V~~~--~~~g~~~F~P~~itV~~GdtV~f~N~d-~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t~svtF 143 (168)
+..++|+|+ +++++|.|+|..|+|++||+|+|+|++ ..+||+++.+.. .++ .++....+|++++++|
T Consensus 21 ~~~~~v~~G~~~~~g~~~F~P~~ltV~~GdTVtw~~~~d~~~HnV~s~~~~---~f~-------s~~~~~~~G~t~s~Tf 90 (115)
T TIGR03102 21 QDEVTVDVGAEANGGGFAFDPPAIRVDPGTTVVWEWTGEGGGHNVVSDGDG---DLD-------ESERVSEEGTTYEHTF 90 (115)
T ss_pred CceEEEEecccCCCCceeEeCCEEEECCCCEEEEEECCCCCCEEEEECCCC---Ccc-------ccccccCCCCEEEEEe
Confidence 467889997 455689999999999999999999765 589999986431 222 1233567999999999
Q ss_pred CCceeEEEEcCCCCCCCcEEEEEeC
Q 030950 144 TEKGTYSFYCSPHQGAGMVGQVTVN 168 (168)
Q Consensus 144 ~~pG~Y~y~C~~H~~~GM~G~I~V~ 168 (168)
++||+|.|+|.+|+.+||+|+|+|+
T Consensus 91 ~~~G~Y~Y~C~pH~~~gM~G~I~V~ 115 (115)
T TIGR03102 91 EEPGIYLYVCVPHEALGMKGAVVVE 115 (115)
T ss_pred cCCcEEEEEccCCCCCCCEEEEEEC
Confidence 9999999999999999999999996
No 6
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=99.90 E-value=1.8e-23 Score=155.58 Aligned_cols=82 Identities=33% Similarity=0.614 Sum_probs=71.0
Q ss_pred cCCCceEeCCeEEEcCCCEEEEEeCCCCCeeEEEccCCCCCCccccccccccCccccCCCceEEEEeCCceeEEEEcCCC
Q 030950 77 DDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPH 156 (168)
Q Consensus 77 ~~g~~~F~P~~itV~~GdtV~f~N~d~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t~svtF~~pG~Y~y~C~~H 156 (168)
.+|.|.|+|..|+|++||+|+|+|.+. +||+.+.+..+|++.+.. ...+|++++++|+++|+|.|+|.+|
T Consensus 6 ~~g~m~F~P~~v~V~~GdTV~f~n~d~-~Hnv~~~~~~~p~g~~~~---------~s~~g~~~~~tF~~~G~Y~Y~C~pH 75 (116)
T TIGR02375 6 AEGAMVFEPAYIRAAPGDTVTFVPTDK-GHNVETIKGMIPEGAEAF---------KSKINEEYTVTVTEEGVYGVKCTPH 75 (116)
T ss_pred CCCcEEEeCCEEEECCCCEEEEEECCC-CeeEEEccCCCcCCcccc---------cCCCCCEEEEEeCCCEEEEEEcCCC
Confidence 456899999999999999999999985 899999766667665431 2257899999999999999999999
Q ss_pred CCCCcEEEEEeC
Q 030950 157 QGAGMVGQVTVN 168 (168)
Q Consensus 157 ~~~GM~G~I~V~ 168 (168)
+.+||+|.|+|.
T Consensus 76 ~~~GM~G~V~Vg 87 (116)
T TIGR02375 76 YGMGMVALIQVG 87 (116)
T ss_pred ccCCCEEEEEEC
Confidence 999999999984
No 7
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=99.88 E-value=3.9e-22 Score=139.58 Aligned_cols=79 Identities=29% Similarity=0.562 Sum_probs=66.6
Q ss_pred CceEeCCeEEEcCCCEEEEEeCCCCCeeEEEccCCCCCCccccccccccCccccCCCceEEEEeCCceeEEEEcCCCCCC
Q 030950 80 SLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGA 159 (168)
Q Consensus 80 ~~~F~P~~itV~~GdtV~f~N~d~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t~svtF~~pG~Y~y~C~~H~~~ 159 (168)
++.|+|..|+|++||+|+|+|.|..+||+.+.++. .+... .....+.+|++++++|++||+|.|+|.+|+
T Consensus 5 ~~~F~P~~i~v~~GdtVt~~N~d~~~Hnv~~~~g~--~~~~~------~~~~~~~~g~~~~~tf~~~G~y~y~C~~Hp-- 74 (83)
T TIGR02657 5 KMKYETPELHVKVGDTVTWINREAMPHNVHFVAGV--LGEAA------LKGPMMKKEQAYSLTFTEAGTYDYHCTPHP-- 74 (83)
T ss_pred eeEEcCCEEEECCCCEEEEEECCCCCccEEecCCC--Ccccc------ccccccCCCCEEEEECCCCEEEEEEcCCCC--
Confidence 69999999999999999999999889999987542 11110 122356899999999999999999999999
Q ss_pred CcEEEEEeC
Q 030950 160 GMVGQVTVN 168 (168)
Q Consensus 160 GM~G~I~V~ 168 (168)
+|+|.|+|+
T Consensus 75 ~M~G~v~V~ 83 (83)
T TIGR02657 75 FMRGKVVVE 83 (83)
T ss_pred CCeEEEEEC
Confidence 899999996
No 8
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=99.79 E-value=2.6e-19 Score=129.64 Aligned_cols=83 Identities=33% Similarity=0.640 Sum_probs=48.7
Q ss_pred ccceEEEEEEeecCCCceEeCCeEEEcCCC--EEEEEeCCCCCeeEEEccCCCCCCccccccccccCccccCCCceEEEE
Q 030950 65 SNAMAIEVLLGGDDGSLAFVPSSFSVSSGE--KIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVT 142 (168)
Q Consensus 65 a~a~t~~V~~~~~~g~~~F~P~~itV~~Gd--tV~f~N~d~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t~svt 142 (168)
+..++++|++. ++.|+|++|+|++|+ +|+|+|.|...|++++.+.. . +..+.||++.+++
T Consensus 18 ~~~~~v~I~~~----~~~f~P~~i~v~~G~~v~l~~~N~~~~~h~~~i~~~~----~----------~~~l~~g~~~~~~ 79 (104)
T PF13473_consen 18 AAAQTVTITVT----DFGFSPSTITVKAGQPVTLTFTNNDSRPHEFVIPDLG----I----------SKVLPPGETATVT 79 (104)
T ss_dssp ----------------EEEES-EEEEETTCEEEEEEEE-SSS-EEEEEGGGT----E----------EEEE-TT-EEEEE
T ss_pred ccccccccccc----CCeEecCEEEEcCCCeEEEEEEECCCCcEEEEECCCc----e----------EEEECCCCEEEEE
Confidence 34567777776 479999999999999 67889999999999997631 1 1367899999988
Q ss_pred e--CCceeEEEEcCCCCCCCcEEEEEe
Q 030950 143 L--TEKGTYSFYCSPHQGAGMVGQVTV 167 (168)
Q Consensus 143 F--~~pG~Y~y~C~~H~~~GM~G~I~V 167 (168)
| ++||+|.|+|..|+ .|+|+|+|
T Consensus 80 f~~~~~G~y~~~C~~~~--~m~G~liV 104 (104)
T PF13473_consen 80 FTPLKPGEYEFYCTMHP--NMKGTLIV 104 (104)
T ss_dssp EEE-S-EEEEEB-SSS---TTB-----
T ss_pred EcCCCCEEEEEEcCCCC--cceecccC
Confidence 8 89999999999999 49999987
No 9
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=99.56 E-value=3.2e-14 Score=108.20 Aligned_cols=75 Identities=19% Similarity=0.404 Sum_probs=60.0
Q ss_pred CCceEeCCeEEEcCCCEEEE--EeCCCCCeeEEEccCCCCCCccccccccccCccccCCCceEEEEe--CCceeEEEEcC
Q 030950 79 GSLAFVPSSFSVSSGEKIVF--KNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTL--TEKGTYSFYCS 154 (168)
Q Consensus 79 g~~~F~P~~itV~~GdtV~f--~N~d~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t~svtF--~~pG~Y~y~C~ 154 (168)
+++.|+|+.|+|++||+|+| +|.++.+|++.+... +. +..+.||++.+++| ++||+|+|+|.
T Consensus 54 ~n~~~~P~~I~VkaGD~Vtl~vtN~d~~~H~f~i~~~----gi----------s~~I~pGet~TitF~adKpG~Y~y~C~ 119 (135)
T TIGR03096 54 FNVLNEPEALVVKKGTPVKVTVENKSPISEGFSIDAY----GI----------SEVIKAGETKTISFKADKAGAFTIWCQ 119 (135)
T ss_pred eeeEEcCCEEEECCCCEEEEEEEeCCCCccceEECCC----Cc----------ceEECCCCeEEEEEECCCCEEEEEeCC
Confidence 47899999999999999966 799989999999753 21 13578999887766 89999999999
Q ss_pred CCCCC-CcEEEEEe
Q 030950 155 PHQGA-GMVGQVTV 167 (168)
Q Consensus 155 ~H~~~-GM~G~I~V 167 (168)
.|+.. -|-|.++|
T Consensus 120 ~HP~~~H~~~~~~~ 133 (135)
T TIGR03096 120 LHPKNIHLPGSLNV 133 (135)
T ss_pred CCChhhcCCCcccc
Confidence 99864 35666654
No 10
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=99.51 E-value=5.3e-14 Score=105.39 Aligned_cols=94 Identities=30% Similarity=0.527 Sum_probs=66.6
Q ss_pred EEEEeecCCCceEeCCeEEEcCC-C--EEEEEeCC-----CCCeeEEEccCC---------CCCCccccccc------cc
Q 030950 71 EVLLGGDDGSLAFVPSSFSVSSG-E--KIVFKNNA-----GFPHNVVFDEDE---------IPSGVDVSKIS------MS 127 (168)
Q Consensus 71 ~V~~~~~~g~~~F~P~~itV~~G-d--tV~f~N~d-----~~~Hnv~~~~~~---------~P~g~~~~~~~------~~ 127 (168)
+|.|.++ ++|+|+.++|+|+++ . +|+|+|.+ .++|||++.... ...|.+...+. +.
T Consensus 2 ~v~i~~~-d~M~Fd~~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViA 80 (125)
T TIGR02695 2 EVTIEGN-DSMQFNTKSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIA 80 (125)
T ss_pred eEEEecC-CcccccccEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEE
Confidence 5666653 489999999999996 4 56778985 477999986531 11122211111 11
Q ss_pred cCccccCCCceEEEEeC----Ccee-EEEEcC--CCCCCCcEEEEEe
Q 030950 128 TEDLLNGPGETYAVTLT----EKGT-YSFYCS--PHQGAGMVGQVTV 167 (168)
Q Consensus 128 ~~~~~i~pG~t~svtF~----~pG~-Y~y~C~--~H~~~GM~G~I~V 167 (168)
|. .++.+||+.+++|+ ++|. |.|+|+ +|+. .|+|++++
T Consensus 81 hT-kliggGes~svtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~l 125 (125)
T TIGR02695 81 HT-KVIGGGEKTSVTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVKL 125 (125)
T ss_pred Ec-cccCCCceEEEEEECCCCCCCCcceEEEcCCCcHH-hceEEEeC
Confidence 33 37899999999996 4675 999999 9997 69999864
No 11
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=99.50 E-value=1.5e-13 Score=106.31 Aligned_cols=102 Identities=34% Similarity=0.568 Sum_probs=73.9
Q ss_pred ceEEEEEEe-ecCCCceEeCCeEEEcCCCEEEE--EeCCCCCeeEEEccCCCCCCcccccc---cccc---CccccCCCc
Q 030950 67 AMAIEVLLG-GDDGSLAFVPSSFSVSSGEKIVF--KNNAGFPHNVVFDEDEIPSGVDVSKI---SMST---EDLLNGPGE 137 (168)
Q Consensus 67 a~t~~V~~~-~~~g~~~F~P~~itV~~GdtV~f--~N~d~~~Hnv~~~~~~~P~g~~~~~~---~~~~---~~~~i~pG~ 137 (168)
.+++++.+. .++|.+.|.|+.++++.|++|+| .|..+..|+++......+.+.-.... .|.+ .+..+.||+
T Consensus 43 ~~ti~~~~~~~~lg~m~f~p~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~~Dme~d~~~~v~L~PG~ 122 (158)
T COG4454 43 TQTITVAMKGTDLGKMSFKPSSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILADDMEHDDPNTVTLAPGK 122 (158)
T ss_pred eeeeeeecccccccccccCCCcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhCCccccCCcceeEeCCCC
Confidence 356666663 34567999999999999999998 45557899999874321211100000 1222 236789999
Q ss_pred eEE--EEeCCceeEEEEcC--CCCCCCcEEEEEeC
Q 030950 138 TYA--VTLTEKGTYSFYCS--PHQGAGMVGQVTVN 168 (168)
Q Consensus 138 t~s--vtF~~pG~Y~y~C~--~H~~~GM~G~I~V~ 168 (168)
+.+ |.|+.+|.|+|+|. +|+++||.|.|+|+
T Consensus 123 s~elvv~ft~~g~ye~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 123 SGELVVVFTGAGKYEFACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred cEEEEEEecCCccEEEEecCCCcccCCcEEEEEeC
Confidence 766 56899999999999 99999999999985
No 12
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=99.37 E-value=6.6e-12 Score=97.01 Aligned_cols=99 Identities=20% Similarity=0.330 Sum_probs=63.9
Q ss_pred eEEEEEEeecCCCceEeCCeEE----------EcCCCEEEE--EeCCC-CCeeEEEccCCCCCCc--cccccccccCccc
Q 030950 68 MAIEVLLGGDDGSLAFVPSSFS----------VSSGEKIVF--KNNAG-FPHNVVFDEDEIPSGV--DVSKISMSTEDLL 132 (168)
Q Consensus 68 ~t~~V~~~~~~g~~~F~P~~it----------V~~GdtV~f--~N~d~-~~Hnv~~~~~~~P~g~--~~~~~~~~~~~~~ 132 (168)
.++.|.|.+. .-.|.+.+++ ++.||+|+| +|.+. ..|++.+.....|-.. +.....+......
T Consensus 26 ~~v~v~~~~~--~~~~~~~~f~~~~~~~P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i 103 (148)
T TIGR03095 26 STTLVVAAGP--MPGPSMYSFEIHDLKNPTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGF 103 (148)
T ss_pred CEEEEEEEEc--CCCCCceeEEecCCCCCEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcc
Confidence 5677777653 3456665666 699998876 78865 7999998654222100 0000000000111
Q ss_pred c---CCC----ceEEEEeCCceeEEEEcC--CCCCCCcEEEEEeC
Q 030950 133 N---GPG----ETYAVTLTEKGTYSFYCS--PHQGAGMVGQVTVN 168 (168)
Q Consensus 133 i---~pG----~t~svtF~~pG~Y~y~C~--~H~~~GM~G~I~V~ 168 (168)
. ++| .+++|+|+++|+|||+|. +|.+.||.|.|+|+
T Consensus 104 ~p~~~~g~~~~~~~tf~f~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 104 LPPPKSGKFGYTDFTYHFSTAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred cCCCCCCccceeEEEEECCCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 1 224 467888899999999999 89999999999996
No 13
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=99.31 E-value=1.4e-11 Score=107.57 Aligned_cols=85 Identities=16% Similarity=0.232 Sum_probs=66.0
Q ss_pred eEEEEEEeecCCCceEeCCeEEEcCCCEEEE-EeCCCCCeeEEEccCCCCCCccccccccccCccccCCCceEEEEeC-C
Q 030950 68 MAIEVLLGGDDGSLAFVPSSFSVSSGEKIVF-KNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLT-E 145 (168)
Q Consensus 68 ~t~~V~~~~~~g~~~F~P~~itV~~GdtV~f-~N~d~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t~svtF~-~ 145 (168)
.+++|++.+ ..|+|+.++|++|+++.| +|.+..+|+|.+.++ +.-.. +. ..+.||.+.+++++ +
T Consensus 30 ~~v~Vti~d----~~c~p~~~tVpAG~~~f~V~N~~~~~~Efe~~~~----~~vv~-----e~-EnIaPG~s~~l~~~L~ 95 (375)
T PRK10378 30 PQVKVTVND----KQCEPMTLTVNAGKTQFIIQNHSQKALEWEILKG----VMVVE-----ER-ENIAPGFSQKMTANLQ 95 (375)
T ss_pred CceEEEEEC----CccccCceeeCCCCEEEEEEeCCCCcceEEeecc----ccccc-----cc-cccCCCCceEEEEecC
Confidence 578888884 599999999999996666 788889999988642 11000 11 25789987777765 8
Q ss_pred ceeEEEEcCCCCCCCcEEEEEeC
Q 030950 146 KGTYSFYCSPHQGAGMVGQVTVN 168 (168)
Q Consensus 146 pG~Y~y~C~~H~~~GM~G~I~V~ 168 (168)
||+|.|+|..|. .|+|+|+|+
T Consensus 96 pGtY~~~C~~~~--~~~g~l~Vt 116 (375)
T PRK10378 96 PGEYDMTCGLLT--NPKGKLIVK 116 (375)
T ss_pred CceEEeecCcCC--CCCceEEEe
Confidence 999999999997 689999984
No 14
>PLN03148 Blue copper-like protein; Provisional
Probab=99.20 E-value=9e-11 Score=92.29 Aligned_cols=96 Identities=19% Similarity=0.213 Sum_probs=68.5
Q ss_pred ccceEEEEEEeecCCCceE------eCCeEEEcCCCEEEEEeCCCCCeeEEEccCCCCCCccccccccccCccccCCCce
Q 030950 65 SNAMAIEVLLGGDDGSLAF------VPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGET 138 (168)
Q Consensus 65 a~a~t~~V~~~~~~g~~~F------~P~~itV~~GdtV~f~N~d~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t 138 (168)
..+...+..+|++. ++.. -.+.-++++||++.|+++. ..|||...+. ++++.|... +.-.....|.
T Consensus 16 ~~~~a~~~~VGd~~-GW~~~~~Y~~WA~~k~F~VGD~LvF~Y~~-~~hnV~~V~~---~~Y~~C~~~--~pi~~~tsG~- 87 (167)
T PLN03148 16 SATTATDHIVGANK-GWNPGINYTLWANNQTFYVGDLISFRYQK-TQYNVFEVNQ---TGYDNCTTE--GAAGNWTSGK- 87 (167)
T ss_pred hhccceEEEeCCCC-CcCCCCChhHhhcCCCCccCCEEEEEecC-CCceEEEECh---HHcCcccCC--CCcceecCCC-
Confidence 34556777788643 3421 1356689999999999987 5799988764 356665432 1112234454
Q ss_pred EEEEeCCceeEEEEcC-CCCCCCcEEEEEeC
Q 030950 139 YAVTLTEKGTYSFYCS-PHQGAGMVGQVTVN 168 (168)
Q Consensus 139 ~svtF~~pG~Y~y~C~-~H~~~GM~G~I~V~ 168 (168)
..++++++|.|+|.|. +||..|||..|+|+
T Consensus 88 d~v~L~~~G~~YFIcg~ghC~~GmKl~I~V~ 118 (167)
T PLN03148 88 DFIPLNKAKRYYFICGNGQCFNGMKVTILVH 118 (167)
T ss_pred cEEEecCCccEEEEcCCCccccCCEEEEEEc
Confidence 3689999999999999 99999999999984
No 15
>PRK02888 nitrous-oxide reductase; Validated
Probab=99.12 E-value=3.2e-10 Score=104.33 Aligned_cols=84 Identities=25% Similarity=0.468 Sum_probs=67.6
Q ss_pred ceEEEEEEeecCCCceEeCCeEEEcCCCEEEE--EeCC---CCCeeEEEccCCCCCCccccccccccCccccCCCceEEE
Q 030950 67 AMAIEVLLGGDDGSLAFVPSSFSVSSGEKIVF--KNNA---GFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAV 141 (168)
Q Consensus 67 a~t~~V~~~~~~g~~~F~P~~itV~~GdtV~f--~N~d---~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t~sv 141 (168)
.+.++|.|... .+.|.|++|+|++||+|+| +|.+ +..|.|.+.... . +..+.||++.++
T Consensus 538 G~kv~Vym~a~--a~~f~p~~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~n----I----------~~dv~PG~t~sv 601 (635)
T PRK02888 538 GNKVRVYMTSQ--APAFGLREFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYG----V----------NMEVAPQATASV 601 (635)
T ss_pred CCEEEEEEEEE--ecccCCceEEecCCCEEEEEEEeCCcccccccceeecccC----c----------cEEEcCCceEEE
Confidence 36788999864 7899999999999999887 6753 479999885431 1 135679998887
Q ss_pred Ee--CCceeEEEEcC-----CCCCCCcEEEEEeC
Q 030950 142 TL--TEKGTYSFYCS-----PHQGAGMVGQVTVN 168 (168)
Q Consensus 142 tF--~~pG~Y~y~C~-----~H~~~GM~G~I~V~ 168 (168)
+| ++||.|+|||+ .|. +|.|.|+|+
T Consensus 602 tF~adkPGvy~~~CtefCGa~H~--~M~G~~iVe 633 (635)
T PRK02888 602 TFTADKPGVYWYYCTWFCHALHM--EMRGRMLVE 633 (635)
T ss_pred EEEcCCCEEEEEECCcccccCcc--cceEEEEEE
Confidence 76 79999999999 676 799999985
No 16
>COG3241 Azurin [Energy production and conversion]
Probab=98.80 E-value=1.3e-08 Score=76.39 Aligned_cols=98 Identities=27% Similarity=0.484 Sum_probs=67.9
Q ss_pred ceEEEEEEeecCCCceEeCCeEEEcCCC---EEEEEeCCC-----CCeeEEEccCC---------CCCCccccccc----
Q 030950 67 AMAIEVLLGGDDGSLAFVPSSFSVSSGE---KIVFKNNAG-----FPHNVVFDEDE---------IPSGVDVSKIS---- 125 (168)
Q Consensus 67 a~t~~V~~~~~~g~~~F~P~~itV~~Gd---tV~f~N~d~-----~~Hnv~~~~~~---------~P~g~~~~~~~---- 125 (168)
|+++.|+|.++ .+|+|+.+.|+|.+-. +|+++..+. +.||+++..-. +..+.+..+++
T Consensus 22 Ae~Cavti~~N-DqMqFntn~I~v~k~Ck~ftitL~HtG~~pk~vMGHNwVltk~~DMqgV~~dG~~a~ld~dYvkpdD~ 100 (151)
T COG3241 22 AEACAVTIESN-DQMQFNTNDIQVSKACKEFTITLKHTGTQPKRVMGHNWVLTKTEDMQGVFKDGVGAALDTDYVKPDDA 100 (151)
T ss_pred hhhheeEeecC-cceeecccceeeeecceEEEEEeecCCCCCccccccceEEeechhhhHHHHhhhhhhhccccCCCCCc
Confidence 45566777653 4799999999999887 567776653 79999986521 11111111111
Q ss_pred --cccCccccCCCceEEEEeC----Cce-eEEEEcC--CCCCCCcEEEEEe
Q 030950 126 --MSTEDLLNGPGETYAVTLT----EKG-TYSFYCS--PHQGAGMVGQVTV 167 (168)
Q Consensus 126 --~~~~~~~i~pG~t~svtF~----~pG-~Y~y~C~--~H~~~GM~G~I~V 167 (168)
+.|. .+|..||..++||+ ..| .|.|+|+ +|+.. |+|+++.
T Consensus 101 RViAHT-klIGgGE~~S~Tfd~~kL~~g~~Y~FfCtFPGH~AL-MkGtltl 149 (151)
T COG3241 101 RVIAHT-KLIGGGEETSLTFDPAKLADGVEYKFFCTFPGHGAL-MKGTLTL 149 (151)
T ss_pred ceEEEe-eeecCCccceEecCHHHhcCCceEEEEEecCCcHHh-hcceeee
Confidence 1233 36789999999996 457 9999999 88874 9999974
No 17
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=98.65 E-value=1.6e-07 Score=80.45 Aligned_cols=75 Identities=29% Similarity=0.475 Sum_probs=54.2
Q ss_pred CeEEEcCCCEEE--EEeCCC--CCeeEEEccCCCCCCccccccccccCccccCCCceEEEEe--CCceeEEEEcCC----
Q 030950 86 SSFSVSSGEKIV--FKNNAG--FPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTL--TEKGTYSFYCSP---- 155 (168)
Q Consensus 86 ~~itV~~GdtV~--f~N~d~--~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t~svtF--~~pG~Y~y~C~~---- 155 (168)
..|.++.||+|+ |+|... .+|++.+......+|.. .-..+.||++++|.| +.+|+|+|+|..
T Consensus 59 P~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~~~dg~~--------~~~~I~PG~t~ty~F~~~~~Gty~YH~H~~~~~ 130 (311)
T TIGR02376 59 PLIRVHEGDYVELTLINPPTNTMPHNVDFHAATGALGGA--------ALTQVNPGETATLRFKATRPGAFVYHCAPPGMV 130 (311)
T ss_pred ceEEEECCCEEEEEEEeCCCCCCceeeeecCCCccCCCC--------cceeECCCCeEEEEEEcCCCEEEEEEcCCCCch
Confidence 589999999876 578753 68988775321111111 012478999999888 579999999984
Q ss_pred --CCCCCcEEEEEeC
Q 030950 156 --HQGAGMVGQVTVN 168 (168)
Q Consensus 156 --H~~~GM~G~I~V~ 168 (168)
|...||.|.|+|+
T Consensus 131 ~~q~~~Gl~G~liV~ 145 (311)
T TIGR02376 131 PWHVVSGMNGAIMVL 145 (311)
T ss_pred hHHhhcCcceEEEee
Confidence 5567999999985
No 18
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=98.62 E-value=5.5e-07 Score=83.13 Aligned_cols=80 Identities=18% Similarity=0.307 Sum_probs=53.6
Q ss_pred CeEEEcCCCEEE--EEeCCCCCeeEEEccCCCCCCccccccccccCccccCCCceEEEEe--CCceeEEEEcC--CCCCC
Q 030950 86 SSFSVSSGEKIV--FKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTL--TEKGTYSFYCS--PHQGA 159 (168)
Q Consensus 86 ~~itV~~GdtV~--f~N~d~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t~svtF--~~pG~Y~y~C~--~H~~~ 159 (168)
..|.++.||+|+ |+|.-..++++..-...+|...| ... ......|.||++++|.| .++|+|||+|. .+...
T Consensus 76 P~ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~~~~D--GvP-~vt~~~I~PG~s~~Y~f~~~~~GTyWYHsH~~~q~~~ 152 (587)
T TIGR01480 76 PLLRWREGDTVRLRVTNTLPEDTSIHWHGILLPFQMD--GVP-GVSFAGIAPGETFTYRFPVRQSGTYWYHSHSGFQEQA 152 (587)
T ss_pred ceEEEECCCEEEEEEEcCCCCCceEEcCCCcCCcccc--CCC-cccccccCCCCeEEEEEECCCCeeEEEecCchhHhhc
Confidence 599999999764 57776666666554332232111 000 00112578999999888 57999999997 45556
Q ss_pred CcEEEEEeC
Q 030950 160 GMVGQVTVN 168 (168)
Q Consensus 160 GM~G~I~V~ 168 (168)
||.|-|+|+
T Consensus 153 GL~G~lIV~ 161 (587)
T TIGR01480 153 GLYGPLIID 161 (587)
T ss_pred cceEEEEEC
Confidence 999999985
No 19
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=98.59 E-value=1.8e-07 Score=69.45 Aligned_cols=82 Identities=20% Similarity=0.384 Sum_probs=55.2
Q ss_pred CeEEEcCCCEE--EEEeCCCCCeeEEEccCCCCCCccccccccccCccccCCCceEEEEe--CC-ceeEEEEcCCCC--C
Q 030950 86 SSFSVSSGEKI--VFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTL--TE-KGTYSFYCSPHQ--G 158 (168)
Q Consensus 86 ~~itV~~GdtV--~f~N~d~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t~svtF--~~-pG~Y~y~C~~H~--~ 158 (168)
..|.++.||+| +|+|....+|++..-....|..-..+... ......+.||+++++.| .+ +|+|+|+|..|. .
T Consensus 26 PtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~-~~~~~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~ 104 (117)
T PF07732_consen 26 PTIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVP-GVTQCPIAPGESFTYEFTANQQAGTYWYHSHVHGQQV 104 (117)
T ss_dssp EEEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGT-TTSGSSBSTTEEEEEEEEESSCSEEEEEEECSTTHHH
T ss_pred CEEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcc-cccceeEEeecceeeeEeeeccccceeEeeCCCchhc
Confidence 38999999976 55888778888877543222210000100 01223578999998887 45 899999999443 3
Q ss_pred CCcEEEEEeC
Q 030950 159 AGMVGQVTVN 168 (168)
Q Consensus 159 ~GM~G~I~V~ 168 (168)
.||.|.|+|+
T Consensus 105 ~GL~G~~iV~ 114 (117)
T PF07732_consen 105 MGLYGAIIVE 114 (117)
T ss_dssp TTEEEEEEEE
T ss_pred CcCEEEEEEc
Confidence 7999999985
No 20
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=98.59 E-value=4.1e-07 Score=67.90 Aligned_cols=70 Identities=29% Similarity=0.405 Sum_probs=50.8
Q ss_pred ceEeCCeEEEcCCCEEEE--EeCCCCCeeEEEccCCCCCCccccccccccCccccCCCceEEE--EeCCceeEEEEcC--
Q 030950 81 LAFVPSSFSVSSGEKIVF--KNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAV--TLTEKGTYSFYCS-- 154 (168)
Q Consensus 81 ~~F~P~~itV~~GdtV~f--~N~d~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t~sv--tF~~pG~Y~y~C~-- 154 (168)
....++.|.++.|++|+| ++.| .-|.|.+.+. +.. ...-||+..++ ++++||+|+++|.
T Consensus 41 ~~~~~~~l~lp~g~~v~~~ltS~D-ViHsf~ip~~----~~k----------~d~~PG~~~~~~~~~~~~G~y~~~C~e~ 105 (120)
T PF00116_consen 41 LLETDNELVLPAGQPVRFHLTSED-VIHSFWIPEL----GIK----------MDAIPGRTNSVTFTPDKPGTYYGQCAEY 105 (120)
T ss_dssp TTEBSSEEEEETTSEEEEEEEESS-S-EEEEETTC----TEE----------EEEBTTCEEEEEEEESSSEEEEEEE-SS
T ss_pred cccccceecccccceEeEEEEcCC-cccccccccc----Ccc----------cccccccceeeeeeeccCCcEEEcCccc
Confidence 345789999999999987 5666 8999998543 111 23468886665 5589999999999
Q ss_pred ---CCCCCCcEEEEEe
Q 030950 155 ---PHQGAGMVGQVTV 167 (168)
Q Consensus 155 ---~H~~~GM~G~I~V 167 (168)
+|. .|.++|+|
T Consensus 106 CG~gH~--~M~~~v~V 119 (120)
T PF00116_consen 106 CGAGHS--FMPGKVIV 119 (120)
T ss_dssp SSTTGG--G-EEEEEE
T ss_pred cCcCcC--CCeEEEEE
Confidence 666 69999987
No 21
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=98.57 E-value=5e-07 Score=72.64 Aligned_cols=82 Identities=26% Similarity=0.445 Sum_probs=56.1
Q ss_pred CeEEEcCCCEE--EEEeCCCCCeeEEEccCC--CCCCccc---ccc----ccc--c-CccccCCCceEEEEe--CCceeE
Q 030950 86 SSFSVSSGEKI--VFKNNAGFPHNVVFDEDE--IPSGVDV---SKI----SMS--T-EDLLNGPGETYAVTL--TEKGTY 149 (168)
Q Consensus 86 ~~itV~~GdtV--~f~N~d~~~Hnv~~~~~~--~P~g~~~---~~~----~~~--~-~~~~i~pG~t~svtF--~~pG~Y 149 (168)
-.|-|++|-+| +|+|.+.++||+.+.... .|...+. .++ ... + ...-+.+|++.+..| ..+|.|
T Consensus 86 m~i~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~l~aG~Y 165 (196)
T PF06525_consen 86 MTIYVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYNDLPAGYY 165 (196)
T ss_pred EEEEEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEccCCCceE
Confidence 47889999765 668999999999886532 1111100 011 000 0 012346888887555 379999
Q ss_pred EEEcC--CCCCCCcEEEEEe
Q 030950 150 SFYCS--PHQGAGMVGQVTV 167 (168)
Q Consensus 150 ~y~C~--~H~~~GM~G~I~V 167 (168)
||.|. +|.+.||.++++|
T Consensus 166 wlvC~ipGHA~sGMw~~LiV 185 (196)
T PF06525_consen 166 WLVCGIPGHAESGMWGVLIV 185 (196)
T ss_pred EEEccCCChhhcCCEEEEEE
Confidence 99999 9999999999998
No 22
>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved. This domain is found in a variety of plant cyanins and pollern allergen. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 3.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1JER_A 1WS7_A 1WS8_D 1F56_B 1X9R_B 1X9U_A 2CBP_A.
Probab=98.57 E-value=6e-08 Score=68.31 Aligned_cols=68 Identities=25% Similarity=0.287 Sum_probs=40.9
Q ss_pred eEEEcCCCEEEEEeCCCCCeeEEEccCCCCCCccccccccccCccccCCCceEEEEeCCceeEEEEcC--CCCCCCc
Q 030950 87 SFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCS--PHQGAGM 161 (168)
Q Consensus 87 ~itV~~GdtV~f~N~d~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t~svtF~~pG~Y~y~C~--~H~~~GM 161 (168)
..++++||++.|.+.. ..|+|..++. ++++.+... ....... +....++++++|.++|+|+ .||..||
T Consensus 16 ~~~F~vGD~LvF~y~~-~~h~V~~V~~---~~y~~C~~~--~~~~~~~-~G~~~v~L~~~G~~YFic~~~~HC~~Gq 85 (85)
T PF02298_consen 16 GKTFRVGDTLVFNYDS-GQHSVVEVSK---ADYDSCNSS--NPISTYS-TGNDTVTLTKPGPHYFICGVPGHCQKGQ 85 (85)
T ss_dssp TS-BETTEEEEEE--T-TTB-EEEESH---HHHHHT--S--TTSEEE--SSEEEEEE-SSEEEEEE--STTTTTTT-
T ss_pred CCcEeCCCEEEEEecC-CCCeEEecCh---hhCccCCCC--Cceeccc-CCCEEEEeCCCcCeEEEeCCCCcccccC
Confidence 4578899999998877 5899998764 234444321 1111222 4456899999999999999 8999998
No 23
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=98.41 E-value=2.3e-06 Score=68.10 Aligned_cols=82 Identities=26% Similarity=0.360 Sum_probs=55.4
Q ss_pred CeEEEcCCCEE--EEEeCCCCCeeEEEccC--CCCCCcccc---c-c---ccccCc---cccCCCceEEEEe--CCceeE
Q 030950 86 SSFSVSSGEKI--VFKNNAGFPHNVVFDED--EIPSGVDVS---K-I---SMSTED---LLNGPGETYAVTL--TEKGTY 149 (168)
Q Consensus 86 ~~itV~~GdtV--~f~N~d~~~Hnv~~~~~--~~P~g~~~~---~-~---~~~~~~---~~i~pG~t~svtF--~~pG~Y 149 (168)
-+|-|++|-+| +|.|.+..+||..+... ..|.+.+.. + + ++.... --+..|++.+..| .+||.|
T Consensus 85 mtIyiPaGw~V~V~f~N~e~~pHnl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~sg~~~~~~~G~Y 164 (195)
T TIGR03094 85 MTIYLPAGWNVYVTFTNYESLPHNLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSRSGWWNDTSAGKY 164 (195)
T ss_pred eEEEEeCCCEEEEEEEcCCCCCccEEEecCCCCCCCccccccCceeEeecccccCccccccccccceeEEEeccCCCeeE
Confidence 48889999875 67899999999987653 234222111 1 0 110011 0124677666555 489999
Q ss_pred EEEcC--CCCCCCcEEEEEe
Q 030950 150 SFYCS--PHQGAGMVGQVTV 167 (168)
Q Consensus 150 ~y~C~--~H~~~GM~G~I~V 167 (168)
||.|. +|.++||.+.|+|
T Consensus 165 wlvCgipGHAesGMw~~lIV 184 (195)
T TIGR03094 165 WLVCGITGHAESGMWAVVIV 184 (195)
T ss_pred EEEcccCChhhcCcEEEEEE
Confidence 99999 9999999999998
No 24
>PLN02604 oxidoreductase
Probab=98.37 E-value=5.8e-06 Score=76.05 Aligned_cols=77 Identities=19% Similarity=0.335 Sum_probs=53.3
Q ss_pred CeEEEcCCCEEEE--EeCC-CCCeeEEEccCCCC-----CCccccccccccCccccCCCceEEEEe--CCceeEEEEcC-
Q 030950 86 SSFSVSSGEKIVF--KNNA-GFPHNVVFDEDEIP-----SGVDVSKISMSTEDLLNGPGETYAVTL--TEKGTYSFYCS- 154 (168)
Q Consensus 86 ~~itV~~GdtV~f--~N~d-~~~Hnv~~~~~~~P-----~g~~~~~~~~~~~~~~i~pG~t~svtF--~~pG~Y~y~C~- 154 (168)
..|.++.||+|++ +|.- ..+|++..-.-..+ +|... .....+.||+++++.| +++|+|+|+|.
T Consensus 55 P~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG~~~------~tq~~i~pg~s~~y~f~~~~~Gt~wyH~H~ 128 (566)
T PLN02604 55 PTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDGTEG------VTQCPILPGETFTYEFVVDRPGTYLYHAHY 128 (566)
T ss_pred CcEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccccCCCc------cccCccCCCCeEEEEEEcCCCEEEEEeeCc
Confidence 5899999998755 7773 34666655322111 12110 0112578999999888 68999999998
Q ss_pred -CCCCCCcEEEEEeC
Q 030950 155 -PHQGAGMVGQVTVN 168 (168)
Q Consensus 155 -~H~~~GM~G~I~V~ 168 (168)
.|...||.|-|+|+
T Consensus 129 ~~q~~~Gl~G~liV~ 143 (566)
T PLN02604 129 GMQREAGLYGSIRVS 143 (566)
T ss_pred HHHHhCCCeEEEEEE
Confidence 67778999999984
No 25
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=98.17 E-value=8.2e-06 Score=75.46 Aligned_cols=103 Identities=20% Similarity=0.285 Sum_probs=66.3
Q ss_pred cceEEEEEEeecCCC-------ceEeC-CeEEEcCCCEEEE--EeCCCCCeeEEEccCCCCCCccccccccccCccccCC
Q 030950 66 NAMAIEVLLGGDDGS-------LAFVP-SSFSVSSGEKIVF--KNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGP 135 (168)
Q Consensus 66 ~a~t~~V~~~~~~g~-------~~F~P-~~itV~~GdtV~f--~N~d~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~p 135 (168)
+.+++++.+.++... ..|.+ ..|.++.||+|+| +|....+|.+..-...++-..+............+.|
T Consensus 471 p~r~~~~~L~g~m~~~~wtiNG~~~~~~~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~~~~G~~~~~~dTv~V~P 550 (587)
T TIGR01480 471 PGREIELHLTGNMERFAWSFDGEAFGLKTPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELEDGQGEFQVRKHTVDVPP 550 (587)
T ss_pred CCceEEEEEcCCCceeEEEECCccCCCCCceEecCCCEEEEEEECCCCCCcceeEcCceeeeecCCCcccccCCceeeCC
Confidence 456778877642211 22233 3689999998866 7877788877664321110000000000012257799
Q ss_pred CceEEEEe--CCceeEEEEcC--CCCCCCcEEEEEeC
Q 030950 136 GETYAVTL--TEKGTYSFYCS--PHQGAGMVGQVTVN 168 (168)
Q Consensus 136 G~t~svtF--~~pG~Y~y~C~--~H~~~GM~G~I~V~ 168 (168)
|+++++.| +.||+|.|+|. .|.+.||-+.|.|.
T Consensus 551 g~t~~~~f~ad~pG~w~~HCH~l~H~~~GM~~~~~v~ 587 (587)
T TIGR01480 551 GGKRSFRVTADALGRWAYHCHMLLHMEAGMFREVTVR 587 (587)
T ss_pred CCEEEEEEECCCCeEEEEcCCCHHHHhCcCcEEEEeC
Confidence 99999887 68999999999 88889999999884
No 26
>PRK10965 multicopper oxidase; Provisional
Probab=98.17 E-value=3.3e-05 Score=70.53 Aligned_cols=77 Identities=22% Similarity=0.315 Sum_probs=52.7
Q ss_pred CeEEEcCCCEE--EEEeCCCCCeeEEEccCCCCCCccccccccccCccccCCCceEEEEeC--C-ceeEEEEcCCCC---
Q 030950 86 SSFSVSSGEKI--VFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLT--E-KGTYSFYCSPHQ--- 157 (168)
Q Consensus 86 ~~itV~~GdtV--~f~N~d~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t~svtF~--~-pG~Y~y~C~~H~--- 157 (168)
..|.++.||+| +|+|.-..+.++..-...+|...|- .....+.||+++++.|. + +|+|||+|..|.
T Consensus 77 PtIr~~~Gd~v~v~~~N~L~~~ttiHwHGl~~~~~~DG------~pq~~I~PG~s~~Y~f~~~q~aGT~WYH~H~~g~t~ 150 (523)
T PRK10965 77 PAVRLQRGKAVTVDITNQLPEETTLHWHGLEVPGEVDG------GPQGIIAPGGKRTVTFTVDQPAATCWFHPHQHGKTG 150 (523)
T ss_pred ceEEEECCCEEEEEEEECCCCCccEEcccccCCCccCC------CCCCCCCCCCEEEEEeccCCCCceEEEecCCCCCcH
Confidence 69999999976 5677755565655543333322221 01235789999999884 3 699999998652
Q ss_pred ---CCCcEEEEEeC
Q 030950 158 ---GAGMVGQVTVN 168 (168)
Q Consensus 158 ---~~GM~G~I~V~ 168 (168)
..||.|.++|+
T Consensus 151 ~Qv~~GL~G~lIV~ 164 (523)
T PRK10965 151 RQVAMGLAGLVLIE 164 (523)
T ss_pred HHHhCcCeEEEEEc
Confidence 35899999985
No 27
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=98.14 E-value=2.3e-05 Score=63.10 Aligned_cols=82 Identities=23% Similarity=0.310 Sum_probs=57.5
Q ss_pred ceEEEEEEeecCCCceEe------------CCeEEEcCCCEEEE--EeCCCCCeeEEEccCCCCCCccccccccccCccc
Q 030950 67 AMAIEVLLGGDDGSLAFV------------PSSFSVSSGEKIVF--KNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLL 132 (168)
Q Consensus 67 a~t~~V~~~~~~g~~~F~------------P~~itV~~GdtV~f--~N~d~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~ 132 (168)
...++|++.+. .+.++ .++|.++.|++|+| ++.| .-|.+.+.+.. .. ..
T Consensus 88 ~~~~~i~v~~~--qw~W~f~Y~~~~~~~~~~~~l~vp~g~~v~~~~ts~D-V~Hsf~ip~~~----~k----------~d 150 (201)
T TIGR02866 88 EDALKVKVEGH--QWYWSFDYPESRRGFTTVNELVVPAGTPVRLQVTSKD-VIHSFWVPELG----GK----------ID 150 (201)
T ss_pred CCCEEEEEEEE--EeEEEEEcCCcCCCccccCEEEEEcCCEEEEEEEeCc-hhhcccccccC----ce----------EE
Confidence 45677777653 33322 35899999999988 4544 78998885431 11 13
Q ss_pred cCCCceEEE--EeCCceeEEEEcC-----CCCCCCcEEEEEe
Q 030950 133 NGPGETYAV--TLTEKGTYSFYCS-----PHQGAGMVGQVTV 167 (168)
Q Consensus 133 i~pG~t~sv--tF~~pG~Y~y~C~-----~H~~~GM~G~I~V 167 (168)
.-||...++ ++++||+|..+|+ +|. .|.++|+|
T Consensus 151 a~PG~~~~~~~~~~~~G~y~~~c~e~cG~~h~--~M~~~v~v 190 (201)
T TIGR02866 151 AIPGQYNALWFNADEPGVYYGYCAELCGAGHS--LMLFKVVV 190 (201)
T ss_pred ecCCcEEEEEEEeCCCEEEEEEehhhCCcCcc--CCeEEEEE
Confidence 358876665 4589999999999 676 79999987
No 28
>PRK10883 FtsI repressor; Provisional
Probab=98.09 E-value=3e-05 Score=69.90 Aligned_cols=77 Identities=16% Similarity=0.262 Sum_probs=53.2
Q ss_pred CeEEEcCCCEEE--EEeCCCCCeeEEEccCCCCCCccccccccccCccccCCCceEEEEeC---CceeEEEEcCCCC---
Q 030950 86 SSFSVSSGEKIV--FKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLT---EKGTYSFYCSPHQ--- 157 (168)
Q Consensus 86 ~~itV~~GdtV~--f~N~d~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t~svtF~---~pG~Y~y~C~~H~--- 157 (168)
..|.++.||+|+ |+|.=..+.++..-...+|...+ +.....+.||+++++.|. .+|+|||+|..|.
T Consensus 77 Ptir~~~Gd~v~v~v~N~L~~~ttiHwHGl~~~~~~~------~g~~~~I~PG~~~~y~f~~~~~aGT~WYH~H~~~~t~ 150 (471)
T PRK10883 77 PTIRVWKGDDVKLIYSNRLTEPVSMTVSGLQVPGPLM------GGPARMMSPNADWAPVLPIRQNAATCWYHANTPNRMA 150 (471)
T ss_pred CeEEEECCCEEEEEEEeCCCCCCceeECCccCCCCCC------CCccccCCCCCeEEEEEecCCCceeeEEccCCCCchh
Confidence 589999999764 57765556665554333332211 112235789999999984 5899999998554
Q ss_pred ---CCCcEEEEEeC
Q 030950 158 ---GAGMVGQVTVN 168 (168)
Q Consensus 158 ---~~GM~G~I~V~ 168 (168)
..||.|.++|+
T Consensus 151 ~qv~~GL~G~lII~ 164 (471)
T PRK10883 151 QHVYNGLAGMWLVE 164 (471)
T ss_pred hhHhcCCeEEEEEe
Confidence 35999999985
No 29
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=98.05 E-value=3.7e-05 Score=64.15 Aligned_cols=68 Identities=25% Similarity=0.275 Sum_probs=51.3
Q ss_pred CCeEEEcCCCEEEEE-eCCCCCeeEEEccCCCCCCccccccccccCccccCCCceEEE--EeCCceeEEEEcC-----CC
Q 030950 85 PSSFSVSSGEKIVFK-NNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAV--TLTEKGTYSFYCS-----PH 156 (168)
Q Consensus 85 P~~itV~~GdtV~f~-N~d~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t~sv--tF~~pG~Y~y~C~-----~H 156 (168)
+++|.+++|++|+|. ...+.-|.|.+.+.. .. ...-||....+ +++++|+|..+|. +|
T Consensus 136 ~n~l~lPv~~~V~f~ltS~DViHsF~IP~l~----~k----------~d~iPG~~~~~~~~~~~~G~Y~g~Cae~CG~gH 201 (247)
T COG1622 136 VNELVLPVGRPVRFKLTSADVIHSFWIPQLG----GK----------IDAIPGMTTELWLTANKPGTYRGICAEYCGPGH 201 (247)
T ss_pred cceEEEeCCCeEEEEEEechhceeEEecCCC----ce----------eeecCCceEEEEEecCCCeEEEEEcHhhcCCCc
Confidence 489999999999994 334589999986541 11 12347776665 4589999999998 67
Q ss_pred CCCCcEEEEEeC
Q 030950 157 QGAGMVGQVTVN 168 (168)
Q Consensus 157 ~~~GM~G~I~V~ 168 (168)
. .|+++|+|.
T Consensus 202 ~--~M~~~v~vv 211 (247)
T COG1622 202 S--FMRFKVIVV 211 (247)
T ss_pred c--cceEEEEEE
Confidence 6 799999873
No 30
>PLN02354 copper ion binding / oxidoreductase
Probab=98.05 E-value=8.6e-05 Score=68.29 Aligned_cols=79 Identities=27% Similarity=0.411 Sum_probs=49.8
Q ss_pred EeCCeEEEcCCCEEEE--EeCCCCC---ee--EEEccCCCCCCccccccccccCccccCCCceEEEEeC---CceeEEEE
Q 030950 83 FVPSSFSVSSGEKIVF--KNNAGFP---HN--VVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLT---EKGTYSFY 152 (168)
Q Consensus 83 F~P~~itV~~GdtV~f--~N~d~~~---Hn--v~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t~svtF~---~pG~Y~y~ 152 (168)
|-...|+++.||+|++ +|.-..+ |. +.......-+|.. ...--|.||++++|+|+ ++|+|||+
T Consensus 55 ~PGP~I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~-------~TQcpI~PG~sf~Y~F~~~~q~GT~WYH 127 (552)
T PLN02354 55 FPGPNINSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVP-------GTNCPIPPGTNFTYHFQPKDQIGSYFYY 127 (552)
T ss_pred CcCCcEEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCc-------CCcCCCCCCCcEEEEEEeCCCCcceEEe
Confidence 4457999999998765 6654221 11 1111000112211 01124789999999884 58999999
Q ss_pred cC--CCCCCCcEEEEEeC
Q 030950 153 CS--PHQGAGMVGQVTVN 168 (168)
Q Consensus 153 C~--~H~~~GM~G~I~V~ 168 (168)
|. .+...||.|-|+|+
T Consensus 128 sH~~~Q~~~Gl~G~lII~ 145 (552)
T PLN02354 128 PSTGMHRAAGGFGGLRVN 145 (552)
T ss_pred cCccceecCCccceEEEc
Confidence 97 56667999999985
No 31
>PLN02835 oxidoreductase
Probab=97.93 E-value=0.00022 Score=65.41 Aligned_cols=77 Identities=21% Similarity=0.376 Sum_probs=51.9
Q ss_pred CCeEEEcCCCEEEE--EeCCCCCeeEEEccCCCC-----CCccccccccccCccccCCCceEEEEeC---CceeEEEEcC
Q 030950 85 PSSFSVSSGEKIVF--KNNAGFPHNVVFDEDEIP-----SGVDVSKISMSTEDLLNGPGETYAVTLT---EKGTYSFYCS 154 (168)
Q Consensus 85 P~~itV~~GdtV~f--~N~d~~~Hnv~~~~~~~P-----~g~~~~~~~~~~~~~~i~pG~t~svtF~---~pG~Y~y~C~ 154 (168)
-..|+++.||+|++ +|.-..+.++..-.-.++ +|.. ...--|.||++++|+|. ++|+|||+|.
T Consensus 59 GP~I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv~-------~tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH 131 (539)
T PLN02835 59 GPRLDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVL-------GTNCPIPPNSNYTYKFQTKDQIGTFTYFPS 131 (539)
T ss_pred CCCEEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCCc-------cCcCCCCCCCcEEEEEEECCCCEeEEEEeC
Confidence 46999999998765 676544444444321111 2210 01124789999999983 6999999997
Q ss_pred --CCCCCCcEEEEEeC
Q 030950 155 --PHQGAGMVGQVTVN 168 (168)
Q Consensus 155 --~H~~~GM~G~I~V~ 168 (168)
.|...||.|-|+|+
T Consensus 132 ~~~q~~~Gl~G~lIV~ 147 (539)
T PLN02835 132 TLFHKAAGGFGAINVY 147 (539)
T ss_pred ccchhcCcccceeEEe
Confidence 55667999999983
No 32
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=97.85 E-value=8.7e-05 Score=67.97 Aligned_cols=81 Identities=21% Similarity=0.336 Sum_probs=54.8
Q ss_pred eEeCCeEEEcCCCEEEE--EeCC-CCCeeEEEccCCC-----CCCccccccccccCccccCCCceEEEEe--CCceeEEE
Q 030950 82 AFVPSSFSVSSGEKIVF--KNNA-GFPHNVVFDEDEI-----PSGVDVSKISMSTEDLLNGPGETYAVTL--TEKGTYSF 151 (168)
Q Consensus 82 ~F~P~~itV~~GdtV~f--~N~d-~~~Hnv~~~~~~~-----P~g~~~~~~~~~~~~~~i~pG~t~svtF--~~pG~Y~y 151 (168)
.|--..|.++.||+|++ +|.- ..++++..-.-.. -+|... .....+.||+++++.| +++|+|+|
T Consensus 28 ~~pGP~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~------vtq~~I~PG~s~~y~f~~~~~Gt~wy 101 (541)
T TIGR03388 28 QFPGPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAG------VTQCAINPGETFIYNFVVDRPGTYFY 101 (541)
T ss_pred cCCCCeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCc------cccCCcCCCCEEEEEEEcCCCEEEEE
Confidence 34446999999998766 6763 2455555432111 012100 0113578999999888 68999999
Q ss_pred EcC--CCCCCCcEEEEEeC
Q 030950 152 YCS--PHQGAGMVGQVTVN 168 (168)
Q Consensus 152 ~C~--~H~~~GM~G~I~V~ 168 (168)
+|. .|...||.|-|+|+
T Consensus 102 H~H~~~q~~~Gl~G~liV~ 120 (541)
T TIGR03388 102 HGHYGMQRSAGLYGSLIVD 120 (541)
T ss_pred EecchHHhhccceEEEEEe
Confidence 998 77778999999985
No 33
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=97.78 E-value=0.00028 Score=65.50 Aligned_cols=77 Identities=19% Similarity=0.316 Sum_probs=50.7
Q ss_pred CCeEEEcCCCEEEE--EeCCCCCeeEEEccCC-----CCCCccccccccccCccccCCCceEEEEe---CCceeEEEEcC
Q 030950 85 PSSFSVSSGEKIVF--KNNAGFPHNVVFDEDE-----IPSGVDVSKISMSTEDLLNGPGETYAVTL---TEKGTYSFYCS 154 (168)
Q Consensus 85 P~~itV~~GdtV~f--~N~d~~~Hnv~~~~~~-----~P~g~~~~~~~~~~~~~~i~pG~t~svtF---~~pG~Y~y~C~ 154 (168)
-..|+++.||+|++ +|.-+.+.++..-.-. .-+|.. ...--|.||++|+|+| +++|+|||++.
T Consensus 59 GPtI~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DGv~-------~TQcPI~PG~sftY~F~~~dq~GT~WYHsH 131 (596)
T PLN00044 59 GPALNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDGVG-------GTNCAIPAGWNWTYQFQVKDQVGSFFYAPS 131 (596)
T ss_pred CCcEEEECCCEEEEEEEeCCCCCccEEECCccCCCCccccCCC-------CCcCCcCCCCcEEEEEEeCCCCceeEeecc
Confidence 36899999998765 5665434343332211 112221 0112478999999888 37999999996
Q ss_pred --CCCCCCcEEEEEeC
Q 030950 155 --PHQGAGMVGQVTVN 168 (168)
Q Consensus 155 --~H~~~GM~G~I~V~ 168 (168)
.+...||.|-|+|+
T Consensus 132 ~~~Q~~~Gl~GalII~ 147 (596)
T PLN00044 132 TALHRAAGGYGAITIN 147 (596)
T ss_pred chhhhhCcCeeEEEEc
Confidence 55556999999985
No 34
>PLN02191 L-ascorbate oxidase
Probab=97.69 E-value=0.00024 Score=65.69 Aligned_cols=79 Identities=19% Similarity=0.279 Sum_probs=52.7
Q ss_pred eCCeEEEcCCCEEEE--EeCCC-CCeeEEEccCCC-----CCCccccccccccCccccCCCceEEEEe--CCceeEEEEc
Q 030950 84 VPSSFSVSSGEKIVF--KNNAG-FPHNVVFDEDEI-----PSGVDVSKISMSTEDLLNGPGETYAVTL--TEKGTYSFYC 153 (168)
Q Consensus 84 ~P~~itV~~GdtV~f--~N~d~-~~Hnv~~~~~~~-----P~g~~~~~~~~~~~~~~i~pG~t~svtF--~~pG~Y~y~C 153 (168)
--..|+++.||+|++ +|.-. .++++..-.-.. .+|... ....-|.||++++|.| +++|+|+|+|
T Consensus 52 pGP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~g------vtq~pI~PG~s~~Y~f~~~~~GT~wYHs 125 (574)
T PLN02191 52 PGPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAG------VTQCAINPGETFTYKFTVEKPGTHFYHG 125 (574)
T ss_pred CCCeEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCc------cccCCcCCCCeEEEEEECCCCeEEEEee
Confidence 346999999998765 67632 345554432211 122110 1113578999999887 5899999999
Q ss_pred C--CCCCCCcEEEEEeC
Q 030950 154 S--PHQGAGMVGQVTVN 168 (168)
Q Consensus 154 ~--~H~~~GM~G~I~V~ 168 (168)
. .+...||.|-|+|+
T Consensus 126 H~~~q~~~Gl~G~liV~ 142 (574)
T PLN02191 126 HYGMQRSAGLYGSLIVD 142 (574)
T ss_pred CcHHHHhCCCEEEEEEc
Confidence 7 55567999999984
No 35
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=97.67 E-value=0.00031 Score=64.31 Aligned_cols=80 Identities=16% Similarity=0.310 Sum_probs=52.7
Q ss_pred EeCCeEEEcCCCEEEE--EeCCCCCeeEEEccCCC-----CCCccccccccccCccccCCCceEEEEeC---CceeEEEE
Q 030950 83 FVPSSFSVSSGEKIVF--KNNAGFPHNVVFDEDEI-----PSGVDVSKISMSTEDLLNGPGETYAVTLT---EKGTYSFY 152 (168)
Q Consensus 83 F~P~~itV~~GdtV~f--~N~d~~~Hnv~~~~~~~-----P~g~~~~~~~~~~~~~~i~pG~t~svtF~---~pG~Y~y~ 152 (168)
|--..|+++.||+|++ +|.-..++++..-.-.. -+|... .+.--|.||++++++|. ++|+|||+
T Consensus 31 ~PGP~i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~------vTq~pI~PG~s~~Y~f~~~~~~GT~WYH 104 (539)
T TIGR03389 31 FPGPTLYAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAY------ITQCPIQPGQSYVYNFTITGQRGTLWWH 104 (539)
T ss_pred ccCCEEEEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcc------cccCCcCCCCeEEEEEEecCCCeeEEEe
Confidence 3336999999998765 67665666655432111 122110 01124689999998883 68999999
Q ss_pred cCC-CCCCCcEEEEEeC
Q 030950 153 CSP-HQGAGMVGQVTVN 168 (168)
Q Consensus 153 C~~-H~~~GM~G~I~V~ 168 (168)
|.. ++..||.|-|+|+
T Consensus 105 sH~~~~~~Gl~G~lIV~ 121 (539)
T TIGR03389 105 AHISWLRATVYGAIVIL 121 (539)
T ss_pred cCchhhhccceEEEEEc
Confidence 983 3446999999985
No 36
>PLN02168 copper ion binding / pectinesterase
Probab=97.67 E-value=0.00027 Score=64.98 Aligned_cols=77 Identities=18% Similarity=0.307 Sum_probs=50.5
Q ss_pred CCeEEEcCCCEEEE--EeCCCCCeeEEEccCCCC-----CCccccccccccCccccCCCceEEEEeC---CceeEEEEcC
Q 030950 85 PSSFSVSSGEKIVF--KNNAGFPHNVVFDEDEIP-----SGVDVSKISMSTEDLLNGPGETYAVTLT---EKGTYSFYCS 154 (168)
Q Consensus 85 P~~itV~~GdtV~f--~N~d~~~Hnv~~~~~~~P-----~g~~~~~~~~~~~~~~i~pG~t~svtF~---~pG~Y~y~C~ 154 (168)
-..|+++.||+|++ +|.-..+.++..-...++ +|.. + .---|.||++++|.|. ++|+|||+|.
T Consensus 56 GP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~-----g--tQcpI~PG~sftY~F~~~~q~GT~WYHsH 128 (545)
T PLN02168 56 GPLLNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVR-----G--TNCPILPGTNWTYRFQVKDQIGSYFYFPS 128 (545)
T ss_pred CCcEEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCC-----C--CcCCCCCCCcEEEEEEeCCCCceEEEecC
Confidence 36999999998765 565544433333221111 2211 0 1125789999998883 6999999997
Q ss_pred --CCCCCCcEEEEEeC
Q 030950 155 --PHQGAGMVGQVTVN 168 (168)
Q Consensus 155 --~H~~~GM~G~I~V~ 168 (168)
.+...||.|-|+|+
T Consensus 129 ~~~Q~~~GL~G~lII~ 144 (545)
T PLN02168 129 LLLQKAAGGYGAIRIY 144 (545)
T ss_pred hhhhhhCcceeEEEEc
Confidence 44456999999985
No 37
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=97.54 E-value=0.00028 Score=52.47 Aligned_cols=87 Identities=20% Similarity=0.343 Sum_probs=56.2
Q ss_pred eEeCCeEEEcCCCEEEE--EeCCCCCeeEEEccCCC---C-CCccc-----cccc----cccCccccCCCceEEEEe--C
Q 030950 82 AFVPSSFSVSSGEKIVF--KNNAGFPHNVVFDEDEI---P-SGVDV-----SKIS----MSTEDLLNGPGETYAVTL--T 144 (168)
Q Consensus 82 ~F~P~~itV~~GdtV~f--~N~d~~~Hnv~~~~~~~---P-~g~~~-----~~~~----~~~~~~~i~pG~t~svtF--~ 144 (168)
......+.++.|+.|+| .|.+...|.+-+-.... . .+... .... .-.+...+.+|+...+.| +
T Consensus 30 ~~~~~~~~~~~g~~v~~~l~N~~~~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~ 109 (138)
T PF07731_consen 30 FGNTPVIEVKNGDVVEIVLQNNGSMPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRAD 109 (138)
T ss_dssp SSTTSEEEEETTSEEEEEEEECTTSSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEET
T ss_pred CCCcceEEEeCCCEEEEEEECCCCCccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEee
Confidence 33457889999998876 68777888776643200 0 00000 0000 012335677888776654 7
Q ss_pred CceeEEEEcC--CCCCCCcEEEEEeC
Q 030950 145 EKGTYSFYCS--PHQGAGMVGQVTVN 168 (168)
Q Consensus 145 ~pG~Y~y~C~--~H~~~GM~G~I~V~ 168 (168)
.||.|.|+|- .|...||.+.+.|.
T Consensus 110 ~~G~w~~HCHi~~H~~~GM~~~~~v~ 135 (138)
T PF07731_consen 110 NPGPWLFHCHILEHEDNGMMAVFVVG 135 (138)
T ss_dssp STEEEEEEESSHHHHHTT-EEEEEEC
T ss_pred cceEEEEEEchHHHHhCCCeEEEEEc
Confidence 9999999999 89999999999884
No 38
>PLN02991 oxidoreductase
Probab=97.47 E-value=0.002 Score=59.30 Aligned_cols=78 Identities=18% Similarity=0.329 Sum_probs=49.1
Q ss_pred eCCeEEEcCCCEEEE--EeCCCCCeeEEEccCCC-----CCCccccccccccCccccCCCceEEEEeC---CceeEEEEc
Q 030950 84 VPSSFSVSSGEKIVF--KNNAGFPHNVVFDEDEI-----PSGVDVSKISMSTEDLLNGPGETYAVTLT---EKGTYSFYC 153 (168)
Q Consensus 84 ~P~~itV~~GdtV~f--~N~d~~~Hnv~~~~~~~-----P~g~~~~~~~~~~~~~~i~pG~t~svtF~---~pG~Y~y~C 153 (168)
--..|+++.||+|++ +|.-..+-++..-.-.+ -+|.. ...--|.||++++|+|. ++|+|||++
T Consensus 57 PGP~I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv~-------~tQcpI~PG~sftY~F~~~~q~GT~WYHs 129 (543)
T PLN02991 57 PGPDIISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGVY-------GTTCPIPPGKNYTYALQVKDQIGSFYYFP 129 (543)
T ss_pred CCCcEEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCCC-------CCCCccCCCCcEEEEEEeCCCCcceEEec
Confidence 346999999998866 45433222222211111 12211 01125789999998883 699999999
Q ss_pred C--CCCCCCcEEEEEeC
Q 030950 154 S--PHQGAGMVGQVTVN 168 (168)
Q Consensus 154 ~--~H~~~GM~G~I~V~ 168 (168)
. .+...|+.|-|+|+
T Consensus 130 H~~~q~~~Gl~G~lIV~ 146 (543)
T PLN02991 130 SLGFHKAAGGFGAIRIS 146 (543)
T ss_pred CcchhhhCCCeeeEEEe
Confidence 7 44455899999984
No 39
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=97.36 E-value=0.0012 Score=60.44 Aligned_cols=81 Identities=12% Similarity=0.210 Sum_probs=50.5
Q ss_pred eEeCCeEEEcCCCEEEE--EeCC-CCCeeEEEccCCC-----CCCccccccccccCccccCCCceEEEEeC----CceeE
Q 030950 82 AFVPSSFSVSSGEKIVF--KNNA-GFPHNVVFDEDEI-----PSGVDVSKISMSTEDLLNGPGETYAVTLT----EKGTY 149 (168)
Q Consensus 82 ~F~P~~itV~~GdtV~f--~N~d-~~~Hnv~~~~~~~-----P~g~~~~~~~~~~~~~~i~pG~t~svtF~----~pG~Y 149 (168)
.|--..|+++.||+|++ +|.- ..+.++..-.-.+ -+|... ...--|.||++++|.|. ++|+|
T Consensus 35 ~~PGP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~------vTQcpI~PG~sf~Y~f~~~~~q~GT~ 108 (538)
T TIGR03390 35 TSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPL------ASQWPIPPGHFFDYEIKPEPGDAGSY 108 (538)
T ss_pred cCCCCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcc------cccCCCCCCCcEEEEEEecCCCCeee
Confidence 45567999999998755 6752 2344443322111 112110 01114789999999884 68999
Q ss_pred EEEcC-CCCCCCcEEEEEeC
Q 030950 150 SFYCS-PHQGAGMVGQVTVN 168 (168)
Q Consensus 150 ~y~C~-~H~~~GM~G~I~V~ 168 (168)
||+|. .-+..||.|-|+|+
T Consensus 109 WYHsH~~~Q~~~l~G~lIV~ 128 (538)
T TIGR03390 109 FYHSHVGFQAVTAFGPLIVE 128 (538)
T ss_pred EEecCCchhhhcceeEEEEc
Confidence 99997 22234799999985
No 40
>PLN02792 oxidoreductase
Probab=97.34 E-value=0.00088 Score=61.51 Aligned_cols=79 Identities=19% Similarity=0.378 Sum_probs=50.8
Q ss_pred eEeCCeEEEcCCCEEEE--EeCCCCCeeEEEccCCC-----CCCccccccccccCccccCCCceEEEEeC---CceeEEE
Q 030950 82 AFVPSSFSVSSGEKIVF--KNNAGFPHNVVFDEDEI-----PSGVDVSKISMSTEDLLNGPGETYAVTLT---EKGTYSF 151 (168)
Q Consensus 82 ~F~P~~itV~~GdtV~f--~N~d~~~Hnv~~~~~~~-----P~g~~~~~~~~~~~~~~i~pG~t~svtF~---~pG~Y~y 151 (168)
.|--..|+++.||+|++ +|.-..+.++..-.-.+ -+|.. ...--|.||++++|+|+ ++|+|||
T Consensus 43 q~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~-------~tqcPI~PG~sftY~F~~~~q~GT~WY 115 (536)
T PLN02792 43 QFPGPEIRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVY-------GTTCPIPPGKNYTYDFQVKDQVGSYFY 115 (536)
T ss_pred CCCCCcEEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCC-------CCcCccCCCCcEEEEEEeCCCccceEE
Confidence 34457999999998755 66644444433322111 12211 01124789999998884 6999999
Q ss_pred EcC--CCCCCCcEEEEEe
Q 030950 152 YCS--PHQGAGMVGQVTV 167 (168)
Q Consensus 152 ~C~--~H~~~GM~G~I~V 167 (168)
+|. .+...|+.|-|+|
T Consensus 116 HsH~~~q~~~Gl~G~liI 133 (536)
T PLN02792 116 FPSLAVQKAAGGYGSLRI 133 (536)
T ss_pred ecCcchhhhcccccceEE
Confidence 997 4445689999876
No 41
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=97.27 E-value=0.0017 Score=52.39 Aligned_cols=66 Identities=17% Similarity=0.219 Sum_probs=48.7
Q ss_pred CeEEEcCCCEEEEEe-CCCCCeeEEEccCCCCCCccccccccccCccccCCCceEEE--EeCCceeEEEEcC-----CCC
Q 030950 86 SSFSVSSGEKIVFKN-NAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAV--TLTEKGTYSFYCS-----PHQ 157 (168)
Q Consensus 86 ~~itV~~GdtV~f~N-~d~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t~sv--tF~~pG~Y~y~C~-----~H~ 157 (168)
+++.++.|.+|+|.- ..+.-|.|.+.+. +.. ...-||...++ +++++|+|..+|+ +|.
T Consensus 116 ~~l~lp~g~~v~~~ltS~DViHsf~vp~l----~~k----------~d~~PG~~~~~~~~~~~~G~y~g~C~e~CG~~H~ 181 (194)
T MTH00047 116 KPLRLVYGVPYHLLVTSSDVIHSFSVPDL----NLK----------MDAIPGRINHLFFCPDRHGVFVGYCSELCGVGHS 181 (194)
T ss_pred ceEEEeCCCEEEeeeecCccccceecccc----Cce----------eecCCCceEEEEEEcCCCEEEEEEeehhhCcCcc
Confidence 458899999999843 3358999988543 111 12348887665 4589999999999 677
Q ss_pred CCCcEEEEEe
Q 030950 158 GAGMVGQVTV 167 (168)
Q Consensus 158 ~~GM~G~I~V 167 (168)
.|.+.|.|
T Consensus 182 --~M~~~v~v 189 (194)
T MTH00047 182 --YMPIVIEV 189 (194)
T ss_pred --cCcEEEEE
Confidence 79999987
No 42
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.17 E-value=0.0064 Score=54.30 Aligned_cols=83 Identities=23% Similarity=0.384 Sum_probs=48.8
Q ss_pred EeCCeEEEcCCCEEEE--EeCCCCCeeEEEccCCCCCCccccccccccCccccCCCceEEEEeCC--ceeEEEEcCCC--
Q 030950 83 FVPSSFSVSSGEKIVF--KNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTE--KGTYSFYCSPH-- 156 (168)
Q Consensus 83 F~P~~itV~~GdtV~f--~N~d~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t~svtF~~--pG~Y~y~C~~H-- 156 (168)
+-...|.++.||+|++ +|.-...=++..-...+|...+... ...-....+|+++.++|.. +|+|||+-..|
T Consensus 61 ~~gP~i~~~~Gd~v~l~~~N~l~~~t~vh~HG~~~p~~~dG~~---~~~~~~~~~~~~~~y~f~~~~~gT~wyh~H~~~Q 137 (451)
T COG2132 61 LPGPTIRVKKGDTVTLDLTNRLLVDTSVHWHGLPVPGEMDGVP---PLTQIPPGPGETPTYTFTQDVPGTYWYHPHTHGQ 137 (451)
T ss_pred ccCceEEEecCCEEEEEEEeCCCCCceEEEcCcccCccccCCC---cccccCCCCCCcEEEeecCCCCcceEeccCCCch
Confidence 3347999999998754 7774221111111112332111100 0112345688899999965 89999998655
Q ss_pred CCCCcEEEEEeC
Q 030950 157 QGAGMVGQVTVN 168 (168)
Q Consensus 157 ~~~GM~G~I~V~ 168 (168)
...||.|.++|+
T Consensus 138 ~~~Gl~G~~II~ 149 (451)
T COG2132 138 VYDGLAGALIIE 149 (451)
T ss_pred hhcccceeEEEe
Confidence 225899999885
No 43
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=97.05 E-value=0.0032 Score=51.75 Aligned_cols=65 Identities=17% Similarity=0.143 Sum_probs=48.4
Q ss_pred CeEEEcCCCEEEE--EeCCCCCeeEEEccCCCCCCccccccccccCccccCCCceEEE--EeCCceeEEEEcC-----CC
Q 030950 86 SSFSVSSGEKIVF--KNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAV--TLTEKGTYSFYCS-----PH 156 (168)
Q Consensus 86 ~~itV~~GdtV~f--~N~d~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t~sv--tF~~pG~Y~y~C~-----~H 156 (168)
+++.++.|.+|+| +..| .-|.+.+.+. |.. ...-||...++ ++++||.|..+|+ +|
T Consensus 140 n~l~lP~~~~v~~~~ts~D-ViHsf~ip~~----~~k----------~d~~Pg~~~~~~~~~~~~g~y~~~C~e~CG~~H 204 (228)
T MTH00140 140 NRLVLPYSVDTRVLVTSAD-VIHSWTVPSL----GVK----------VDAIPGRLNQLSFEPKRPGVFYGQCSEICGANH 204 (228)
T ss_pred CeEEEeeCcEEEEEEEcCc-cccceecccc----Cce----------eECCCCcceeEEEEeCCCEEEEEECccccCcCc
Confidence 5799999999987 4555 8899888543 111 12347876655 4589999999999 67
Q ss_pred CCCCcEEEEEe
Q 030950 157 QGAGMVGQVTV 167 (168)
Q Consensus 157 ~~~GM~G~I~V 167 (168)
. .|.++|+|
T Consensus 205 ~--~M~~~v~v 213 (228)
T MTH00140 205 S--FMPIVVEA 213 (228)
T ss_pred C--CCeEEEEE
Confidence 7 69999987
No 44
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=96.98 E-value=0.0062 Score=50.17 Aligned_cols=84 Identities=15% Similarity=0.174 Sum_probs=56.1
Q ss_pred eEEEEEEeecCCCceEe-C-------CeEEEcCCCEEEEEe-CCCCCeeEEEccCCCCCCccccccccccCccccCCCce
Q 030950 68 MAIEVLLGGDDGSLAFV-P-------SSFSVSSGEKIVFKN-NAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGET 138 (168)
Q Consensus 68 ~t~~V~~~~~~g~~~F~-P-------~~itV~~GdtV~f~N-~d~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t 138 (168)
...+|++.+.+=.+.|+ | +++.++.|..|+|.- .++.-|.|-+-... .. ...-||..
T Consensus 113 ~~l~I~V~g~QW~W~f~Yp~~~~~~~nel~lP~g~pV~~~ltS~DViHSF~VP~l~----~K----------~DaiPG~~ 178 (226)
T TIGR01433 113 KPITIEVVALDWKWLFIYPEQGIATVNEIAFPVNTPINFKITSNSVMNSFFIPQLG----SQ----------IYAMAGMQ 178 (226)
T ss_pred CCeEEEEEEEeceEEEEcCCCCccccceEEEECCCEEEEEEEECchhhhhhhhhcC----Ce----------eecCCCce
Confidence 45677776531122222 3 689999999998843 23488998775431 11 12347776
Q ss_pred EEE--EeCCceeEEEEcC-----CCCCCCcEEEEEe
Q 030950 139 YAV--TLTEKGTYSFYCS-----PHQGAGMVGQVTV 167 (168)
Q Consensus 139 ~sv--tF~~pG~Y~y~C~-----~H~~~GM~G~I~V 167 (168)
..+ ++++||+|.-+|. +|. .|..+|+|
T Consensus 179 n~~~~~~~~~G~y~g~CaE~CG~~Ha--~M~~~V~v 212 (226)
T TIGR01433 179 TKLHLIANEPGVYDGISANYSGPGFS--GMKFKAIA 212 (226)
T ss_pred EEEEEEeCCCEEEEEEchhhcCcCcc--CCeEEEEE
Confidence 554 5689999999998 777 69999987
No 45
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=96.88 E-value=0.002 Score=58.10 Aligned_cols=72 Identities=29% Similarity=0.510 Sum_probs=47.0
Q ss_pred ceEeCCeEEEcCCCEEEE--EeCC---CCCeeEEEccCCCCCCccccccccccCccccCCCceEEEEe--CCceeEEEEc
Q 030950 81 LAFVPSSFSVSSGEKIVF--KNNA---GFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTL--TEKGTYSFYC 153 (168)
Q Consensus 81 ~~F~P~~itV~~GdtV~f--~N~d---~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t~svtF--~~pG~Y~y~C 153 (168)
..|.--++.|+.||.|+. +|.+ ..-|-+++.+. ++ ...+.|.++.+++| ++||.+||||
T Consensus 553 ps~~l~ef~Vkq~DEVt~l~tnld~Ved~thgfv~p~~----~v----------~~~v~pq~tasvtf~a~kpgv~w~yc 618 (637)
T COG4263 553 PSFGLTEFKVKQGDEVTVLTTNLDEVEDLTHGFVIPNY----GV----------NMEVKPQRTASVTFYADKPGVAWYYC 618 (637)
T ss_pred CCCceEEEEEecCcEEEEEecccceeccccceeeeccC----ce----------EEEEccCCceEEEEEccCCeeeehhh
Confidence 344445666777776544 4443 24455554332 11 13567888888888 7999999999
Q ss_pred C-----CCCCCCcEEEEEeC
Q 030950 154 S-----PHQGAGMVGQVTVN 168 (168)
Q Consensus 154 ~-----~H~~~GM~G~I~V~ 168 (168)
+ .|. .|.|++.|+
T Consensus 619 s~fchalh~--em~~rmlve 636 (637)
T COG4263 619 SWFCHALHM--EMAGRMLVE 636 (637)
T ss_pred hhHHHHHHH--hhccceeec
Confidence 9 566 599998886
No 46
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=96.75 E-value=0.011 Score=46.45 Aligned_cols=67 Identities=18% Similarity=0.196 Sum_probs=48.4
Q ss_pred CCeEEEcCCCEEEEE-eCCCCCeeEEEccCCCCCCccccccccccCccccCCCceEEE--EeCCceeEEEEcC-----CC
Q 030950 85 PSSFSVSSGEKIVFK-NNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAV--TLTEKGTYSFYCS-----PH 156 (168)
Q Consensus 85 P~~itV~~GdtV~f~-N~d~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t~sv--tF~~pG~Y~y~C~-----~H 156 (168)
-+.+.++.|..|+|. ...+.-|.|.+-.. |.. ...-||....+ +++++|.|...|+ +|
T Consensus 72 Dn~LvLP~g~~Vr~~lTS~DVIHSF~VP~l----gvK----------~DavPGr~n~l~~~~~~~G~y~gqCsElCG~gH 137 (162)
T PTZ00047 72 DKRLTLPTRTHIRFLITATDVIHSWSVPSL----GIK----------ADAIPGRLHKINTFILREGVFYGQCSEMCGTLH 137 (162)
T ss_pred cCCEEEeCCCEEEEEEEeCccceeeecccc----Cce----------eeccCCceEEEEEecCCCeEEEEEcchhcCcCc
Confidence 457999999999884 33358899988543 111 12347776554 4589999999999 67
Q ss_pred CCCCcEEEEEe
Q 030950 157 QGAGMVGQVTV 167 (168)
Q Consensus 157 ~~~GM~G~I~V 167 (168)
. .|.+.|.|
T Consensus 138 s--~M~~~V~v 146 (162)
T PTZ00047 138 G--FMPIVVEA 146 (162)
T ss_pred c--CceEEEEE
Confidence 6 79999876
No 47
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=96.63 E-value=0.012 Score=48.47 Aligned_cols=65 Identities=18% Similarity=0.184 Sum_probs=47.6
Q ss_pred CeEEEcCCCEEEE--EeCCCCCeeEEEccCCCCCCccccccccccCccccCCCceEEEE--eCCceeEEEEcC-----CC
Q 030950 86 SSFSVSSGEKIVF--KNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVT--LTEKGTYSFYCS-----PH 156 (168)
Q Consensus 86 ~~itV~~GdtV~f--~N~d~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t~svt--F~~pG~Y~y~C~-----~H 156 (168)
+++.++.|..|+| +..| .-|.+.+-+. |.. ...-||...++. +++||.|...|+ +|
T Consensus 140 n~lvlP~~~~v~~~~tS~D-ViHsf~vP~~----~~k----------~daiPG~~~~~~~~~~~~G~~~g~Cse~CG~~H 204 (228)
T MTH00008 140 NRAVLPMQTEIRVLVTAAD-VIHSWTVPSL----GVK----------VDAVPGRLNQIGFTITRPGVFYGQCSEICGANH 204 (228)
T ss_pred ceEEEecCCEEEEEEEeCC-cccccccccc----Ccc----------eecCCCceEEEEEEeCCCEEEEEEChhhcCcCc
Confidence 5788999998887 5655 8899887543 221 122488766554 589999999999 67
Q ss_pred CCCCcEEEEEe
Q 030950 157 QGAGMVGQVTV 167 (168)
Q Consensus 157 ~~~GM~G~I~V 167 (168)
. .|..+|.|
T Consensus 205 s--~M~~~v~v 213 (228)
T MTH00008 205 S--FMPIVLEA 213 (228)
T ss_pred c--CceeEEEE
Confidence 6 79999876
No 48
>PRK10965 multicopper oxidase; Provisional
Probab=96.53 E-value=0.0097 Score=54.55 Aligned_cols=88 Identities=18% Similarity=0.237 Sum_probs=52.4
Q ss_pred CceEeCCe--EEEcCCCEEEE--EeCCC-CCeeEEEccCC--C--CCCccccccccccCc-cccCCCceEE--EEeC---
Q 030950 80 SLAFVPSS--FSVSSGEKIVF--KNNAG-FPHNVVFDEDE--I--PSGVDVSKISMSTED-LLNGPGETYA--VTLT--- 144 (168)
Q Consensus 80 ~~~F~P~~--itV~~GdtV~f--~N~d~-~~Hnv~~~~~~--~--P~g~~~~~~~~~~~~-~~i~pG~t~s--vtF~--- 144 (168)
+..|+++. ++++.|++.+| .|... ..|.+.+-... + -+|...........| ..+.+ ++.+ +.|+
T Consensus 418 G~~~~~~~~~~~~~~G~~e~w~i~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~~~~~~~wkDTv~v~~-~~~~i~~~f~~~~ 496 (523)
T PRK10965 418 GKAFDMNKPMFAAKKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVRVEG-GRSEVLVKFDHDA 496 (523)
T ss_pred CeECCCCCcceecCCCCEEEEEEEeCCCCCccCeEEeCcEEEEEEecCCCCCccccccccEEEECC-cEEEEEEEecCCC
Confidence 45677654 57999999988 56653 56876653310 0 011100000000122 34555 4333 5675
Q ss_pred -CceeEEEEcC--CCCCCCcEEEEEeC
Q 030950 145 -EKGTYSFYCS--PHQGAGMVGQVTVN 168 (168)
Q Consensus 145 -~pG~Y~y~C~--~H~~~GM~G~I~V~ 168 (168)
.+|.|-|+|. .|...||-+.+.|.
T Consensus 497 ~~~g~~~~HCHiL~Hed~GMM~~~~V~ 523 (523)
T PRK10965 497 PKEHAYMAHCHLLEHEDTGMMLGFTVS 523 (523)
T ss_pred CCCCCEEEEeCchhhhccCccceeEeC
Confidence 4579999999 99999999999884
No 49
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=96.52 E-value=0.016 Score=47.73 Aligned_cols=66 Identities=20% Similarity=0.152 Sum_probs=47.5
Q ss_pred CeEEEcCCCEEEEE-eCCCCCeeEEEccCCCCCCccccccccccCccccCCCceEEEE--eCCceeEEEEcC-----CCC
Q 030950 86 SSFSVSSGEKIVFK-NNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVT--LTEKGTYSFYCS-----PHQ 157 (168)
Q Consensus 86 ~~itV~~GdtV~f~-N~d~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t~svt--F~~pG~Y~y~C~-----~H~ 157 (168)
+++.++.|..|+|. -.++.-|.+.+-+. |.. ...-||...++. +++||.|..+|+ +|.
T Consensus 140 n~lvlP~~~~v~~~~tS~DViHsf~ip~l----g~k----------~daiPG~~~~~~~~~~~~G~~~g~Cse~CG~~H~ 205 (227)
T MTH00098 140 NRVVLPMEMPIRMLISSEDVLHSWAVPSL----GLK----------TDAIPGRLNQTTLMSTRPGLYYGQCSEICGSNHS 205 (227)
T ss_pred ceEEecCCCEEEEEEEECccccccccccc----ccc----------eecCCCceEEEEEecCCcEEEEEECccccCcCcC
Confidence 57889999999883 33348899887543 221 122478766554 589999999999 676
Q ss_pred CCCcEEEEEe
Q 030950 158 GAGMVGQVTV 167 (168)
Q Consensus 158 ~~GM~G~I~V 167 (168)
.|...|.|
T Consensus 206 --~M~~~v~v 213 (227)
T MTH00098 206 --FMPIVLEL 213 (227)
T ss_pred --CceEEEEE
Confidence 69998876
No 50
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=96.44 E-value=0.019 Score=47.43 Aligned_cols=66 Identities=20% Similarity=0.162 Sum_probs=47.6
Q ss_pred CeEEEcCCCEEEEEe-CCCCCeeEEEccCCCCCCccccccccccCccccCCCceEEEE--eCCceeEEEEcC-----CCC
Q 030950 86 SSFSVSSGEKIVFKN-NAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVT--LTEKGTYSFYCS-----PHQ 157 (168)
Q Consensus 86 ~~itV~~GdtV~f~N-~d~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t~svt--F~~pG~Y~y~C~-----~H~ 157 (168)
+++.++.|..|+|.- .++.-|.+.+.+. |.. ...-||...++. +++||.|..+|+ +|.
T Consensus 140 n~lvlP~~~~v~~~~tS~DViHsf~ip~~----~~k----------~da~PG~~~~~~~~~~~~G~~~g~C~e~CG~~H~ 205 (230)
T MTH00129 140 HRMVVPVESPIRVLVSAEDVLHSWAVPAL----GVK----------MDAVPGRLNQTAFIASRPGVFYGQCSEICGANHS 205 (230)
T ss_pred ceEEEecCcEEEEEEEeCccccceecccc----CCc----------cccCCCceEEEEEEeCCceEEEEEChhhcccccc
Confidence 478899999998843 3348899887653 111 123488766554 589999999999 677
Q ss_pred CCCcEEEEEe
Q 030950 158 GAGMVGQVTV 167 (168)
Q Consensus 158 ~~GM~G~I~V 167 (168)
.|.+.|.|
T Consensus 206 --~M~~~v~v 213 (230)
T MTH00129 206 --FMPIVVEA 213 (230)
T ss_pred --CCcEEEEE
Confidence 79998876
No 51
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.43 E-value=0.015 Score=53.86 Aligned_cols=75 Identities=19% Similarity=0.305 Sum_probs=51.5
Q ss_pred CCeEEEcCCCEEEE--EeCCCCCeeEEEcc-------CCCCCCccccccccccCccccCCCceEEEEeC---CceeEEEE
Q 030950 85 PSSFSVSSGEKIVF--KNNAGFPHNVVFDE-------DEIPSGVDVSKISMSTEDLLNGPGETYAVTLT---EKGTYSFY 152 (168)
Q Consensus 85 P~~itV~~GdtV~f--~N~d~~~Hnv~~~~-------~~~P~g~~~~~~~~~~~~~~i~pG~t~svtF~---~pG~Y~y~ 152 (168)
=..|.+..||+|.+ .|.- ..++.+.= ..+-+| .. ...--|.||++|++.|+ +.|+|+|+
T Consensus 58 GP~I~~~~gD~ivV~v~N~~--~~~~sihWhGv~q~kn~w~DG-~~------~TqCPI~Pg~~~tY~F~v~~q~GT~~yh 128 (563)
T KOG1263|consen 58 GPTINAEEGDTIVVNVVNRL--DEPFSIHWHGVRQRKNPWQDG-VY------ITQCPIQPGENFTYRFTVKDQIGTLWYH 128 (563)
T ss_pred CCeEEEEeCCEEEEEEEeCC--CCceEEEeccccccCCccccC-Cc------cccCCcCCCCeEEEEEEeCCcceeEEEe
Confidence 36899999998765 5654 24443321 122233 11 01125789999999883 78999999
Q ss_pred cC--CCCCCCcEEEEEeC
Q 030950 153 CS--PHQGAGMVGQVTVN 168 (168)
Q Consensus 153 C~--~H~~~GM~G~I~V~ 168 (168)
-. .|++.|+.|-|+|.
T Consensus 129 ~h~~~~Ra~G~~G~liI~ 146 (563)
T KOG1263|consen 129 SHVSWQRATGVFGALIIN 146 (563)
T ss_pred eccccccccCceeEEEEc
Confidence 98 89999999999984
No 52
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=96.43 E-value=0.013 Score=47.69 Aligned_cols=83 Identities=16% Similarity=0.105 Sum_probs=56.1
Q ss_pred EEEEEEeecCCCceEe-C-------CeEEEcCCCEEEEEe-CCCCCeeEEEccCCCCCCccccccccccCccccCCCceE
Q 030950 69 AIEVLLGGDDGSLAFV-P-------SSFSVSSGEKIVFKN-NAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETY 139 (168)
Q Consensus 69 t~~V~~~~~~g~~~F~-P-------~~itV~~GdtV~f~N-~d~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t~ 139 (168)
.++|++.+.+=.+.|+ | +++.+++|..|+|.- .++.-|.|-+-... .. ...-||...
T Consensus 105 ~~~i~v~g~qw~W~~~Yp~~~~~~~n~l~iP~g~~v~~~ltS~DViHsf~vP~l~----~k----------~daiPG~~~ 170 (217)
T TIGR01432 105 PMVVYATSADWKWFFSYPDEHIETVNYLNIPKDRPVLFKLQSADTMTSFWIPQLG----GQ----------KYAMTGMTM 170 (217)
T ss_pred CeEEEEEEEeeeEEEEeCCCCcceeCcEEEECCCEEEEEEECCchhhhhhchhhC----ce----------eecCCCceE
Confidence 5777776532223333 3 589999999998843 33488998774431 11 122378765
Q ss_pred EE--EeCCceeEEEEcC-----CCCCCCcEEEEEe
Q 030950 140 AV--TLTEKGTYSFYCS-----PHQGAGMVGQVTV 167 (168)
Q Consensus 140 sv--tF~~pG~Y~y~C~-----~H~~~GM~G~I~V 167 (168)
.+ +.++||+|+-+|+ +|. .|...|.|
T Consensus 171 ~~~~~~~~~G~y~g~Cae~CG~~Hs--~M~~~v~v 203 (217)
T TIGR01432 171 NWYLQADQVGTYRGRNANFNGEGFA--DQTFDVNA 203 (217)
T ss_pred EEEEEeCCCEEEEEEehhhcCcccc--CCeEEEEE
Confidence 54 4589999999999 677 69999986
No 53
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=96.38 E-value=0.017 Score=47.84 Aligned_cols=65 Identities=15% Similarity=0.150 Sum_probs=47.3
Q ss_pred CeEEEcCCCEEEE--EeCCCCCeeEEEccCCCCCCccccccccccCccccCCCceEEE--EeCCceeEEEEcC-----CC
Q 030950 86 SSFSVSSGEKIVF--KNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAV--TLTEKGTYSFYCS-----PH 156 (168)
Q Consensus 86 ~~itV~~GdtV~f--~N~d~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t~sv--tF~~pG~Y~y~C~-----~H 156 (168)
+.+.++.|+.|++ +..| .-|.+.+-+. |.. ...-||...++ ++++||.|..+|+ +|
T Consensus 144 n~lvlP~~~~v~~~itS~D-ViHsf~vp~l----g~k----------~daiPG~~~~~~~~~~~~G~y~g~Cse~CG~~H 208 (234)
T MTH00051 144 NRLIVPIQTQVRVLVTAAD-VLHSFAVPSL----SVK----------IDAVPGRLNQTSFFIKRPGVFYGQCSEICGANH 208 (234)
T ss_pred eEEEEecCcEEEEEEEeCc-hhcccccccc----Cce----------eEccCCceEeEEEEeCCCEEEEEEChhhcCccc
Confidence 4688999999887 4555 8899887553 221 12347876554 5589999999999 67
Q ss_pred CCCCcEEEEEe
Q 030950 157 QGAGMVGQVTV 167 (168)
Q Consensus 157 ~~~GM~G~I~V 167 (168)
. .|...|.|
T Consensus 209 s--~M~i~v~v 217 (234)
T MTH00051 209 S--FMPIVIEG 217 (234)
T ss_pred c--cCeeEEEE
Confidence 7 69988875
No 54
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=96.35 E-value=0.024 Score=47.03 Aligned_cols=66 Identities=17% Similarity=0.211 Sum_probs=47.8
Q ss_pred CeEEEcCCCEEEEE-eCCCCCeeEEEccCCCCCCccccccccccCccccCCCceEEE--EeCCceeEEEEcC-----CCC
Q 030950 86 SSFSVSSGEKIVFK-NNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAV--TLTEKGTYSFYCS-----PHQ 157 (168)
Q Consensus 86 ~~itV~~GdtV~f~-N~d~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t~sv--tF~~pG~Y~y~C~-----~H~ 157 (168)
+++.++.|..|+|. ...+.-|.+.+-+. |... ..-||...++ ++++||.|.-+|+ +|.
T Consensus 151 n~lvlP~~~~v~~~~tS~DViHsf~iP~l----gvK~----------DaiPG~~n~~~~~~~~~G~y~g~C~e~CG~~Hs 216 (240)
T MTH00023 151 NRLVVPINTHVRILVTGADVLHSFAVPSL----GLKI----------DAVPGRLNQTGFFIKRPGVFYGQCSEICGANHS 216 (240)
T ss_pred ceEEEecCCEEEEEEEcCCcccceeeccc----Ccee----------ecCCCcceeEEEEcCCCEEEEEEchhhcCcCcc
Confidence 57899999999884 33458999988654 2211 2247775544 5689999999999 666
Q ss_pred CCCcEEEEEe
Q 030950 158 GAGMVGQVTV 167 (168)
Q Consensus 158 ~~GM~G~I~V 167 (168)
.|...|.|
T Consensus 217 --~M~~~v~v 224 (240)
T MTH00023 217 --FMPIVIEA 224 (240)
T ss_pred --CCeEEEEE
Confidence 69999876
No 55
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=96.34 E-value=0.027 Score=46.21 Aligned_cols=66 Identities=20% Similarity=0.142 Sum_probs=47.6
Q ss_pred CeEEEcCCCEEEEEe-CCCCCeeEEEccCCCCCCccccccccccCccccCCCceEEE--EeCCceeEEEEcC-----CCC
Q 030950 86 SSFSVSSGEKIVFKN-NAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAV--TLTEKGTYSFYCS-----PHQ 157 (168)
Q Consensus 86 ~~itV~~GdtV~f~N-~d~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t~sv--tF~~pG~Y~y~C~-----~H~ 157 (168)
+++.++.|..|+|.- ..+.-|.+.+-+.. ... ..-||..-++ ++++||.|..+|+ +|.
T Consensus 140 n~l~lP~~~~v~~~~tS~DViHsf~vP~l~----~K~----------DaiPG~~n~~~~~~~~~G~y~g~CsE~CG~~Hs 205 (226)
T MTH00139 140 NRLVLPYKSNIRALITAADVLHSWTVPSLG----VKI----------DAVPGRLNQVGFFINRPGVFYGQCSEICGANHS 205 (226)
T ss_pred ceEEEecCCEEEEEEecCccccceeccccC----ccc----------cCCCCcEEEEEEEcCCCEEEEEEChhhcCcCcC
Confidence 578999999998843 33589999875431 111 1237876554 4589999999999 677
Q ss_pred CCCcEEEEEe
Q 030950 158 GAGMVGQVTV 167 (168)
Q Consensus 158 ~~GM~G~I~V 167 (168)
.|...|.|
T Consensus 206 --~M~~~v~v 213 (226)
T MTH00139 206 --FMPIVVEA 213 (226)
T ss_pred --CCeEEEEE
Confidence 69988875
No 56
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=96.31 E-value=0.022 Score=46.78 Aligned_cols=66 Identities=20% Similarity=0.219 Sum_probs=47.2
Q ss_pred CeEEEcCCCEEEEE-eCCCCCeeEEEccCCCCCCccccccccccCccccCCCceEEE--EeCCceeEEEEcC-----CCC
Q 030950 86 SSFSVSSGEKIVFK-NNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAV--TLTEKGTYSFYCS-----PHQ 157 (168)
Q Consensus 86 ~~itV~~GdtV~f~-N~d~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t~sv--tF~~pG~Y~y~C~-----~H~ 157 (168)
+++.++.|.+|+|. ...+.-|.+.+-+. |.. ...-||...++ ++++||.|..+|+ +|.
T Consensus 140 n~l~lP~~~~v~~~~tS~DViHsf~vP~l----g~k----------~daiPG~~n~~~~~~~~~G~~~g~CsE~CG~~Hs 205 (225)
T MTH00168 140 NRLVLPMDSKIRVLVTSADVLHSWTLPSL----GLK----------MDAVPGRLNQLAFLSSRPGSFYGQCSEICGANHS 205 (225)
T ss_pred ceEEEecCCEEEEEEEeCChhhccccccc----ccc----------ccCCCCeEEEEEEEcCCCEEEEEEcccccCcCcC
Confidence 57899999999883 33348999887543 121 12237876554 5589999999999 677
Q ss_pred CCCcEEEEEe
Q 030950 158 GAGMVGQVTV 167 (168)
Q Consensus 158 ~~GM~G~I~V 167 (168)
.|...|.|
T Consensus 206 --~M~~~v~v 213 (225)
T MTH00168 206 --FMPIVVEF 213 (225)
T ss_pred --CCeEEEEE
Confidence 69998876
No 57
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=96.29 E-value=0.022 Score=46.89 Aligned_cols=66 Identities=20% Similarity=0.187 Sum_probs=47.5
Q ss_pred CeEEEcCCCEEEEEe-CCCCCeeEEEccCCCCCCccccccccccCccccCCCceEEE--EeCCceeEEEEcC-----CCC
Q 030950 86 SSFSVSSGEKIVFKN-NAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAV--TLTEKGTYSFYCS-----PHQ 157 (168)
Q Consensus 86 ~~itV~~GdtV~f~N-~d~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t~sv--tF~~pG~Y~y~C~-----~H~ 157 (168)
+++.++.|..|+|.- .++.-|.+.+-+. |... ..-||...++ ++++||.|.-.|+ +|.
T Consensus 140 n~l~lP~~~~v~~~~tS~DViHsf~vp~l----~~k~----------davPG~~~~~~~~~~~~G~y~g~Cse~CG~~H~ 205 (227)
T MTH00154 140 NRLVLPMNTQIRILITAADVIHSWTVPSL----GVKV----------DAVPGRLNQLNFLINRPGLFFGQCSEICGANHS 205 (227)
T ss_pred ceEEEecCCEEEEEEEcCchhhheecccc----CCee----------ecCCCceEEEEEEEcCceEEEEEeechhCcCcc
Confidence 478899999998843 3358999888543 1211 2237776554 5689999999999 676
Q ss_pred CCCcEEEEEe
Q 030950 158 GAGMVGQVTV 167 (168)
Q Consensus 158 ~~GM~G~I~V 167 (168)
.|...|.|
T Consensus 206 --~M~~~v~v 213 (227)
T MTH00154 206 --FMPIVIES 213 (227)
T ss_pred --CCeEEEEE
Confidence 69998875
No 58
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=96.24 E-value=0.032 Score=48.18 Aligned_cols=85 Identities=16% Similarity=0.206 Sum_probs=56.6
Q ss_pred ceEEEEEEeecCCCceEe-C-------CeEEEcCCCEEEEEeC-CCCCeeEEEccCCCCCCccccccccccCccccCCCc
Q 030950 67 AMAIEVLLGGDDGSLAFV-P-------SSFSVSSGEKIVFKNN-AGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGE 137 (168)
Q Consensus 67 a~t~~V~~~~~~g~~~F~-P-------~~itV~~GdtV~f~N~-d~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~ 137 (168)
...++|++.+.+=.+.|+ | +++.+++|..|+|.-. ++.-|.|-+-.. +.. ...-||.
T Consensus 124 ~~~l~I~Vvg~QW~W~f~YP~~gi~t~NeL~iP~g~pV~f~lTS~DViHSF~IP~L----g~K----------~damPG~ 189 (315)
T PRK10525 124 EKPITIEVVSMDWKWFFIYPEQGIATVNEIAFPANVPVYFKVTSNSVMNSFFIPRL----GSQ----------IYAMAGM 189 (315)
T ss_pred CCCeEEEEEEEeeeEEEEcCCCCceeeccEEEecCCEEEEEEEEchhhhhhhhhhh----CCe----------eecCCCc
Confidence 346777776542234442 3 6899999999998432 247898877543 111 1224777
Q ss_pred eEEE--EeCCceeEEEEcC-----CCCCCCcEEEEEe
Q 030950 138 TYAV--TLTEKGTYSFYCS-----PHQGAGMVGQVTV 167 (168)
Q Consensus 138 t~sv--tF~~pG~Y~y~C~-----~H~~~GM~G~I~V 167 (168)
..++ +++++|+|.-+|. +|. .|..+++|
T Consensus 190 ~n~l~~~a~~~G~Y~G~CaEyCG~gHs--~M~f~v~v 224 (315)
T PRK10525 190 QTRLHLIANEPGTYDGISASYSGPGFS--GMKFKAIA 224 (315)
T ss_pred eeEEEEEcCCCEEEEEEChhhcCcccc--CCeEEEEE
Confidence 6655 4589999999999 666 69999865
No 59
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.19 E-value=0.016 Score=51.87 Aligned_cols=89 Identities=25% Similarity=0.402 Sum_probs=58.5
Q ss_pred CceEeC--CeEEEcCCCEEEE--EeCCCCCeeEEEccCC--CCCCcc--ccccccccCccccCCCceEEEEe--CCceeE
Q 030950 80 SLAFVP--SSFSVSSGEKIVF--KNNAGFPHNVVFDEDE--IPSGVD--VSKISMSTEDLLNGPGETYAVTL--TEKGTY 149 (168)
Q Consensus 80 ~~~F~P--~~itV~~GdtV~f--~N~d~~~Hnv~~~~~~--~P~g~~--~~~~~~~~~~~~i~pG~t~svtF--~~pG~Y 149 (168)
+..|.+ ..+.++.|+.++| .|.+.+.|-+.+-... +-+.-. .....+-.+...+.+|+...+.| +.||.|
T Consensus 349 ~~~~~~~~~~~~~~~G~~~~~~i~n~~~~~HP~HlHg~~F~v~~~~~~~~~~~~~~kDTv~v~~~~~~~v~~~a~~~g~~ 428 (451)
T COG2132 349 GKAFDDNRVTLIAKAGTRERWVLTNDTPMPHPFHLHGHFFQVLSGDAPAPGAAPGWKDTVLVAPGERLLVRFDADYPGPW 428 (451)
T ss_pred CccCCCCcCceeecCCCEEEEEEECCCCCccCeEEcCceEEEEecCCCcccccCccceEEEeCCCeEEEEEEeCCCCCce
Confidence 456664 6778999999888 4666578877664321 000000 00000112335778998888877 579999
Q ss_pred EEEcC--CCCCCCcEEEEEeC
Q 030950 150 SFYCS--PHQGAGMVGQVTVN 168 (168)
Q Consensus 150 ~y~C~--~H~~~GM~G~I~V~ 168 (168)
.|+|. .|...||-+.+.|.
T Consensus 429 ~~HCH~l~H~~~Gm~~~~~v~ 449 (451)
T COG2132 429 MFHCHILEHEDNGMMGQFGVV 449 (451)
T ss_pred EEeccchhHhhcCCeeEEEec
Confidence 99999 99999999888773
No 60
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=96.18 E-value=0.029 Score=46.26 Aligned_cols=66 Identities=18% Similarity=0.179 Sum_probs=47.3
Q ss_pred CeEEEcCCCEEEEE-eCCCCCeeEEEccCCCCCCccccccccccCccccCCCceEEE--EeCCceeEEEEcC-----CCC
Q 030950 86 SSFSVSSGEKIVFK-NNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAV--TLTEKGTYSFYCS-----PHQ 157 (168)
Q Consensus 86 ~~itV~~GdtV~f~-N~d~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t~sv--tF~~pG~Y~y~C~-----~H~ 157 (168)
+++.++.|.+|++. ...+.-|.+.+-+. |... ..-||..-++ ++++||.|..+|+ +|.
T Consensus 140 n~lvlP~~~~v~~~~tS~DViHsf~iP~l----g~k~----------daiPG~~~~~~~~~~~~G~~~g~Cse~CG~~Hs 205 (229)
T MTH00038 140 NRLVLPYQTPIRVLVSSADVLHSWAVPSL----GVKM----------DAVPGRLNQTTFFISRTGLFYGQCSEICGANHS 205 (229)
T ss_pred ceEEEecCeEEEEEEEECCcccccccccc----Ccee----------ecCCCceEEEEEEcCCCEEEEEEcccccCcCcC
Confidence 58889999999884 33358999887543 2211 2247776554 4589999999999 676
Q ss_pred CCCcEEEEEe
Q 030950 158 GAGMVGQVTV 167 (168)
Q Consensus 158 ~~GM~G~I~V 167 (168)
-|...|.|
T Consensus 206 --~M~~~v~v 213 (229)
T MTH00038 206 --FMPIVIES 213 (229)
T ss_pred --CCeEEEEE
Confidence 69988875
No 61
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=96.06 E-value=0.033 Score=45.85 Aligned_cols=66 Identities=20% Similarity=0.150 Sum_probs=47.2
Q ss_pred CeEEEcCCCEEEEE-eCCCCCeeEEEccCCCCCCccccccccccCccccCCCceEEE--EeCCceeEEEEcC-----CCC
Q 030950 86 SSFSVSSGEKIVFK-NNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAV--TLTEKGTYSFYCS-----PHQ 157 (168)
Q Consensus 86 ~~itV~~GdtV~f~-N~d~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t~sv--tF~~pG~Y~y~C~-----~H~ 157 (168)
+++.++.|..|+|. -..+.-|.+.+-+. |.. ...-||....+ ++++||.|.-+|+ +|.
T Consensus 140 n~lvlP~~~~v~~~~tS~DViHsf~vP~l----g~K----------~DavPG~~n~~~~~~~~~G~y~g~CsE~CG~~Hs 205 (227)
T MTH00117 140 HRMVIPMESPIRILITAEDVLHSWAVPSL----GVK----------TDAVPGRLNQTSFITTRPGVFYGQCSEICGANHS 205 (227)
T ss_pred ceEEEecCceEEEEEEecchhhccccccc----Cce----------eEecCCceEEEEEEEcccceEEEEeccccccCcc
Confidence 57899999999884 33348899887543 221 12247876554 4589999999999 677
Q ss_pred CCCcEEEEEe
Q 030950 158 GAGMVGQVTV 167 (168)
Q Consensus 158 ~~GM~G~I~V 167 (168)
.|...|.|
T Consensus 206 --~M~~~v~v 213 (227)
T MTH00117 206 --FMPIVVES 213 (227)
T ss_pred --CCeEEEEE
Confidence 79988876
No 62
>PRK10883 FtsI repressor; Provisional
Probab=95.84 E-value=0.078 Score=48.01 Aligned_cols=102 Identities=19% Similarity=0.210 Sum_probs=59.6
Q ss_pred cceEEEEEEeec---CCCceEeCCe--EEEcCCCEEEEEeCCCCCeeEEEccCC--C--CCCccccccccccCccccCCC
Q 030950 66 NAMAIEVLLGGD---DGSLAFVPSS--FSVSSGEKIVFKNNAGFPHNVVFDEDE--I--PSGVDVSKISMSTEDLLNGPG 136 (168)
Q Consensus 66 ~a~t~~V~~~~~---~g~~~F~P~~--itV~~GdtV~f~N~d~~~Hnv~~~~~~--~--P~g~~~~~~~~~~~~~~i~pG 136 (168)
..++.++.++.+ -++-.|+++. ++++.|++.+|.....+.|-+.+-... + -+|...........|.++-++
T Consensus 350 ~~~~~~~~l~~~~~~INg~~~~~~~~~~~~~~g~~e~W~~~n~~~HP~HlHg~~FqVl~~~G~~~~~~~~gwkDTV~v~~ 429 (471)
T PRK10883 350 PIRSREISLGDDLPGINGALWDMNRIDVTAQQGTWERWTVRADMPQAFHIEGVMFLIRNVNGAMPFPEDRGWKDTVWVDG 429 (471)
T ss_pred CcceEEEEecCCcCccCCcccCCCcceeecCCCCEEEEEEECCCCcCEeECCccEEEEEecCCCCCccccCcCcEEEcCC
Confidence 345666666431 1245688765 579999999996544467876553210 0 011100000001233233344
Q ss_pred ceEE--EEeCCce----eEEEEcC--CCCCCCcEEEEEeC
Q 030950 137 ETYA--VTLTEKG----TYSFYCS--PHQGAGMVGQVTVN 168 (168)
Q Consensus 137 ~t~s--vtF~~pG----~Y~y~C~--~H~~~GM~G~I~V~ 168 (168)
+.+ +.|+.+| .|-|+|. .|...||-|.+.|.
T Consensus 430 -~v~i~~~f~~~~~~~~~~m~HCHiLeHeD~GMM~~~~V~ 468 (471)
T PRK10883 430 -QVELLVYFGQPSWAHFPFLFYSQTLEMADRGSIGQLLVN 468 (471)
T ss_pred -eEEEEEEecCCCCCCCcEEeecccccccccCCccCeEEe
Confidence 344 4688766 7999999 99999999999874
No 63
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=95.71 E-value=0.054 Score=44.66 Aligned_cols=67 Identities=19% Similarity=0.151 Sum_probs=47.1
Q ss_pred CCeEEEcCCCEEEEEe-CCCCCeeEEEccCCCCCCccccccccccCccccCCCceEEE--EeCCceeEEEEcC-----CC
Q 030950 85 PSSFSVSSGEKIVFKN-NAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAV--TLTEKGTYSFYCS-----PH 156 (168)
Q Consensus 85 P~~itV~~GdtV~f~N-~d~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t~sv--tF~~pG~Y~y~C~-----~H 156 (168)
.+++.++.|..|++.- ..+.-|.+.+-+. |... ..-||....+ .+++||.|.-+|+ +|
T Consensus 139 ~n~l~lP~~~~v~~~~tS~DViHsf~vP~l----g~k~----------da~PG~~n~~~~~~~~~G~~~g~C~e~CG~~H 204 (228)
T MTH00076 139 DNRMVVPMESPIRMLITAEDVLHSWAVPSL----GIKT----------DAIPGRLNQTSFIASRPGVYYGQCSEICGANH 204 (228)
T ss_pred CceEEEecCCEEEEEEEecccccccccccc----CceE----------EccCCcceeEEEEeCCcEEEEEEChhhcCccc
Confidence 3688899999998843 3348899887543 2211 2247765554 4589999999998 67
Q ss_pred CCCCcEEEEEe
Q 030950 157 QGAGMVGQVTV 167 (168)
Q Consensus 157 ~~~GM~G~I~V 167 (168)
. .|...|.|
T Consensus 205 s--~M~~~v~v 213 (228)
T MTH00076 205 S--FMPIVVEA 213 (228)
T ss_pred c--CCceEEEE
Confidence 7 79988875
No 64
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=95.66 E-value=0.073 Score=43.96 Aligned_cols=66 Identities=21% Similarity=0.178 Sum_probs=46.7
Q ss_pred CeEEEcCCCEEEEEe-CCCCCeeEEEccCCCCCCccccccccccCccccCCCceEEE--EeCCceeEEEEcC-----CCC
Q 030950 86 SSFSVSSGEKIVFKN-NAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAV--TLTEKGTYSFYCS-----PHQ 157 (168)
Q Consensus 86 ~~itV~~GdtV~f~N-~d~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t~sv--tF~~pG~Y~y~C~-----~H~ 157 (168)
+++.++.|..|++.- ..+.-|.+.+-+. |.. ...-||...++ ++++||.|..+|+ +|.
T Consensus 140 n~lvlP~~~~v~~~~tS~DViHsf~iP~l----g~k----------~daiPG~~~~~~~~~~~~G~~~g~Cse~CG~~Hs 205 (230)
T MTH00185 140 HRMVVPMESPIRVLITAEDVLHSWTVPAL----GVK----------MDAVPGRLNQATFIISRPGLYYGQCSEICGANHS 205 (230)
T ss_pred CeEEEecCCEEEEEEEcCccccccccccc----Cce----------eEecCCceEEEEEEeCCcEEEEEEchhhcCcCcC
Confidence 478899999998843 3348899887543 221 12347876655 4589999999999 677
Q ss_pred CCCcEEEEEe
Q 030950 158 GAGMVGQVTV 167 (168)
Q Consensus 158 ~~GM~G~I~V 167 (168)
.|...|.|
T Consensus 206 --~M~~~v~v 213 (230)
T MTH00185 206 --FMPIVVEA 213 (230)
T ss_pred --CCeEEEEE
Confidence 69888875
No 65
>MTH00080 COX2 cytochrome c oxidase subunit II; Provisional
Probab=95.39 E-value=0.08 Score=43.81 Aligned_cols=66 Identities=17% Similarity=0.155 Sum_probs=46.0
Q ss_pred CeEEEcCCCEEEEEe-CCCCCeeEEEccCCCCCCccccccccccCccccCCCceEEE--EeCCceeEEEEcC-----CCC
Q 030950 86 SSFSVSSGEKIVFKN-NAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAV--TLTEKGTYSFYCS-----PHQ 157 (168)
Q Consensus 86 ~~itV~~GdtV~f~N-~d~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t~sv--tF~~pG~Y~y~C~-----~H~ 157 (168)
+++.++.|..|+|.- ..+.-|.+.+-.. |... ..-||..-++ ++++||.|.-.|+ +|.
T Consensus 143 n~l~lP~~~~v~~~itS~DViHSf~vP~l----g~K~----------DavPGr~n~~~~~~~~~G~y~g~CsE~CG~~Hs 208 (231)
T MTH00080 143 NRCVLPCDTNIRFCITSSDVIHSWALPSL----SIKM----------DAMSGILSTLCYSFPMPGVFYGQCSEICGANHS 208 (231)
T ss_pred CceEeecCcEEEEEEEeCccccccccccc----Ccee----------eccCCceEEEEEEEcCceEEEEEehhhcCcCcc
Confidence 456899999998843 2348899887543 2211 1237765544 5689999999999 777
Q ss_pred CCCcEEEEEe
Q 030950 158 GAGMVGQVTV 167 (168)
Q Consensus 158 ~~GM~G~I~V 167 (168)
.|...|.|
T Consensus 209 --~M~~~v~v 216 (231)
T MTH00080 209 --FMPIAVEV 216 (231)
T ss_pred --CCEEEEEE
Confidence 79998875
No 66
>MTH00027 COX2 cytochrome c oxidase subunit II; Provisional
Probab=95.26 E-value=0.12 Score=43.54 Aligned_cols=66 Identities=17% Similarity=0.152 Sum_probs=46.5
Q ss_pred CeEEEcCCCEEEEE-eCCCCCeeEEEccCCCCCCccccccccccCccccCCCceEEE--EeCCceeEEEEcC-----CCC
Q 030950 86 SSFSVSSGEKIVFK-NNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAV--TLTEKGTYSFYCS-----PHQ 157 (168)
Q Consensus 86 ~~itV~~GdtV~f~-N~d~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t~sv--tF~~pG~Y~y~C~-----~H~ 157 (168)
+++.++.|..|+|. ...+.-|.|.+-+. |... ..-||...++ ++++||.|.-+|+ +|.
T Consensus 174 n~lvlP~~~~v~~~ltS~DViHSf~vP~l----gvK~----------DaiPGr~n~~~~~~~~~G~y~g~CsE~CG~~Hs 239 (262)
T MTH00027 174 NRLILPVDTNVRVLITAADVLHSWTVPSL----AVKM----------DAVPGRINETGFLIKRPGIFYGQCSEICGANHS 239 (262)
T ss_pred ceEEEeeCcEEEEEEEcCccccceecccc----cCcc----------cCCCCceeeEEEEcCCcEEEEEEcchhcCcCcC
Confidence 47889999999884 33458899887543 2211 1237765544 5689999999999 666
Q ss_pred CCCcEEEEEe
Q 030950 158 GAGMVGQVTV 167 (168)
Q Consensus 158 ~~GM~G~I~V 167 (168)
.|...|.|
T Consensus 240 --~Mpi~v~v 247 (262)
T MTH00027 240 --FMPIVVES 247 (262)
T ss_pred --CCeEEEEE
Confidence 79988875
No 67
>COG4633 Plastocyanin domain containing protein [General function prediction only]
Probab=95.15 E-value=0.054 Score=44.92 Aligned_cols=73 Identities=21% Similarity=0.349 Sum_probs=47.2
Q ss_pred ceEeCCeEEEcCCCEEEEEeC--CCCCeeEEEccCCCCCCccccccccccCccccCCCceEEEEeC--CceeEEEEcCCC
Q 030950 81 LAFVPSSFSVSSGEKIVFKNN--AGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLT--EKGTYSFYCSPH 156 (168)
Q Consensus 81 ~~F~P~~itV~~GdtV~f~N~--d~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t~svtF~--~pG~Y~y~C~~H 156 (168)
+.|.|..|.|..|..++.+.. |..+.- ++..+|+ + .+ +. .++.++.+++.|+ .+|+|.|.|...
T Consensus 92 gGy~p~~IvV~~~v~~rl~f~Rkdpspcl---e~i~~pd-f---gi---aa--nlpl~q~ssIe~T~~s~ge~af~cgmn 159 (272)
T COG4633 92 GGYIPSRIVVVDGVPVRLTFKRKDPSPCL---ESIMSPD-F---GI---AA--NLPLNQVSSIEFTPISKGEYAFLCGMN 159 (272)
T ss_pred CCccceeEEEecCcceEeeeccCCCCcch---hhccccc-c---cc---cc--cCCcCceeEEEeccccccchhhhcchh
Confidence 578999999999998766543 432221 1111121 1 00 11 3467788888884 789999999855
Q ss_pred CCCCcEEEEEeC
Q 030950 157 QGAGMVGQVTVN 168 (168)
Q Consensus 157 ~~~GM~G~I~V~ 168 (168)
. |+|.+.|+
T Consensus 160 m---~~G~~~ve 168 (272)
T COG4633 160 M---FRGNIQVE 168 (272)
T ss_pred h---ccCeeEEE
Confidence 5 77888774
No 68
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=94.43 E-value=0.12 Score=44.24 Aligned_cols=85 Identities=13% Similarity=0.099 Sum_probs=48.9
Q ss_pred EeCCeEEEcCCCEEEE--EeCCC-CCeeEEEccCC----CCCCccccccccccCccccCCCceEEEE--eCCceeEEEEc
Q 030950 83 FVPSSFSVSSGEKIVF--KNNAG-FPHNVVFDEDE----IPSGVDVSKISMSTEDLLNGPGETYAVT--LTEKGTYSFYC 153 (168)
Q Consensus 83 F~P~~itV~~GdtV~f--~N~d~-~~Hnv~~~~~~----~P~g~~~~~~~~~~~~~~i~pG~t~svt--F~~pG~Y~y~C 153 (168)
+.| .+++++|+.++| .|.+. ..+.+.+.... ..+|.-........+...+.||+.+.+. +++||.|.+.|
T Consensus 200 ~~~-~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~~DG~~~~~~~~~~~~~~i~PG~R~dv~v~~~~pG~y~~~~ 278 (311)
T TIGR02376 200 LTG-DNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYVWVTGKFANPPNRDVETWFIPGGSAAAALYTFEQPGVYAYVD 278 (311)
T ss_pred CCC-CcccccCCcEEEEEEcCCCCCCCCCeEecCCceEEEECCcccCCCCCCcceEEECCCceEEEEEEeCCCeEEEEEC
Confidence 444 578999998766 67653 22333333210 0011100000000234678999998764 57899999999
Q ss_pred C--CCC-CCCcEEEEEeC
Q 030950 154 S--PHQ-GAGMVGQVTVN 168 (168)
Q Consensus 154 ~--~H~-~~GM~G~I~V~ 168 (168)
. .|. ..|+.|.|.|+
T Consensus 279 ~~~~~~~~~g~~~~i~~~ 296 (311)
T TIGR02376 279 HNLIEAFEKGAAAQVKVE 296 (311)
T ss_pred cHHHHHHhCCCEEEEEEC
Confidence 7 343 45888988774
No 69
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=94.15 E-value=0.14 Score=39.33 Aligned_cols=69 Identities=28% Similarity=0.462 Sum_probs=42.5
Q ss_pred eCCeEEEcCCCEEEE--EeCCC-CCeeEEEccCCC----CCCccccccccccCccccCCCceEEE--EeCC-ceeEEEEc
Q 030950 84 VPSSFSVSSGEKIVF--KNNAG-FPHNVVFDEDEI----PSGVDVSKISMSTEDLLNGPGETYAV--TLTE-KGTYSFYC 153 (168)
Q Consensus 84 ~P~~itV~~GdtV~f--~N~d~-~~Hnv~~~~~~~----P~g~~~~~~~~~~~~~~i~pG~t~sv--tF~~-pG~Y~y~C 153 (168)
.+..+.+++|++++| .|.+. ..|++.+++..+ -+|.... .+..+.+.+.+|+.+++ +.++ +|.|++.+
T Consensus 58 ~~~~~~v~~g~~~rlRliNa~~~~~~~~~i~gh~~~Via~DG~~v~--p~~~~~l~l~~G~R~dvlv~~~~~~g~y~i~~ 135 (159)
T PF00394_consen 58 EPPVIKVKPGERYRLRLINAGASTSFNFSIDGHPMTVIAADGVPVE--PYKVDTLVLAPGQRYDVLVTADQPPGNYWIRA 135 (159)
T ss_dssp TSGEEEEETTTEEEEEEEEESSS-BEEEEETTBCEEEEEETTEEEE--EEEESBEEE-TTEEEEEEEEECSCSSEEEEEE
T ss_pred ccceEEEcCCcEEEEEEEeccCCeeEEEEeeccceeEeeecccccc--ccccceEEeeCCeEEEEEEEeCCCCCeEEEEE
Confidence 367999999998866 67664 345555554310 1222111 11234578899999886 4566 89999999
Q ss_pred C
Q 030950 154 S 154 (168)
Q Consensus 154 ~ 154 (168)
.
T Consensus 136 ~ 136 (159)
T PF00394_consen 136 S 136 (159)
T ss_dssp E
T ss_pred e
Confidence 3
No 70
>PLN02835 oxidoreductase
Probab=93.89 E-value=0.35 Score=44.57 Aligned_cols=82 Identities=12% Similarity=0.029 Sum_probs=50.7
Q ss_pred CeEEEcCCCEEEE--EeCCCCCe-------eEEEccCCCCCCccc---cccc----cccCccccCCCceEEEEe--CCce
Q 030950 86 SSFSVSSGEKIVF--KNNAGFPH-------NVVFDEDEIPSGVDV---SKIS----MSTEDLLNGPGETYAVTL--TEKG 147 (168)
Q Consensus 86 ~~itV~~GdtV~f--~N~d~~~H-------nv~~~~~~~P~g~~~---~~~~----~~~~~~~i~pG~t~svtF--~~pG 147 (168)
+.+.++.|+.|+| .|.+...| +|.+.... ...++. ..++ +-.+...+.+++-..+.| +.||
T Consensus 411 ~~~~~~~~~~Veivi~N~~~~~HP~HLHGh~F~Vlg~G-~g~~~~~~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDNPG 489 (539)
T PLN02835 411 SVMQTSLHDFLEVVFQNNEKTMQSWHLDGYDFWVVGYG-SGQWTPAKRSLYNLVDALTRHTAQVYPKSWTTILVSLDNQG 489 (539)
T ss_pred eEEEcCCCCEEEEEEECCCCCCCCCCCCCccEEEEecc-CCCCCcccccccCCCCCCccceEEeCCCCEEEEEEECcCCE
Confidence 3456778887755 66665556 55443211 000110 0011 112334566777667788 6899
Q ss_pred eEEEEcC--CCCCCCcEEEEEeC
Q 030950 148 TYSFYCS--PHQGAGMVGQVTVN 168 (168)
Q Consensus 148 ~Y~y~C~--~H~~~GM~G~I~V~ 168 (168)
.+.|+|. .|...||...+.|+
T Consensus 490 ~Wl~HCHi~~H~~~Gm~~~~~V~ 512 (539)
T PLN02835 490 MWNMRSAIWERQYLGQQFYLRVW 512 (539)
T ss_pred EeeeeecchhhhhcccEEEEEEc
Confidence 9999999 89989999999875
No 71
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=89.62 E-value=0.46 Score=26.05 Aligned_cols=20 Identities=40% Similarity=0.312 Sum_probs=15.2
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q 030950 40 KLSIKATLKDVGVAVAATAA 59 (168)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~ 59 (168)
++|||..||..+++.++.++
T Consensus 1 ~~sRR~fLk~~~a~~a~~~~ 20 (26)
T PF10518_consen 1 NLSRRQFLKGGAAAAAAAAL 20 (26)
T ss_pred CCcHHHHHHHHHHHHHHHHh
Confidence 58999999998776665543
No 72
>PLN02792 oxidoreductase
Probab=89.35 E-value=2.6 Score=38.90 Aligned_cols=82 Identities=13% Similarity=0.030 Sum_probs=47.5
Q ss_pred CeEEEcCCCEEEE--EeCCCCCe-------eEEEccCCCCCCccc---cccc----cccCccccCCCceEEEEe--CCce
Q 030950 86 SSFSVSSGEKIVF--KNNAGFPH-------NVVFDEDEIPSGVDV---SKIS----MSTEDLLNGPGETYAVTL--TEKG 147 (168)
Q Consensus 86 ~~itV~~GdtV~f--~N~d~~~H-------nv~~~~~~~P~g~~~---~~~~----~~~~~~~i~pG~t~svtF--~~pG 147 (168)
+.+.++-|+.|.+ .|.+...| +|-+.... ...++. ...+ +-.+...+.++.=..++| +.||
T Consensus 403 ~v~~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~G-~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNPG 481 (536)
T PLN02792 403 SVMGAHHNAFLEIIFQNREKIVQSYHLDGYNFWVVGIN-KGIWSRASRREYNLKDAISRSTTQVYPESWTAVYVALDNVG 481 (536)
T ss_pred eEEEcCCCCEEEEEEECCCCCCCCeeeCCCceEEEeec-CCCCCcccccccCcCCCCccceEEECCCCEEEEEEEeeCCE
Confidence 4567888998765 56555556 44332210 001110 0111 111224455555445666 7899
Q ss_pred eEEEEcC--CCCCCCcEEEEEeC
Q 030950 148 TYSFYCS--PHQGAGMVGQVTVN 168 (168)
Q Consensus 148 ~Y~y~C~--~H~~~GM~G~I~V~ 168 (168)
.+.|+|. .|...||.-.++|+
T Consensus 482 vW~~HCh~~~h~~~Gm~~~~~v~ 504 (536)
T PLN02792 482 MWNLRSQFWARQYLGQQFYLRVY 504 (536)
T ss_pred EEeeeEcchhccccceEEEEEEc
Confidence 9999999 67778999988874
No 73
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=88.31 E-value=4 Score=32.49 Aligned_cols=55 Identities=20% Similarity=0.299 Sum_probs=29.3
Q ss_pred EEEeCCC-CCeeEEEccCCCC-CCccccccccccCccccCCCceEEEEe----CCceeEEE
Q 030950 97 VFKNNAG-FPHNVVFDEDEIP-SGVDVSKISMSTEDLLNGPGETYAVTL----TEKGTYSF 151 (168)
Q Consensus 97 ~f~N~d~-~~Hnv~~~~~~~P-~g~~~~~~~~~~~~~~i~pG~t~svtF----~~pG~Y~y 151 (168)
++.|.+. ..++|.+.++.+| ++++.-.......=..++||++.++.| .+.|.|.+
T Consensus 45 ~iyN~G~~~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p~~~G~f~~ 105 (181)
T PF05753_consen 45 TIYNVGSSAAYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVVRPKKSGYFNF 105 (181)
T ss_pred EEEECCCCeEEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEEeeeeeEEEEc
Confidence 4467764 5778887775555 333321100000102568888776554 45677665
No 74
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=88.21 E-value=1.2 Score=40.77 Aligned_cols=73 Identities=19% Similarity=0.191 Sum_probs=46.5
Q ss_pred eEEEEEEeecCCCceEeCCeEEEcCCCEEEE--EeCCC---CCeeEEEccCCCCCCccccccccccCccccCCCceEEEE
Q 030950 68 MAIEVLLGGDDGSLAFVPSSFSVSSGEKIVF--KNNAG---FPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVT 142 (168)
Q Consensus 68 ~t~~V~~~~~~g~~~F~P~~itV~~GdtV~f--~N~d~---~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t~svt 142 (168)
+...+.|.+ |+-.|.-...+++.++.++| +|.|. .-||+...++. . |.....+.|-..++.
T Consensus 532 mk~n~vvr~--g~kv~v~~~staps~~l~ef~Vkq~DEVt~l~tnld~Ved~----t--------hgfv~p~~~v~~~v~ 597 (637)
T COG4263 532 MKVNVVVRS--GNKVRVYMTSTAPSFGLTEFKVKQGDEVTVLTTNLDEVEDL----T--------HGFVIPNYGVNMEVK 597 (637)
T ss_pred ccceeEEec--CCceEEEEeeccCCCceEEEEEecCcEEEEEecccceeccc----c--------ceeeeccCceEEEEc
Confidence 456667763 57788888999999998777 56553 45555544431 1 111122344444444
Q ss_pred eCCceeEEEEcC
Q 030950 143 LTEKGTYSFYCS 154 (168)
Q Consensus 143 F~~pG~Y~y~C~ 154 (168)
..++|.|+|||+
T Consensus 598 pq~tasvtf~a~ 609 (637)
T COG4263 598 PQRTASVTFYAD 609 (637)
T ss_pred cCCceEEEEEcc
Confidence 578999999999
No 75
>PLN02168 copper ion binding / pectinesterase
Probab=87.11 E-value=4 Score=37.83 Aligned_cols=81 Identities=11% Similarity=-0.026 Sum_probs=47.6
Q ss_pred CeEEEcCCCEEEE--EeCCCCCe-------eEEEccCCCCCCccc---cccc----cccCccccCCCceEEEEe--CCce
Q 030950 86 SSFSVSSGEKIVF--KNNAGFPH-------NVVFDEDEIPSGVDV---SKIS----MSTEDLLNGPGETYAVTL--TEKG 147 (168)
Q Consensus 86 ~~itV~~GdtV~f--~N~d~~~H-------nv~~~~~~~P~g~~~---~~~~----~~~~~~~i~pG~t~svtF--~~pG 147 (168)
+.++++-|+.|.| .|.+...| +|-+.... ...++. ..++ +-.+...+.+|.=..++| +.||
T Consensus 415 ~v~~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~g-~g~~~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG 493 (545)
T PLN02168 415 SVVDIHYKDFYHIVFQNPLFSLESYHIDGYNFFVVGYG-FGAWSESKKAGYNLVDAVSRSTVQVYPYSWTAILIAMDNQG 493 (545)
T ss_pred eEEEecCCCEEEEEEeCCCCCCCCeeeCCCceEEEECC-CCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEccCCe
Confidence 3467888998766 56665556 44333211 011110 0111 112234556666556777 7899
Q ss_pred eEEEEcCC--CCCCCcEEEEEe
Q 030950 148 TYSFYCSP--HQGAGMVGQVTV 167 (168)
Q Consensus 148 ~Y~y~C~~--H~~~GM~G~I~V 167 (168)
.+.|+|.. |+..||-..++|
T Consensus 494 ~Wl~HCHi~~~~h~g~gl~~~v 515 (545)
T PLN02168 494 MWNVRSQKAEQWYLGQELYMRV 515 (545)
T ss_pred EEeeeecCcccceecCcEEEEE
Confidence 99999994 887788777766
No 76
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=86.91 E-value=4 Score=37.57 Aligned_cols=37 Identities=19% Similarity=0.233 Sum_probs=29.9
Q ss_pred cccCCCceEEEEe--CCceeEEEEcC--CCCCCCcEEEEEe
Q 030950 131 LLNGPGETYAVTL--TEKGTYSFYCS--PHQGAGMVGQVTV 167 (168)
Q Consensus 131 ~~i~pG~t~svtF--~~pG~Y~y~C~--~H~~~GM~G~I~V 167 (168)
..+.++.-..+.| +.||.+-|+|. .|.+.||...+++
T Consensus 479 v~vp~~g~vvirf~adNPG~W~~HCHi~~H~~~Gm~~~~~~ 519 (539)
T TIGR03389 479 VGVPTGGWAAIRFVADNPGVWFMHCHLEVHTTWGLKMAFLV 519 (539)
T ss_pred EEcCCCceEEEEEecCCCeEEEEEecccchhhhcceEEEEE
Confidence 4556666556777 78999999999 9999999888865
No 77
>PLN02354 copper ion binding / oxidoreductase
Probab=86.75 E-value=4.6 Score=37.46 Aligned_cols=82 Identities=13% Similarity=0.120 Sum_probs=46.7
Q ss_pred CCeEEEcCCCEEEE--EeCCCCCe-------eEEEccCCCCCCccc---cccc----cccCccccCCCceEEEEe--CCc
Q 030950 85 PSSFSVSSGEKIVF--KNNAGFPH-------NVVFDEDEIPSGVDV---SKIS----MSTEDLLNGPGETYAVTL--TEK 146 (168)
Q Consensus 85 P~~itV~~GdtV~f--~N~d~~~H-------nv~~~~~~~P~g~~~---~~~~----~~~~~~~i~pG~t~svtF--~~p 146 (168)
.+.+.++.|+.|.+ .|.+..+| +|-+.... ...++. ..++ +-.+...+.++.=..++| +.|
T Consensus 417 ~~v~~~~~~~~VeiVi~n~~~~~HP~HLHGh~F~Vlg~G-~G~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDNP 495 (552)
T PLN02354 417 PNVLNITFRTFVEIIFENHEKSMQSWHLDGYSFFAVAVE-PGTWTPEKRKNYNLLDAVSRHTVQVYPKSWAAILLTFDNA 495 (552)
T ss_pred CeeEEcCCCCEEEEEEeCCCCCCCCCcCCCccEEEEeec-CCCCCccccccCCcCCCCccceEEeCCCCeEEEEEEecCC
Confidence 34677888998766 56665566 55443211 011110 0111 111224455555445677 789
Q ss_pred eeEEEEcC--CCCCCCcEEEEEe
Q 030950 147 GTYSFYCS--PHQGAGMVGQVTV 167 (168)
Q Consensus 147 G~Y~y~C~--~H~~~GM~G~I~V 167 (168)
|.+.|+|. .|...||...++|
T Consensus 496 GvW~~HCHi~~H~~~g~~l~~~v 518 (552)
T PLN02354 496 GMWNIRSENWERRYLGQQLYASV 518 (552)
T ss_pred eEEeeeccccccccccceEEEEE
Confidence 99999999 5556688777765
No 78
>PLN02991 oxidoreductase
Probab=84.91 E-value=6.8 Score=36.35 Aligned_cols=38 Identities=16% Similarity=0.087 Sum_probs=29.0
Q ss_pred cccCCCceEEEEe--CCceeEEEEcC--CCCCCCcEEEEEeC
Q 030950 131 LLNGPGETYAVTL--TEKGTYSFYCS--PHQGAGMVGQVTVN 168 (168)
Q Consensus 131 ~~i~pG~t~svtF--~~pG~Y~y~C~--~H~~~GM~G~I~V~ 168 (168)
..+.++.=..++| +.||.+.|+|. .|...||.-.++|+
T Consensus 470 v~vp~~Gw~vIRF~aDNPG~W~~HCHi~~h~~~gm~~~~~v~ 511 (543)
T PLN02991 470 VQVYPRSWTAIYVSLDNVGMWNLRSELWERQYLGQQFYMRVY 511 (543)
T ss_pred EEECCCCEEEEEEECCCCEEeeeeeCccccccccEEEEEEec
Confidence 4455555455676 78999999999 77888998887764
No 79
>PRK05089 cytochrome C oxidase assembly protein; Provisional
Probab=84.68 E-value=19 Score=28.98 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=24.9
Q ss_pred eEEEEEEeecC---CCceEeC--CeEEEcCCCEEE--E--EeCCC
Q 030950 68 MAIEVLLGGDD---GSLAFVP--SSFSVSSGEKIV--F--KNNAG 103 (168)
Q Consensus 68 ~t~~V~~~~~~---g~~~F~P--~~itV~~GdtV~--f--~N~d~ 103 (168)
+.++|+...+. -.|.|.| ..++|++|++.. + +|..+
T Consensus 63 R~I~V~F~a~~~~~lpW~F~P~q~~v~V~pGE~~~~~y~a~N~sd 107 (188)
T PRK05089 63 RTITVEFDANVNGGLPWEFKPEQRSVDVHPGELNLVFYEAENLSD 107 (188)
T ss_pred cEEEEEEeccCCCCCCceEEeeeeEEEEcCCCeEEEEEEEECCCC
Confidence 57777775432 2689999 578899999653 3 67654
No 80
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=84.68 E-value=1.2 Score=30.00 Aligned_cols=60 Identities=35% Similarity=0.484 Sum_probs=25.4
Q ss_pred EcCCCEE----EEEeCCCCC-eeEEEccCCCCCCccccccccccCccccCCCceEEEEeC-------CceeEEEE
Q 030950 90 VSSGEKI----VFKNNAGFP-HNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLT-------EKGTYSFY 152 (168)
Q Consensus 90 V~~GdtV----~f~N~d~~~-Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t~svtF~-------~pG~Y~y~ 152 (168)
|.+|+++ +++|.+..+ .++.+.- ..|+|-... ... ..-..+.||++.+++|. .+|.|.+.
T Consensus 1 v~~G~~~~~~~tv~N~g~~~~~~v~~~l-~~P~GW~~~-~~~-~~~~~l~pG~s~~~~~~V~vp~~a~~G~y~v~ 72 (78)
T PF10633_consen 1 VTPGETVTVTLTVTNTGTAPLTNVSLSL-SLPEGWTVS-ASP-ASVPSLPPGESVTVTFTVTVPADAAPGTYTVT 72 (78)
T ss_dssp --TTEEEEEEEEEE--SSS-BSS-EEEE-E--TTSE----EE-EEE--B-TTSEEEEEEEEEE-TT--SEEEEEE
T ss_pred CCCCCEEEEEEEEEECCCCceeeEEEEE-eCCCCcccc-CCc-cccccCCCCCEEEEEEEEECCCCCCCceEEEE
Confidence 4677754 447876432 4444321 236665410 000 11126799998887762 57998764
No 81
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=82.47 E-value=6.2 Score=36.36 Aligned_cols=37 Identities=24% Similarity=0.350 Sum_probs=29.2
Q ss_pred cccCCCceEEEEe--CCceeEEEEcC--CCCCCCcEEEEEe
Q 030950 131 LLNGPGETYAVTL--TEKGTYSFYCS--PHQGAGMVGQVTV 167 (168)
Q Consensus 131 ~~i~pG~t~svtF--~~pG~Y~y~C~--~H~~~GM~G~I~V 167 (168)
..+.++.-..++| +.||.+-|+|. .|.+.||-..+..
T Consensus 483 v~vp~~gwvvIRF~adNPG~W~~HCHi~~H~~~GM~~~~~e 523 (541)
T TIGR03388 483 VVIFPYGWTALRFVADNPGVWAFHCHIEPHLHMGMGVVFAE 523 (541)
T ss_pred EEeCCCceEEEEEECCCCeEeeeeccchhhhhcccEEEEec
Confidence 4556666556777 68999999999 9999999877753
No 82
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=82.09 E-value=14 Score=25.55 Aligned_cols=66 Identities=20% Similarity=0.369 Sum_probs=40.0
Q ss_pred ceEeCCeE---EEcCCC----EEEEEeCCCCCeeEEEccCCCCCCccccccccccCccccCCCceEEE--EeC---Ccee
Q 030950 81 LAFVPSSF---SVSSGE----KIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAV--TLT---EKGT 148 (168)
Q Consensus 81 ~~F~P~~i---tV~~Gd----tV~f~N~d~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t~sv--tF~---~pG~ 148 (168)
+.++|..| .+..|+ +|+++|.+..+..|.+...... .+...+ ......+.||++.++ +|. ..|.
T Consensus 4 l~v~P~~ldFG~v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~--~~~~~v--~~~~g~l~PG~~~~~~V~~~~~~~~g~ 79 (102)
T PF14874_consen 4 LEVSPKELDFGNVFVGQTYSRTVTLTNTSSIPARFRVRQPESL--SSFFSV--EPPSGFLAPGESVELEVTFSPTKPLGD 79 (102)
T ss_pred EEEeCCEEEeeEEccCCEEEEEEEEEECCCCCEEEEEEeCCcC--CCCEEE--ECCCCEECCCCEEEEEEEEEeCCCCce
Confidence 45677766 468888 4677999988877766432101 111112 223457899997764 564 5687
Q ss_pred EE
Q 030950 149 YS 150 (168)
Q Consensus 149 Y~ 150 (168)
|.
T Consensus 80 ~~ 81 (102)
T PF14874_consen 80 YE 81 (102)
T ss_pred EE
Confidence 74
No 83
>PTZ00128 cytochrome c oxidase assembly protein-like; Provisional
Probab=76.88 E-value=42 Score=27.93 Aligned_cols=36 Identities=25% Similarity=0.391 Sum_probs=24.6
Q ss_pred eEEEEEEeec---CCCceEeC--CeEEEcCCCEEE--E--EeCCC
Q 030950 68 MAIEVLLGGD---DGSLAFVP--SSFSVSSGEKIV--F--KNNAG 103 (168)
Q Consensus 68 ~t~~V~~~~~---~g~~~F~P--~~itV~~GdtV~--f--~N~d~ 103 (168)
+.++|+..++ +-.|.|.| ..++|++|++.. + +|..+
T Consensus 107 R~I~V~F~a~v~~~lpW~F~P~q~~v~V~pGE~~lv~Y~a~N~sd 151 (232)
T PTZ00128 107 RLIKIRFLADTGSTMPWEFEPLQKEVEVLPGETALAFYRAKNRSD 151 (232)
T ss_pred eEEEEEEeccCCCCCCceEEeeeeEEEEcCCCeEEEEEEEECCCC
Confidence 5667776532 23799999 578999999653 2 67654
No 84
>PLN02191 L-ascorbate oxidase
Probab=74.10 E-value=24 Score=32.84 Aligned_cols=36 Identities=25% Similarity=0.344 Sum_probs=27.9
Q ss_pred cccCCCceEEEEe--CCceeEEEEcC--CCCCCCcEEEEE
Q 030950 131 LLNGPGETYAVTL--TEKGTYSFYCS--PHQGAGMVGQVT 166 (168)
Q Consensus 131 ~~i~pG~t~svtF--~~pG~Y~y~C~--~H~~~GM~G~I~ 166 (168)
..+.++.=..++| +.||.+.|+|. .|.+.||...+.
T Consensus 506 v~vp~~Gw~vIRf~aDNPG~Wl~HCHi~~Hl~~Gm~~~~~ 545 (574)
T PLN02191 506 AILYPYGWTAIRFVTDNPGVWFFHCHIEPHLHMGMGVVFA 545 (574)
T ss_pred EEeCCCCEEEEEEECCCCEEEEEecCchhhhhcCCEEEEe
Confidence 4555665445667 78999999999 999999977664
No 85
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=73.21 E-value=15 Score=27.83 Aligned_cols=23 Identities=39% Similarity=0.587 Sum_probs=18.6
Q ss_pred ccCCCceEEEEe------CCceeEEEEcC
Q 030950 132 LNGPGETYAVTL------TEKGTYSFYCS 154 (168)
Q Consensus 132 ~i~pG~t~svtF------~~pG~Y~y~C~ 154 (168)
-+.||+++++.| ...|.|.|.|+
T Consensus 98 PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~ 126 (146)
T PF10989_consen 98 PVPPGTTVTVVLSPVRNPRSGGTYQFNVT 126 (146)
T ss_pred CCCCCCEEEEEEEeeeCCCCCCeEEEEEE
Confidence 357999998877 24599999999
No 86
>COG1470 Predicted membrane protein [Function unknown]
Probab=72.57 E-value=9.9 Score=34.87 Aligned_cols=69 Identities=19% Similarity=0.303 Sum_probs=44.8
Q ss_pred CeEEEcCCCE----EEEEeCCCCCeeEEEccCCCCCCccccccc--cccCccccCCCceEEEEe-------CCceeEEEE
Q 030950 86 SSFSVSSGEK----IVFKNNAGFPHNVVFDEDEIPSGVDVSKIS--MSTEDLLNGPGETYAVTL-------TEKGTYSFY 152 (168)
Q Consensus 86 ~~itV~~Gdt----V~f~N~d~~~Hnv~~~~~~~P~g~~~~~~~--~~~~~~~i~pG~t~svtF-------~~pG~Y~y~ 152 (168)
-.+.+.++++ |.+.|.+..+.+....-...|++....... ..-+.+.+.||++..++. .+||+|.+.
T Consensus 276 ~~~~i~~~~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL~~gE~kdvtleV~ps~na~pG~Ynv~ 355 (513)
T COG1470 276 IYLEISPSTTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKLKPGEEKDVTLEVYPSLNATPGTYNVT 355 (513)
T ss_pred ceeEEccCCceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEecCCCceEEEEEEecCCCCCCCceeEE
Confidence 3467888886 455787776777666554567776543221 112346789999887765 278999986
Q ss_pred cC
Q 030950 153 CS 154 (168)
Q Consensus 153 C~ 154 (168)
-.
T Consensus 356 I~ 357 (513)
T COG1470 356 IT 357 (513)
T ss_pred EE
Confidence 54
No 87
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=72.28 E-value=7.8 Score=30.38 Aligned_cols=36 Identities=14% Similarity=0.227 Sum_probs=25.9
Q ss_pred eEeCCeEEEcCCCE--EEEEeCCCCCeeEEEccCCCCCCcc
Q 030950 82 AFVPSSFSVSSGEK--IVFKNNAGFPHNVVFDEDEIPSGVD 120 (168)
Q Consensus 82 ~F~P~~itV~~Gdt--V~f~N~d~~~Hnv~~~~~~~P~g~~ 120 (168)
.++|+.++++||+. ++|+|.....|.+... +|.+++
T Consensus 110 ~d~~~~v~L~PG~s~elvv~ft~~g~ye~~C~---iPGHy~ 147 (158)
T COG4454 110 HDDPNTVTLAPGKSGELVVVFTGAGKYEFACN---IPGHYE 147 (158)
T ss_pred cCCcceeEeCCCCcEEEEEEecCCccEEEEec---CCCccc
Confidence 36799999999995 5667887677887663 454443
No 88
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=71.95 E-value=19 Score=23.18 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=18.5
Q ss_pred ccCCCceEEEEeCCceeEEEEcC
Q 030950 132 LNGPGETYAVTLTEKGTYSFYCS 154 (168)
Q Consensus 132 ~i~pG~t~svtF~~pG~Y~y~C~ 154 (168)
....+.+.+++|..+|.|.....
T Consensus 37 ~~~~~~~~t~ty~~~G~y~V~lt 59 (69)
T PF00801_consen 37 TVSTGSSVTHTYSSPGTYTVTLT 59 (69)
T ss_dssp EEECSSEEEEEESSSEEEEEEEE
T ss_pred ccccCCCEEEEcCCCeEEEEEEE
Confidence 44577889999999999987654
No 89
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=71.84 E-value=19 Score=33.93 Aligned_cols=38 Identities=16% Similarity=0.130 Sum_probs=29.2
Q ss_pred cccCCCceEEEEe--CCceeEEEEcC--CCCCCCcEEEEEeC
Q 030950 131 LLNGPGETYAVTL--TEKGTYSFYCS--PHQGAGMVGQVTVN 168 (168)
Q Consensus 131 ~~i~pG~t~svtF--~~pG~Y~y~C~--~H~~~GM~G~I~V~ 168 (168)
..+.+|.=..++| |.||.+.++|. .|...||...++|+
T Consensus 493 v~vp~~gW~aIRF~aDNPG~W~lHCH~~~h~~~Gm~~~~~v~ 534 (596)
T PLN00044 493 IQVFPGAWTAILVFLDNAGIWNLRVENLDAWYLGQEVYINVV 534 (596)
T ss_pred EEeCCCCeEEEEEecCCCEEehhhccCchhhcccCcEEEEEe
Confidence 3445665555677 78999999999 88888998888764
No 90
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=71.17 E-value=15 Score=25.32 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=13.7
Q ss_pred ccccCCCceEEEEe----CC--ceeEEE
Q 030950 130 DLLNGPGETYAVTL----TE--KGTYSF 151 (168)
Q Consensus 130 ~~~i~pG~t~svtF----~~--pG~Y~y 151 (168)
+..+.||++.++.+ .. ||.|..
T Consensus 53 ~~~l~pGe~~~~~~~~~~~~~~~G~Y~~ 80 (82)
T PF12690_consen 53 EETLEPGESLTYEETWDLKDLSPGEYTL 80 (82)
T ss_dssp EEEE-TT-EEEEEEEESS----SEEEEE
T ss_pred EEEECCCCEEEEEEEECCCCCCCceEEE
Confidence 35789999887765 23 899975
No 91
>TIGR02811 formate_TAT formate dehydrogenase region TAT target. Members of this uncharacterized protein family are all small, extending 70 or fewer residues from their respective likely start codons. All have the twin-arginine-dependent tranport (TAT) signal sequence at the N-terminus and a conserved 20-residue C-terminal region that includes the motif Y-[HRK]-X-[TS]-X-H-[IV]-X-X-[YF]-Y. The TAT signal sequence suggests a bound cofactor. All members are encoded near genes for subunits of formate dehydrogenase, and may themselves be a subunit or accessory protein.
Probab=69.89 E-value=6.5 Score=26.29 Aligned_cols=20 Identities=35% Similarity=0.353 Sum_probs=15.1
Q ss_pred ccchhHHHHHHHHHHHHHHH
Q 030950 38 VPKLSIKATLKDVGVAVAAT 57 (168)
Q Consensus 38 ~~~~~~~~~l~~~~~~~~~~ 57 (168)
-+.+|||.+||.+|++++++
T Consensus 6 ~~~~sRR~Flk~lg~~aaa~ 25 (66)
T TIGR02811 6 KADPSRRDLLKGLGVGAAAG 25 (66)
T ss_pred cCCccHHHHHHHHHHHHHHH
Confidence 45679999999988755543
No 92
>PF08802 CytB6-F_Fe-S: Cytochrome B6-F complex Fe-S subunit ; InterPro: IPR014909 The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. The cytochrome b6-f complex has 4 large subunits, these are: cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are: PetG, PetL, PetM and PetN. The complex functions as a dimer. This protein corresponds to the alpha helical transmembrane domain of the cytochrome b6-f complex Rieske iron-sulphur subunit. ; GO: 0009496 plastoquinol-plastocyanin reductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process, 0042651 thylakoid membrane; PDB: 1Q90_R 1VF5_D 2E75_D 2E74_D 2E76_D 2D2C_Q 2ZT9_D.
Probab=69.73 E-value=8.6 Score=23.23 Aligned_cols=21 Identities=19% Similarity=0.184 Sum_probs=12.4
Q ss_pred cccchhHHHHHHHHHHHHHHH
Q 030950 37 AVPKLSIKATLKDVGVAVAAT 57 (168)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~~~~ 57 (168)
..|+|+||..|..+...+++.
T Consensus 2 ~VPdm~RR~lmN~ll~Gava~ 22 (39)
T PF08802_consen 2 RVPDMSRRQLMNLLLGGAVAV 22 (39)
T ss_dssp ----HHHHHHHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHHHhhHHH
Confidence 368999999999865544443
No 93
>TIGR03769 P_ac_wall_RPT actinobacterial surface-anchored protein domain. This model describes a repeat domain that one to three times in Actinobacterial proteins, some of which have LPXTG-type sortase recognition motifs for covalent attachment to the Gram-positive cell wall. Where it occurs with duplication in an LPXTG-anchored protein, it tends to be adjacent to the substrate-binding protein of the gene trio of an ABC transporter system, where that substrate-binding protein has a single copy of this same domain. This arrangement suggests a substrate-binding relay system, with the LPXTG protein acting as a substrate receptor.
Probab=67.83 E-value=4.2 Score=24.63 Aligned_cols=14 Identities=29% Similarity=0.494 Sum_probs=10.7
Q ss_pred EEEeCCceeEEEEc
Q 030950 140 AVTLTEKGTYSFYC 153 (168)
Q Consensus 140 svtF~~pG~Y~y~C 153 (168)
.|.|++||+|...-
T Consensus 6 nW~FT~PG~Y~l~~ 19 (41)
T TIGR03769 6 NWVFTKPGTYTLTV 19 (41)
T ss_pred ceeeCCCeEEEEEE
Confidence 57899999997643
No 94
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=66.65 E-value=8.9 Score=35.35 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=23.6
Q ss_pred EeCCceeEEEEcC--CCCCCCcEEEEEeC
Q 030950 142 TLTEKGTYSFYCS--PHQGAGMVGQVTVN 168 (168)
Q Consensus 142 tF~~pG~Y~y~C~--~H~~~GM~G~I~V~ 168 (168)
+.+.||.+.|+|. .|..+||...++|.
T Consensus 504 ~~dNPG~W~~HCHi~~H~~~Gm~~~~~~~ 532 (538)
T TIGR03390 504 RVTNPGVWMMHCHILQHMVMGMQTVWVFG 532 (538)
T ss_pred EcCCCeeEEEeccchhhhhccceEEEEeC
Confidence 4478999999999 99999999988874
No 95
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=66.00 E-value=11 Score=23.66 Aligned_cols=33 Identities=30% Similarity=0.505 Sum_probs=21.8
Q ss_pred eEEEcCCCEEEE----EeCCC-CCeeEEEccCCCCCCcc
Q 030950 87 SFSVSSGEKIVF----KNNAG-FPHNVVFDEDEIPSGVD 120 (168)
Q Consensus 87 ~itV~~GdtV~f----~N~d~-~~Hnv~~~~~~~P~g~~ 120 (168)
.-++.+||+|++ +|.+. ..+++.+.+ .+|.|..
T Consensus 5 ~~~~~~Gd~v~Yti~v~N~g~~~a~~v~v~D-~lP~g~~ 42 (53)
T TIGR01451 5 KTVATIGDTITYTITVTNNGNVPATNVVVTD-ILPSGTT 42 (53)
T ss_pred ccccCCCCEEEEEEEEEECCCCceEeEEEEE-cCCCCCE
Confidence 456789997654 78875 445666654 4677754
No 96
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=65.30 E-value=42 Score=23.81 Aligned_cols=30 Identities=27% Similarity=0.555 Sum_probs=23.0
Q ss_pred cccCCCceEEEEeCC--ceeEEEEcCCCCCCCc
Q 030950 131 LLNGPGETYAVTLTE--KGTYSFYCSPHQGAGM 161 (168)
Q Consensus 131 ~~i~pG~t~svtF~~--pG~Y~y~C~~H~~~GM 161 (168)
..+.||+.+++.|.. .|+=.|+|.... .++
T Consensus 29 ~~l~~g~~~~~~F~~~~~~~t~f~C~~~~-~~~ 60 (110)
T PF05938_consen 29 HVLKPGQSYSFSFRDNFFGTTLFWCHFRW-PGG 60 (110)
T ss_pred EECCCCCEEEEEEecCcCCceeEEEEEEE-CCc
Confidence 367899999999964 388899999555 255
No 97
>KOG4767 consensus Cytochrome c oxidase, subunit II, and related proteins [Energy production and conversion]
Probab=65.14 E-value=27 Score=28.62 Aligned_cols=64 Identities=20% Similarity=0.252 Sum_probs=38.8
Q ss_pred CeEEEcCCCEEEEEe-CCCCCeeEEEccCCCCCCccccccccccCccccCCCc--eEEEEeCCceeEEEEcC-----CCC
Q 030950 86 SSFSVSSGEKIVFKN-NAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGE--TYAVTLTEKGTYSFYCS-----PHQ 157 (168)
Q Consensus 86 ~~itV~~GdtV~f~N-~d~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~--t~svtF~~pG~Y~y~C~-----~H~ 157 (168)
+.+.++....++|.- ..+..|.+..... |+..+. -||. +.++.++++|.|+=.|+ +|.
T Consensus 143 nr~VlP~dt~IR~~vTsaDViHswAvpsl----gvK~Da----------~pGrLnq~s~~i~r~GvfYGqCSEiCGanHs 208 (231)
T KOG4767|consen 143 NRVVLPIDTHIRFIVTSADVIHSWAVPSL----GVKCDA----------IPGRLNQVSFSIQREGVFYGQCSEICGANHS 208 (231)
T ss_pred ceEEEecCCceEEEEEcccceeccccccc----cceecc----------cCceeeeeEEEeccCceEeehhhHhhCCCcc
Confidence 345555666666632 2347888877543 232211 2443 56778899999999999 666
Q ss_pred CCCcEEEE
Q 030950 158 GAGMVGQV 165 (168)
Q Consensus 158 ~~GM~G~I 165 (168)
-|--+|
T Consensus 209 --fmpIv~ 214 (231)
T KOG4767|consen 209 --FMPIVL 214 (231)
T ss_pred --cCcEEE
Confidence 454443
No 98
>PLN02604 oxidoreductase
Probab=63.70 E-value=11 Score=35.10 Aligned_cols=37 Identities=22% Similarity=0.239 Sum_probs=28.6
Q ss_pred cccCCCceEEEEe--CCceeEEEEcC--CCCCCCcEEEEEe
Q 030950 131 LLNGPGETYAVTL--TEKGTYSFYCS--PHQGAGMVGQVTV 167 (168)
Q Consensus 131 ~~i~pG~t~svtF--~~pG~Y~y~C~--~H~~~GM~G~I~V 167 (168)
..+.++.-..++| +.||.+-|+|. .|...||...+..
T Consensus 506 v~vp~~gwvvIRF~aDNPG~WlfHCHI~~Hl~~GM~~v~~e 546 (566)
T PLN02604 506 VPVHPYGWTALRFRADNPGVWAFHCHIESHFFMGMGVVFEE 546 (566)
T ss_pred EEeCCCceEEEEEECCCCeEeeEeecchhHhhcCCEEEEee
Confidence 4555665445666 78999999999 9999999887753
No 99
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=63.47 E-value=26 Score=22.83 Aligned_cols=20 Identities=35% Similarity=0.474 Sum_probs=16.5
Q ss_pred CCceEEEEeCCceeEEEEcC
Q 030950 135 PGETYAVTLTEKGTYSFYCS 154 (168)
Q Consensus 135 pG~t~svtF~~pG~Y~y~C~ 154 (168)
.+++..++|.++|.|.....
T Consensus 43 ~~~~~~~~y~~~G~y~v~l~ 62 (79)
T smart00089 43 TGPTVTHTYTKPGTYTVTLT 62 (79)
T ss_pred CCCCEEEEeCCCcEEEEEEE
Confidence 44677899999999988776
No 100
>PF04442 CtaG_Cox11: Cytochrome c oxidase assembly protein CtaG/Cox11; InterPro: IPR007533 Cytochrome c oxidase assembly protein is essential for the assembly of functional cytochrome oxidase protein. In eukaryotes it is an integral protein of the mitochondrial inner membrane. Cox11 is essential for the insertion of Cu(I) ions to form the CuB site. This is essential for the stability of other structures in subunit I, for example haems a and a3, and the magnesium/manganese centre. Cox11 is probably only required in sub-stoichiometric amounts relative to the structural units []. The C-terminal region of the protein is known to form a dimer. Each monomer coordinates one Cu(I) ion via three conserved cysteine residues (111, 208 and 210) in Saccharomyces cerevisiae (P19516 from SWISSPROT). Met 224 is also thought to play a role in copper transfer or stabilising the copper site [].; GO: 0005507 copper ion binding; PDB: 1SO9_A 1SP0_A.
Probab=62.86 E-value=34 Score=26.63 Aligned_cols=38 Identities=24% Similarity=0.327 Sum_probs=21.6
Q ss_pred cceEEEEEEeecC---CCceEeC--CeEEEcCCCEEEE----EeCCC
Q 030950 66 NAMAIEVLLGGDD---GSLAFVP--SSFSVSSGEKIVF----KNNAG 103 (168)
Q Consensus 66 ~a~t~~V~~~~~~---g~~~F~P--~~itV~~GdtV~f----~N~d~ 103 (168)
..+.++|+..++. -.|.|.| ..+.|++|++..+ +|..+
T Consensus 34 ~~R~i~V~F~a~~~~~lpW~F~P~q~~v~V~pGe~~~~~y~a~N~s~ 80 (152)
T PF04442_consen 34 TSRTITVRFDANVNPGLPWEFKPEQRSVKVHPGETALVFYEATNPSD 80 (152)
T ss_dssp -S-EEEEEEEEEE-TTS-EEEE-S-SEEEEETT--EEEEEEEEE-SS
T ss_pred CCcEEEEEEEeecCCCCceEEEeeeeeEEeCCCCEEEEEEEEECCCC
Confidence 3567788775422 2689999 5889999996533 67664
No 101
>COG3175 COX11 Cytochrome oxidase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=62.36 E-value=45 Score=26.93 Aligned_cols=35 Identities=23% Similarity=0.312 Sum_probs=23.0
Q ss_pred EEEEEEeec---CCCceEeC--CeEEEcCCCEEEE----EeCCC
Q 030950 69 AIEVLLGGD---DGSLAFVP--SSFSVSSGEKIVF----KNNAG 103 (168)
Q Consensus 69 t~~V~~~~~---~g~~~F~P--~~itV~~GdtV~f----~N~d~ 103 (168)
+|.|+-.++ +..|.|.| .++.|++|++... +|..+
T Consensus 63 ~I~V~Fdanv~~~lpW~F~p~q~~v~v~pGet~~~~y~a~N~sd 106 (195)
T COG3175 63 TITVEFDANVANGLPWRFRPVQREVYVRPGETNLIFYEAENLSD 106 (195)
T ss_pred EEEEEEccccCCCCceeeEecCceeEeccCceEEEEEEEecCCC
Confidence 455555432 23689998 6899999997533 56553
No 102
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=61.76 E-value=72 Score=24.58 Aligned_cols=35 Identities=20% Similarity=0.202 Sum_probs=19.3
Q ss_pred eCCeEEEcCCCEEEEEeCCCCCeeE-EEccCCCCCCc
Q 030950 84 VPSSFSVSSGEKIVFKNNAGFPHNV-VFDEDEIPSGV 119 (168)
Q Consensus 84 ~P~~itV~~GdtV~f~N~d~~~Hnv-~~~~~~~P~g~ 119 (168)
.+..|.-..|..++|.-.|. .+.+ +..++.+|+.|
T Consensus 61 ~~gSi~~~~~~~~~F~ltD~-~~~i~V~Y~G~lPd~F 96 (148)
T PRK13254 61 EKGSVQRGDGLTVRFVVTDG-NATVPVVYTGILPDLF 96 (148)
T ss_pred ecCcEEeCCCCEEEEEEEeC-CeEEEEEECCCCCccc
Confidence 35555544556788876664 4444 33444556544
No 103
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=61.63 E-value=12 Score=34.94 Aligned_cols=40 Identities=23% Similarity=0.353 Sum_probs=31.3
Q ss_pred CccccCCCceEEEEe--CCceeEEEEcC--CCCCCCcEEEEEeC
Q 030950 129 EDLLNGPGETYAVTL--TEKGTYSFYCS--PHQGAGMVGQVTVN 168 (168)
Q Consensus 129 ~~~~i~pG~t~svtF--~~pG~Y~y~C~--~H~~~GM~G~I~V~ 168 (168)
+...+.||.=..++| +.||.+.++|. .|...||....+|.
T Consensus 493 ~Tv~V~pggw~aIrf~adNPG~W~~HCHie~H~~~G~~~~f~V~ 536 (563)
T KOG1263|consen 493 DTVQVPPGGWTAIRFVADNPGVWLMHCHIEDHLYLGMETVFIVG 536 (563)
T ss_pred ceEEeCCCCEEEEEEEcCCCcEEEEEEecHHHHhccCeEEEEEe
Confidence 345677876545666 89999999999 88888999888873
No 104
>TIGR01409 TAT_signal_seq Tat (twin-arginine translocation) pathway signal sequence. Members with small amino acid side chains at the -1 and -3 positions from the C-terminus of the model should be predicted to be cleaved as are Sec pathway signal sequences. Members are almost exclusively bacterial, although archaeal sequences are also found. A large fraction of the members of this family may have bound redox-active cofactors.
Probab=57.94 E-value=9.4 Score=21.12 Aligned_cols=19 Identities=37% Similarity=0.279 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 030950 41 LSIKATLKDVGVAVAATAA 59 (168)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~ 59 (168)
++||..||..+...++++.
T Consensus 1 ~sRR~Flk~~~~~~a~~~~ 19 (29)
T TIGR01409 1 LSRRDFLKGAAAAGAAAGL 19 (29)
T ss_pred CchhhhHHHHHHHHHHHhc
Confidence 5789999998776555443
No 105
>PF12988 DUF3872: Domain of unknown function, B. Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L3B_A 2L7Q_A.
Probab=56.70 E-value=10 Score=29.10 Aligned_cols=45 Identities=16% Similarity=0.276 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhhhcccceEEEEEEeecCCCceEe----CCeEEEcCCCEEEE
Q 030950 49 DVGVAVAATAASAMLASNAMAIEVLLGGDDGSLAFV----PSSFSVSSGEKIVF 98 (168)
Q Consensus 49 ~~~~~~~~~~~~~~laa~a~t~~V~~~~~~g~~~F~----P~~itV~~GdtV~f 98 (168)
.+-+.+.++++.++|.+|-...+|.- .+-|+ |-.-+|.+|+||++
T Consensus 4 ~i~~~~~~~~~~~~l~sC~deLDIQQ-----~YpF~v~tmPVpk~I~~GeTvEI 52 (137)
T PF12988_consen 4 KIIIGCCLLLALLLLSSCDDELDIQQ-----AYPFTVETMPVPKKIKKGETVEI 52 (137)
T ss_dssp -------------------TTS-----------SEEEEE----SS--TTEEEEE
T ss_pred HHHHHHHHHHHHHHHhhcCCccceee-----cCCcEEEEeccccccCCCCEEEE
Confidence 33344445555566778866555543 35554 44556789998866
No 106
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=56.57 E-value=69 Score=24.03 Aligned_cols=12 Identities=33% Similarity=0.634 Sum_probs=9.7
Q ss_pred cccCCCceEEEE
Q 030950 131 LLNGPGETYAVT 142 (168)
Q Consensus 131 ~~i~pG~t~svt 142 (168)
.+|.||++|+|+
T Consensus 74 P~L~PGe~F~Y~ 85 (127)
T PRK05461 74 PVLAPGESFEYT 85 (127)
T ss_pred ceECCCCCeEEe
Confidence 478999988875
No 107
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=55.66 E-value=99 Score=24.27 Aligned_cols=44 Identities=23% Similarity=0.302 Sum_probs=23.8
Q ss_pred EEEEEeecCCCceEeCCeEEEcCCC-EEEEEeCCCCCeeE-EEccCCCCCCc
Q 030950 70 IEVLLGGDDGSLAFVPSSFSVSSGE-KIVFKNNAGFPHNV-VFDEDEIPSGV 119 (168)
Q Consensus 70 ~~V~~~~~~g~~~F~P~~itV~~Gd-tV~f~N~d~~~Hnv-~~~~~~~P~g~ 119 (168)
..|.+++ .-.+..|+-..+. +|.|.-.|. .+.+ +...+.+|+-|
T Consensus 58 ~~iRvgG-----~V~~GSi~r~~~~l~v~F~vtD~-~~~v~V~Y~GilPDlF 103 (160)
T PRK13165 58 QRLRVGG-----MVMPGSVQRDPNSLKVSFTLYDA-GGSVTVTYEGILPDLF 103 (160)
T ss_pred CEEEEee-----EEeCCcEEECCCCeEEEEEEEcC-CeEEEEEEcccCCccc
Confidence 4555553 2246666554333 688887774 4444 34455556543
No 108
>PF04314 DUF461: Protein of unknown function (DUF461); InterPro: IPR007410 This entry represents a domain found in of proteins of unknown function, including DR1885 from Deinococcus radiodurans and CC3502 from Caulobacter crescentus (Caulobacter vibrioides), which share a potential metal binding motif H(M)X10MX21HXM. DR1885 was found to bind copper(I) through a histidine and three Mets in a cupredoxin-like fold []. The surface location of the copper-binding site as well as the type of coordination are well poised for metal transfer chemistry, suggesting that DR1885 might transfer copper, taking the role of Cox17 in bacteria (Cox17 being an accessory protein required for correct assembly of eukaryotic cyochrome c oxidase). ; PDB: 2K6W_A 2K6Z_A 2K6Y_A 2K70_A 1X9L_A 2JQA_A.
Probab=51.99 E-value=86 Score=22.44 Aligned_cols=55 Identities=22% Similarity=0.423 Sum_probs=32.0
Q ss_pred CCCceEeC-CeEEEcCCCEEEEEeCCCCCeeEEEccCCCCCCccccccccccCccccCCCceEEE--EeCCceeEEE
Q 030950 78 DGSLAFVP-SSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAV--TLTEKGTYSF 151 (168)
Q Consensus 78 ~g~~~F~P-~~itV~~GdtV~f~N~d~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t~sv--tF~~pG~Y~y 151 (168)
+|-+...| +.|.|++|.++.|...+ .|-...+-. ..+.+|+++.+ +|..-|++.+
T Consensus 52 ~g~~~m~~v~~i~ipa~~~v~l~pgg--~HlmL~g~~-----------------~~l~~G~~v~ltL~f~~gg~v~v 109 (110)
T PF04314_consen 52 DGVMKMRPVDSIPIPAGSTVELKPGG--YHLMLMGLK-----------------RPLKPGDTVPLTLTFEDGGKVTV 109 (110)
T ss_dssp CCEEEECCSS-EEEETT-EEEE-CCC--CEEEEECES-----------------S-B-TTEEEEEEEEETTTEEEEE
T ss_pred CCeEEEEECCCEEECCCCeEEecCCC--EEEEEeCCc-----------------ccCCCCCEEEEEEEECCCCEEEe
Confidence 34455554 58999999999996554 555444311 13568887765 5677787764
No 109
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=51.55 E-value=96 Score=23.07 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=15.5
Q ss_pred eCCeEEEc-CCCEEEEEeCCCCCeeE-EEccCCCCCCc
Q 030950 84 VPSSFSVS-SGEKIVFKNNAGFPHNV-VFDEDEIPSGV 119 (168)
Q Consensus 84 ~P~~itV~-~GdtV~f~N~d~~~Hnv-~~~~~~~P~g~ 119 (168)
.+..+.-. .+..++|.-.|. .+.+ +...+..|+.+
T Consensus 60 ~~gSv~~~~~~~~~~F~i~D~-~~~i~V~Y~G~~Pd~F 96 (131)
T PF03100_consen 60 VEGSVEYDPDGNTLTFTITDG-GKEIPVVYTGPLPDLF 96 (131)
T ss_dssp ECTTEEE-TTSSEEEEEEE-S-S-EEEEEEES--CTT-
T ss_pred ccCCEEEcCCCCEEEEEEEEC-CcEEEEEECCCCCccc
Confidence 34455544 455788876664 3444 33444456544
No 110
>TIGR03786 strep_pil_rpt streptococcal pilin isopeptide linkage domain. This model describes a domain that occurs once in the major pilin of Streptococcus pyogenes, Spy0128, but in higher copy numbers in other streptococcal proteins. The domain occurs nine times in a surface-anchored protein of Bifidobacterium longum. All members of this family have LPXTG-type sortase target sequences. The S. pyogenes major pilin has been shown to undergo isopeptide bond cross-linking, mediated by sortases, that are critical to maintaining pilus structural integrity. One such Lys-to-Asn isopeptide bond is to a near-invariant Asn near the C-terminal end of this domain (column 81 of the seed alignment). A Glu in the S. pyogenes major pilin (column 25 of the seed alignment), invariant as Glu or Gln, is described as catalytic for isopeptide bond formation.
Probab=51.54 E-value=10 Score=25.04 Aligned_cols=15 Identities=33% Similarity=0.680 Sum_probs=12.0
Q ss_pred EEEeCCceeEEEEcC
Q 030950 140 AVTLTEKGTYSFYCS 154 (168)
Q Consensus 140 svtF~~pG~Y~y~C~ 154 (168)
.++|++||+|.|.-.
T Consensus 3 ~i~f~~~G~Y~YtV~ 17 (64)
T TIGR03786 3 PLTFTKVGTYTYTIT 17 (64)
T ss_pred ccEeCCCeEEEEEEE
Confidence 378889999998765
No 111
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=50.14 E-value=53 Score=23.92 Aligned_cols=26 Identities=15% Similarity=0.356 Sum_probs=18.6
Q ss_pred CCceEeCCeEEEcCCC---EEEEEeCCCC
Q 030950 79 GSLAFVPSSFSVSSGE---KIVFKNNAGF 104 (168)
Q Consensus 79 g~~~F~P~~itV~~Gd---tV~f~N~d~~ 104 (168)
|++.+.+..|++.+|- +++.+|.++.
T Consensus 4 Gei~~~~~~I~lN~gr~~~~l~V~NtGDR 32 (101)
T cd00407 4 GEIILKEGDIELNAGREAVTLKVKNTGDR 32 (101)
T ss_pred ceEEeCCCCeEeCCCCCEEEEEEEeCCCc
Confidence 4566677889999985 4556888863
No 112
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=50.10 E-value=1.2e+02 Score=23.72 Aligned_cols=35 Identities=23% Similarity=0.221 Sum_probs=19.5
Q ss_pred eCCeEEEcC-CCEEEEEeCCCCCeeE-EEccCCCCCCc
Q 030950 84 VPSSFSVSS-GEKIVFKNNAGFPHNV-VFDEDEIPSGV 119 (168)
Q Consensus 84 ~P~~itV~~-GdtV~f~N~d~~~Hnv-~~~~~~~P~g~ 119 (168)
.+..|.-.. |.+|.|.-.|. .+.+ +.+.+.+|+-|
T Consensus 67 ~~GSv~r~~~~~~v~F~vtD~-~~~v~V~Y~GilPDlF 103 (159)
T PRK13150 67 MPGSVRRDPDSLKVNFSLYDA-EGSVTVSYEGILPDLF 103 (159)
T ss_pred eCCcEEECCCCcEEEEEEEcC-CcEEEEEEeccCCccc
Confidence 466665543 44788877774 4454 33444555543
No 113
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=49.61 E-value=52 Score=23.93 Aligned_cols=26 Identities=19% Similarity=0.428 Sum_probs=18.4
Q ss_pred CCceEeCCeEEEcCCC---EEEEEeCCCC
Q 030950 79 GSLAFVPSSFSVSSGE---KIVFKNNAGF 104 (168)
Q Consensus 79 g~~~F~P~~itV~~Gd---tV~f~N~d~~ 104 (168)
|++.+.+..|++.+|- ++..+|.++.
T Consensus 4 Gei~~~~~~I~ln~gr~~~~l~V~NtGDR 32 (101)
T TIGR00192 4 GELQLAEGDITINEGRKTVSVKVKNTGDR 32 (101)
T ss_pred ceEecCCCCEEeCCCCcEEEEEEEeCCCc
Confidence 3566677789999985 3456898863
No 114
>PRK13202 ureB urease subunit beta; Reviewed
Probab=49.03 E-value=53 Score=24.02 Aligned_cols=26 Identities=8% Similarity=0.241 Sum_probs=18.8
Q ss_pred CCceEeCCeEEEcCCC--E--EEEEeCCCC
Q 030950 79 GSLAFVPSSFSVSSGE--K--IVFKNNAGF 104 (168)
Q Consensus 79 g~~~F~P~~itV~~Gd--t--V~f~N~d~~ 104 (168)
|++.+.+..|++.+|. + ++.+|.++.
T Consensus 4 Gei~~~~~~I~ln~grr~~~~l~V~NtGDR 33 (104)
T PRK13202 4 GEIFYGSGDIEMNAAALSRLQMRIINAGDR 33 (104)
T ss_pred ceEecCCCCEEeCCCCCceEEEEEEeCCCC
Confidence 4566777889999993 4 455898863
No 115
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=46.74 E-value=1.9e+02 Score=26.23 Aligned_cols=71 Identities=15% Similarity=0.216 Sum_probs=37.2
Q ss_pred eEEEEEEeecCCCceE-eCCeEEEcCCCEEEEEeCCCCCeeEEEccCCCCCCccccccccccCccccCCCceEEEEe
Q 030950 68 MAIEVLLGGDDGSLAF-VPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTL 143 (168)
Q Consensus 68 ~t~~V~~~~~~g~~~F-~P~~itV~~GdtV~f~N~d~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t~svtF 143 (168)
...++.+.-+- +..| .-++=.|+-.=++++.|.+..+|.+.+.-...| +... ........++||+..++.+
T Consensus 324 ~~~~~~v~r~r-~~l~~~~~~g~i~N~Y~~~i~Nk~~~~~~~~l~v~g~~-~~~~---~~~~~~i~v~~g~~~~~~v 395 (434)
T TIGR02745 324 EPMDLNVLRDR-NLLYVRNSDGVVENTYTLKILNKTEQPHEYYLSVLGLP-GIKI---EGPGAPIHVKAGEKVKLPV 395 (434)
T ss_pred CceEEEEEecC-CcceEECCCCcEEEEEEEEEEECCCCCEEEEEEEecCC-CcEE---EcCCceEEECCCCEEEEEE
Confidence 46677775432 2222 111222222226788999888898877543322 2211 1111245788998876543
No 116
>PLN03070 photosystem I reaction center subunit psaK 247; Provisional
Probab=45.86 E-value=15 Score=27.82 Aligned_cols=20 Identities=40% Similarity=0.733 Sum_probs=13.9
Q ss_pred CcceeeeeeeeccccccCcCCC
Q 030950 1 MATVTSAAVTVPTFTGLKAGAT 22 (168)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (168)
||+.-++ ++|+|.||++...
T Consensus 1 ~~~~~~~--~~p~F~glr~~~~ 20 (128)
T PLN03070 1 MASTMMT--TLPQFNGLRASSA 20 (128)
T ss_pred Ccccccc--ccccccccccccc
Confidence 5554443 4899999999543
No 117
>PRK13203 ureB urease subunit beta; Reviewed
Probab=45.26 E-value=63 Score=23.55 Aligned_cols=26 Identities=12% Similarity=0.259 Sum_probs=18.2
Q ss_pred CCceEeCCeEEEcCCC---EEEEEeCCCC
Q 030950 79 GSLAFVPSSFSVSSGE---KIVFKNNAGF 104 (168)
Q Consensus 79 g~~~F~P~~itV~~Gd---tV~f~N~d~~ 104 (168)
|++...+..|++.+|- +++.+|.++.
T Consensus 4 Ge~~~~~~~I~ln~gr~~~~l~V~NtGDR 32 (102)
T PRK13203 4 GEYITADGEIELNAGRETVTLTVANTGDR 32 (102)
T ss_pred ceEecCCCCEEeCCCCCEEEEEEEeCCCC
Confidence 3556667788998885 3556898863
No 118
>PRK13204 ureB urease subunit beta; Reviewed
Probab=45.19 E-value=61 Score=25.39 Aligned_cols=26 Identities=12% Similarity=0.377 Sum_probs=19.3
Q ss_pred CCceEeCCeEEEcCCC---EEEEEeCCCC
Q 030950 79 GSLAFVPSSFSVSSGE---KIVFKNNAGF 104 (168)
Q Consensus 79 g~~~F~P~~itV~~Gd---tV~f~N~d~~ 104 (168)
|++.+.+..|++.+|- +++.+|.++.
T Consensus 27 Gei~~~~~~I~lN~gr~~~~l~V~NtGDR 55 (159)
T PRK13204 27 GGYVLAKDPIEINQGRPRTTLTVRNTGDR 55 (159)
T ss_pred CeEEeCCCCeEeCCCCcEEEEEEEeCCCC
Confidence 4567778889999996 4556898863
No 119
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=43.07 E-value=41 Score=22.07 Aligned_cols=33 Identities=24% Similarity=0.612 Sum_probs=20.5
Q ss_pred CeEEEcCCCEEEE----EeCCCCC-eeEEEccCCCCCCc
Q 030950 86 SSFSVSSGEKIVF----KNNAGFP-HNVVFDEDEIPSGV 119 (168)
Q Consensus 86 ~~itV~~GdtV~f----~N~d~~~-Hnv~~~~~~~P~g~ 119 (168)
+.-.+.+||+|++ +|.+... -|+.+.+ .+|.|.
T Consensus 33 ~~~~~~~Gd~v~ytitvtN~G~~~a~nv~v~D-~lp~g~ 70 (76)
T PF01345_consen 33 NPSTANPGDTVTYTITVTNTGPAPATNVVVTD-TLPAGL 70 (76)
T ss_pred CCCcccCCCEEEEEEEEEECCCCeeEeEEEEE-cCCCCC
Confidence 4556899997654 7887543 3455544 456664
No 120
>PRK13474 cytochrome b6-f complex iron-sulfur subunit; Provisional
Probab=42.29 E-value=38 Score=26.74 Aligned_cols=22 Identities=14% Similarity=0.256 Sum_probs=15.7
Q ss_pred cccccchhHHHHHHHHHHHHHH
Q 030950 35 ASAVPKLSIKATLKDVGVAVAA 56 (168)
Q Consensus 35 ~~~~~~~~~~~~l~~~~~~~~~ 56 (168)
....|+++||.+|+.++.++++
T Consensus 6 ~~~~~d~~RR~FL~~~~~~~gg 27 (178)
T PRK13474 6 SSDVPSMGRRQFMNLLTFGTVT 27 (178)
T ss_pred cCCCCCccHHHHHHHHHHHHHH
Confidence 3457889999999976544444
No 121
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=42.28 E-value=33 Score=22.15 Aligned_cols=24 Identities=13% Similarity=0.477 Sum_probs=15.0
Q ss_pred EcCCCEEEEEeCCCCCeeEEEccC
Q 030950 90 VSSGEKIVFKNNAGFPHNVVFDED 113 (168)
Q Consensus 90 V~~GdtV~f~N~d~~~Hnv~~~~~ 113 (168)
+++||.|+++...+..|+++..++
T Consensus 6 f~~GdrVQlTD~Kgr~~Ti~L~~G 29 (54)
T PF14801_consen 6 FRAGDRVQLTDPKGRKHTITLEPG 29 (54)
T ss_dssp --TT-EEEEEETT--EEEEE--TT
T ss_pred CCCCCEEEEccCCCCeeeEEECCC
Confidence 578999999998888899988764
No 122
>PF12389 Peptidase_M73: Camelysin metallo-endopeptidase; InterPro: IPR022121 Camelysin is a novel surface metallopeptidase from Bacillus cereus []. Camelysin prefers cleavage sites in front of aliphatic and hydrophilic amino acid residues (-OH, -SO3H, amido group), and requires zinc for activity [, ].
Probab=37.98 E-value=1e+02 Score=25.12 Aligned_cols=16 Identities=19% Similarity=0.464 Sum_probs=11.8
Q ss_pred EEEcCCCEE----EEEeCCC
Q 030950 88 FSVSSGEKI----VFKNNAG 103 (168)
Q Consensus 88 itV~~GdtV----~f~N~d~ 103 (168)
-.++|||+| .++|.+.
T Consensus 59 ~nlkPGD~v~k~f~l~N~Gt 78 (199)
T PF12389_consen 59 SNLKPGDTVEKEFTLKNSGT 78 (199)
T ss_pred ccCCCCCeEEEEEEEEeCCe
Confidence 368999976 5578774
No 123
>PRK13205 ureB urease subunit beta; Reviewed
Probab=35.92 E-value=1e+02 Score=24.18 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=18.1
Q ss_pred CCceEeCCeEEEcCCC---EEEEEeCCC
Q 030950 79 GSLAFVPSSFSVSSGE---KIVFKNNAG 103 (168)
Q Consensus 79 g~~~F~P~~itV~~Gd---tV~f~N~d~ 103 (168)
|++.+.+..|++.+|. +++.+|.++
T Consensus 4 Gei~~~~g~IelN~GR~~i~L~V~NtGD 31 (162)
T PRK13205 4 GEYILSSESLTGNVGREAKTIEIINTGD 31 (162)
T ss_pred ceEecCCCCeEeCCCCcEEEEEEEeCCC
Confidence 3566677889999995 345688886
No 124
>cd08759 Type_III_cohesin_like Cohesin domain, interaction partner of dockerin. Bacterial cohesin domains bind to a complementary protein domain named dockerin, and this interaction is required for the formation of the cellulosome, a cellulose-degrading complex. Two specific calcium-dependent interactions between cohesin and dockerin appear to be essential for cellulosome assembly, type I and type II. This subfamily represents type III cohesins and closely related domains.
Probab=34.30 E-value=39 Score=26.51 Aligned_cols=30 Identities=33% Similarity=0.388 Sum_probs=18.1
Q ss_pred CceEeCCeEEEcCCCEEEEEeCCCCCeeEE
Q 030950 80 SLAFVPSSFSVSSGEKIVFKNNAGFPHNVV 109 (168)
Q Consensus 80 ~~~F~P~~itV~~GdtV~f~N~d~~~Hnv~ 109 (168)
.+.+.|+..++++||+|++.-.+..-+++-
T Consensus 2 ~l~l~~~k~~~~aGetvti~vkg~~l~~Vn 31 (160)
T cd08759 2 TLSLVPSKTTVKAGETITIDLYGQGLKNVN 31 (160)
T ss_pred ceEEeccccccCCCCEEEEEEEecccceee
Confidence 455667777777777777654443334443
No 125
>PRK13201 ureB urease subunit beta; Reviewed
Probab=34.19 E-value=1.2e+02 Score=23.25 Aligned_cols=25 Identities=12% Similarity=0.239 Sum_probs=17.5
Q ss_pred CCceEeCCeEEEcCCC---EEEEEeCCC
Q 030950 79 GSLAFVPSSFSVSSGE---KIVFKNNAG 103 (168)
Q Consensus 79 g~~~F~P~~itV~~Gd---tV~f~N~d~ 103 (168)
|++.+.+..|++.+|- ++..+|.++
T Consensus 4 Gei~~~~~~I~lN~gr~~~~l~V~NtGD 31 (136)
T PRK13201 4 GEIITKSTEVEINNHHPETVIEVENTGD 31 (136)
T ss_pred ceEecCCCCeEeCCCCCEEEEEEEeCCC
Confidence 3456667788888885 345588876
No 126
>PLN02289 ribulose-bisphosphate carboxylase small chain
Probab=33.59 E-value=25 Score=27.96 Aligned_cols=11 Identities=64% Similarity=0.939 Sum_probs=8.8
Q ss_pred eccccccCcCC
Q 030950 11 VPTFTGLKAGA 21 (168)
Q Consensus 11 ~~~~~~~~~~~ 21 (168)
+..|+|||+.+
T Consensus 21 vapf~gLKs~~ 31 (176)
T PLN02289 21 VAPFTGLKSSA 31 (176)
T ss_pred ccccccccccc
Confidence 55899999864
No 127
>PRK13198 ureB urease subunit beta; Reviewed
Probab=33.36 E-value=1.2e+02 Score=23.74 Aligned_cols=24 Identities=13% Similarity=0.357 Sum_probs=17.7
Q ss_pred CceEeCCeEEEcCCC---EEEEEeCCC
Q 030950 80 SLAFVPSSFSVSSGE---KIVFKNNAG 103 (168)
Q Consensus 80 ~~~F~P~~itV~~Gd---tV~f~N~d~ 103 (168)
++.+.+..|++.+|- ++..+|.++
T Consensus 33 ei~~~~g~I~lN~gr~~~~l~V~NtGD 59 (158)
T PRK13198 33 GLVLAETPITFNENKPVTKVKVRNTGD 59 (158)
T ss_pred eEEeCCCCeEeCCCCcEEEEEEEeCCC
Confidence 566677889999995 345689886
No 128
>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=32.52 E-value=64 Score=23.64 Aligned_cols=32 Identities=25% Similarity=0.388 Sum_probs=23.2
Q ss_pred cccceEEEEEEeecCCCceEeCCeEEEcCCCEEEEEeCCC
Q 030950 64 ASNAMAIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAG 103 (168)
Q Consensus 64 aa~a~t~~V~~~~~~g~~~F~P~~itV~~GdtV~f~N~d~ 103 (168)
-....++|+.+.+ ++.-.+++||.|.|.+.++
T Consensus 14 ~~G~KtiEiRlnD--------~kr~~ikvGD~I~f~~~~~ 45 (109)
T cd06555 14 KSGKKTIEIRLND--------EKRQQIKVGDKILFNDLDT 45 (109)
T ss_pred HcCCCEEEEEecc--------cchhcCCCCCEEEEEEcCC
Confidence 3456788888774 2346789999999987653
No 129
>PRK13838 conjugal transfer pilin processing protease TraF; Provisional
Probab=32.35 E-value=66 Score=25.33 Aligned_cols=60 Identities=17% Similarity=0.112 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcccceEEEEEEeecC--CCceEeCCeEEEcCCCEEEEEeC
Q 030950 41 LSIKATLKDVGVAVAATAASAMLASNAMAIEVLLGGDD--GSLAFVPSSFSVSSGEKIVFKNN 101 (168)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~~~~laa~a~t~~V~~~~~~--g~~~F~P~~itV~~GdtV~f~N~ 101 (168)
|.||+.+..+.++++++.+.+.+. ......+....++ +-+...+..-.++.||-|.|...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~N~T~S~pig~y~~~~~~~~~~rGDiVvf~~P 62 (176)
T PRK13838 1 MRRRRALLLLAVAAVAASGLAATA-WIGGYRINLTPSEPLGLWRIEALDRPVAVGDLVFICPP 62 (176)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHH-HHCceEEECCCCCEEEEEEEeccCCCCCCCcEEEEECC
Confidence 345666666654444433322211 2222333333221 12344555567899999999743
No 130
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=32.01 E-value=1.7e+02 Score=21.26 Aligned_cols=27 Identities=15% Similarity=0.416 Sum_probs=16.8
Q ss_pred CCceEeCCeEEEcCCC---EEEEEeCCCCC
Q 030950 79 GSLAFVPSSFSVSSGE---KIVFKNNAGFP 105 (168)
Q Consensus 79 g~~~F~P~~itV~~Gd---tV~f~N~d~~~ 105 (168)
|++.+.+..|++.+|- +++.+|.++.+
T Consensus 3 Gei~~~~~~I~lN~gr~~~~l~V~N~GDRP 32 (100)
T PF00699_consen 3 GEIILADGDIELNAGRERITLEVTNTGDRP 32 (100)
T ss_dssp T-EE--SSEEETTTTSEEEEEEEEE-SSS-
T ss_pred CeEEeCCCcEEecCCCcEEEEEEEeCCCcc
Confidence 4667778899999997 35668988644
No 131
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones]
Probab=31.87 E-value=2.2e+02 Score=28.65 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=17.0
Q ss_pred ccCCCceEEEEeCCceeEEEEcC
Q 030950 132 LNGPGETYAVTLTEKGTYSFYCS 154 (168)
Q Consensus 132 ~i~pG~t~svtF~~pG~Y~y~C~ 154 (168)
.-++|..|.++---||.|+..-+
T Consensus 151 ~T~~~Gky~f~~iiPG~Yev~as 173 (1165)
T KOG1948|consen 151 KTEDGGKYEFRNIIPGKYEVSAS 173 (1165)
T ss_pred EecCCCeEEEEecCCCceEEecc
Confidence 34677777777678999998765
No 132
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=30.27 E-value=1.7e+02 Score=22.22 Aligned_cols=31 Identities=29% Similarity=0.397 Sum_probs=16.0
Q ss_pred CceEEEEeC-CceeEEEEcC--CCCCCCcEEEEEe
Q 030950 136 GETYAVTLT-EKGTYSFYCS--PHQGAGMVGQVTV 167 (168)
Q Consensus 136 G~t~svtF~-~pG~Y~y~C~--~H~~~GM~G~I~V 167 (168)
|+.-.|.|+ +||.|..+.. +.+. --.|.|+|
T Consensus 44 ~~~G~Ys~~~epG~Y~V~l~~~g~~~-~~vG~I~V 77 (134)
T PF08400_consen 44 GEAGEYSFDVEPGVYRVTLKVEGRPP-VYVGDITV 77 (134)
T ss_pred CCCceEEEEecCCeEEEEEEECCCCc-eeEEEEEE
Confidence 334445553 6777754433 3332 23477766
No 133
>PF13617 Lipoprotein_19: YnbE-like lipoprotein
Probab=30.07 E-value=1.1e+02 Score=20.12 Aligned_cols=19 Identities=16% Similarity=0.065 Sum_probs=12.0
Q ss_pred HHHHHhhhcccceEEEEEE
Q 030950 56 ATAASAMLASNAMAIEVLL 74 (168)
Q Consensus 56 ~~~~~~~laa~a~t~~V~~ 74 (168)
++++++++++|..+++|..
T Consensus 6 ~~~~~~~l~gCtPtV~v~a 24 (59)
T PF13617_consen 6 LLALALALTGCTPTVKVEA 24 (59)
T ss_pred HHHHHHHHccCCCeEEeec
Confidence 3444556788876666664
No 134
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=28.28 E-value=2.9e+02 Score=21.56 Aligned_cols=35 Identities=11% Similarity=0.027 Sum_probs=18.6
Q ss_pred eCCeEEEcCCC-EEEEEeCCCCCeeEE-EccCCCCCCc
Q 030950 84 VPSSFSVSSGE-KIVFKNNAGFPHNVV-FDEDEIPSGV 119 (168)
Q Consensus 84 ~P~~itV~~Gd-tV~f~N~d~~~Hnv~-~~~~~~P~g~ 119 (168)
.|..|+=..+. +|+|.-.|. .+.+. .+.+.+|+-|
T Consensus 61 ~~GSv~r~~~~~~v~F~vtD~-~~~v~V~Y~GilPDlF 97 (155)
T PRK13159 61 KAGSIQRAADSLKVSFTVIDK-NAATQVEYTGILPDLF 97 (155)
T ss_pred ecCcEEEcCCCcEEEEEEEcC-CcEEEEEEccCCCccc
Confidence 45555433222 688877774 45553 3455556544
No 135
>COG2822 Predicted periplasmic lipoprotein involved in iron transport [Inorganic ion transport and metabolism]
Probab=27.57 E-value=8.6 Score=33.51 Aligned_cols=77 Identities=19% Similarity=0.284 Sum_probs=45.9
Q ss_pred cccceEEEEEEeecCCCceEeCCeEEEcCCCEEEE-EeCCCCCeeEEEccCCCCCCccccccccccCccccCCCceEEEE
Q 030950 64 ASNAMAIEVLLGGDDGSLAFVPSSFSVSSGEKIVF-KNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVT 142 (168)
Q Consensus 64 aa~a~t~~V~~~~~~g~~~F~P~~itV~~GdtV~f-~N~d~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t~svt 142 (168)
++....+.+++. .+.-+|-.++|+.|++..+ +|.....-.|.+.++ +.... .-..+.||-+...|
T Consensus 27 a~~~~~Vk~~Vn----d~~~e~m~~tV~~g~~~~i~~n~s~~~~~W~~~k~-----v~V~~-----e~~~~~~~~~k~~t 92 (376)
T COG2822 27 AADVPQVKITVN----DKQCEPMTLTVPAGKTQFIIKNHSQKALEWEILKG-----VMVVD-----ERENIAPGFSKKMT 92 (376)
T ss_pred hccccceeeeec----hhccCHHhhcccccchhhHhhcchhhhhHHHHHcC-----cchhc-----cccccccchHhhhc
Confidence 344567777777 3679999999999998765 555543333333222 11100 00134566544444
Q ss_pred e-CCceeEEEEcC
Q 030950 143 L-TEKGTYSFYCS 154 (168)
Q Consensus 143 F-~~pG~Y~y~C~ 154 (168)
. -.||.|.--|.
T Consensus 93 ~~l~~~~~d~~cg 105 (376)
T COG2822 93 ANLQPGEYDMTCG 105 (376)
T ss_pred ccccccccccccc
Confidence 4 37899999998
No 136
>PRK11901 hypothetical protein; Reviewed
Probab=27.29 E-value=1.2e+02 Score=26.62 Aligned_cols=40 Identities=30% Similarity=0.335 Sum_probs=22.8
Q ss_pred cCcCCCCccccccccccccccccch--hHHHHHHHHHHHHHHHHH
Q 030950 17 LKAGATPARVVGSTMKASASAVPKL--SIKATLKDVGVAVAATAA 59 (168)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ 59 (168)
||++.+-..+.-++ +. ...|++ ||.-+|-.+|+++++++.
T Consensus 10 lkPDtSDRrp~Rsr-~~--~~~pk~~vSRQh~MiGiGilVLlLLI 51 (327)
T PRK11901 10 LKPDTSDRRPTRSR-KS--SNGPKLAVSRQHMMIGIGILVLLLLI 51 (327)
T ss_pred cCCCcccCCCcccc-cC--CCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 67766544433333 22 233555 566688888887766443
No 137
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=27.11 E-value=1.3e+02 Score=21.50 Aligned_cols=45 Identities=18% Similarity=0.346 Sum_probs=23.4
Q ss_pred EEEEEeCCCCCeeEEEccCCCCCCccccccccccCccccCCCceEEEEe
Q 030950 95 KIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTL 143 (168)
Q Consensus 95 tV~f~N~d~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t~svtF 143 (168)
++++.|....+|.+.+.-.. ++++.... ......+.+|++.++.|
T Consensus 36 ~lkl~Nkt~~~~~~~i~~~g-~~~~~l~~---~~~~i~v~~g~~~~~~v 80 (118)
T PF11614_consen 36 TLKLTNKTNQPRTYTISVEG-LPGAELQG---PENTITVPPGETREVPV 80 (118)
T ss_dssp EEEEEE-SSS-EEEEEEEES--SS-EE-E---S--EEEE-TT-EEEEEE
T ss_pred EEEEEECCCCCEEEEEEEec-CCCeEEEC---CCcceEECCCCEEEEEE
Confidence 67889999888888765432 22443311 23446778888877654
No 138
>PF14310 Fn3-like: Fibronectin type III-like domain; PDB: 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A.
Probab=27.09 E-value=73 Score=20.79 Aligned_cols=12 Identities=33% Similarity=0.559 Sum_probs=6.5
Q ss_pred ccCCCceEEEEe
Q 030950 132 LNGPGETYAVTL 143 (168)
Q Consensus 132 ~i~pG~t~svtF 143 (168)
.+.||++.+++|
T Consensus 28 ~l~pGes~~v~~ 39 (71)
T PF14310_consen 28 SLAPGESKTVSF 39 (71)
T ss_dssp EE-TT-EEEEEE
T ss_pred EECCCCEEEEEE
Confidence 466777776665
No 139
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=26.78 E-value=82 Score=20.96 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=15.5
Q ss_pred ccCCCceEEEEe----CCceeEEEEcC
Q 030950 132 LNGPGETYAVTL----TEKGTYSFYCS 154 (168)
Q Consensus 132 ~i~pG~t~svtF----~~pG~Y~y~C~ 154 (168)
.+.+|++.+++| .++|.|.+...
T Consensus 56 ~L~~g~~~~v~~~~~~~~~G~~~i~~~ 82 (101)
T PF07705_consen 56 SLAPGESETVTFTWTPPSPGSYTIRVV 82 (101)
T ss_dssp EB-TTEEEEEEEEEE-SS-CEEEEEEE
T ss_pred CcCCCcEEEEEEEEEeCCCCeEEEEEE
Confidence 568998877665 47899987654
No 140
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=25.68 E-value=1.5e+02 Score=24.37 Aligned_cols=22 Identities=9% Similarity=0.104 Sum_probs=14.0
Q ss_pred EeCCeEEEcCCC---EEEEEeCCCC
Q 030950 83 FVPSSFSVSSGE---KIVFKNNAGF 104 (168)
Q Consensus 83 F~P~~itV~~Gd---tV~f~N~d~~ 104 (168)
..+..|++.+|- +++.+|.++.
T Consensus 117 ~~~~~I~lN~gr~~~~l~V~NtGDR 141 (208)
T PRK13192 117 PGDGEIELNAGRPAVTLDVTNTGDR 141 (208)
T ss_pred cCCCCeeeCCCCCEEEEEEEeCCCC
Confidence 344667777774 3455888863
No 141
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex). This enzymex is an oligomeric membrane protein complex that is a component of respiratory and photosynthetic electron transfer chains. It couples the transfer of electrons from ubiquinol to cytochrome c with the generation of a protein gradient across the membrane []. This entry is associated with IPR017941 from INTERPRO, IPR004192 from INTERPRO and IPR015248 from INTERPRO. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1ZRT_R 2QJY_R 2FYN_L 2QJK_O 2QJP_I 2YIU_F.
Probab=25.35 E-value=1.3e+02 Score=18.15 Aligned_cols=20 Identities=20% Similarity=0.018 Sum_probs=9.5
Q ss_pred cccchhHHHHHHHHHHHHHH
Q 030950 37 AVPKLSIKATLKDVGVAVAA 56 (168)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~~~ 56 (168)
.....+||++|.....++++
T Consensus 5 ~~~~~~RRdFL~~at~~~ga 24 (41)
T PF10399_consen 5 EPVDPTRRDFLTIATSAVGA 24 (41)
T ss_dssp -----HHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHHH
Confidence 34567899988654443433
No 142
>PRK13986 urease subunit alpha; Provisional
Probab=24.83 E-value=1.5e+02 Score=24.64 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=15.2
Q ss_pred ceEeCCeEEEcCCC---EEEEEeCCC
Q 030950 81 LAFVPSSFSVSSGE---KIVFKNNAG 103 (168)
Q Consensus 81 ~~F~P~~itV~~Gd---tV~f~N~d~ 103 (168)
+.+.+..|++.+|- +++.+|.++
T Consensus 111 ~~~~~~~I~lN~gr~~~~l~V~NtGD 136 (225)
T PRK13986 111 LFLKDEDITINAGKKAVSVKVKNVGD 136 (225)
T ss_pred EecCCCCeecCCCCcEEEEEEEeCCC
Confidence 34555677788775 345689886
No 143
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=24.56 E-value=2.3e+02 Score=19.16 Aligned_cols=50 Identities=14% Similarity=0.201 Sum_probs=29.5
Q ss_pred EEEEEeCCCCCeeEEEccCCCCCCccccccccccCccccCCCceEEEEeC---CceeEEEE
Q 030950 95 KIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLT---EKGTYSFY 152 (168)
Q Consensus 95 tV~f~N~d~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t~svtF~---~pG~Y~y~ 152 (168)
.++|.|.+...-.+.+.+.....+. .....+.+|++.++.++ .-|-|.|.
T Consensus 23 ~l~l~N~g~~~~~~~v~~~~y~~~~--------~~~~~v~ag~~~~~~w~l~~s~gwYDl~ 75 (89)
T PF05506_consen 23 RLTLSNPGSAAVTFTVYDNAYGGGG--------PWTYTVAAGQTVSLTWPLAASGGWYDLT 75 (89)
T ss_pred EEEEEeCCCCcEEEEEEeCCcCCCC--------CEEEEECCCCEEEEEEeecCCCCcEEEE
Confidence 4677898877777777652111000 11246788988877763 34666553
No 144
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=24.34 E-value=47 Score=19.82 Aligned_cols=25 Identities=16% Similarity=0.126 Sum_probs=17.4
Q ss_pred CCeEEEcCCCEEEEEeCCCCCeeEEE
Q 030950 85 PSSFSVSSGEKIVFKNNAGFPHNVVF 110 (168)
Q Consensus 85 P~~itV~~GdtV~f~N~d~~~Hnv~~ 110 (168)
+++|.++.||.|.+.+.... +.+..
T Consensus 11 ~~eLs~~~Gd~i~v~~~~~~-~Ww~~ 35 (48)
T PF00018_consen 11 PDELSFKKGDIIEVLEKSDD-GWWKV 35 (48)
T ss_dssp TTBSEB-TTEEEEEEEESSS-SEEEE
T ss_pred CCEEeEECCCEEEEEEecCC-CEEEE
Confidence 68999999999998775532 44443
No 145
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=24.33 E-value=44 Score=20.62 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=12.0
Q ss_pred eCCeEEEcCCCEEEEE
Q 030950 84 VPSSFSVSSGEKIVFK 99 (168)
Q Consensus 84 ~P~~itV~~GdtV~f~ 99 (168)
.|+.|++++||.|...
T Consensus 12 ~~~~Ls~~~Gd~i~v~ 27 (55)
T PF07653_consen 12 DPDELSFKKGDVIEVL 27 (55)
T ss_dssp STTB-EB-TTEEEEEE
T ss_pred CCCceEEecCCEEEEE
Confidence 4789999999999876
No 146
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=23.32 E-value=2.6e+02 Score=19.55 Aligned_cols=12 Identities=33% Similarity=0.634 Sum_probs=7.6
Q ss_pred cccCCCceEEEE
Q 030950 131 LLNGPGETYAVT 142 (168)
Q Consensus 131 ~~i~pG~t~svt 142 (168)
.++.||++|+++
T Consensus 57 P~L~pGe~f~Y~ 68 (90)
T PF04379_consen 57 PVLAPGESFEYT 68 (90)
T ss_dssp -EE-TTEEEEEE
T ss_pred ceECCCCcEEEc
Confidence 478899987763
No 147
>COG0782 Uncharacterized conserved protein, YhbC family [Function unknown]
Probab=23.16 E-value=3.5e+02 Score=20.68 Aligned_cols=24 Identities=17% Similarity=0.164 Sum_probs=18.5
Q ss_pred EEcCCCEEEEEeCC-CCCeeEEEcc
Q 030950 89 SVSSGEKIVFKNNA-GFPHNVVFDE 112 (168)
Q Consensus 89 tV~~GdtV~f~N~d-~~~Hnv~~~~ 112 (168)
.|.-|.+|+|.|.+ +..+.+.++.
T Consensus 78 ~V~~Gs~V~~~~~~~ge~~~~~iVg 102 (151)
T COG0782 78 VVTFGSTVTLENLDDGEEVTYTIVG 102 (151)
T ss_pred EEecCCEEEEEECCCCCEEEEEEEc
Confidence 79999999999888 5555555543
No 148
>PF09394 Inhibitor_I42: Chagasin family peptidase inhibitor I42; InterPro: IPR018990 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Chagasin reversible inhibitor of papain-like cysteine proteases []. Chagasin has a beta-barrel structure, which is a unique variant of the immunoglobulin fold with homology to human CD8alpha [, ].; PDB: 2NQD_A 2NNR_A 2H7W_B 3E1Z_A 3CBK_B 3CBJ_B 2OUL_B 2FO8_A 2WGN_B 2C34_A ....
Probab=22.84 E-value=2.4e+02 Score=18.80 Aligned_cols=64 Identities=19% Similarity=0.240 Sum_probs=28.7
Q ss_pred EEEcCCCEEEE--EeCCCCCeeEEEccCCCCCCccc---cccccccCccccCCCceEEEEe--CCceeEEEEc
Q 030950 88 FSVSSGEKIVF--KNNAGFPHNVVFDEDEIPSGVDV---SKISMSTEDLLNGPGETYAVTL--TEKGTYSFYC 153 (168)
Q Consensus 88 itV~~GdtV~f--~N~d~~~Hnv~~~~~~~P~g~~~---~~~~~~~~~~~i~pG~t~svtF--~~pG~Y~y~C 153 (168)
|++++||++.+ .-+......+..... +++... .......++..+..+....|+| .++|+..+..
T Consensus 1 I~v~~g~~~~I~L~~npstGY~W~~~~~--~~~l~l~~~~~~~~~~~~~~vG~~g~~~f~f~a~~~G~~~i~~ 71 (92)
T PF09394_consen 1 ITVKVGDTFEIELPENPSTGYSWSLSSD--SDGLQLVSEEYIPDNSPSGLVGAPGTRTFTFKALKPGTTTIKF 71 (92)
T ss_dssp -EEETTSEEEEEEEEBCCGTBEEEECTS--TTTEEEEEEEEEESSTSSTSSTSSEEEEEEEEESSSEEEEEEE
T ss_pred CeecCCCEEEEEECCCCCCCeEEEEecC--CCeEEEcCCcEEeCCCCcCCCCCCcEEEEEEEEecCeeEEEEE
Confidence 57788886544 333334555554431 122211 0000001112334444555666 6889775533
No 149
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=22.81 E-value=61 Score=18.90 Aligned_cols=19 Identities=21% Similarity=0.385 Sum_probs=15.3
Q ss_pred eCCeEEEcCCCEEEEEeCC
Q 030950 84 VPSSFSVSSGEKIVFKNNA 102 (168)
Q Consensus 84 ~P~~itV~~GdtV~f~N~d 102 (168)
.++.|.+++||.|.+...+
T Consensus 15 ~~~~l~~~~Gd~v~v~~~~ 33 (58)
T smart00326 15 DPDELSFKKGDIITVLEKS 33 (58)
T ss_pred CCCCCCCCCCCEEEEEEcC
Confidence 3588999999999886654
No 150
>PRK05015 aminopeptidase B; Provisional
Probab=22.52 E-value=2.5e+02 Score=25.55 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=20.5
Q ss_pred CCceEeCCe-EEEcCCCEEEEEeCCC
Q 030950 79 GSLAFVPSS-FSVSSGEKIVFKNNAG 103 (168)
Q Consensus 79 g~~~F~P~~-itV~~GdtV~f~N~d~ 103 (168)
++..|.|.+ |+-.-|.||++.|+|.
T Consensus 249 sg~A~kpgDVIt~~nGkTVEI~NTDA 274 (424)
T PRK05015 249 SGNAFKLGDIITYRNGKTVEVMNTDA 274 (424)
T ss_pred CCCCCCCCCEEEecCCcEEeeeccCc
Confidence 367899954 5789999999999984
No 151
>COG4991 Uncharacterized protein with a bacterial SH3 domain homologue [Function unknown]
Probab=22.29 E-value=1.4e+02 Score=23.41 Aligned_cols=59 Identities=19% Similarity=0.228 Sum_probs=33.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhhcc--cceEEEEEEeecCCCceEeCCeEEEcCCCEEEEE
Q 030950 39 PKLSIKATLKDVGVAVAATAASAMLAS--NAMAIEVLLGGDDGSLAFVPSSFSVSSGEKIVFK 99 (168)
Q Consensus 39 ~~~~~~~~l~~~~~~~~~~~~~~~laa--~a~t~~V~~~~~~g~~~F~P~~itV~~GdtV~f~ 99 (168)
-+++++..|+..+..+++.+..+.-++ ...+..|.|.. |.-.--|..-.|+.|..+.+.
T Consensus 7 ~~~~~~~~~~A~a~~~~l~~~~~a~aa~~a~~~a~vN~Rs--GPgT~Yp~vg~Ip~G~~~~i~ 67 (155)
T COG4991 7 KRLSMKTLMRASAFGLALLMPAAAYAAVSASATANVNVRS--GPGTAYPAVGVIPSGSAATIY 67 (155)
T ss_pred HHHhHHHHHHHHHHHHHHHhHHHHHHHHhhhcccCceeec--CCCCCCceeeEecCCceecch
Confidence 456667666665544444333333232 22355666653 233445667788999988763
No 152
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=22.28 E-value=58 Score=19.85 Aligned_cols=17 Identities=24% Similarity=0.474 Sum_probs=11.9
Q ss_pred CCeEEEcCCCEEEEEeC
Q 030950 85 PSSFSVSSGEKIVFKNN 101 (168)
Q Consensus 85 P~~itV~~GdtV~f~N~ 101 (168)
+++|.+++||.|.....
T Consensus 10 ~dELs~~~Gd~i~v~~~ 26 (49)
T PF14604_consen 10 PDELSFKKGDVITVLEK 26 (49)
T ss_dssp TTB-EB-TTEEEEEEEE
T ss_pred cCEeeEcCCCEEEEEEe
Confidence 57899999999987543
No 153
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=22.03 E-value=1.6e+02 Score=19.39 Aligned_cols=9 Identities=11% Similarity=0.143 Sum_probs=3.1
Q ss_pred EcCCCEEEE
Q 030950 90 VSSGEKIVF 98 (168)
Q Consensus 90 V~~GdtV~f 98 (168)
+++|.+.+|
T Consensus 56 ~p~G~~~~w 64 (74)
T PF05899_consen 56 LPKGWTGTW 64 (74)
T ss_dssp E-TTEEEEE
T ss_pred ECCCCEEEE
Confidence 333333333
No 154
>cd03171 SORL_Dfx_classI Superoxide reductase-like (SORL) domain, class I; SORL-domains are present in a family of mononuclear non-heme iron proteins that includes superoxide reductase and desulfoferrodoxin. Superoxide reductase-like proteins scavenge superoxide anion radicals as a defense mechanism against reactive oxygen species and are found in anaerobic bacteria and archeae, and microaerophilic Treponema pallidum. Desulfoferrodoxin (class I) is a homodimeric protein, with each protomer comprised of two domains, the N-terminal desulforedoxin (DSRD) domain and C-terminal SORL domain. Each domain has a distinct iron center: the DSRD iron center I, Fe(S-Cys)4; and the SORL iron center II, Fe[His4Cys(Glu)].
Probab=21.80 E-value=2.5e+02 Score=19.13 Aligned_cols=59 Identities=19% Similarity=0.182 Sum_probs=29.2
Q ss_pred eEEEcCCCEEEEEeCCCCCeeEEEccCCCCCCccccccccccCccccCCCceEEEEeC---CceeEEEEcCCCC
Q 030950 87 SFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLT---EKGTYSFYCSPHQ 157 (168)
Q Consensus 87 ~itV~~GdtV~f~N~d~~~Hnv~~~~~~~P~g~~~~~~~~~~~~~~i~pG~t~svtF~---~pG~Y~y~C~~H~ 157 (168)
.++|++|+ ....-...|.+....-..-++... ..+.|++.-..+|. ..+.-.-||+.|-
T Consensus 14 ~v~V~VG~---v~HPM~~eH~I~wI~l~~~~~~~~---------~~l~P~~~p~a~F~~~~~~~~a~~yCNlHG 75 (78)
T cd03171 14 GIKVKVGS---VAHPMEEKHYIEWIELLADGKVYR---------KHLKPGDAPEAEFSVDADVVTARAYCNLHG 75 (78)
T ss_pred EEEEEECc---ccCCCCCCeEEEEEEEEeCCcEEE---------EEeCCCCccEEEEEEeCCCEEEEEEecccc
Confidence 56677663 222222578776554210111111 13345554455553 3456677999884
No 155
>PRK06764 hypothetical protein; Provisional
Probab=21.76 E-value=1.4e+02 Score=21.24 Aligned_cols=17 Identities=18% Similarity=0.571 Sum_probs=14.0
Q ss_pred eEEEEeCCceeEEEEcC
Q 030950 138 TYAVTLTEKGTYSFYCS 154 (168)
Q Consensus 138 t~svtF~~pG~Y~y~C~ 154 (168)
.|++.|.+||.|.....
T Consensus 75 kyti~f~kpg~yvirvn 91 (105)
T PRK06764 75 KYTIRFSKPGKYVIRVN 91 (105)
T ss_pred eeEEEecCCccEEEEEc
Confidence 58899999999987654
No 156
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=20.97 E-value=2.6e+02 Score=19.15 Aligned_cols=12 Identities=17% Similarity=0.470 Sum_probs=6.7
Q ss_pred EEcCCCEEEEEe
Q 030950 89 SVSSGEKIVFKN 100 (168)
Q Consensus 89 tV~~GdtV~f~N 100 (168)
.++|||++.|.-
T Consensus 42 ~L~pGq~l~f~~ 53 (85)
T PF04225_consen 42 RLKPGQTLEFQL 53 (85)
T ss_dssp G--TT-EEEEEE
T ss_pred hCCCCCEEEEEE
Confidence 478899888843
No 157
>PRK09838 periplasmic copper-binding protein; Provisional
Probab=20.95 E-value=2.1e+02 Score=21.01 Aligned_cols=18 Identities=11% Similarity=0.086 Sum_probs=12.6
Q ss_pred ccCCCceEEEEeCC-ceeE
Q 030950 132 LNGPGETYAVTLTE-KGTY 149 (168)
Q Consensus 132 ~i~pG~t~svtF~~-pG~Y 149 (168)
.+.+|+...++|.. .+.|
T Consensus 88 ~lk~G~~V~F~~~~~~~~~ 106 (115)
T PRK09838 88 EIKTGDKVAFNFVQQGNLS 106 (115)
T ss_pred cCCCCCEEEEEEEEcCCcE
Confidence 46899988888864 3444
No 158
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=20.66 E-value=4.7e+02 Score=21.24 Aligned_cols=13 Identities=23% Similarity=0.368 Sum_probs=9.0
Q ss_pred cccCCCceEEEEe
Q 030950 131 LLNGPGETYAVTL 143 (168)
Q Consensus 131 ~~i~pG~t~svtF 143 (168)
..++||+...+++
T Consensus 78 ~rl~pg~~q~vRi 90 (230)
T PRK09918 78 ARVEPGQSQQVRF 90 (230)
T ss_pred EEECCCCceEEEE
Confidence 4567888777654
No 159
>cd00433 Peptidase_M17 Cytosol aminopeptidase family, N-terminal and catalytic domains. Family M17 contains zinc- and manganese-dependent exopeptidases ( EC 3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and play a key role in protein degradation and in the metabolism of biologically active peptides. They do not contain HEXXH motif (which is used as one of the signature patterns to group the peptidase families) in the metal-binding site. The two associated zinc ions and the active site are entirely enclosed within the C-terminal catalytic domain in leucine aminopeptidase. The enzyme is a hexamer, with the catalytic domains clustered around the three-fold axis, and the two trimers related to one another by a two-fold rotation. The N-terminal domain is structurally similar to the ADP-ribose binding Macro domain. This family includes proteins from bacteria, archaea, animals and plants.
Probab=20.53 E-value=3.4e+02 Score=24.80 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=20.9
Q ss_pred CCceEeCCe-EEEcCCCEEEEEeCCC
Q 030950 79 GSLAFVPSS-FSVSSGEKIVFKNNAG 103 (168)
Q Consensus 79 g~~~F~P~~-itV~~GdtV~f~N~d~ 103 (168)
++..|.|.+ |+-.-|.||++.|+|.
T Consensus 298 s~~A~rPgDVi~s~~GkTVEI~NTDA 323 (468)
T cd00433 298 SGNAYRPGDVITSRSGKTVEILNTDA 323 (468)
T ss_pred CCCCCCCCCEeEeCCCcEEEEecCCc
Confidence 467899955 5789999999999994
No 160
>PF06051 DUF928: Domain of Unknown Function (DUF928); InterPro: IPR010328 This is a family of uncharacterised bacterial proteins.
Probab=20.50 E-value=4.4e+02 Score=20.84 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=16.0
Q ss_pred ccCccccCCCceEEEEeCCceeEEEEcC
Q 030950 127 STEDLLNGPGETYAVTLTEKGTYSFYCS 154 (168)
Q Consensus 127 ~~~~~~i~pG~t~svtF~~pG~Y~y~C~ 154 (168)
+.+...+.+|++|.|.|. .+|.
T Consensus 81 P~~~~~Le~gk~Y~W~~~------l~Cd 102 (189)
T PF06051_consen 81 PEDQPPLEVGKTYRWYFS------LICD 102 (189)
T ss_pred CCCCCCCCCCCeEEEEEE------EEEC
Confidence 333446789999999885 6785
No 161
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=20.36 E-value=94 Score=33.17 Aligned_cols=20 Identities=20% Similarity=0.697 Sum_probs=15.8
Q ss_pred EeCCeEEEcCCCEEEEEeCC
Q 030950 83 FVPSSFSVSSGEKIVFKNNA 102 (168)
Q Consensus 83 F~P~~itV~~GdtV~f~N~d 102 (168)
|.+..++|.+||+|+|+.+|
T Consensus 1328 y~~~~~ela~GDrIr~TrnD 1347 (1747)
T PRK13709 1328 YTPDTIRVGTGDRMRFTKSD 1347 (1747)
T ss_pred cccccccccCCCEEEEcccC
Confidence 44556899999999997655
No 162
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=20.27 E-value=66 Score=27.98 Aligned_cols=18 Identities=11% Similarity=0.156 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 030950 41 LSIKATLKDVGVAVAATA 58 (168)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~ 58 (168)
|+||.+|+.+++++++++
T Consensus 1 ~~RR~fl~~~~~~~~~~~ 18 (328)
T PRK10882 1 MNRRNFLKAASAGALLAG 18 (328)
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 579999998766555444
No 163
>PF12338 RbcS: Ribulose-1,5-bisphosphate carboxylase small subunit; InterPro: IPR024680 This domain is found in the N-terminal region of the small subunit of ribulose-1,5-bisphosphate in plants. It contains a conserved APF sequence motif. There are also two completely conserved residues (L and P) that may be functionally important.
Probab=20.04 E-value=45 Score=20.75 Aligned_cols=12 Identities=58% Similarity=0.803 Sum_probs=9.0
Q ss_pred eeccccccCcCC
Q 030950 10 TVPTFTGLKAGA 21 (168)
Q Consensus 10 ~~~~~~~~~~~~ 21 (168)
.+--|+|||..+
T Consensus 23 mVAPFtGLKS~a 34 (45)
T PF12338_consen 23 MVAPFTGLKSTA 34 (45)
T ss_pred eeeccccccccc
Confidence 355799999854
Done!