BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030954
(168 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FXT|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Nudt6
pdb|3FXT|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Nudt6
pdb|3FXT|C Chain C, Crystal Structure Of The N-Terminal Domain Of Human Nudt6
pdb|3FXT|D Chain D, Crystal Structure Of The N-Terminal Domain Of Human Nudt6
pdb|3FXT|E Chain E, Crystal Structure Of The N-Terminal Domain Of Human Nudt6
pdb|3FXT|F Chain F, Crystal Structure Of The N-Terminal Domain Of Human Nudt6
pdb|3FXT|G Chain G, Crystal Structure Of The N-Terminal Domain Of Human Nudt6
pdb|3FXT|H Chain H, Crystal Structure Of The N-Terminal Domain Of Human Nudt6
Length = 113
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 16 LNGINDNYGGVVVQMN-----EPMDPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLV 70
L G D +GG+ V++ + +D F L++++ WR + + VW+ +PI + +
Sbjct: 25 LQGELDRFGGISVRLARLDALDRLDAAAFQKGLQAAVQQWRSEGRTAVWLHIPILQSRFI 84
Query: 71 EPAVKEGFWFHHAEPNYLMLVYWIPGG 97
PA GF FHHAE + L W+ G
Sbjct: 85 APAASLGFCFHHAESDSSTLTLWLREG 111
>pdb|3H95|A Chain A, Crystal Structure Of The Nudix Domain Of Nudt6
Length = 199
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 96 GGANTLPANASHRVGV-GAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVA 154
G N + SH+VGV GA R++LVVQ+ R + +WKFP G+ + EDI
Sbjct: 14 GTENLYFQSMSHQVGVAGAVFDESTRKILVVQD---RNKLKNMWKFPGGLSEPEEDIGDT 70
Query: 155 AVREVKEETSV 165
AVREV EET +
Sbjct: 71 AVREVFEETGI 81
>pdb|1VC8|A Chain A, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1-Ap6a Complex
pdb|1VC8|B Chain B, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1-Ap6a Complex
pdb|1VCD|A Chain A, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1
pdb|1VCD|B Chain B, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1
Length = 126
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 33/57 (57%), Gaps = 6/57 (10%)
Query: 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSV 165
+G G V N KREVL++++ G W FP G + GE + AAVREV EET V
Sbjct: 3 LGAGGVVFNAKREVLLLRDR------MGFWVFPKGHPEPGESLEEAAVREVWEETGV 53
>pdb|1F3Y|A Chain A, Solution Structure Of The Nudix Enzyme Diadenosine
Tetraphosphate Hydrolase From Lupinus Angustifolius L.
pdb|1JKN|A Chain A, Solution Structure Of The Nudix Enzyme Diadenosine
Tetraphosphate Hydrolase From Lupinus Angustifolius
Complexed With Atp
Length = 165
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVS 166
+R VG +MN +++ + R W+ P G +DEGED AA+RE++EET V+
Sbjct: 13 YRRNVGICLMNNDKKIFA----ASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVT 68
>pdb|1VC9|A Chain A, Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydrolase
E50q Mutant- Mg2+-atp Complex
pdb|1VC9|B Chain B, Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydrolase
E50q Mutant- Mg2+-atp Complex
Length = 126
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 6/57 (10%)
Query: 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSV 165
+G G V N KREVL++++ G W FP G + GE + AAVREV E+T V
Sbjct: 3 LGAGGVVFNAKREVLLLRDR------MGFWVFPKGHPEPGESLEEAAVREVWEQTGV 53
>pdb|1SJY|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 From
Deinococcus Radiodurans
pdb|1SOI|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 In Complex
With Sm+3
pdb|1SU2|A Chain A, Crystal Structure Of The Nudix Hydrolase Dr1025 In Complex
With Atp
pdb|1SU2|B Chain B, Crystal Structure Of The Nudix Hydrolase Dr1025 In Complex
With Atp
pdb|1SZ3|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 In Complexed
With Gnp And Mg+2
pdb|1SZ3|B Chain B, Crystal Structure Of Nudix Hydrolase Dr1025 In Complexed
With Gnp And Mg+2
Length = 159
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 110 GVGAFVMNGKREVLVVQENS--GRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167
G ++N + ++L+VQE G G+W P+G V++GE+ AAVRE EET + +
Sbjct: 15 AAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRV 74
Query: 168 N 168
Sbjct: 75 R 75
>pdb|3HHJ|A Chain A, Crystal Structure Of Mutator Mutt From Bartonella Henselae
pdb|3HHJ|B Chain B, Crystal Structure Of Mutator Mutt From Bartonella Henselae
Length = 158
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 97 GANTLPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAV 156
G ++P +S + V +++ VL+ Q G+ G+W+FP G V++GE + +
Sbjct: 18 GPGSMPIKSSLLIVVACALLDQDNRVLLTQRPEGK-SLAGLWEFPGGKVEQGETPEASLI 76
Query: 157 REVKEETSVSIN 168
RE++EE V +
Sbjct: 77 RELEEELGVHVQ 88
>pdb|3GG6|A Chain A, Crystal Structure Of The Nudix Domain Of Human Nudt18
Length = 156
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 95 PGGANTLPANASHRVG--VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDIC 152
P G P V V A ++ + EVL++QE RG+ W P G ++ GE I
Sbjct: 5 PAGEPPAPVRLRKNVCYVVLAVFLSEQDEVLLIQEAKRECRGS--WYLPAGRMEPGETIV 62
Query: 153 VAAVREVKEETSV 165
A REVKEE +
Sbjct: 63 EALQREVKEEAGL 75
>pdb|3R03|A Chain A, The Crystal Structure Of Nudix Hydrolase From
Rhodospirillum Rubrum
pdb|3R03|B Chain B, The Crystal Structure Of Nudix Hydrolase From
Rhodospirillum Rubrum
Length = 144
Score = 34.7 bits (78), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSIN 168
A +++ VL+ Q G+ G+W+FP G ++ GE A VRE+ EE V
Sbjct: 11 TAAALIDPDGRVLLAQRPPGKSLA-GLWEFPGGKLEPGETPEAALVRELAEELGVDTR 67
>pdb|4DYW|A Chain A, Crystal Structure Of Mutt Nudix Hydrolase From
Burkholderia Pseudomallei
pdb|4DYW|B Chain B, Crystal Structure Of Mutt Nudix Hydrolase From
Burkholderia Pseudomallei
Length = 157
Score = 34.7 bits (78), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 97 GANTLPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAV 156
G ++ RVG GA ++ R +L+ ++ R G W P G VD E + A
Sbjct: 18 GPGSMQHTEQPRVGCGAAIVRDGRILLIKRK---RAPEAGCWGLPGGKVDWLEPVERAVC 74
Query: 157 REVKEETSVSIN 168
RE++EE +++
Sbjct: 75 REIEEELGIALE 86
>pdb|1KT9|A Chain A, Crystal Structure Of C. Elegans Ap4a Hydrolase
pdb|1KTG|A Chain A, Crystal Structure Of A C. Elegans Ap4a Hydrolase Binary
Complex
pdb|1KTG|B Chain B, Crystal Structure Of A C. Elegans Ap4a Hydrolase Binary
Complex
Length = 138
Score = 34.7 bits (78), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 116 MNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVS 166
+ GK E L++Q + W P G VD GED AA+RE KEE +++
Sbjct: 14 LAGKIEFLLLQASYPPHH----WTPPKGHVDPGEDEWQAAIRETKEEANIT 60
>pdb|2O1C|A Chain A, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O1C|B Chain B, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O1C|C Chain C, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O1C|D Chain D, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O5W|A Chain A, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
pdb|2O5W|B Chain B, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
pdb|2O5W|C Chain C, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
pdb|2O5W|D Chain D, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
Length = 150
Score = 34.3 bits (77), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167
+ V + + KR +++ + + F W+ TG V+EGE AA+REVKEE ++ +
Sbjct: 12 ILVVIYAQDTKRVLMLQRRDDPDF-----WQSVTGSVEEGETAPQAAMREVKEEVTIDV 65
>pdb|3GRN|A Chain A, Crystal Structure Of Mutt Protein From Methanosarcina
Mazei Go1
pdb|3GRN|B Chain B, Crystal Structure Of Mutt Protein From Methanosarcina
Mazei Go1
Length = 153
Score = 33.9 bits (76), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167
+ V A + N K E L+++ + G W P G V+ E + REV EET +++
Sbjct: 9 ISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGITM 67
>pdb|3I9X|A Chain A, Crystal Structure Of A Mutt/nudix Family Protein From
Listeria Innocua
Length = 187
Score = 33.1 bits (74), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 136 GIWKFPTGVVDEGEDICVAAVREVKEETSVS 166
G W P G VDE E AA RE++EETS++
Sbjct: 67 GKWAVPGGFVDENESAEQAAERELEEETSLT 97
>pdb|3DKU|A Chain A, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|B Chain B, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|C Chain C, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|D Chain D, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|E Chain E, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|F Chain F, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|G Chain G, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|H Chain H, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|A Chain A, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|B Chain B, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|C Chain C, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|D Chain D, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|E Chain E, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|F Chain F, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|G Chain G, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|H Chain H, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|I Chain I, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|J Chain J, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|K Chain K, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|L Chain L, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
Length = 153
Score = 33.1 bits (74), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 113 AFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVS 166
A V++ + + LVV+E G +W P G ++ E + AA RE+ EET +S
Sbjct: 9 ACVVHAEGKFLVVEET---INGKALWNQPAGHLEADETLVEAAARELWEETGIS 59
>pdb|2FML|A Chain A, Crystal Structure Of MuttNUDIX FAMILY PROTEIN FROM
ENTEROCOCCUS Faecalis
pdb|2FML|B Chain B, Crystal Structure Of MuttNUDIX FAMILY PROTEIN FROM
ENTEROCOCCUS Faecalis
Length = 273
Score = 32.7 bits (73), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 121 EVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSIN 168
+VL++Q FR + W P G V+ E + +RE KEET V I+
Sbjct: 57 KVLLIQRKGHPFRNS--WALPGGFVNRNESTEDSVLRETKEETGVVIS 102
>pdb|3GWY|A Chain A, Crystal Structure Of Putative Ctp Pyrophosphohydrolase
From Bacteroides Fragilis
pdb|3GWY|B Chain B, Crystal Structure Of Putative Ctp Pyrophosphohydrolase
From Bacteroides Fragilis
Length = 140
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 109 VGVGAFVMNGKREVLVVQENSGRFRGTGI-WKFPTGVVDEGEDICVAAVREVKEETSVSI 167
+ V A V+ + L VQ +F T ++FP G V+EGE + A RE+ EE I
Sbjct: 6 IEVVAAVIRLGEKYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYVI 65
Query: 168 N 168
Sbjct: 66 E 66
>pdb|3F13|A Chain A, Crystal Structure Of Putative Nudix Hydrolase Family
Member From Chromobacterium Violaceum
pdb|3F13|B Chain B, Crystal Structure Of Putative Nudix Hydrolase Family
Member From Chromobacterium Violaceum
Length = 163
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 101 LPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVK 160
LP++ + R + +G VLV GR + P G + GE A +RE++
Sbjct: 11 LPSDLARRATAIIEMPDG---VLVTASRGGR------YNLPGGKANRGELRSQALIREIR 61
Query: 161 EETSVSIN 168
EET + IN
Sbjct: 62 EETGLRIN 69
>pdb|2DSC|A Chain A, Crystal Structure Of Human Adp-ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Adp-ribose
pdb|2DSC|B Chain B, Crystal Structure Of Human Adp-ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Adp-ribose
pdb|2DSD|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Amp
pdb|2DSD|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Amp
Length = 212
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 20/25 (80%)
Query: 139 KFPTGVVDEGEDICVAAVREVKEET 163
+FP G++D+GE AA+RE++EET
Sbjct: 95 EFPAGLIDDGETPEAAALRELEEET 119
>pdb|2DSB|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|C Chain C, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|D Chain D, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
Length = 227
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 20/25 (80%)
Query: 139 KFPTGVVDEGEDICVAAVREVKEET 163
+FP G++D+GE AA+RE++EET
Sbjct: 93 EFPAGLIDDGETPEAAALRELEEET 117
>pdb|3BM4|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Ampcpr
pdb|3BM4|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Ampcpr
Length = 210
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 20/25 (80%)
Query: 139 KFPTGVVDEGEDICVAAVREVKEET 163
+FP G++D+GE AA+RE++EET
Sbjct: 93 EFPAGLIDDGETPEAAALRELEEET 117
>pdb|3I7U|A Chain A, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|B Chain B, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|C Chain C, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|D Chain D, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7V|A Chain A, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
pdb|3I7V|B Chain B, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
Length = 134
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Query: 121 EVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVS 166
EVL+++ S +W FP G ++ GE AVREV EET V
Sbjct: 16 EVLLIKTPSN------VWSFPKGNIEPGEKPEETAVREVWEETGVK 55
>pdb|3AC9|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgdp
And Manganese
pdb|3AC9|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgdp
And Manganese
pdb|3L85|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgmp
pdb|3L85|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgmp
Length = 195
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 20/25 (80%)
Query: 139 KFPTGVVDEGEDICVAAVREVKEET 163
+FP G++D+GE AA+RE++EET
Sbjct: 80 EFPAGLIDDGETPEAAALRELEEET 104
>pdb|3ACA|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dadp
And Manganese
pdb|3ACA|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dadp
And Manganese
Length = 196
Score = 31.2 bits (69), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 20/25 (80%)
Query: 139 KFPTGVVDEGEDICVAAVREVKEET 163
+FP G++D+GE AA+RE++EET
Sbjct: 81 EFPAGLIDDGETPEAAALRELEEET 105
>pdb|2QJT|B Chain B, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE COMPLEXED
With Amp And Mn Ion From Francisella Tularensis
pdb|2QJT|A Chain A, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE COMPLEXED
With Amp And Mn Ion From Francisella Tularensis
pdb|2R5W|B Chain B, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE FROM
Francisella Tularensis
pdb|2R5W|A Chain A, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE FROM
Francisella Tularensis
Length = 352
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167
V V A V+ +L+VQ + G +W P G ++ E I A +RE+ EET++++
Sbjct: 209 VTVDALVIVNDH-ILMVQRKAHP--GKDLWALPGGFLECDETIAQAIIRELFEETNINL 264
>pdb|1V8I|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase
pdb|1V8L|A Chain A, Structure Analysis Of The Adp-Ribose Pyrophosphatase
Complexed With Adp-Ribose
pdb|1V8M|A Chain A, Crystal Structure Analysis Of Adp-Ribose Pyrophosphatase
Complexed With Adp-Ribose And Gd
pdb|1V8N|A Chain A, Crystal Structure Analysis Of The Adp-ribose
Pyrophosphatase Complexed With Zn
pdb|1V8S|A Chain A, Crystal Structure Analusis Of The Adp-Ribose
Pyrophosphatase Complexed With Amp And Mg
pdb|1V8T|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Complexed With Ribose-5'-Phosphate And
Zn
pdb|1V8R|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Complexed With Adp-Ribose And Zn
Length = 170
Score = 30.8 bits (68), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 106 SHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSV 165
H+ V + R + V Q G + P G+++ GED AA RE+ EET +
Sbjct: 32 EHKPAVAVIALREGRMLFVRQMRPAV--GLAPLEIPAGLIEPGEDPLEAARRELAEETGL 89
Query: 166 S 166
S
Sbjct: 90 S 90
>pdb|3SMD|A Chain A, Crystal Structure Of A MutNUDIX FAMILY PROTEIN FROM
BACILLUS Thuringiensis
Length = 153
Score = 30.8 bits (68), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSIN 168
V A + N + E+L ++ G W P G ++ GE A +REV EET + +
Sbjct: 24 VAAVIKNEQGELLF------QYPGGEYWSLPAGAIEPGETPEEAVIREVWEETGLKVQ 75
>pdb|2A6T|A Chain A, Crystal Structure Of S.Pombe Mrna Decapping Enzyme Dcp2p
pdb|2A6T|B Chain B, Crystal Structure Of S.Pombe Mrna Decapping Enzyme Dcp2p
Length = 271
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 133 RGTGIWKFPTGVVDEGEDICVAAVREVKEET 163
+ + W FP G +D+ E A+REV EET
Sbjct: 123 KASSGWGFPKGKIDKDESDVDCAIREVYEET 153
>pdb|2QKM|B Chain B, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|D Chain D, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|F Chain F, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|H Chain H, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
Length = 266
Score = 30.8 bits (68), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 133 RGTGIWKFPTGVVDEGEDICVAAVREVKEET 163
+ + W FP G +D+ E A+REV EET
Sbjct: 118 KASSGWGFPKGKIDKDESDVDCAIREVYEET 148
>pdb|3O8S|A Chain A, Crystal Structure Of An Adp-Ribose Pyrophosphatase
(Ssu98_1448) From Streptococcus Suis 89-1591 At 2.27 A
Resolution
Length = 206
Score = 30.0 bits (66), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 121 EVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167
++L+VQEN G +W P G D + + V+EVKEE + +
Sbjct: 82 KILLVQENDG------LWSLPGGWCDVDQSVKDNVVKEVKEEAGLDV 122
>pdb|2KDV|A Chain A, Solution Structure Of Rna Pyrophosphohydrolase Rpph From
Escherichia Coli
Length = 164
Score = 30.0 bits (66), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 104 NASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEET 163
+ +R VG + N + +V+ + RF G W+FP G ++ GE A RE+ EE
Sbjct: 4 DDGYRPNVGIVICNRQGQVMWAR----RF-GQHSWQFPQGGINPGESAEQAMYRELFEEV 58
Query: 164 SVS 166
+S
Sbjct: 59 GLS 61
>pdb|1V8V|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E86q Mutant, Complexed With
Adp-Ribose And Mg
pdb|1V8Y|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E86q Mutant, Complexed With
Adp-Ribose And Zn
Length = 170
Score = 29.6 bits (65), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 106 SHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSV 165
H+ V + R + V Q G + P G+++ GED AA RE+ E+T +
Sbjct: 32 EHKPAVAVIALREGRMLFVRQMRPAV--GLAPLEIPAGLIEPGEDPLEAARRELAEQTGL 89
Query: 166 S 166
S
Sbjct: 90 S 90
>pdb|1V8U|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E82q Mutant With So4 And Mg
pdb|1V8W|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E82q Mutant, Complexed With So4 And
Zn
Length = 170
Score = 29.6 bits (65), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 106 SHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSV 165
H+ V + R + V Q G + P G+++ GED AA R++ EET +
Sbjct: 32 EHKPAVAVIALREGRMLFVRQMRPAV--GLAPLEIPAGLIEPGEDPLEAARRQLAEETGL 89
Query: 166 S 166
S
Sbjct: 90 S 90
>pdb|2YVM|A Chain A, Crystal Structure Of Ndx2 In Complex With Mg2+ From
Thermus Thermophilus Hb8
pdb|2YVN|A Chain A, Crystal Structure Of Ndx2 From Thermus Thermophilus Hb8
pdb|2YVO|A Chain A, Crystal Structure Of Ndx2 In Complex With Mg2+ And Amp
From Thermus Thermophilus Hb8
pdb|2YVP|A Chain A, Crystal Structure Of Ndx2 In Complex With Mg2+ And Ampcpr
From Thermus Thermophilus Hb8
Length = 182
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 134 GTGIWKFPTGVVDEGEDICVAAVREVKEE 162
G + + P G VDEGE AA RE++EE
Sbjct: 66 GKFLLEVPAGKVDEGETPEAAARRELREE 94
>pdb|3EXQ|A Chain A, Crystal Structure Of A Nudix Family Hydrolase From
Lactobacillus Brevis
Length = 161
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 139 KFPTGVVDEGEDICVAAVREVKEETSVSIN 168
FP G V+ GE AA+REV EET + ++
Sbjct: 40 SFPGGHVEVGEPCATAAIREVFEETGLRLS 69
>pdb|1NQY|A Chain A, The Structure Of A Coa Pyrophosphatase From D. Radiodurans
pdb|1NQZ|A Chain A, The Structure Of A Coa Pyrophosphatase From D. Radiodurans
Complexed With A Magnesium Ion
Length = 194
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%)
Query: 113 AFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVS 166
A VL+ +S G FP G +D GE AA+RE +EE ++
Sbjct: 41 ALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALD 94
>pdb|1I17|A Chain A, Nmr Structure Of Mouse Doppel 51-157
Length = 107
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 112 GAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEG 148
GAF+ G++ + R+ W+FP G+ EG
Sbjct: 8 GAFIKQGRKLDIDFGAEGNRYYAANYWQFPDGIYYEG 44
>pdb|2JVB|A Chain A, Solution Structure Of Catalytic Domain Of Ydcp2
Length = 146
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 138 WKFPTGVVDEGEDICVAAVREVKEE 162
W FP G + + E+ +REVKEE
Sbjct: 30 WSFPRGKISKDENDIDCCIREVKEE 54
>pdb|3Q93|A Chain A, Crystal Structure Of Human 8-Oxo-Dgtpase (Mth1)
pdb|3Q93|B Chain B, Crystal Structure Of Human 8-Oxo-Dgtpase (Mth1)
Length = 176
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Query: 94 IPGGANTLPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICV 153
+P G++ + R+ V+ +R +L +++ R G G W G V EGE I
Sbjct: 15 VPRGSHM----GASRLYTLVLVLQPQRVLLGMKK---RGFGAGRWNGFGGKVQEGETIED 67
Query: 154 AAVREVKEETSVSIN 168
A RE++EE+ ++++
Sbjct: 68 GARRELQEESGLTVD 82
>pdb|3U53|A Chain A, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|B Chain B, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|C Chain C, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|D Chain D, Crystal Structure Of Human Ap4a Hydrolase
Length = 155
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 115 VMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVS 166
V N E L++Q + G W P G V+ GED A+RE +EE +
Sbjct: 19 VDNNAIEFLLLQASDGIHH----WTPPKGHVEPGEDDLETALRETQEEAGIE 66
>pdb|2FVV|A Chain A, Human Diphosphoinositol Polyphosphate Phosphohydrolase 1
pdb|2Q9P|A Chain A, Human Diphosphoinositol Polyphosphate Phosphohydrolase 1,
Mg-F Complex
Length = 194
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSV 165
R F + EVL+V + R W P G ++ E+ VAAVREV EE V
Sbjct: 42 RAACLCFRSESEEEVLLVSSS----RHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGV 95
>pdb|2QJO|A Chain A, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE Pyrophosphatase (Nadm)
Complexed With Adprp And Nad From Synechocystis Sp.
pdb|2QJO|B Chain B, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE Pyrophosphatase (Nadm)
Complexed With Adprp And Nad From Synechocystis Sp.
pdb|2QJO|C Chain C, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE Pyrophosphatase (Nadm)
Complexed With Adprp And Nad From Synechocystis Sp
Length = 341
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 134 GTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167
G G+ P G + + E + +RE+KEET + +
Sbjct: 226 GLGLIALPGGFIKQNETLVEGMLRELKEETRLKV 259
>pdb|1IRY|A Chain A, Solution Structure Of The Hmth1, A Nucleotide Pool
Sanitization Enzyme
pdb|3ZR0|A Chain A, Crystal Structure Of Human Mth1 In Complex With 8-Oxo-Dgmp
pdb|3ZR0|B Chain B, Crystal Structure Of Human Mth1 In Complex With 8-Oxo-Dgmp
pdb|3ZR1|A Chain A, Crystal Structure Of Human Mth1
pdb|3ZR1|B Chain B, Crystal Structure Of Human Mth1
Length = 156
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 134 GTGIWKFPTGVVDEGEDICVAAVREVKEETSVSIN 168
G G W G V EGE I A RE++EE+ ++++
Sbjct: 28 GAGRWNGFGGKVQEGETIEDGARRELQEESGLTVD 62
>pdb|1VHZ|A Chain A, Crystal Structure Of Adp Compounds Hydrolase
pdb|1VHZ|B Chain B, Crystal Structure Of Adp Compounds Hydrolase
Length = 198
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 140 FPTGVVDEGEDICVAAVREVKEETSVSIN 168
F G++D GE + AA RE+KEE N
Sbjct: 79 FSKGLIDPGESVYEAANRELKEEVGFGAN 107
>pdb|3GZ8|A Chain A, Cocrystal Structure Of Nudix Domain Of Shewanella
Oneidensis Nrtr Complexed With Adp Ribose
pdb|3GZ8|B Chain B, Cocrystal Structure Of Nudix Domain Of Shewanella
Oneidensis Nrtr Complexed With Adp Ribose
pdb|3GZ8|C Chain C, Cocrystal Structure Of Nudix Domain Of Shewanella
Oneidensis Nrtr Complexed With Adp Ribose
pdb|3GZ8|D Chain D, Cocrystal Structure Of Nudix Domain Of Shewanella
Oneidensis Nrtr Complexed With Adp Ribose
Length = 162
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 117 NGKREVLVVQENSGRFRGTGIWKFPTGVVDE--GEDICVAAVREVKEETSV 165
+ + +VL+VQ ++ F G+W P G +DE E + +R++ E+T+V
Sbjct: 34 DQQLKVLLVQRSNHPF--LGLWGLPGGFIDETCDESLEQTVLRKLAEKTAV 82
>pdb|3GZ5|A Chain A, Crystal Structure Of Shewanella Oneidensis Nrtr
pdb|3GZ5|B Chain B, Crystal Structure Of Shewanella Oneidensis Nrtr
pdb|3GZ6|A Chain A, Crystal Structure Of Shewanella Oneidensis Nrtr Complexed
With A 27mer Dna
pdb|3GZ6|B Chain B, Crystal Structure Of Shewanella Oneidensis Nrtr Complexed
With A 27mer Dna
Length = 240
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 117 NGKREVLVVQENSGRFRGTGIWKFPTGVVDE--GEDICVAAVREVKEETSV 165
+ + +VL+VQ ++ F G+W P G +DE E + +R++ E+T+V
Sbjct: 34 DQQLKVLLVQRSNHPF--LGLWGLPGGFIDETCDESLEQTVLRKLAEKTAV 82
>pdb|1Q33|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt9
pdb|1QVJ|A Chain A, Structure Of Nudt9 Complexed With Ribose-5-Phosphate
Length = 292
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 131 RFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167
+ + G W P G VD GE I RE EE S+
Sbjct: 145 KRKDCGEWAIPGGXVDPGEKISATLKREFGEEALNSL 181
>pdb|1VHG|A Chain A, Crystal Structure Of Adp Compounds Hydrolase
pdb|1VHG|B Chain B, Crystal Structure Of Adp Compounds Hydrolase
Length = 198
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 140 FPTGVVDEGEDICVAAVREVKEETSVSIN 168
F G++D GE + AA RE+KEE N
Sbjct: 79 FSKGLIDPGESVYEAANRELKEEVGFGAN 107
>pdb|2KDW|A Chain A, Solution Structure Of Rpph Mutant E53a From Escherichia
Coli
Length = 164
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 104 NASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEET 163
+ +R VG + N + +V+ + RF G W+FP G ++ GE A R + EE
Sbjct: 4 DDGYRPNVGIVICNRQGQVMWAR----RF-GQHSWQFPQGGINPGESAEQAMYRALFEEV 58
Query: 164 SVS 166
+S
Sbjct: 59 GLS 61
>pdb|3EES|A Chain A, Structure Of The Rna Pyrophosphohydrolase Bdrpph
pdb|3EES|B Chain B, Structure Of The Rna Pyrophosphohydrolase Bdrpph
pdb|3EEU|A Chain A, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Holmium
pdb|3EEU|B Chain B, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Holmium
pdb|3EF5|A Chain A, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Dgtp
pdb|3EF5|B Chain B, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Dgtp
pdb|3FFU|A Chain A, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Gtp And Magnesium
pdb|3FFU|B Chain B, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Gtp And Magnesium
Length = 153
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 135 TGIWKFPTGVVDEGEDICVAAVREVKEETSVS 166
G W+FP G ++ GE A RE+ EE +
Sbjct: 47 AGQWEFPGGKIENGETPEEALARELNEELGIE 78
>pdb|2RRK|A Chain A, Solution Structure Of The E. Coli Orf135 Protein
Length = 140
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 102 PANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKE 161
P + + V A ++ ++L+ Q + G+W+F G V+ E A VRE++E
Sbjct: 2 PLGSMKMIEVVAAIIERDGKILLAQ-RPAQSDQAGLWEFAGGKVEPDESQRQALVRELRE 60
Query: 162 ETSV 165
E +
Sbjct: 61 ELGI 64
>pdb|1JRK|A Chain A, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
pdb|1JRK|B Chain B, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
pdb|1JRK|C Chain C, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
pdb|1JRK|D Chain D, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
pdb|1K26|A Chain A, Structure Of A Nudix Protein From Pyrobaculum Aerophilum
Solved By The Single Wavelength Anomolous Scattering
Method
pdb|1K26|B Chain B, Structure Of A Nudix Protein From Pyrobaculum Aerophilum
Solved By The Single Wavelength Anomolous Scattering
Method
pdb|1K2E|A Chain A, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum
pdb|1K2E|B Chain B, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum
Length = 156
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 112 GAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSIN 168
G V NGK VL+V + + G++ +P G V+ E A RE +EET + +
Sbjct: 6 GVLVENGK--VLLV-----KHKRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVE 55
>pdb|2B0V|A Chain A, Nudix Hydrolase From Nitrosomonas Europaea
Length = 153
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 113 AFVMNGKREVLVVQENSGRFRGTGI-WKFPTGVVDEGEDICVAAVREVKEETSVSI 167
A V+ + L+V+E RGT I P G ++ GE I A REV EET S
Sbjct: 12 AAVIEQDDKYLLVEEIP---RGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSF 64
>pdb|1XSA|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (E63a Mutant)
pdb|1XSB|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (E63a Mutant) In Complex With Atp. No Atp
Restraints Included
pdb|1XSC|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (e63a Mutant) In Complex With Atp
Length = 153
Score = 26.6 bits (57), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 115 VMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVS 166
V N E L++Q + G W P G V+ GED A+R +EE +
Sbjct: 24 VDNNAIEFLLLQASDGIHH----WTPPKGHVEPGEDDLETALRATQEEAGIE 71
>pdb|2V7Y|A Chain A, Crystal Structure Of The Molecular Chaperone Dnak From
Geobacillus Kaustophilus Hta426 In Post-Atp Hydrolysis
State
pdb|4ANI|C Chain C, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
pdb|4ANI|D Chain D, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
pdb|4ANI|G Chain G, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
pdb|4ANI|H Chain H, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
Length = 509
Score = 26.2 bits (56), Expect = 8.9, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 105 ASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGV 144
A ++ V V+ G+R + ++ GRF+ TGI P GV
Sbjct: 399 ADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPPAPRGV 438
>pdb|3CNG|A Chain A, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
pdb|3CNG|B Chain B, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
pdb|3CNG|C Chain C, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
pdb|3CNG|D Chain D, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
Length = 189
Score = 26.2 bits (56), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 121 EVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167
+VL+ + +RG W P G + E + A RE EE + +
Sbjct: 52 KVLLCKRAIAPYRGK--WTLPAGFXENNETLVQGAARETLEEANARV 96
>pdb|3FJY|A Chain A, Crystal Structure Of A Probable Mutt1 Protein From
Bifidobacterium Adolescentis
pdb|3FJY|B Chain B, Crystal Structure Of A Probable Mutt1 Protein From
Bifidobacterium Adolescentis
Length = 364
Score = 26.2 bits (56), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 138 WKFPTGVVDEGEDICVAAVREVKEET 163
W +P G +++ E AAVRE+ EET
Sbjct: 51 WSWPKGKLEQNETHRHAAVREIGEET 76
>pdb|2B06|A Chain A, Crystal Structure Of The MuttNUDIX FAMILY PROTEIN FROM
STREPTOCOCCUS Pneumoniae
Length = 155
Score = 26.2 bits (56), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 138 WKFPTGVVDEGEDICVAAVREVKEETSVSIN 168
+ FP G V+ E + +RE+ EET ++I
Sbjct: 38 YAFPGGHVENDEAFAESVIREIYEETGLTIQ 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,120,149
Number of Sequences: 62578
Number of extensions: 208354
Number of successful extensions: 489
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 432
Number of HSP's gapped (non-prelim): 65
length of query: 168
length of database: 14,973,337
effective HSP length: 92
effective length of query: 76
effective length of database: 9,216,161
effective search space: 700428236
effective search space used: 700428236
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)