Query 030954
Match_columns 168
No_of_seqs 306 out of 1600
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 07:03:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030954.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030954hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0648 Predicted NUDIX hydrol 100.0 9.8E-33 2.1E-37 226.0 13.3 155 13-167 19-174 (295)
2 cd04679 Nudix_Hydrolase_20 Mem 99.7 2.7E-16 5.9E-21 114.2 8.3 58 108-167 2-59 (125)
3 cd03430 GDPMH GDP-mannose glyc 99.7 2.4E-16 5.2E-21 118.2 7.8 60 106-167 10-69 (144)
4 PRK15434 GDP-mannose mannosyl 99.7 4.6E-16 1E-20 118.9 8.3 59 107-167 16-74 (159)
5 PRK09438 nudB dihydroneopterin 99.6 5.1E-16 1.1E-20 116.2 7.4 57 107-167 6-62 (148)
6 cd04670 Nudix_Hydrolase_12 Mem 99.6 5.7E-16 1.2E-20 112.8 7.3 58 107-167 1-58 (127)
7 PRK15472 nucleoside triphospha 99.6 1.1E-15 2.3E-20 113.6 7.6 58 110-167 5-62 (141)
8 COG1051 ADP-ribose pyrophospha 99.6 1.2E-15 2.6E-20 114.9 7.5 60 105-167 7-66 (145)
9 cd04700 DR1025_like DR1025 fro 99.6 1.6E-15 3.5E-20 113.3 7.9 59 107-167 12-70 (142)
10 PLN02325 nudix hydrolase 99.6 3.6E-15 7.8E-20 111.9 8.7 61 104-167 5-65 (144)
11 cd04678 Nudix_Hydrolase_19 Mem 99.6 2.7E-15 5.9E-20 109.4 7.6 58 108-167 2-59 (129)
12 cd04691 Nudix_Hydrolase_32 Mem 99.6 3.6E-15 7.8E-20 107.7 7.9 56 111-167 3-58 (117)
13 cd03671 Ap4A_hydrolase_plant_l 99.6 2.9E-15 6.4E-20 112.2 7.3 57 107-167 2-58 (147)
14 cd04681 Nudix_Hydrolase_22 Mem 99.6 3.4E-15 7.5E-20 108.9 7.4 56 110-167 3-58 (130)
15 cd04696 Nudix_Hydrolase_37 Mem 99.6 3.4E-15 7.4E-20 108.5 7.1 55 109-167 3-57 (125)
16 cd04682 Nudix_Hydrolase_23 Mem 99.6 3.4E-15 7.4E-20 108.2 7.0 56 112-167 4-60 (122)
17 cd04684 Nudix_Hydrolase_25 Con 99.6 3.1E-15 6.8E-20 108.1 6.8 55 110-167 2-56 (128)
18 PF00293 NUDIX: NUDIX domain; 99.6 5.5E-15 1.2E-19 107.1 7.8 60 108-167 2-61 (134)
19 cd04669 Nudix_Hydrolase_11 Mem 99.6 4.5E-15 9.8E-20 107.8 7.3 55 110-167 2-56 (121)
20 cd04671 Nudix_Hydrolase_13 Mem 99.6 6.2E-15 1.3E-19 107.8 8.0 56 110-167 2-57 (123)
21 cd04511 Nudix_Hydrolase_4 Memb 99.6 1.2E-14 2.5E-19 106.7 8.3 63 102-167 7-69 (130)
22 cd03674 Nudix_Hydrolase_1 Memb 99.6 9E-15 1.9E-19 108.5 7.7 54 109-167 3-57 (138)
23 cd04699 Nudix_Hydrolase_39 Mem 99.6 5.4E-15 1.2E-19 107.0 6.3 59 109-167 2-60 (129)
24 cd03424 ADPRase_NUDT5 ADP-ribo 99.6 1E-14 2.2E-19 107.3 7.5 59 108-167 2-60 (137)
25 cd04683 Nudix_Hydrolase_24 Mem 99.6 1E-14 2.2E-19 104.9 7.1 56 110-167 2-57 (120)
26 cd03672 Dcp2p mRNA decapping e 99.6 8.6E-15 1.9E-19 110.1 6.9 53 110-167 3-56 (145)
27 cd04677 Nudix_Hydrolase_18 Mem 99.6 1E-14 2.2E-19 106.4 6.9 56 107-167 6-61 (132)
28 cd04673 Nudix_Hydrolase_15 Mem 99.6 1E-14 2.2E-19 104.7 6.8 56 109-167 1-56 (122)
29 cd04697 Nudix_Hydrolase_38 Mem 99.6 9.6E-15 2.1E-19 106.7 6.7 58 110-167 2-60 (126)
30 cd04693 Nudix_Hydrolase_34 Mem 99.5 1E-14 2.2E-19 106.3 6.7 57 110-167 2-59 (127)
31 cd04680 Nudix_Hydrolase_21 Mem 99.5 1.1E-14 2.5E-19 104.4 6.5 53 110-167 2-54 (120)
32 cd04687 Nudix_Hydrolase_28 Mem 99.5 2.6E-14 5.7E-19 104.3 7.5 55 109-167 2-56 (128)
33 cd03673 Ap6A_hydrolase Diadeno 99.5 1.4E-14 3E-19 105.1 5.5 54 109-167 2-58 (131)
34 cd04690 Nudix_Hydrolase_31 Mem 99.5 3E-14 6.5E-19 102.1 7.0 52 111-167 3-54 (118)
35 PRK00714 RNA pyrophosphohydrol 99.5 4.3E-14 9.3E-19 107.4 8.0 57 107-167 7-63 (156)
36 cd03427 MTH1 MutT homolog-1 (M 99.5 3.6E-14 7.8E-19 104.3 7.0 54 111-167 4-57 (137)
37 cd04676 Nudix_Hydrolase_17 Mem 99.5 4.4E-14 9.6E-19 101.8 7.1 54 109-167 3-56 (129)
38 cd04672 Nudix_Hydrolase_14 Mem 99.5 4.6E-14 9.9E-19 102.4 7.0 54 108-167 2-55 (123)
39 cd03426 CoAse Coenzyme A pyrop 99.5 4.1E-14 8.8E-19 107.4 6.9 58 110-167 4-64 (157)
40 cd04694 Nudix_Hydrolase_35 Mem 99.5 6.4E-14 1.4E-18 105.2 7.9 59 109-167 2-60 (143)
41 cd04692 Nudix_Hydrolase_33 Mem 99.5 4.5E-14 9.8E-19 105.4 6.9 58 110-167 4-65 (144)
42 cd04664 Nudix_Hydrolase_7 Memb 99.5 4.6E-14 1E-18 103.0 6.6 55 110-167 3-59 (129)
43 cd03429 NADH_pyrophosphatase N 99.5 3.3E-14 7.1E-19 104.8 5.7 55 110-167 2-56 (131)
44 cd02885 IPP_Isomerase Isopente 99.5 5.6E-14 1.2E-18 107.4 6.9 60 108-167 30-90 (165)
45 PRK10546 pyrimidine (deoxy)nuc 99.5 9E-14 1.9E-18 102.0 7.7 57 110-167 5-61 (135)
46 PRK10776 nucleoside triphospha 99.5 1.3E-13 2.8E-18 99.6 8.3 57 110-167 6-62 (129)
47 cd03675 Nudix_Hydrolase_2 Cont 99.5 6.5E-14 1.4E-18 102.7 6.8 54 110-167 2-55 (134)
48 cd04689 Nudix_Hydrolase_30 Mem 99.5 8.3E-14 1.8E-18 101.1 6.9 53 109-167 2-54 (125)
49 cd04686 Nudix_Hydrolase_27 Mem 99.5 1E-13 2.3E-18 102.0 6.9 52 110-167 2-53 (131)
50 PRK15393 NUDIX hydrolase YfcD; 99.5 1.5E-13 3.2E-18 106.8 7.5 59 109-167 38-97 (180)
51 cd04688 Nudix_Hydrolase_29 Mem 99.5 1.6E-13 3.5E-18 99.7 7.1 52 110-167 3-54 (126)
52 TIGR00586 mutt mutator mutT pr 99.5 3.1E-13 6.8E-18 97.9 8.3 58 109-167 5-62 (128)
53 PRK05379 bifunctional nicotina 99.5 2E-13 4.4E-18 115.7 8.1 58 107-167 202-259 (340)
54 PRK03759 isopentenyl-diphospha 99.4 2E-13 4.4E-18 106.2 7.2 60 108-167 34-94 (184)
55 cd03428 Ap4A_hydrolase_human_l 99.4 1.3E-13 2.9E-18 100.3 5.6 52 110-167 4-58 (130)
56 cd04695 Nudix_Hydrolase_36 Mem 99.4 2.4E-13 5.3E-18 99.8 7.0 48 117-167 11-58 (131)
57 PRK11762 nudE adenosine nucleo 99.4 4.6E-13 9.9E-18 104.3 8.2 57 110-167 49-105 (185)
58 cd04666 Nudix_Hydrolase_9 Memb 99.4 2.9E-13 6.2E-18 98.9 6.5 52 111-167 3-57 (122)
59 cd04667 Nudix_Hydrolase_10 Mem 99.4 2.8E-13 6E-18 96.7 6.2 48 114-167 5-52 (112)
60 cd04685 Nudix_Hydrolase_26 Mem 99.4 5.2E-13 1.1E-17 99.0 7.7 58 110-167 2-59 (133)
61 PLN03143 nudix hydrolase; Prov 99.4 3E-12 6.6E-17 106.3 11.5 159 5-167 23-190 (291)
62 cd04661 MRP_L46 Mitochondrial 99.4 4E-13 8.7E-18 99.2 5.5 47 118-167 11-57 (132)
63 PRK00241 nudC NADH pyrophospha 99.4 4.7E-13 1E-17 109.5 6.4 66 98-167 122-187 (256)
64 cd03425 MutT_pyrophosphohydrol 99.4 1.1E-12 2.4E-17 93.5 7.2 56 111-167 4-59 (124)
65 cd04674 Nudix_Hydrolase_16 Mem 99.4 1.6E-12 3.4E-17 94.8 7.7 55 110-167 6-60 (118)
66 TIGR02150 IPP_isom_1 isopenten 99.4 1E-12 2.2E-17 100.0 6.6 57 109-167 28-85 (158)
67 cd04662 Nudix_Hydrolase_5 Memb 99.4 2.1E-12 4.7E-17 95.1 7.3 58 110-167 2-64 (126)
68 TIGR00052 nudix-type nucleosid 99.4 1.1E-12 2.4E-17 102.5 5.9 61 107-167 43-108 (185)
69 cd02883 Nudix_Hydrolase Nudix 99.3 2.3E-12 5.1E-17 90.9 6.7 55 110-167 2-56 (123)
70 TIGR02705 nudix_YtkD nucleosid 99.3 8.8E-12 1.9E-16 95.0 9.7 53 108-167 24-76 (156)
71 PRK10707 putative NUDIX hydrol 99.3 4.2E-12 9E-17 99.7 8.1 58 110-167 32-92 (190)
72 cd04665 Nudix_Hydrolase_8 Memb 99.3 5.7E-12 1.2E-16 91.8 7.1 50 111-167 3-52 (118)
73 cd03676 Nudix_hydrolase_3 Memb 99.3 8.5E-12 1.8E-16 96.5 8.5 55 113-167 39-96 (180)
74 KOG3084 NADH pyrophosphatase I 99.2 8.8E-12 1.9E-16 103.2 5.7 60 107-168 186-245 (345)
75 PRK10729 nudF ADP-ribose pyrop 99.2 2.1E-11 4.5E-16 96.6 7.6 60 108-167 49-113 (202)
76 PRK08999 hypothetical protein; 99.2 4.2E-11 9.2E-16 99.8 7.9 57 110-167 7-63 (312)
77 cd04663 Nudix_Hydrolase_6 Memb 99.2 4.2E-11 9.2E-16 88.3 6.5 51 111-167 3-55 (126)
78 COG0494 MutT NTP pyrophosphohy 99.2 6.9E-11 1.5E-15 85.0 6.3 44 120-167 24-68 (161)
79 PRK15009 GDP-mannose pyrophosp 99.2 1E-10 2.2E-15 91.9 7.7 60 107-167 44-109 (191)
80 PLN02709 nudix hydrolase 99.1 2E-10 4.4E-15 92.0 7.7 48 120-167 51-99 (222)
81 cd03670 ADPRase_NUDT9 ADP-ribo 99.1 1.6E-10 3.5E-15 90.4 4.8 42 120-166 49-90 (186)
82 COG2816 NPY1 NTP pyrophosphohy 99.0 5.3E-10 1.1E-14 91.9 6.2 66 99-168 135-200 (279)
83 KOG2839 Diadenosine and diphos 99.0 6.4E-10 1.4E-14 82.9 6.0 56 107-166 8-66 (145)
84 PLN02552 isopentenyl-diphospha 98.9 2.9E-09 6.3E-14 86.7 7.5 63 104-167 53-133 (247)
85 PLN02791 Nudix hydrolase homol 98.9 2.9E-09 6.3E-14 98.2 7.3 59 109-167 33-93 (770)
86 KOG3041 Nucleoside diphosphate 98.8 2.1E-08 4.5E-13 78.4 7.9 46 120-166 88-133 (225)
87 cd03431 DNA_Glycosylase_C DNA 98.5 6.2E-07 1.3E-11 63.4 7.0 50 114-164 8-57 (118)
88 KOG3069 Peroxisomal NUDIX hydr 98.3 2.6E-06 5.6E-11 68.4 6.6 58 110-167 45-106 (246)
89 COG4119 Predicted NTP pyrophos 98.1 8.9E-06 1.9E-10 59.8 5.6 57 110-167 5-67 (161)
90 KOG4195 Transient receptor pot 98.0 5.3E-06 1.2E-10 66.2 3.4 38 121-163 140-177 (275)
91 COG1443 Idi Isopentenyldiphosp 97.8 1.8E-05 4E-10 61.0 3.9 59 109-167 34-93 (185)
92 PLN02839 nudix hydrolase 97.8 0.00076 1.7E-08 57.8 12.8 117 34-166 147-265 (372)
93 PF14815 NUDIX_4: NUDIX domain 97.4 0.00026 5.6E-09 50.4 4.7 52 113-166 2-53 (114)
94 KOG2937 Decapping enzyme compl 96.7 0.00021 4.6E-09 60.1 -2.0 54 109-167 83-137 (348)
95 PF13869 NUDIX_2: Nucleotide h 96.4 0.016 3.5E-07 45.4 7.0 40 120-165 58-97 (188)
96 KOG1689 mRNA cleavage factor I 95.3 0.041 8.9E-07 42.6 5.1 47 112-164 74-122 (221)
97 KOG4432 Uncharacterized NUDIX 94.6 0.045 9.7E-07 45.9 3.9 32 137-168 80-111 (405)
98 PRK10880 adenine DNA glycosyla 92.3 0.28 6.1E-06 42.1 5.2 32 110-142 232-263 (350)
99 KOG0142 Isopentenyl pyrophosph 91.0 0.12 2.7E-06 40.9 1.5 58 110-167 54-121 (225)
100 KOG4432 Uncharacterized NUDIX 90.3 0.68 1.5E-05 39.0 5.4 31 137-167 285-315 (405)
101 TIGR01084 mutY A/G-specific ad 90.1 0.75 1.6E-05 38.2 5.5 31 111-142 230-260 (275)
102 KOG4548 Mitochondrial ribosoma 79.0 3.7 8E-05 33.7 4.4 42 120-164 139-181 (263)
103 COG4112 Predicted phosphoester 77.8 6.5 0.00014 30.4 5.2 52 114-166 67-128 (203)
104 PRK13910 DNA glycosylase MutY; 74.1 5.4 0.00012 33.4 4.3 27 114-143 192-218 (289)
105 KOG4313 Thiamine pyrophosphoki 71.0 4.5 9.7E-05 33.4 3.0 56 112-167 137-196 (306)
106 PF03487 IL13: Interleukin-13; 69.9 4.3 9.4E-05 23.8 2.0 24 140-163 13-36 (43)
107 COG1194 MutY A/G-specific DNA 67.0 5.1 0.00011 34.3 2.7 39 108-147 235-273 (342)
108 KOG2937 Decapping enzyme compl 57.1 2.6 5.6E-05 35.9 -0.8 65 99-166 229-294 (348)
109 PF14443 DBC1: DBC1 38.5 34 0.00073 25.2 2.7 32 136-167 24-58 (126)
110 PF12860 PAS_7: PAS fold 35.7 15 0.00033 25.2 0.5 43 110-157 5-47 (115)
111 TIGR02382 wecD_rffC TDP-D-fuco 32.5 73 0.0016 24.1 3.9 42 40-81 142-183 (191)
112 TIGR01575 rimI ribosomal-prote 30.9 88 0.0019 21.1 3.8 44 43-86 76-119 (131)
113 PF13420 Acetyltransf_4: Acety 29.4 1.3E+02 0.0029 21.2 4.7 50 40-89 95-145 (155)
114 PF09505 Dimeth_Pyl: Dimethyla 29.4 32 0.00069 29.7 1.5 23 144-166 408-430 (466)
115 PF00583 Acetyltransf_1: Acety 28.3 1.1E+02 0.0024 18.9 3.8 40 40-79 44-83 (83)
116 PF07026 DUF1317: Protein of u 23.1 71 0.0015 20.4 1.9 15 136-150 22-36 (60)
117 PRK10140 putative acetyltransf 22.4 2.2E+02 0.0047 20.1 4.7 47 43-89 100-147 (162)
118 PRK07198 hypothetical protein; 22.3 1.2E+02 0.0026 26.8 3.7 44 115-164 157-200 (418)
119 PF02290 SRP14: Signal recogni 20.3 1.1E+02 0.0023 21.1 2.5 30 35-65 2-31 (93)
120 KOG0648 Predicted NUDIX hydrol 20.1 36 0.00077 28.7 0.1 29 137-166 56-84 (295)
No 1
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=9.8e-33 Score=225.99 Aligned_cols=155 Identities=58% Similarity=0.962 Sum_probs=148.6
Q ss_pred ccceeccccCCCCEEEec-CCCCCHHHHHHHHHHHHHHHHHcCcceEEEeccccccccchhhhhccceeeecCCcEEEEE
Q 030954 13 NKFLNGINDNYGGVVVQM-NEPMDPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFHHAEPNYLMLV 91 (168)
Q Consensus 13 ~~~~~~~~d~~~gv~v~~-~~~~~~~~f~~~l~~~l~~w~~~~~~~vw~~~p~~~~~l~~~~~~~gf~~~~~~~~~~~l~ 91 (168)
...+.+..|+|+||.|+. ..+.|...|.+.|++|+++|+.+|+++||+++|...+++++.+++.||.|||+...|+|++
T Consensus 19 ~~~l~~~~D~~ggv~v~~~~~~~d~~~f~~~l~~Sl~~W~~~Gr~~iwl~l~~~~~~lV~~a~~~gf~~hHae~~~~~l~ 98 (295)
T KOG0648|consen 19 SSLLAGLSDRYGGVVVDIVPEPMDEKLFIEELRASLQKWYLQGRKGIWLKLPEELARLVEEAAKYGFDYHHAESLYVMLT 98 (295)
T ss_pred hhhhcccccccCCEEeecccCCCCHHHHHHHHHHHHHHHHHccCcccceechHHHHhHHHHHHhcCcEEecccccceeee
Confidence 567799999999999998 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCCCCCCcceeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 92 YWIPGGANTLPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 92 ~~l~~~~~~~~~~~~~~~~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
.|++..+.++|.++.|+++++++|+|.+++||+++.........|.|.+|+|.++++|++.++|+||++||||++.
T Consensus 99 ~Wl~e~~~~lP~~Ash~vgvg~~V~n~~~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~ 174 (295)
T KOG0648|consen 99 SWLREAPSTLPANASHRVGVGAFVLNKKKEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDT 174 (295)
T ss_pred eeeccccccCCCchhhheeeeeeEecCCceeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhCcch
Confidence 9999999999999999999999999988999999998777777899999999999999999999999999999864
No 2
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.67 E-value=2.7e-16 Score=114.25 Aligned_cols=58 Identities=40% Similarity=0.603 Sum_probs=52.2
Q ss_pred eeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 108 ~~~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
+++|+++|++.++++||++|...+ ..+.|.+|||++++||++.+||+||++||||+++
T Consensus 2 ~~~~~~~i~~~~~~vLL~~r~~~~--~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~ 59 (125)
T cd04679 2 RVGCGAAILRDDGKLLLVKRLRAP--EAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSI 59 (125)
T ss_pred ceEEEEEEECCCCEEEEEEecCCC--CCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCc
Confidence 568999999988999999987654 3589999999999999999999999999999875
No 3
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.66 E-value=2.4e-16 Score=118.18 Aligned_cols=60 Identities=22% Similarity=0.347 Sum_probs=53.6
Q ss_pred cceeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 106 SHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 106 ~~~~~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
.+.++|+++|++.++++||+||...+ .+|.|.+|||+++.||++.+||+||++||||+++
T Consensus 10 ~p~v~v~~vI~~~~g~vLl~~R~~~p--~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v 69 (144)
T cd03430 10 TPLVSIDLIVENEDGQYLLGKRTNRP--AQGYWFVPGGRIRKNETLTEAFERIAKDELGLEF 69 (144)
T ss_pred CCeEEEEEEEEeCCCeEEEEEccCCC--CCCcEECCCceecCCCCHHHHHHHHHHHHHCCCc
Confidence 34678999999998999999997654 3689999999999999999999999999999875
No 4
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.65 E-value=4.6e-16 Score=118.92 Aligned_cols=59 Identities=22% Similarity=0.335 Sum_probs=52.4
Q ss_pred ceeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 107 ~~~~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
..++|.++|++.+++|||+||...+ ..|.|+||||+++.|||+++||+||++||||+++
T Consensus 16 ~~~~v~~vI~~~~g~VLL~kR~~~~--~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v 74 (159)
T PRK15434 16 PLISLDFIVENSRGEFLLGKRTNRP--AQGYWFVPGGRVQKDETLEAAFERLTMAELGLRL 74 (159)
T ss_pred ceEEEEEEEECCCCEEEEEEccCCC--CCCcEECCceecCCCCCHHHHHHHHHHHHHCCcc
Confidence 3568888898888999999998644 4689999999999999999999999999999974
No 5
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.64 E-value=5.1e-16 Score=116.21 Aligned_cols=57 Identities=33% Similarity=0.522 Sum_probs=51.0
Q ss_pred ceeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 107 ~~~~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
+..+|++++++.++++||++|... ++.|++|||++|.||++.+||+||++||||+++
T Consensus 6 ~~~~v~~vi~~~~~~vLl~~r~~~----~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~ 62 (148)
T PRK09438 6 RPVSVLVVIYTPDLGVLMLQRADD----PDFWQSVTGSLEEGETPAQTAIREVKEETGIDV 62 (148)
T ss_pred CceEEEEEEEeCCCeEEEEEecCC----CCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCc
Confidence 457899999998899999988643 478999999999999999999999999999975
No 6
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.64 E-value=5.7e-16 Score=112.81 Aligned_cols=58 Identities=57% Similarity=0.840 Sum_probs=52.0
Q ss_pred ceeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 107 ~~~~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
|.++|+++|++.+++|||++|+.. .++.|.+|||+++.||++.+||+||++||||+++
T Consensus 1 ~~~~~~~~v~~~~~~vLl~~r~~~---~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~ 58 (127)
T cd04670 1 HTVGVGGLVLNEKNEVLVVQERNK---TPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDT 58 (127)
T ss_pred CeeEEEEEEEcCCCeEEEEEccCC---CCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCc
Confidence 567899999998899999988654 3589999999999999999999999999999875
No 7
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.62 E-value=1.1e-15 Score=113.61 Aligned_cols=58 Identities=24% Similarity=0.321 Sum_probs=48.4
Q ss_pred EEEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 110 ~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
.+.+.+++.++++||+||...+...+|.|.+|||++++||++.+||+||++||||+++
T Consensus 5 ~~~~~ii~~~~~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~ 62 (141)
T PRK15472 5 TIVCPLIQNDGAYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQL 62 (141)
T ss_pred eEEEEEEecCCEEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCce
Confidence 3444555557899999987654445699999999999999999999999999999864
No 8
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.62 E-value=1.2e-15 Score=114.90 Aligned_cols=60 Identities=37% Similarity=0.657 Sum_probs=52.0
Q ss_pred CcceeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 105 ASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 105 ~~~~~~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
....++|++++...+ +|||++|...| +.|.|.+|||+++.|||+++||.||++||||+++
T Consensus 7 ~~p~~~v~~~i~~~~-~iLLvrR~~~p--~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~ 66 (145)
T COG1051 7 RTPLVAVGALIVRNG-RILLVRRANEP--GAGYWALPGGFVEIGETLEEAARRELKEETGLRV 66 (145)
T ss_pred CCcceeeeEEEEeCC-EEEEEEecCCC--CCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcc
Confidence 345567887777665 99999999887 4689999999999999999999999999999985
No 9
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.62 E-value=1.6e-15 Score=113.29 Aligned_cols=59 Identities=41% Similarity=0.696 Sum_probs=51.8
Q ss_pred ceeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 107 ~~~~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
...+|+++|++.++++||++++..+ .++.|++|||++++||++++||+||++||||+++
T Consensus 12 ~~~av~~vv~~~~~~vLL~~r~~~~--~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~ 70 (142)
T cd04700 12 EARAAGAVILNERNDVLLVQEKGGP--KKGLWHIPSGAVEDGEFPQDAAVREACEETGLRV 70 (142)
T ss_pred eeeeEEEEEEeCCCcEEEEEEcCCC--CCCeEECCceecCCCCCHHHHHHHHHHHhhCcee
Confidence 4458888999988899999886554 4689999999999999999999999999999875
No 10
>PLN02325 nudix hydrolase
Probab=99.60 E-value=3.6e-15 Score=111.93 Aligned_cols=61 Identities=36% Similarity=0.542 Sum_probs=52.1
Q ss_pred CCcceeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 104 NASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 104 ~~~~~~~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
+...++++++++++. ++|||+||...+ +.|.|.+|||+++.||++.+||+||++||||+++
T Consensus 5 ~~~p~~~v~~vi~~~-~~vLL~rr~~~~--~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v 65 (144)
T PLN02325 5 EPIPRVAVVVFLLKG-NSVLLGRRRSSI--GDSTFALPGGHLEFGESFEECAAREVKEETGLEI 65 (144)
T ss_pred CCCCeEEEEEEEEcC-CEEEEEEecCCC--CCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCC
Confidence 345577888888875 699999987654 3589999999999999999999999999999975
No 11
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.60 E-value=2.7e-15 Score=109.40 Aligned_cols=58 Identities=45% Similarity=0.744 Sum_probs=52.3
Q ss_pred eeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 108 ~~~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
+++++++|++.++++||++|..++ ..+.|.+|||+++.||++.+||.||++||||+++
T Consensus 2 ~~~v~~ii~~~~~~iLl~~r~~~~--~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~ 59 (129)
T cd04678 2 RVGVGVFVLNPKGKVLLGKRKGSH--GAGTWALPGGHLEFGESFEECAAREVLEETGLHI 59 (129)
T ss_pred ceEEEEEEECCCCeEEEEeccCCC--CCCeEECCcccccCCCCHHHHHHHHHHHHhCCcc
Confidence 568899999998999999998653 4689999999999999999999999999999875
No 12
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.60 E-value=3.6e-15 Score=107.72 Aligned_cols=56 Identities=27% Similarity=0.372 Sum_probs=47.2
Q ss_pred EEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 111 v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
|+++++++ +++||++|...+...+|.|.||||++++||++++||+||++||||+++
T Consensus 3 v~~vi~~~-~~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~ 58 (117)
T cd04691 3 VVGVLFSD-DKVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDP 58 (117)
T ss_pred EEEEEEEC-CEEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCc
Confidence 44456655 899999987654335799999999999999999999999999999974
No 13
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.59 E-value=2.9e-15 Score=112.25 Aligned_cols=57 Identities=40% Similarity=0.631 Sum_probs=51.3
Q ss_pred ceeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 107 ~~~~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
++.++++++++.++++||++|...+ +.|.+|||++++||++.+||+||++||||+++
T Consensus 2 ~~~~v~~ii~~~~~~vLL~~r~~~~----~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~ 58 (147)
T cd03671 2 YRPNVGVVLFNEDGKVFVGRRIDTP----GAWQFPQGGIDEGEDPEQAALRELEEETGLDP 58 (147)
T ss_pred CCceEEEEEEeCCCEEEEEEEcCCC----CCEECCcCCCCCCcCHHHHHHHHHHHHHCCCc
Confidence 3468899999988999999997653 79999999999999999999999999999974
No 14
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.59 E-value=3.4e-15 Score=108.86 Aligned_cols=56 Identities=38% Similarity=0.659 Sum_probs=50.1
Q ss_pred EEEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 110 ~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
+|.+++++.++++||++|...+ .++.|.+|||+++.||++.+||.||++||||+++
T Consensus 3 av~~~i~~~~~~vLL~~r~~~~--~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~ 58 (130)
T cd04681 3 AVGVLILNEDGELLVVRRAREP--GKGTLDLPGGFVDPGESAEEALIREIREETGLKV 58 (130)
T ss_pred eEEEEEEcCCCcEEEEEecCCC--CCCcEeCCceeecCCCCHHHHHHHHHHHHhCCcc
Confidence 5777888988999999997654 3589999999999999999999999999999875
No 15
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.59 E-value=3.4e-15 Score=108.52 Aligned_cols=55 Identities=35% Similarity=0.589 Sum_probs=48.9
Q ss_pred eEEEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 109 ~~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
++|+++|++.++++||+|+.. ..|.|.+|||+++.||++.+||+||++||||+++
T Consensus 3 ~~v~~~i~~~~~~iLL~r~~~----~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~ 57 (125)
T cd04696 3 VTVGALIYAPDGRILLVRTTK----WRGLWGVPGGKVEWGETLEEALKREFREETGLKL 57 (125)
T ss_pred cEEEEEEECCCCCEEEEEccC----CCCcEeCCceeccCCCCHHHHHHHHHHHHhCCcc
Confidence 578889999889999998753 2489999999999999999999999999999975
No 16
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.59 E-value=3.4e-15 Score=108.22 Aligned_cols=56 Identities=21% Similarity=0.399 Sum_probs=46.7
Q ss_pred EEEEEcCCceEEEEEeecC-CCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 112 GAFVMNGKREVLVVQENSG-RFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 112 ~~~v~~~~~~vLlv~r~~~-~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
+++++.+++++||++|... ....+|.|.+|||+++.||++++||+||++||||+++
T Consensus 4 ~~~~~~~~g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~ 60 (122)
T cd04682 4 ALALLIGDGRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTL 60 (122)
T ss_pred EEEEEEcCCEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCcc
Confidence 3344444499999999765 3345799999999999999999999999999999975
No 17
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.59 E-value=3.1e-15 Score=108.13 Aligned_cols=55 Identities=35% Similarity=0.555 Sum_probs=48.7
Q ss_pred EEEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 110 ~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
++.++|+++ +++||++|...+ .++.|.+|||+++.||++.+||+||++||||+++
T Consensus 2 ~~~~ii~~~-~~vLl~~~~~~~--~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~ 56 (128)
T cd04684 2 GAYAVIPRD-GKLLLIQKNGGP--YEGRWDLPGGGIEPGESPEEALHREVLEETGLTV 56 (128)
T ss_pred eeEEEEEeC-CEEEEEEccCCC--CCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEe
Confidence 567777776 899999998765 4689999999999999999999999999999875
No 18
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.58 E-value=5.5e-15 Score=107.06 Aligned_cols=60 Identities=33% Similarity=0.589 Sum_probs=54.1
Q ss_pred eeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 108 ~~~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
+.+|++++++.++++||++|...+...++.|.+|||++++||++.+||+||+.||||+++
T Consensus 2 ~~~v~~ii~~~~~~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~ 61 (134)
T PF00293_consen 2 RRAVGVIIFNEDGKVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDV 61 (134)
T ss_dssp EEEEEEEEEETTTEEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEE
T ss_pred CCEEEEEEEeCCcEEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhccccee
Confidence 468999999998899999998876445689999999999999999999999999999874
No 19
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.58 E-value=4.5e-15 Score=107.80 Aligned_cols=55 Identities=27% Similarity=0.436 Sum_probs=47.9
Q ss_pred EEEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 110 ~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
.++++++++++++||++|.... .+.|.||||+++.||++.+||+||++||||+++
T Consensus 2 ~~~~ii~~~~~~vLL~~r~~~~---~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~ 56 (121)
T cd04669 2 RASIVIINDQGEILLIRRIKPG---KTYYVFPGGGIEEGETPEEAAKREALEELGLDV 56 (121)
T ss_pred ceEEEEEeCCCEEEEEEEecCC---CCcEECCceeccCCCCHHHHHHHHHHHhhCeeE
Confidence 3566788877899999986542 478999999999999999999999999999875
No 20
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.58 E-value=6.2e-15 Score=107.77 Aligned_cols=56 Identities=41% Similarity=0.611 Sum_probs=49.3
Q ss_pred EEEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 110 ~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
.+++++++.++++||++|...+ ..+.|.+|||+++.||++.+||+||++||||+++
T Consensus 2 ~~~~vv~~~~~~vLl~~r~~~~--~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~ 57 (123)
T cd04671 2 IVAAVILNNQGEVLLIQEAKRS--CRGKWYLPAGRMEPGETIEEAVKREVKEETGLDC 57 (123)
T ss_pred EEEEEEEcCCCEEEEEEecCCC--CCCeEECceeecCCCCCHHHHHHHHHHHHHCCee
Confidence 3667788888999999987654 3589999999999999999999999999999975
No 21
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.57 E-value=1.2e-14 Score=106.69 Aligned_cols=63 Identities=24% Similarity=0.396 Sum_probs=52.2
Q ss_pred CCCCcceeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 102 PANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 102 ~~~~~~~~~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
..+..+.+.++++++++ +++||++|...+ ..|.|.+|||+++.||++++||+||++||||+++
T Consensus 7 ~~~~~~~~~v~~ii~~~-~~vLL~kr~~~~--~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~ 69 (130)
T cd04511 7 IHYQNPKIIVGCVPEWE-GKVLLCRRAIEP--RHGFWTLPAGFMENGETTEQGALRETWEEAGARV 69 (130)
T ss_pred ccCCCCcEEEEEEEecC-CEEEEEEecCCC--CCCeEECCcccccCCCCHHHHHHHHHHHHhCCEE
Confidence 34445566777777765 799999987654 3589999999999999999999999999999875
No 22
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.57 E-value=9e-15 Score=108.52 Aligned_cols=54 Identities=35% Similarity=0.609 Sum_probs=47.8
Q ss_pred eEEEEEEEcCC-ceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 109 VGVGAFVMNGK-REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 109 ~~v~~~v~~~~-~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
.++++++++++ ++|||++|+. .+.|.+|||++++||++++||.||++||||+++
T Consensus 3 ~~~~~~v~~~~~~~vLLv~r~~-----~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~ 57 (138)
T cd03674 3 FTASAFVVNPDRGKVLLTHHRK-----LGSWLQPGGHIDPDESLLEAALRELREETGIEL 57 (138)
T ss_pred EEEEEEEEeCCCCeEEEEEEcC-----CCcEECCceecCCCCCHHHHHHHHHHHHHCCCc
Confidence 36778888887 8999999864 378999999999999999999999999999964
No 23
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.56 E-value=5.4e-15 Score=107.01 Aligned_cols=59 Identities=32% Similarity=0.583 Sum_probs=51.5
Q ss_pred eEEEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 109 ~~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
++++++|+++++++||++|...+.+.+|.|.+|||++++||++.+||+||++||||+++
T Consensus 2 ~~v~~vv~~~~~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~ 60 (129)
T cd04699 2 VAVAALIVKDVGRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTV 60 (129)
T ss_pred ceEEEEEECCCCcEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEE
Confidence 46777788877899999998766445689999999999999999999999999999864
No 24
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.56 E-value=1e-14 Score=107.35 Aligned_cols=59 Identities=29% Similarity=0.419 Sum_probs=51.7
Q ss_pred eeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 108 ~~~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
..+|++++++.++++||+++.+.+. .++.|.+|||+++.||++.+||+||++||||+.+
T Consensus 2 ~~~v~v~~~~~~~~iLl~~~~~~~~-~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~ 60 (137)
T cd03424 2 PDAVAVLPYDDDGKVVLVRQYRPPV-GGWLLELPAGLIDPGEDPEEAARRELEEETGYEA 60 (137)
T ss_pred CCEEEEEEEcCCCeEEEEEeeecCC-CCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCc
Confidence 3578889999999999998765543 3579999999999999999999999999999976
No 25
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.56 E-value=1e-14 Score=104.94 Aligned_cols=56 Identities=34% Similarity=0.614 Sum_probs=47.1
Q ss_pred EEEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 110 ~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
+|.++|++ ++++||++|...+. .+|.|.+|||++++||++.+||+||++||||+.+
T Consensus 2 ~v~~vi~~-~~~vLL~~r~~~~~-~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v 57 (120)
T cd04683 2 AVYVLLRR-DDEVLLQRRANTGY-MDGQWALPAGHLEKGEDAVTAAVREAREEIGVTL 57 (120)
T ss_pred cEEEEEEE-CCEEEEEEccCCCC-CCCeEeCCccccCCCCCHHHHHHHHHHHHHCCcc
Confidence 45656665 47999999876543 3689999999999999999999999999999975
No 26
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.56 E-value=8.6e-15 Score=110.09 Aligned_cols=53 Identities=38% Similarity=0.601 Sum_probs=46.3
Q ss_pred EEEEEEEcCC-ceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 110 GVGAFVMNGK-REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 110 ~v~~~v~~~~-~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
.+++++++.+ +++||+|+.. .+.|+||||+++.||++.+||+||++||||+.+
T Consensus 3 ~~gaii~~~~~~~vLLvr~~~-----~~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v 56 (145)
T cd03672 3 VYGAIILNEDLDKVLLVKGWK-----SKSWSFPKGKINKDEDDHDCAIREVYEETGFDI 56 (145)
T ss_pred eeEEEEEeCCCCEEEEEEecC-----CCCEECCCccCCCCcCHHHHHHHHHHHhhCccc
Confidence 5777888864 6999999863 258999999999999999999999999999875
No 27
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.55 E-value=1e-14 Score=106.40 Aligned_cols=56 Identities=38% Similarity=0.651 Sum_probs=49.4
Q ss_pred ceeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 107 ~~~~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
+.+++++++++.++++||++|.. .+.|.+|||++++||++.+||+||++||||+++
T Consensus 6 ~~~~~~~~v~~~~~~vLL~~r~~-----~~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~ 61 (132)
T cd04677 6 ILVGAGVILLNEQGEVLLQKRSD-----TGDWGLPGGAMELGESLEETARRELKEETGLEV 61 (132)
T ss_pred cccceEEEEEeCCCCEEEEEecC-----CCcEECCeeecCCCCCHHHHHHHHHHHHhCCee
Confidence 45678888888889999998863 268999999999999999999999999999875
No 28
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.55 E-value=1e-14 Score=104.72 Aligned_cols=56 Identities=43% Similarity=0.719 Sum_probs=47.8
Q ss_pred eEEEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 109 ~~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
++++++++++ +++||++|.+.+ +.+.|.+|||++++||++++||+||++||||+++
T Consensus 1 ~~v~~ii~~~-~~vLl~~r~~~~--~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~ 56 (122)
T cd04673 1 VAVGAVVFRG-GRVLLVRRANPP--DAGLWSFPGGKVELGETLEQAALRELLEETGLEA 56 (122)
T ss_pred CcEEEEEEEC-CEEEEEEEcCCC--CCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEe
Confidence 3567777775 789999987644 3589999999999999999999999999999874
No 29
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.55 E-value=9.6e-15 Score=106.69 Aligned_cols=58 Identities=28% Similarity=0.370 Sum_probs=51.4
Q ss_pred EEEEEEEcCCceEEEEEeecCCCCCCCeEEe-eeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKF-PTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 110 ~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~l-PgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
++.+++++.++++|+++|...+.+.+|.|.+ |||++++||++.+||+||++||||+.+
T Consensus 2 ~~~v~i~~~~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~ 60 (126)
T cd04697 2 ATYIFVFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDG 60 (126)
T ss_pred eEEEEEEcCCCeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCc
Confidence 5677899999999999988766556799999 689999999999999999999999875
No 30
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.55 E-value=1e-14 Score=106.27 Aligned_cols=57 Identities=33% Similarity=0.510 Sum_probs=49.5
Q ss_pred EEEEEEEcCCceEEEEEeecCCCCCCCeEEee-eEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFP-TGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 110 ~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lP-gG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
.|.+++++++++|||++|.......+|.|.+| ||+++.||++ +||+||++||||+++
T Consensus 2 ~v~v~~~~~~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~ 59 (127)
T cd04693 2 VVHVCIFNSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLEL 59 (127)
T ss_pred eEEEEEEeCCCeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCc
Confidence 46678888889999999876554456899998 8999999999 999999999999975
No 31
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.55 E-value=1.1e-14 Score=104.35 Aligned_cols=53 Identities=34% Similarity=0.558 Sum_probs=47.5
Q ss_pred EEEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 110 ~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
++.+++++.++++||++|+.. +.|.+|||+++.||++++||+||++||||+.+
T Consensus 2 ~~~~~i~~~~~~vLL~~r~~~-----~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~ 54 (120)
T cd04680 2 GARAVVTDADGRVLLVRHTYG-----PGWYLPGGGLERGETFAEAARRELLEELGIRL 54 (120)
T ss_pred ceEEEEECCCCeEEEEEECCC-----CcEeCCCCcCCCCCCHHHHHHHHHHHHHCCcc
Confidence 577888998899999998642 48999999999999999999999999999975
No 32
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.53 E-value=2.6e-14 Score=104.26 Aligned_cols=55 Identities=24% Similarity=0.401 Sum_probs=47.0
Q ss_pred eEEEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 109 ~~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
.+++++|++ ++++|+++|.... .+.|.+|||+++.||++++||+||+.||||+.+
T Consensus 2 ~~a~~iv~~-~~~vLl~~r~~~~---~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v 56 (128)
T cd04687 2 NSAKAVIIK-NDKILLIKHHDDG---GVWYILPGGGQEPGETLEDAAHRECKEEIGIDV 56 (128)
T ss_pred cEEEEEEEE-CCEEEEEEEEcCC---CCeEECCCcccCCCCCHHHHHHHHHHHHHCCcc
Confidence 467777776 5799999886432 478999999999999999999999999999975
No 33
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.52 E-value=1.4e-14 Score=105.13 Aligned_cols=54 Identities=39% Similarity=0.663 Sum_probs=47.0
Q ss_pred eEEEEEEEcCC---ceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 109 VGVGAFVMNGK---REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 109 ~~v~~~v~~~~---~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
.++++++++.+ ++|||++|+.. +.|.||||++++||++.+||.||++||||+++
T Consensus 2 ~~a~~ii~~~~~~~~~vLl~~~~~~-----~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~ 58 (131)
T cd03673 2 LAAGGVVFRGSDGGIEVLLIHRPRG-----DDWSLPKGKLEPGETPPEAAVREVEEETGIRA 58 (131)
T ss_pred eeEEEEEEEccCCCeEEEEEEcCCC-----CcccCCCCccCCCCCHHHHHHHHHhhhhCCce
Confidence 36777888764 89999998742 68999999999999999999999999999875
No 34
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.52 E-value=3e-14 Score=102.10 Aligned_cols=52 Identities=27% Similarity=0.517 Sum_probs=45.4
Q ss_pred EEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 111 v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
+++++++.++++||++|+. .+.|.+|||++++||++++||+||++||||+++
T Consensus 3 ~~~~v~~~~~~vLl~~r~~-----~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~ 54 (118)
T cd04690 3 AAALILVRDGRVLLVRKRG-----TDVFYLPGGKIEAGETPLQALIRELSEELGLDL 54 (118)
T ss_pred EEEEEEecCCeEEEEEECC-----CCcEECCCCccCCCCCHHHHHHHHHHHHHCCcc
Confidence 5566777778999998863 478999999999999999999999999999864
No 35
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.52 E-value=4.3e-14 Score=107.39 Aligned_cols=57 Identities=30% Similarity=0.433 Sum_probs=51.4
Q ss_pred ceeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 107 ~~~~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
++.+++++|++.++++||++|... ++.|.+|||++++||++.+||.||++||||+.+
T Consensus 7 ~~~~v~~~i~~~~g~vLL~~r~~~----~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~ 63 (156)
T PRK00714 7 YRPNVGIILLNRQGQVFWGRRIGQ----GHSWQFPQGGIDPGETPEQAMYRELYEEVGLRP 63 (156)
T ss_pred CCCeEEEEEEecCCEEEEEEEcCC----CCeEECCcccCCCCcCHHHHHHHHHHHHhCCCc
Confidence 566899999999999999998743 378999999999999999999999999999975
No 36
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.51 E-value=3.6e-14 Score=104.33 Aligned_cols=54 Identities=37% Similarity=0.596 Sum_probs=46.0
Q ss_pred EEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 111 v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
+.+++.++ +++||++|..++ ..+.|.+|||+++.||++.+||+||++||||+++
T Consensus 4 ~~~~i~~~-~~vLL~~r~~~~--~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~ 57 (137)
T cd03427 4 TLCFIKDP-DKVLLLNRKKGP--GWGGWNGPGGKVEPGETPEECAIRELKEETGLTI 57 (137)
T ss_pred EEEEEEEC-CEEEEEEecCCC--CCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEe
Confidence 33455554 899999998765 4689999999999999999999999999999875
No 37
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.51 E-value=4.4e-14 Score=101.78 Aligned_cols=54 Identities=39% Similarity=0.718 Sum_probs=48.3
Q ss_pred eEEEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 109 ~~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
.++.+++++.++++||++|.. .+.|.+|||+++.||++++||+||++||||+++
T Consensus 3 ~~v~~ii~~~~~~vLl~~r~~-----~~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~ 56 (129)
T cd04676 3 PGVTAVVRDDEGRVLLIRRSD-----NGLWALPGGAVEPGESPADTAVREVREETGLDV 56 (129)
T ss_pred ceEEEEEECCCCeEEEEEecC-----CCcEECCeeccCCCCCHHHHHHHHHHHHhCcee
Confidence 467788888889999999874 278999999999999999999999999999865
No 38
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.51 E-value=4.6e-14 Score=102.40 Aligned_cols=54 Identities=37% Similarity=0.654 Sum_probs=47.9
Q ss_pred eeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 108 ~~~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
+++|.++|+++ +++||++++. .+.|.+|||++++||++.+||+||++||||+.+
T Consensus 2 ~~~v~~~i~~~-~~vLL~~~~~-----~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~ 55 (123)
T cd04672 2 KVDVRAAIFKD-GKILLVREKS-----DGLWSLPGGWADVGLSPAENVVKEVKEETGLDV 55 (123)
T ss_pred cceEEEEEEEC-CEEEEEEEcC-----CCcEeCCccccCCCCCHHHHHHHHHHHHhCCee
Confidence 46788888886 7999998864 478999999999999999999999999999864
No 39
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.50 E-value=4.1e-14 Score=107.43 Aligned_cols=58 Identities=31% Similarity=0.404 Sum_probs=48.2
Q ss_pred EEEEEEEcCC--ceEEEEEeecCCCCCCCeEEeeeEecCCC-CCHHHHHHHHHHHhhCccc
Q 030954 110 GVGAFVMNGK--REVLVVQENSGRFRGTGIWKFPTGVVDEG-EDICVAAVREVKEETSVSI 167 (168)
Q Consensus 110 ~v~~~v~~~~--~~vLlv~r~~~~~~~~g~w~lPgG~ve~g-E~~~eaa~REl~EEtGl~~ 167 (168)
+|.+++.+.+ +++||+||.......+|.|++|||++++| |++.+||+||++||||+++
T Consensus 4 av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~ 64 (157)
T cd03426 4 AVLVLLVEREGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPP 64 (157)
T ss_pred EEEEEEEeCCCceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCc
Confidence 4555566544 69999999876543579999999999999 9999999999999999975
No 40
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.50 E-value=6.4e-14 Score=105.22 Aligned_cols=59 Identities=29% Similarity=0.512 Sum_probs=51.9
Q ss_pred eEEEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 109 ~~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
+++++++++.++++||++|...+...+|.|.+|||++++||++.+||+||++||||+.+
T Consensus 2 ~~v~viv~~~~~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~ 60 (143)
T cd04694 2 VGVAVLLQSSDQKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTL 60 (143)
T ss_pred cEEEEEEEcCCCEEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCc
Confidence 46777888999999999998655335799999999999999999999999999999975
No 41
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.50 E-value=4.5e-14 Score=105.36 Aligned_cols=58 Identities=19% Similarity=0.410 Sum_probs=50.1
Q ss_pred EEEEEEEcCC---ceEEEEEeecCCCCCCCeEEe-eeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 110 GVGAFVMNGK---REVLVVQENSGRFRGTGIWKF-PTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 110 ~v~~~v~~~~---~~vLlv~r~~~~~~~~g~w~l-PgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
+|.++|++.+ +++|+++|.......+|.|++ |||++++||++++||+||++||||+.+
T Consensus 4 ~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~ 65 (144)
T cd04692 4 TFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDV 65 (144)
T ss_pred EEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCC
Confidence 5677888876 899999987755456799999 599999999999999999999999964
No 42
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.50 E-value=4.6e-14 Score=102.97 Aligned_cols=55 Identities=31% Similarity=0.410 Sum_probs=48.7
Q ss_pred EEEEEEEcC--CceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 110 GVGAFVMNG--KREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 110 ~v~~~v~~~--~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
.|.+++++. ++++||++|... .++.|.+|||+++.||++.+||+||++||||+.+
T Consensus 3 ~~~v~~~~~~~~~~vLL~~r~~~---~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~ 59 (129)
T cd04664 3 SVLVVPYRLTGEGRVLLLRRSDK---YAGFWQSVTGGIEDGESPAEAARREVAEETGLDP 59 (129)
T ss_pred EEEEEEEEeCCCCEEEEEEeCCC---CCCcccccCcccCCCCCHHHHHHHHHHHHHCCCh
Confidence 466777877 899999999865 3689999999999999999999999999999974
No 43
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.50 E-value=3.3e-14 Score=104.77 Aligned_cols=55 Identities=29% Similarity=0.509 Sum_probs=47.5
Q ss_pred EEEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 110 ~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
+|.+.+++.++++||++|+..+ .+.|.+|||+++.||++++||+||++||||+++
T Consensus 2 ~v~i~l~~~~~~vLL~~r~~~~---~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~ 56 (131)
T cd03429 2 AVIVLVIDGGDRILLARQPRFP---PGMYSLLAGFVEPGESLEEAVRREVKEEVGIRV 56 (131)
T ss_pred eEEEEEEeCCCEEEEEEecCCC---CCcCcCCcccccCCCCHHHHHhhhhhhccCcee
Confidence 4556677777899999987543 589999999999999999999999999999875
No 44
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.49 E-value=5.6e-14 Score=107.41 Aligned_cols=60 Identities=22% Similarity=0.361 Sum_probs=52.7
Q ss_pred eeEEEEEEEcCCceEEEEEeecCCCCCCCeEEee-eEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFP-TGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 108 ~~~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lP-gG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
..+|+++++++++++||++|.......+|.|.+| ||++++||++++||+||++||||+.+
T Consensus 30 ~~~v~v~i~~~~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~ 90 (165)
T cd02885 30 HRAFSVFLFNSKGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITG 90 (165)
T ss_pred eeEEEEEEEcCCCcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCc
Confidence 4567778899999999999987654567999997 89999999999999999999999975
No 45
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.49 E-value=9e-14 Score=101.97 Aligned_cols=57 Identities=28% Similarity=0.506 Sum_probs=47.1
Q ss_pred EEEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 110 ~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
.+.+++++.++++||++|.....+ .|.|.||||++++||++.+|++||++||||+++
T Consensus 5 ~~~~~ii~~~~~vLL~~R~~~~~~-~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~ 61 (135)
T PRK10546 5 DVVAAIIERDGKILLAQRPAHSDQ-AGLWEFAGGKVEPGESQPQALIRELREELGIEA 61 (135)
T ss_pred EEEEEEEecCCEEEEEEccCCCCC-CCcEECCcccCCCCCCHHHHHHHHHHHHHCCcc
Confidence 344445566789999999765433 589999999999999999999999999999875
No 46
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.49 E-value=1.3e-13 Score=99.65 Aligned_cols=57 Identities=25% Similarity=0.525 Sum_probs=48.6
Q ss_pred EEEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 110 ~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
.++++|.+.++++||+||...+.+ .|.|+||||++++||++.+||.||++||||+++
T Consensus 6 ~~~~ii~~~~~~vll~rR~~~~~~-~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~ 62 (129)
T PRK10776 6 IAVGIIRNPNNEIFITRRAADAHM-AGKWEFPGGKIEAGETPEQALIRELQEEVGITV 62 (129)
T ss_pred EEEEEEECCCCEEEEEEecCCCCC-CCeEECCceecCCCCCHHHHHHHHHHHHHCCce
Confidence 444566777789999999876543 599999999999999999999999999999874
No 47
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.49 E-value=6.5e-14 Score=102.70 Aligned_cols=54 Identities=35% Similarity=0.500 Sum_probs=45.5
Q ss_pred EEEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 110 ~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
+|++++. .++++||++|... +.+.|.+|||++++||++.+||.||++||||+++
T Consensus 2 ~v~~ii~-~~~~vLlv~r~~~---~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~ 55 (134)
T cd03675 2 TVAAVVE-RDGRFLLVEEETD---GGLVFNQPAGHLEPGESLIEAAVRETLEETGWHV 55 (134)
T ss_pred eEEEEEE-ECCEEEEEEEccC---CCceEECCCccCCCCCCHHHHHHHHHHHHHCccc
Confidence 4555544 4579999998765 3589999999999999999999999999999875
No 48
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.48 E-value=8.3e-14 Score=101.11 Aligned_cols=53 Identities=28% Similarity=0.355 Sum_probs=45.2
Q ss_pred eEEEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 109 ~~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
+.|.++|++ ++++||+++.. .+.|.+|||+++.||++.+||+||++||||+++
T Consensus 2 ~~~~~vi~~-~~~vLlv~~~~-----~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~ 54 (125)
T cd04689 2 LRARAIVRA-GNKVLLARVIG-----QPHYFLPGGHVEPGETAENALRRELQEELGVAV 54 (125)
T ss_pred eEEEEEEEe-CCEEEEEEecC-----CCCEECCCCcCCCCCCHHHHHHHHHHHHhCcee
Confidence 456667764 67999998863 368999999999999999999999999999875
No 49
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.47 E-value=1e-13 Score=102.00 Aligned_cols=52 Identities=35% Similarity=0.608 Sum_probs=44.8
Q ss_pred EEEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 110 ~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
+|+++|+++ ++|||+++.. .+.|.||||++++||++.+||+||++||||+.+
T Consensus 2 ~~~~ii~~~-~~vLLv~~~~-----~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~ 53 (131)
T cd04686 2 AVRAIILQG-DKILLLYTKR-----YGDYKFPGGGVEKGEDHIEGLIRELQEETGATN 53 (131)
T ss_pred cEEEEEEEC-CEEEEEEEcC-----CCcEECccccCCCCCCHHHHHHHHHHHHHCCcc
Confidence 466677775 7999999863 257999999999999999999999999999864
No 50
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.46 E-value=1.5e-13 Score=106.84 Aligned_cols=59 Identities=25% Similarity=0.293 Sum_probs=49.4
Q ss_pred eEEEEEEEcCCceEEEEEeecCCCCCCCeE-EeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIW-KFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 109 ~~v~~~v~~~~~~vLlv~r~~~~~~~~g~w-~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
.++.++|+++++++||++|.....+.+|.| .+|||++++||++.+||+||++||||+.+
T Consensus 38 ~~~~v~v~~~~g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~ 97 (180)
T PRK15393 38 RATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAG 97 (180)
T ss_pred EEEEEEEECCCCeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCC
Confidence 356778889889999988876554445777 57999999999999999999999999964
No 51
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.46 E-value=1.6e-13 Score=99.70 Aligned_cols=52 Identities=27% Similarity=0.429 Sum_probs=44.1
Q ss_pred EEEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 110 ~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
.|.++++++ ++|||+++.. .+.|.+|||+++.||++.+||+||++||||+++
T Consensus 3 ~v~~vi~~~-~~vLl~~~~~-----~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~ 54 (126)
T cd04688 3 RAAAIIIHN-GKLLVQKNPD-----ETFYRPPGGGIEFGESSEEALIREFKEELGLKI 54 (126)
T ss_pred EEEEEEEEC-CEEEEEEeCC-----CCeEECCCccccCCCCHHHHHHHHHHHHhCCce
Confidence 455566664 4999998764 378999999999999999999999999999875
No 52
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.46 E-value=3.1e-13 Score=97.86 Aligned_cols=58 Identities=24% Similarity=0.386 Sum_probs=49.3
Q ss_pred eEEEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 109 ~~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
..+++++++.++++|+++|.....+ .|.|+||||.++.||++.++++||+.||||+++
T Consensus 5 ~~~~~ii~~~~~~vLl~~R~~~~~~-~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~ 62 (128)
T TIGR00586 5 QIAVGIIRNENGEIIITRRADGHMF-AKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQ 62 (128)
T ss_pred EEEEEEEECCCCEEEEEEEeCCCCC-CCeEECCCcccCCCCCHHHHHHHHHHHHHCCcc
Confidence 3455566677789999999876554 499999999999999999999999999999864
No 53
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.45 E-value=2e-13 Score=115.72 Aligned_cols=58 Identities=33% Similarity=0.632 Sum_probs=49.8
Q ss_pred ceeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 107 ~~~~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
..++++++|++ +++|||++|...+ +.|.|.+|||++++||++++||+||++||||+++
T Consensus 202 ~~vtv~avv~~-~g~VLLvrR~~~p--~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v 259 (340)
T PRK05379 202 TFVTVDAVVVQ-SGHVLLVRRRAEP--GKGLWALPGGFLEQDETLLDACLRELREETGLKL 259 (340)
T ss_pred cceEEEEEEEE-CCEEEEEEecCCC--CCCeEECCcccCCCCCCHHHHHHHHHHHHHCCcc
Confidence 34677777765 5799999998765 4689999999999999999999999999999974
No 54
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.45 E-value=2e-13 Score=106.24 Aligned_cols=60 Identities=22% Similarity=0.436 Sum_probs=51.2
Q ss_pred eeEEEEEEEcCCceEEEEEeecCCCCCCCeEEee-eEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFP-TGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 108 ~~~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lP-gG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
..++++++++.+++|||++|.......+|.|.+| ||++++||++++||+||+.||||+++
T Consensus 34 h~av~v~i~~~~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~ 94 (184)
T PRK03759 34 HLAFSCYLFDADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEI 94 (184)
T ss_pred eeEEEEEEEcCCCeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCc
Confidence 3467788899899999999876544446889987 89999999999999999999999975
No 55
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.44 E-value=1.3e-13 Score=100.34 Aligned_cols=52 Identities=40% Similarity=0.670 Sum_probs=44.5
Q ss_pred EEEEEEEcCCc---eEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 110 GVGAFVMNGKR---EVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 110 ~v~~~v~~~~~---~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
++++++++.++ ++||++|+. +.|.+|||++++||++.+||+||++||||+++
T Consensus 4 ~~g~vi~~~~~~~~~vLl~~~~~------~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~ 58 (130)
T cd03428 4 SAGAIIYRRLNNEIEYLLLQASY------GHWDFPKGHVEPGEDDLEAALRETEEETGITA 58 (130)
T ss_pred EEEEEEEEecCCCceEEEEEccC------CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCCh
Confidence 56677776433 799998873 68999999999999999999999999999975
No 56
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.44 E-value=2.4e-13 Score=99.77 Aligned_cols=48 Identities=35% Similarity=0.553 Sum_probs=42.8
Q ss_pred cCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 117 NGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 117 ~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
+.++++||++|... ..|.|.+|||++++||++.+||+||++||||+++
T Consensus 11 ~~~~~vLl~~r~~~---~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~ 58 (131)
T cd04695 11 DKETKVLLLKRVKT---LGGFWCHVAGGVEAGETAWQAALRELKEETGISL 58 (131)
T ss_pred CCCCEEEEEEecCC---CCCcEECCcccccCCCCHHHHHHHHHHHHhCCCc
Confidence 46789999999865 2589999999999999999999999999999975
No 57
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.43 E-value=4.6e-13 Score=104.34 Aligned_cols=57 Identities=28% Similarity=0.356 Sum_probs=48.3
Q ss_pred EEEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 110 ~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
+|+++.+++++++||+++.+.+ .+...|+||||.+|+||++++||+||++||||+++
T Consensus 49 ~v~v~~~~~~~~vlLvrq~r~~-~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~ 105 (185)
T PRK11762 49 AVMIVPILDDDTLLLIREYAAG-TERYELGFPKGLIDPGETPLEAANRELKEEVGFGA 105 (185)
T ss_pred EEEEEEEeCCCEEEEEEeecCC-CCCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCC
Confidence 4666667778899999886554 35688999999999999999999999999999875
No 58
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.43 E-value=2.9e-13 Score=98.91 Aligned_cols=52 Identities=37% Similarity=0.464 Sum_probs=43.6
Q ss_pred EEEEEEcC---CceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 111 VGAFVMNG---KREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 111 v~~~v~~~---~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
+++++++. ..++||+++.. .+.|.+|||+++.||++.+||+||++||||+++
T Consensus 3 ~g~v~~~~~~~~~~vLLv~~~~-----~~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~ 57 (122)
T cd04666 3 AGAIPYRETGGEVEVLLVTSRR-----TGRWIVPKGGPEKDESPAEAAAREAWEEAGVRG 57 (122)
T ss_pred EEEEEEEEcCCceEEEEEEecC-----CCeEECCCCCcCCCCCHHHHHHHHHHHHhCCcc
Confidence 55566653 36899998863 278999999999999999999999999999864
No 59
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.43 E-value=2.8e-13 Score=96.74 Aligned_cols=48 Identities=31% Similarity=0.502 Sum_probs=41.8
Q ss_pred EEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 114 FVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 114 ~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
+|...++++||++|. .+.|.+|||++++||++.+||.||++||||+++
T Consensus 5 ~i~~~~~~vLlv~r~------~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~ 52 (112)
T cd04667 5 VICRRGGRVLLVRKS------GSRWALPGGKIEPGETPLQAARRELQEETGLQG 52 (112)
T ss_pred EEEecCCEEEEEEcC------CCcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcc
Confidence 344456899999986 278999999999999999999999999999874
No 60
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.42 E-value=5.2e-13 Score=99.00 Aligned_cols=58 Identities=28% Similarity=0.464 Sum_probs=50.2
Q ss_pred EEEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 110 ~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
++.+++++.+++|||+++........+.|.+|||+++.||++.+||.||++||||+.+
T Consensus 2 ~~~~~i~~~~g~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~ 59 (133)
T cd04685 2 AARVVLLDPDDRVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITV 59 (133)
T ss_pred eEEEEEEcCCCeEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCcc
Confidence 5778999999999999887543223579999999999999999999999999999875
No 61
>PLN03143 nudix hydrolase; Provisional
Probab=99.40 E-value=3e-12 Score=106.28 Aligned_cols=159 Identities=19% Similarity=0.248 Sum_probs=92.7
Q ss_pred cccCCcccccceeccccCCCCEEEecCCCCCHHHHHHHHHHHH-HHHHHcCcceEEEeccccccccchhhhhccceeeec
Q 030954 5 VNSSSATVNKFLNGINDNYGGVVVQMNEPMDPQLFASLLKSSI-SHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFHHA 83 (168)
Q Consensus 5 ~~~~~~~~~~~~~~~~d~~~gv~v~~~~~~~~~~f~~~l~~~l-~~w~~~~~~~vw~~~p~~~~~l~~~~~~~gf~~~~~ 83 (168)
++++++.....|.-....-..|.|......+.++|...+...+ ..|.+.-....=+. ......+-.+.++.=-.| ..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~vd~f-g~ 100 (291)
T PLN03143 23 SSSSSSPLTHSITLPGQPGQPVLVVAAPGISSSDFRKAIDSSLFRQWLKNLQSESGIL-AYGSMSLKQVLIQGVDMF-GK 100 (291)
T ss_pred cCCCCCCceeEEEccCCCCCceeEecCCCCCHHHHHhHhcChHHHHHHHHhhhccccc-cCCCceeEEEEEEEEecc-cC
Confidence 4445556677776665556788888866678889987777665 88866643321100 011122222222211111 22
Q ss_pred CCcEEEEEE---eecCCCCCCCCCCc-ceeEEEEEEE-cCCce--EEEEEeecCCCCCCCeEEeeeEecCC-CCCHHHHH
Q 030954 84 EPNYLMLVY---WIPGGANTLPANAS-HRVGVGAFVM-NGKRE--VLVVQENSGRFRGTGIWKFPTGVVDE-GEDICVAA 155 (168)
Q Consensus 84 ~~~~~~l~~---~l~~~~~~~~~~~~-~~~~v~~~v~-~~~~~--vLlv~r~~~~~~~~g~w~lPgG~ve~-gE~~~eaa 155 (168)
+-.|+.+.. .++++. ..+.... +..+|+++++ +.+++ ++|+++.+.+. +...|+||||.+|+ +|++.+||
T Consensus 101 ~~gflkv~~d~~~l~~G~-~~~~~v~~rg~aVaVL~~l~~~ge~~VlLVrQ~R~pv-g~~~lE~PAG~lD~~~edp~~aA 178 (291)
T PLN03143 101 RIGFLKFKADIIDKETGQ-KVPGIVFARGPAVAVLILLESEGETYAVLTEQVRVPV-GKFVLELPAGMLDDDKGDFVGTA 178 (291)
T ss_pred ceeEEEEEEEEEECCCCC-EeeEEEEEcCCeEEEEEEEeCCCCEEEEEEEeEecCC-CcEEEEecccccCCCCCCHHHHH
Confidence 333433322 134443 3343322 2235555544 44444 77877765443 45689999999997 58999999
Q ss_pred HHHHHHhhCccc
Q 030954 156 VREVKEETSVSI 167 (168)
Q Consensus 156 ~REl~EEtGl~~ 167 (168)
+||++||||+.+
T Consensus 179 ~REL~EETG~~~ 190 (291)
T PLN03143 179 VREVEEETGIKL 190 (291)
T ss_pred HHHHHHHHCCcc
Confidence 999999999963
No 62
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.40 E-value=4e-13 Score=99.16 Aligned_cols=47 Identities=32% Similarity=0.512 Sum_probs=40.8
Q ss_pred CCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 118 GKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 118 ~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
++.++||++++.+. .|.|.||||++++|||+.+||+||++||||+.+
T Consensus 11 ~~~~~Llvk~~~~~---~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v 57 (132)
T cd04661 11 DDTLVLLVQQKVGS---QNHWILPQGKREEGETLRQTAERTLKELCGNNL 57 (132)
T ss_pred cCcEEEEEEeecCC---CCeeECCcccccCCCCHHHHHHHHHHHhhCCCc
Confidence 35688999987532 489999999999999999999999999999964
No 63
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.40 E-value=4.7e-13 Score=109.50 Aligned_cols=66 Identities=21% Similarity=0.276 Sum_probs=52.2
Q ss_pred CCCCCCCCcceeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 98 ANTLPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 98 ~~~~~~~~~~~~~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
.+....|+.+..+|.++|. .++++||+++.+.+ .|.|.+|||++++||++++||+||++||||+++
T Consensus 122 ~c~~~~yp~~~paViv~V~-~~~~iLL~rr~~~~---~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v 187 (256)
T PRK00241 122 HCRERYYPRIAPCIIVAVR-RGDEILLARHPRHR---NGVYTVLAGFVEVGETLEQCVAREVMEESGIKV 187 (256)
T ss_pred CCCCEECCCCCCEEEEEEE-eCCEEEEEEccCCC---CCcEeCcccCCCCCCCHHHHhhhhhhhccCcee
Confidence 3445555555556655544 45899999987654 589999999999999999999999999999975
No 64
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.39 E-value=1.1e-12 Score=93.53 Aligned_cols=56 Identities=34% Similarity=0.681 Sum_probs=47.9
Q ss_pred EEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 111 v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
+.++++++++++||++|+..+. .+|.|.||||+++.+|++.++|.||+.||||+++
T Consensus 4 ~~~~i~~~~~~~Ll~~r~~~~~-~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~ 59 (124)
T cd03425 4 VAAIIIDDDGRILIAQRPAGKH-LGGLWEFPGGKVEPGETPEQALVRELREELGIEV 59 (124)
T ss_pred EEEEEECCCCEEEEEEeCCCCC-CCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEE
Confidence 4445667779999999987653 4699999999999999999999999999999864
No 65
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.38 E-value=1.6e-12 Score=94.83 Aligned_cols=55 Identities=31% Similarity=0.418 Sum_probs=42.7
Q ss_pred EEEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 110 ~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
.+++++...+ .+||++|...+ +.+.|.||||++++||++.+||.||+.||||+++
T Consensus 6 ~av~vl~~~~-~~lL~~r~~~~--~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~ 60 (118)
T cd04674 6 VVVALLPVDD-GLLVIRRGIEP--GRGKLALPGGFIELGETWQDAVARELLEETGVAV 60 (118)
T ss_pred EEEEEEEECC-CEEEEEeecCC--CCCeEECCceecCCCCCHHHHHHHHHHHHHCCcc
Confidence 3434444444 46666666544 3689999999999999999999999999999875
No 66
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.38 E-value=1e-12 Score=100.00 Aligned_cols=57 Identities=21% Similarity=0.388 Sum_probs=49.4
Q ss_pred eEEEEEEEcCCceEEEEEeecCCCCCCCeEEee-eEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFP-TGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 109 ~~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lP-gG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
.+++++|++.++++||+||.......+|.|.+| ||+++.|| .+||+||++||||+++
T Consensus 28 ~~v~v~v~~~~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~ 85 (158)
T TIGR02150 28 RAFSVFLFNEEGQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPA 85 (158)
T ss_pred EEEEEEEEcCCCeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCc
Confidence 367788899999999999987655568999997 79999999 4999999999999975
No 67
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.36 E-value=2.1e-12 Score=95.10 Aligned_cols=58 Identities=36% Similarity=0.587 Sum_probs=44.5
Q ss_pred EEEEEEEc---CCceEEEEEeecCC--CCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 110 GVGAFVMN---GKREVLVVQENSGR--FRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 110 ~v~~~v~~---~~~~vLlv~r~~~~--~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
++++++++ ...+|||+++.... ....+.|++|||+++.||++.+||+||++||||+++
T Consensus 2 ~~g~v~~~~~~~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~ 64 (126)
T cd04662 2 SAGILLYRFRDGRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCV 64 (126)
T ss_pred eEEEEEEEEcCCcEEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcc
Confidence 35556664 23479999864320 123589999999999999999999999999999975
No 68
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.36 E-value=1.1e-12 Score=102.51 Aligned_cols=61 Identities=18% Similarity=0.237 Sum_probs=49.5
Q ss_pred ceeEEEEEEEcC-CceEEEEEeecCCCC----CCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 107 HRVGVGAFVMNG-KREVLVVQENSGRFR----GTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 107 ~~~~v~~~v~~~-~~~vLlv~r~~~~~~----~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
+..+|++++++. ++++||+++.+.+.. ++..|++|||++++||++++||+||++||||+.+
T Consensus 43 ~~~~v~vl~~~~~~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~ 108 (185)
T TIGR00052 43 RGNAAAVLLYDPKKDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQV 108 (185)
T ss_pred cCCeEEEEEEECCCCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHcccccccee
Confidence 344677777764 578999987655431 4578999999999999999999999999999975
No 69
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.35 E-value=2.3e-12 Score=90.93 Aligned_cols=55 Identities=38% Similarity=0.732 Sum_probs=48.5
Q ss_pred EEEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 110 ~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
++++++++.++++||++|... ..|.|.+|||+++.||++.++|+||+.||+|+.+
T Consensus 2 ~~~~i~~~~~~~ill~kr~~~---~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~ 56 (123)
T cd02883 2 AVGAVILDEDGRVLLVRRADS---PGGLWELPGGGVEPGETLEEAAIREVREETGLDV 56 (123)
T ss_pred ceEEEEECCCCCEEEEEEcCC---CCCeEeCCcccccCCCCHHHHHHHHHHHhhCccc
Confidence 466777888789999999865 2589999999999999999999999999999864
No 70
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.34 E-value=8.8e-12 Score=95.03 Aligned_cols=53 Identities=30% Similarity=0.312 Sum_probs=42.7
Q ss_pred eeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 108 ~~~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
...|++++..+ +++||+++.. ..|++|||++++||++.+||+||++||||+.+
T Consensus 24 ~~~V~ii~~~~-~~~LL~~~~~------~~~elPgG~vE~gEt~~eaA~REl~EETG~~~ 76 (156)
T TIGR02705 24 PNHVLVIPRYK-DQWLLTEHKR------RGLEFPGGKVEPGETSKEAAIREVMEETGAIV 76 (156)
T ss_pred CCEEEEEEEEC-CEEEEEEEcC------CcEECCceecCCCCCHHHHHHHHHHHHhCcEe
Confidence 34555555554 4888887752 35999999999999999999999999999875
No 71
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=99.34 E-value=4.2e-12 Score=99.68 Aligned_cols=58 Identities=22% Similarity=0.326 Sum_probs=45.9
Q ss_pred EEEEEEE--cCCceEEEEEeecCCCCCCCeEEeeeEecCCC-CCHHHHHHHHHHHhhCccc
Q 030954 110 GVGAFVM--NGKREVLVVQENSGRFRGTGIWKFPTGVVDEG-EDICVAAVREVKEETSVSI 167 (168)
Q Consensus 110 ~v~~~v~--~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~g-E~~~eaa~REl~EEtGl~~ 167 (168)
+++++.+ +.++.+|+++|........|.|+||||++|++ |++++||+||++||||+++
T Consensus 32 aavvl~l~~~~~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~ 92 (190)
T PRK10707 32 AAVLIPIVRRPQPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPP 92 (190)
T ss_pred eEEEEEEEECCCCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCc
Confidence 4444444 34568999998766544578999999999975 6899999999999999975
No 72
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.31 E-value=5.7e-12 Score=91.84 Aligned_cols=50 Identities=38% Similarity=0.537 Sum_probs=42.0
Q ss_pred EEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 111 v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
|.+++++ ++++||++++ .+.|.+|||+++.||++++||+||++||||+.+
T Consensus 3 v~vi~~~-~~~vLl~~~~------~~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~ 52 (118)
T cd04665 3 VLVICFY-DDGLLLVRHK------DRGWEFPGGHVEPGETIEEAARREVWEETGAEL 52 (118)
T ss_pred EEEEEEE-CCEEEEEEeC------CCEEECCccccCCCCCHHHHHHHHHHHHHCCcc
Confidence 4445554 4789999875 257999999999999999999999999999875
No 73
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.31 E-value=8.5e-12 Score=96.53 Aligned_cols=55 Identities=16% Similarity=0.276 Sum_probs=48.6
Q ss_pred EEEEcCC--ceEEEEEeecCCCCCCCeE-EeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 113 AFVMNGK--REVLVVQENSGRFRGTGIW-KFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 113 ~~v~~~~--~~vLlv~r~~~~~~~~g~w-~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
+++.|.+ +++|+.||...+...+|.| .+|||+++.||++.+||+||++||||+++
T Consensus 39 ~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~ 96 (180)
T cd03676 39 GYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPE 96 (180)
T ss_pred EEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCH
Confidence 4566765 8999999998877779999 59999999999999999999999999874
No 74
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=99.25 E-value=8.8e-12 Score=103.21 Aligned_cols=60 Identities=22% Similarity=0.340 Sum_probs=47.1
Q ss_pred ceeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCcccC
Q 030954 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSIN 168 (168)
Q Consensus 107 ~~~~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~~ 168 (168)
....|..++++.+++.+|..|..++ .+|+|..++|++|+||+++|||+||++||||++++
T Consensus 186 ~dPvVIm~li~~d~~~~LL~R~~r~--~~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~ 245 (345)
T KOG3084|consen 186 TDPVVIMLLIDHDGKHALLGRQKRY--PPGLWTCLAGFLEPGESIEEAVRRETWEETGIEVE 245 (345)
T ss_pred CCCeEEEEEEcCCCCEeeeecccCC--CCchhhhhhccCCccccHHHHHHHHHHHHhCceee
Confidence 3345666777776655555444443 36899999999999999999999999999999874
No 75
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.25 E-value=2.1e-11 Score=96.57 Aligned_cols=60 Identities=18% Similarity=0.252 Sum_probs=47.6
Q ss_pred eeEEEEEEEcC-CceEEEEEeecCCCC----CCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 108 RVGVGAFVMNG-KREVLVVQENSGRFR----GTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 108 ~~~v~~~v~~~-~~~vLlv~r~~~~~~----~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
.-+|+++.+++ +++|+|++..+.+.. ++-.|++|+|.+|+||++++||+||+.||||+.+
T Consensus 49 ~~~V~il~~~~~~~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a 113 (202)
T PRK10729 49 GHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIV 113 (202)
T ss_pred CCeEEEEEEECCCCEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCcee
Confidence 34666677775 478888877655431 1357999999999999999999999999999975
No 76
>PRK08999 hypothetical protein; Provisional
Probab=99.21 E-value=4.2e-11 Score=99.81 Aligned_cols=57 Identities=26% Similarity=0.614 Sum_probs=48.3
Q ss_pred EEEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 110 ~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
.+.+++++.++++||++|.....+ .|.|+||||+++.||++.+|+.||++||||+++
T Consensus 7 ~~~~vi~~~~~~vLL~kR~~~~~~-~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~ 63 (312)
T PRK08999 7 VAAGVIRDADGRILLARRPEGKHQ-GGLWEFPGGKVEPGETVEQALARELQEELGIEV 63 (312)
T ss_pred EEEEEEECCCCeEEEEEecCCCCC-CCeEECCccCCCCCCCHHHHHHHHHHHHhCCce
Confidence 445566677789999999765543 599999999999999999999999999999874
No 77
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=99.19 E-value=4.2e-11 Score=88.28 Aligned_cols=51 Identities=27% Similarity=0.380 Sum_probs=39.9
Q ss_pred EEEEEEcCCc--eEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 111 VGAFVMNGKR--EVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 111 v~~~v~~~~~--~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
|.+++.+.++ +||+.+... +.|.+|||.+++||++.+||+||++||||+++
T Consensus 3 ~~~~~~~~~~~~~ll~~r~~~------~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~ 55 (126)
T cd04663 3 CPAVLRRNGEVLELLVFEHPL------AGFQIVKGTVEPGETPEAAALRELQEESGLPS 55 (126)
T ss_pred EEEEEEeCCceEEEEEEEcCC------CcEECCCccCCCCCCHHHHHHHHHHHHHCCee
Confidence 4455555543 566665542 45999999999999999999999999999974
No 78
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=99.16 E-value=6.9e-11 Score=85.00 Aligned_cols=44 Identities=41% Similarity=0.761 Sum_probs=38.9
Q ss_pred ceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHH-HHHHHHHHhhCccc
Q 030954 120 REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICV-AAVREVKEETSVSI 167 (168)
Q Consensus 120 ~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~e-aa~REl~EEtGl~~ 167 (168)
.++|+.+++... +.|.+|||+++.||++.+ ||+||++||||+.+
T Consensus 24 ~~vl~~~~~~~~----~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~ 68 (161)
T COG0494 24 GEVLLAQRRDDG----GLWELPGGKVEPGEELPEEAAARELEEETGLRV 68 (161)
T ss_pred CEEeEEEccccC----CceecCCcccCCCCchHHHHHHHHHHHHhCCee
Confidence 789998887542 589999999999999888 99999999999965
No 79
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=99.16 E-value=1e-10 Score=91.93 Aligned_cols=60 Identities=18% Similarity=0.261 Sum_probs=47.4
Q ss_pred ceeEEEEEEEcC-CceEEEEEeecCCC-----CCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 107 HRVGVGAFVMNG-KREVLVVQENSGRF-----RGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 107 ~~~~v~~~v~~~-~~~vLlv~r~~~~~-----~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
+..+|++++++. +++++|+++.+.+. .+.-.|++|+|.+|+| ++++||+||+.||||+.+
T Consensus 44 ~~~~v~Vl~~~~~~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a 109 (191)
T PRK15009 44 RGNGATILLYNAKKKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEV 109 (191)
T ss_pred ECCEEEEEEEECCCCEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCcc
Confidence 344677777775 67899988866653 1456899999999976 699999999999999975
No 80
>PLN02709 nudix hydrolase
Probab=99.12 E-value=2e-10 Score=92.03 Aligned_cols=48 Identities=27% Similarity=0.329 Sum_probs=42.2
Q ss_pred ceEEEEEeecCCCCCCCeEEeeeEecCCC-CCHHHHHHHHHHHhhCccc
Q 030954 120 REVLVVQENSGRFRGTGIWKFPTGVVDEG-EDICVAAVREVKEETSVSI 167 (168)
Q Consensus 120 ~~vLlv~r~~~~~~~~g~w~lPgG~ve~g-E~~~eaa~REl~EEtGl~~ 167 (168)
.++||.+|......++|.|.||||++|++ +++.+||+||+.||+|+..
T Consensus 51 ~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~ 99 (222)
T PLN02709 51 LRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDP 99 (222)
T ss_pred eEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCc
Confidence 48999999877555689999999999996 5799999999999999964
No 81
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=99.06 E-value=1.6e-10 Score=90.39 Aligned_cols=42 Identities=33% Similarity=0.589 Sum_probs=37.0
Q ss_pred ceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCcc
Q 030954 120 REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVS 166 (168)
Q Consensus 120 ~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~ 166 (168)
.++|+++|+. .|.|.||||++++||++.+||+||+.||||+.
T Consensus 49 l~vLl~~r~~-----~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~ 90 (186)
T cd03670 49 LQFVAIKRPD-----SGEWAIPGGMVDPGEKISATLKREFGEEALNS 90 (186)
T ss_pred eEEEEEEeCC-----CCcCcCCeeeccCCCCHHHHHHHHHHHHHccc
Confidence 4788888853 48999999999999999999999999999753
No 82
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=99.02 E-value=5.3e-10 Score=91.89 Aligned_cols=66 Identities=23% Similarity=0.307 Sum_probs=51.9
Q ss_pred CCCCCCCcceeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCcccC
Q 030954 99 NTLPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSIN 168 (168)
Q Consensus 99 ~~~~~~~~~~~~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~~ 168 (168)
+....|+....+|.+++.+.+. +||.++.+.. +|++.+-+|+||+|||+++|+.||++||+|++++
T Consensus 135 cg~~~fPR~dP~vIv~v~~~~~-ilLa~~~~h~---~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~ 200 (279)
T COG2816 135 CGHEHFPRIDPCVIVAVIRGDE-ILLARHPRHF---PGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVK 200 (279)
T ss_pred CCCccCCCCCCeEEEEEecCCc-eeecCCCCCC---CcceeeeeecccCCccHHHHHHHHHHHhhCeEEe
Confidence 4455555555666666666544 8887777654 6999999999999999999999999999999863
No 83
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=99.01 E-value=6.4e-10 Score=82.91 Aligned_cols=56 Identities=30% Similarity=0.448 Sum_probs=46.6
Q ss_pred ceeEEEEEEEcCCc---eEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCcc
Q 030954 107 HRVGVGAFVMNGKR---EVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVS 166 (168)
Q Consensus 107 ~~~~v~~~v~~~~~---~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~ 166 (168)
.+..++|+++..++ +|||++-.+.+ ..|-+|+|++|++|+..+||.||+.||.|+.
T Consensus 8 ~r~vagCi~~r~~~~~ieVLlvsSs~~~----~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~ 66 (145)
T KOG2839|consen 8 FRLVAGCICYRSDKEKIEVLLVSSSKKP----HRWIVPKGGWEPDESVEEAALRETWEEAGVK 66 (145)
T ss_pred cEEEEEeeeeeecCcceEEEEEecCCCC----CCccCCCCCCCCCCCHHHHHHHHHHHHhCce
Confidence 44567777776433 89999987643 5799999999999999999999999999985
No 84
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=98.93 E-value=2.9e-09 Score=86.74 Aligned_cols=63 Identities=24% Similarity=0.320 Sum_probs=49.5
Q ss_pred CCcceeEEEEEEEcCCceEEEEEeecCCCCCCCeEEee-eEecCCCCC-----------------HHHHHHHHHHHhhCc
Q 030954 104 NASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFP-TGVVDEGED-----------------ICVAAVREVKEETSV 165 (168)
Q Consensus 104 ~~~~~~~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lP-gG~ve~gE~-----------------~~eaa~REl~EEtGl 165 (168)
.-.|+ ++.++|+|.++++||+||...+...+|.|... +|++..||+ ..+||+||+.|||||
T Consensus 53 gl~Hr-a~~v~i~n~~g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI 131 (247)
T PLN02552 53 GLLHR-AFSVFLFNSKYELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGI 131 (247)
T ss_pred CceEE-EEEEEEEcCCCeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhCC
Confidence 33454 68889999999999999998877778999776 355544422 678999999999999
Q ss_pred cc
Q 030954 166 SI 167 (168)
Q Consensus 166 ~~ 167 (168)
.+
T Consensus 132 ~~ 133 (247)
T PLN02552 132 PA 133 (247)
T ss_pred Cc
Confidence 73
No 85
>PLN02791 Nudix hydrolase homolog
Probab=98.90 E-value=2.9e-09 Score=98.22 Aligned_cols=59 Identities=20% Similarity=0.418 Sum_probs=52.9
Q ss_pred eEEEEEEEcC-CceEEEEEeecCCCCCCCeEEe-eeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 109 VGVGAFVMNG-KREVLVVQENSGRFRGTGIWKF-PTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 109 ~~v~~~v~~~-~~~vLlv~r~~~~~~~~g~w~l-PgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
.++.++|++. ++++||+||...+...+|.|.+ |||+++.||+..+||+||+.||+||.+
T Consensus 33 rAvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l 93 (770)
T PLN02791 33 RAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIIL 93 (770)
T ss_pred EEEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCC
Confidence 3678888886 6899999998887778999999 799999999999999999999999964
No 86
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=98.80 E-value=2.1e-08 Score=78.45 Aligned_cols=46 Identities=33% Similarity=0.517 Sum_probs=38.9
Q ss_pred ceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCcc
Q 030954 120 REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVS 166 (168)
Q Consensus 120 ~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~ 166 (168)
..++|++.-+.| .+.-..++|+|.+|.||+++.||+|||+||||+.
T Consensus 88 ~~ivL~kQfRpP-~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~ 133 (225)
T KOG3041|consen 88 PYIVLVKQFRPP-TGKICIELPAGLIDDGEDFEGAAIRELEEETGYK 133 (225)
T ss_pred EEEEEEEeecCC-CCcEEEEcccccccCCCchHHHHHHHHHHHhCcc
Confidence 467777665544 4667899999999999999999999999999985
No 87
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=98.47 E-value=6.2e-07 Score=63.40 Aligned_cols=50 Identities=22% Similarity=0.366 Sum_probs=42.1
Q ss_pred EEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhC
Q 030954 114 FVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETS 164 (168)
Q Consensus 114 ~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtG 164 (168)
+++..++++||.||+....++ |+|+||+|.++.+|+.+++..|++.+|.+
T Consensus 8 ~ii~~~~~~ll~kR~~~gl~~-glwefP~~~~~~~~~~~~~~~~~~~~~~~ 57 (118)
T cd03431 8 VVIRNDGRVLLEKRPEKGLLA-GLWEFPSVEWEEEADGEEALLSALKKALR 57 (118)
T ss_pred EEEecCCeEEEEECCCCCCCC-cceeCCCccccCCcCHHHHHHHHHHHHhC
Confidence 444557899999998776664 99999999999999999999999988864
No 88
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=98.26 E-value=2.6e-06 Score=68.45 Aligned_cols=58 Identities=22% Similarity=0.196 Sum_probs=45.6
Q ss_pred EEEEEEEcC---CceEEEEEeecCCCCCCCeEEeeeEecCCC-CCHHHHHHHHHHHhhCccc
Q 030954 110 GVGAFVMNG---KREVLVVQENSGRFRGTGIWKFPTGVVDEG-EDICVAAVREVKEETSVSI 167 (168)
Q Consensus 110 ~v~~~v~~~---~~~vLlv~r~~~~~~~~g~w~lPgG~ve~g-E~~~eaa~REl~EEtGl~~ 167 (168)
+|.+.+++. +..||+.+|...-..+.|.-.||||+.|+. ++-..+|.||.+||.|++.
T Consensus 45 aVlI~L~~~~~~~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~ 106 (246)
T KOG3069|consen 45 AVLIPLVQVGSGELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDP 106 (246)
T ss_pred cEEEEEEEcCCCceEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCH
Confidence 444444443 347888999887766789999999999975 4677899999999999863
No 89
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=98.07 E-value=8.9e-06 Score=59.80 Aligned_cols=57 Identities=33% Similarity=0.624 Sum_probs=42.6
Q ss_pred EEEEEEEcC-Cc--eEEEEEeecCCCC---CCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 110 GVGAFVMNG-KR--EVLVVQENSGRFR---GTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 110 ~v~~~v~~~-~~--~vLlv~r~~~~~~---~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
+++++++.. .+ .|||+. ..+|+| +.|.|.+|.|....||++..||.||.-||+||.+
T Consensus 5 SAGvLlYR~~aG~v~VLLvH-PGGPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~v 67 (161)
T COG4119 5 SAGVLLYRARAGVVDVLLVH-PGGPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICV 67 (161)
T ss_pred cceeEEEEecCCCEEEEEec-CCCCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceee
Confidence 556666652 23 444543 344443 3589999999999999999999999999999865
No 90
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=97.99 E-value=5.3e-06 Score=66.16 Aligned_cols=38 Identities=37% Similarity=0.691 Sum_probs=33.8
Q ss_pred eEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhh
Q 030954 121 EVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEET 163 (168)
Q Consensus 121 ~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEt 163 (168)
+++.+||+. .+.|.+|||.+++||.+-.+++||+.||.
T Consensus 140 e~vavkr~d-----~~~WAiPGGmvdpGE~vs~tLkRef~eEa 177 (275)
T KOG4195|consen 140 EFVAVKRPD-----NGEWAIPGGMVDPGEKVSATLKREFGEEA 177 (275)
T ss_pred EEEEEecCC-----CCcccCCCCcCCchhhhhHHHHHHHHHHH
Confidence 567788873 58999999999999999999999999985
No 91
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=97.84 E-value=1.8e-05 Score=60.97 Aligned_cols=59 Identities=19% Similarity=0.254 Sum_probs=53.0
Q ss_pred eEEEEEEEcCCceEEEEEeecCCCCCCCeEEee-eEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFP-TGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 109 ~~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lP-gG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
.+..++++|.+|++|+.||...+...++.|.-- .||--+||+..+|++|-+.+|+||+.
T Consensus 34 rAFS~~lFne~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~ 93 (185)
T COG1443 34 RAFSSFLFNERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEP 93 (185)
T ss_pred hhhheeEECCCCceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCC
Confidence 367889999999999999998887778999875 58888999999999999999999975
No 92
>PLN02839 nudix hydrolase
Probab=97.75 E-value=0.00076 Score=57.85 Aligned_cols=117 Identities=15% Similarity=0.126 Sum_probs=70.4
Q ss_pred CCHHHHHHHHHHHHHHHHHcCcceEEEeccccccccchhhhhccceeeecCCcEEEEEEeecCCCCCCCCCCcceeEEEE
Q 030954 34 MDPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVGA 113 (168)
Q Consensus 34 ~~~~~f~~~l~~~l~~w~~~~~~~vw~~~p~~~~~l~~~~~~~gf~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~~ 113 (168)
.+.++-.+.|.+.+..|++++.=.=| .-++.++....| .+-+..+- .....+-.....-+-..+
T Consensus 147 ~t~~~Rt~al~~v~~~lr~~g~~~gW------RnE~y~V~~~~~------~~~l~~iE----RaA~~lfGi~tyGVHlNG 210 (372)
T PLN02839 147 QKPEDRTRAVADVIKILGDKGIIPGI------RNELYPVKPSFN------APVFFSLE----RAAAPYFGIKGYGVHMNG 210 (372)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCc------ccCccccccCCC------CcceEEEe----eccccccCceeEEEEEEE
Confidence 35788888999999999998741113 122222221100 11122211 111111111112222223
Q ss_pred EEEc-CCceEEEEEeecCCCCCCCeEEe-eeEecCCCCCHHHHHHHHHHHhhCcc
Q 030954 114 FVMN-GKREVLVVQENSGRFRGTGIWKF-PTGVVDEGEDICVAAVREVKEETSVS 166 (168)
Q Consensus 114 ~v~~-~~~~vLlv~r~~~~~~~~g~w~l-PgG~ve~gE~~~eaa~REl~EEtGl~ 166 (168)
++.. .+.++++.||...+...+|+|.- .+|.+..||++.++++||..||.|+.
T Consensus 211 yv~~~g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp 265 (372)
T PLN02839 211 YVERDGQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGIS 265 (372)
T ss_pred EEecCCCeEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCC
Confidence 3333 34578888998887778999975 57999999999999999999999985
No 93
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=97.42 E-value=0.00026 Score=50.42 Aligned_cols=52 Identities=21% Similarity=0.385 Sum_probs=32.4
Q ss_pred EEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCcc
Q 030954 113 AFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVS 166 (168)
Q Consensus 113 ~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~ 166 (168)
+++++.++++||.||.....++ |+|+||.-..+...+ .+.+.+.+.+..|+.
T Consensus 2 ~~i~~~~~~~Ll~kRp~~gll~-GLwefP~~e~~~~~~-~~~l~~~~~~~~~~~ 53 (114)
T PF14815_consen 2 LLIIRSQGRVLLEKRPEKGLLA-GLWEFPLIESDEEDD-EEELEEWLEEQLGLS 53 (114)
T ss_dssp EEEEETTSEEEEEE--SSSTTT-T-EE--EEE-SSS-C-HHHHHHHTCCSSS-E
T ss_pred EEEEEeCCEEEEEECCCCChhh-cCcccCEeCccCCCC-HHHHHHHHHHHcCCC
Confidence 5778899999999999888776 999999988874333 555555555666653
No 94
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=96.65 E-value=0.00021 Score=60.07 Aligned_cols=54 Identities=31% Similarity=0.514 Sum_probs=44.6
Q ss_pred eEEEEEEEcCC-ceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 109 VGVGAFVMNGK-REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 109 ~~v~~~v~~~~-~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
...++++++.. .++||++... ...|.+|-|++..+|+-.++|+|||.||||.++
T Consensus 83 Pv~ga~ild~~~sr~llv~g~q-----a~sw~fprgK~~kdesd~~caiReV~eetgfD~ 137 (348)
T KOG2937|consen 83 PVRGAIILDEKRSRCLLVKGWQ-----ASSWSFPRGKISKDESDSDCAIREVTEETGFDY 137 (348)
T ss_pred CCchHhhhhhhhhhhheeecee-----cccccccCccccccchhhhcchhcccchhhcCH
Confidence 35677888854 5788887753 345999999999999999999999999999864
No 95
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=96.35 E-value=0.016 Score=45.41 Aligned_cols=40 Identities=30% Similarity=0.424 Sum_probs=29.5
Q ss_pred ceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCc
Q 030954 120 REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSV 165 (168)
Q Consensus 120 ~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl 165 (168)
.+|||.|.. ...|.+|||...+||+..++.+|.+.+-.|.
T Consensus 58 PHvLLLq~~------~~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~ 97 (188)
T PF13869_consen 58 PHVLLLQIG------NTFFKLPGGRLRPGEDEIEGLKRKLTEKLSP 97 (188)
T ss_dssp EEEEEEEET------TTEEE-SEEE--TT--HHHHHHHHHHHHHB-
T ss_pred cEEEEEecc------CccccCCccEeCCCCChhHHHHHHHHHHcCC
Confidence 579999964 3589999999999999999999999887765
No 96
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=95.30 E-value=0.041 Score=42.56 Aligned_cols=47 Identities=26% Similarity=0.432 Sum_probs=38.3
Q ss_pred EEEEEcCC--ceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhC
Q 030954 112 GAFVMNGK--REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETS 164 (168)
Q Consensus 112 ~~~v~~~~--~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtG 164 (168)
+++++.+. .+|||.|-. .-.+++|||..++||+-.+..+|-+-|-+|
T Consensus 74 gvlivheH~lPHvLLLQig------~tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lg 122 (221)
T KOG1689|consen 74 GVLIVHEHNLPHVLLLQIG------NTFFKLPGGRLRPGEDEADGLKRLLTESLG 122 (221)
T ss_pred eeEEEeecCCCeEEEEeeC------CEEEecCCCccCCCcchhHHHHHHHHHHhc
Confidence 33445433 689988874 467999999999999999999999999888
No 97
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=94.56 E-value=0.045 Score=45.94 Aligned_cols=32 Identities=22% Similarity=0.258 Sum_probs=29.2
Q ss_pred eEEeeeEecCCCCCHHHHHHHHHHHhhCcccC
Q 030954 137 IWKFPTGVVDEGEDICVAAVREVKEETSVSIN 168 (168)
Q Consensus 137 ~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~~ 168 (168)
..++.+|.+++..++.+-|..|+.||.|+++.
T Consensus 80 tielc~g~idke~s~~eia~eev~eecgy~v~ 111 (405)
T KOG4432|consen 80 TIELCAGLIDKELSPREIASEEVAEECGYRVD 111 (405)
T ss_pred eeeeeccccccccCHHHHhHHHHHHHhCCcCC
Confidence 46889999999999999999999999999863
No 98
>PRK10880 adenine DNA glycosylase; Provisional
Probab=92.35 E-value=0.28 Score=42.13 Aligned_cols=32 Identities=22% Similarity=0.353 Sum_probs=24.3
Q ss_pred EEEEEEEcCCceEEEEEeecCCCCCCCeEEeee
Q 030954 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPT 142 (168)
Q Consensus 110 ~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPg 142 (168)
...++++..++++|+.||.....++ |+|+||.
T Consensus 232 ~~~~~~~~~~~~~~l~~r~~~gl~~-gl~~fP~ 263 (350)
T PRK10880 232 TGYFLLLQHGDEVWLEQRPPSGLWG-GLFCFPQ 263 (350)
T ss_pred EEEEEEEEECCEEEEEECCccChhh-ccccCCC
Confidence 3334455567899999998877765 9999996
No 99
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.96 E-value=0.12 Score=40.94 Aligned_cols=58 Identities=24% Similarity=0.473 Sum_probs=43.1
Q ss_pred EEEEEEEcCCceEEEEEeecCCCCCCCeEEee-----e---EecC--CCCCHHHHHHHHHHHhhCccc
Q 030954 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFP-----T---GVVD--EGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 110 ~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lP-----g---G~ve--~gE~~~eaa~REl~EEtGl~~ 167 (168)
+..+++++.++++||+||...+...++.|.-- - |..+ .+.....||+|-|.-|+||..
T Consensus 54 aFSVFlFns~~~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~ 121 (225)
T KOG0142|consen 54 AFSVFLFNSKNELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPL 121 (225)
T ss_pred eeeEEEecCcchHHHhhhccccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCc
Confidence 67789999999999999988776667777532 1 1111 123567899999999999964
No 100
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=90.32 E-value=0.68 Score=39.02 Aligned_cols=31 Identities=26% Similarity=0.195 Sum_probs=27.5
Q ss_pred eEEeeeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 137 IWKFPTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 137 ~w~lPgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
..+|.+|.|+..-+..+-|.||..||+|+++
T Consensus 285 TlELcag~Vd~p~s~~e~a~~e~veecGYdl 315 (405)
T KOG4432|consen 285 TLELCAGRVDDPFSDPEKAARESVEECGYDL 315 (405)
T ss_pred eeeeecccCCCCcccHHHHHHHHHHHhCCCC
Confidence 4577889999888999999999999999975
No 101
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=90.11 E-value=0.75 Score=38.18 Aligned_cols=31 Identities=29% Similarity=0.390 Sum_probs=23.5
Q ss_pred EEEEEEcCCceEEEEEeecCCCCCCCeEEeee
Q 030954 111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPT 142 (168)
Q Consensus 111 v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPg 142 (168)
..+++.+.++++|+.+|.....++ |+|+||+
T Consensus 230 ~~~~~~~~~~~~~~~~r~~~~~~~-gl~~~p~ 260 (275)
T TIGR01084 230 YFLVLQNYDGEVLLEQRPEKGLWG-GLYCFPQ 260 (275)
T ss_pred EEEEEEeCCCeEEEEeCCCCchhh-ccccCCC
Confidence 333444667899999998776654 9999997
No 102
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=78.99 E-value=3.7 Score=33.75 Aligned_cols=42 Identities=21% Similarity=0.435 Sum_probs=34.5
Q ss_pred ceEEEEEeecCCCCCCCeEEeeeEec-CCCCCHHHHHHHHHHHhhC
Q 030954 120 REVLVVQENSGRFRGTGIWKFPTGVV-DEGEDICVAAVREVKEETS 164 (168)
Q Consensus 120 ~~vLlv~r~~~~~~~~g~w~lPgG~v-e~gE~~~eaa~REl~EEtG 164 (168)
.-+||++++.+. .+.|.||-+.. ++++++..+|.|++.+-.|
T Consensus 139 ~LyLLV~~k~g~---~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~g 181 (263)
T KOG4548|consen 139 KLYLLVKRKFGK---SSVWIFPNRQFSSSEKTLRGHAERDLKVLSG 181 (263)
T ss_pred eEEEEEeeccCc---cceeeCCCcccCCccchHHHHHHHHHHHHhc
Confidence 457778866554 47999999999 8999999999999987666
No 103
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=77.81 E-value=6.5 Score=30.43 Aligned_cols=52 Identities=27% Similarity=0.386 Sum_probs=33.3
Q ss_pred EEEcCCceEEEEEeecCCCC--CCCeEEe-eeEecCCCC---CHHHH----HHHHHHHhhCcc
Q 030954 114 FVMNGKREVLVVQENSGRFR--GTGIWKF-PTGVVDEGE---DICVA----AVREVKEETSVS 166 (168)
Q Consensus 114 ~v~~~~~~vLlv~r~~~~~~--~~g~w~l-PgG~ve~gE---~~~ea----a~REl~EEtGl~ 166 (168)
+|.+. .+||+-.|-.+..- -.+.+.+ -|||+..++ +..+. +.||+.||.++.
T Consensus 67 vi~~e-devliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vs 128 (203)
T COG4112 67 VIMDE-DEVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVS 128 (203)
T ss_pred EEecC-CEEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcC
Confidence 44554 49999888654310 0245555 489998654 33332 679999999975
No 104
>PRK13910 DNA glycosylase MutY; Provisional
Probab=74.10 E-value=5.4 Score=33.39 Aligned_cols=27 Identities=15% Similarity=0.386 Sum_probs=19.3
Q ss_pred EEEcCCceEEEEEeecCCCCCCCeEEeeeE
Q 030954 114 FVMNGKREVLVVQENSGRFRGTGIWKFPTG 143 (168)
Q Consensus 114 ~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG 143 (168)
++++ ++++||.||. ...+ .|+|+||..
T Consensus 192 ~~~~-~~~~ll~kr~-~~l~-~gl~~fP~~ 218 (289)
T PRK13910 192 VVIQ-NNQIALEKIE-QKLY-LGMHHFPNL 218 (289)
T ss_pred EEEE-CCEEEEEECC-Cchh-cccccCCCC
Confidence 4444 5789999885 4455 499999973
No 105
>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]
Probab=71.02 E-value=4.5 Score=33.35 Aligned_cols=56 Identities=20% Similarity=0.210 Sum_probs=41.4
Q ss_pred EEEEEcCC---ceEEEEEeecCCCCCCCeEEe-eeEecCCCCCHHHHHHHHHHHhhCccc
Q 030954 112 GAFVMNGK---REVLVVQENSGRFRGTGIWKF-PTGVVDEGEDICVAAVREVKEETSVSI 167 (168)
Q Consensus 112 ~~~v~~~~---~~vLlv~r~~~~~~~~g~w~l-PgG~ve~gE~~~eaa~REl~EEtGl~~ 167 (168)
.+.|.+.. -.+.+.||+..+...++.|.- .||.+..|-.+.++|+.|..||..+..
T Consensus 137 ngYV~~pk~~~l~iWvprRS~TKqTWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~ 196 (306)
T KOG4313|consen 137 NGYVRHPKLGPLCIWVPRRSNTKQTWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPS 196 (306)
T ss_pred eeeecCCCcCceEEEecccCCccccCcchhhhhhccccccCchHHHHHHHHHHHhcCCch
Confidence 33444433 356777777665555677764 689999999999999999999998753
No 106
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=69.86 E-value=4.3 Score=23.84 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=11.9
Q ss_pred eeeEecCCCCCHHHHHHHHHHHhh
Q 030954 140 FPTGVVDEGEDICVAAVREVKEET 163 (168)
Q Consensus 140 lPgG~ve~gE~~~eaa~REl~EEt 163 (168)
.-||...+|--+..++.||+.||.
T Consensus 13 ClggLasPgPvp~~~alkELIeEL 36 (43)
T PF03487_consen 13 CLGGLASPGPVPSSTALKELIEEL 36 (43)
T ss_dssp ----------S-HHHHHHHHHHHH
T ss_pred HhcccCCCCCCCchHHHHHHHHHH
Confidence 347777888888899999999985
No 107
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]
Probab=67.03 E-value=5.1 Score=34.35 Aligned_cols=39 Identities=26% Similarity=0.433 Sum_probs=30.9
Q ss_pred eeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCC
Q 030954 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDE 147 (168)
Q Consensus 108 ~~~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~ 147 (168)
....+.++.+.++.+++.+|...+.++ |+|+||....+.
T Consensus 235 ~~~~~~~~~~~~~~~~l~kr~~~gl~~-gl~~fP~~e~~~ 273 (342)
T COG1194 235 RRFAAFLILNRDGEVLLEKRPEKGLLG-GLWCFPQFEDEA 273 (342)
T ss_pred hheeeEEEEccCcchhhhhCcccCcee-cccccccccccc
Confidence 445666777888999999998887765 999999876544
No 108
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=57.06 E-value=2.6 Score=35.92 Aligned_cols=65 Identities=25% Similarity=0.400 Sum_probs=44.2
Q ss_pred CCCCCCCcceeEEEEEEEcCC-ceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhCcc
Q 030954 99 NTLPANASHRVGVGAFVMNGK-REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSVS 166 (168)
Q Consensus 99 ~~~~~~~~~~~~v~~~v~~~~-~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtGl~ 166 (168)
++.|.+.......+.++.+-. +.+..++-.... +..|.||.|.+..||-+.++++|+-.||+|..
T Consensus 229 ak~~e~~~~~~tl~~~~t~v~~d~~~~aqS~~~~---~e~~~~~~~k~sr~e~~r~~si~s~~~e~~f~ 294 (348)
T KOG2937|consen 229 AKFPEKKSTVPTLGAALTDVEMDHVVTAQSYFAK---PENWTFPKGKISRGEKPRDASIRSTFEEPGFP 294 (348)
T ss_pred hcCcccCccchhHHhhhhccccccceeecccccc---cccccCcccccccCCccccchhhhcCCCcCCc
Confidence 455555555555555555522 223333333322 46899999999999999999999999999875
No 109
>PF14443 DBC1: DBC1
Probab=38.49 E-value=34 Score=25.23 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=22.7
Q ss_pred CeEEe--eeEecCCC-CCHHHHHHHHHHHhhCccc
Q 030954 136 GIWKF--PTGVVDEG-EDICVAAVREVKEETSVSI 167 (168)
Q Consensus 136 g~w~l--PgG~ve~g-E~~~eaa~REl~EEtGl~~ 167 (168)
|.|.- =||-.+.+ ..+..+|+|-+++-|||+.
T Consensus 24 G~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDL 58 (126)
T PF14443_consen 24 GPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDL 58 (126)
T ss_pred CcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccch
Confidence 55643 34444443 3588999999999999975
No 110
>PF12860 PAS_7: PAS fold
Probab=35.66 E-value=15 Score=25.25 Aligned_cols=43 Identities=12% Similarity=0.220 Sum_probs=33.4
Q ss_pred EEEEEEEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHH
Q 030954 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVR 157 (168)
Q Consensus 110 ~v~~~v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~R 157 (168)
..++++++.++++++.-++.. ..|.+|...+..|-+..+.+.+
T Consensus 5 ~~Gv~v~D~~~rl~~~N~~~~-----~l~~~~~~~~~~G~~~~~l~~~ 47 (115)
T PF12860_consen 5 PQGVAVFDSDGRLVFWNQRFR-----ELFGLPPEMLRPGASFRDLLRR 47 (115)
T ss_pred CceEEEEcCCCeEEeEcHHHH-----HHhCCCHHHhcCCCCHHHHHHH
Confidence 467789999999999887753 5788999888888886665443
No 111
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=32.49 E-value=73 Score=24.13 Aligned_cols=42 Identities=7% Similarity=0.140 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHcCcceEEEeccccccccchhhhhccceee
Q 030954 40 ASLLKSSISHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFH 81 (168)
Q Consensus 40 ~~~l~~~l~~w~~~~~~~vw~~~p~~~~~l~~~~~~~gf~~~ 81 (168)
++.++..+...++.+...||+.+...+........+.||.+.
T Consensus 142 ~~ll~~~~~~a~~~g~~~I~l~v~~~N~~A~~~Y~klGF~~~ 183 (191)
T TIGR02382 142 AELMQTALNWCYARGLTRLRVATQMGNTAALRLYIRSGANIE 183 (191)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHcCCccc
Confidence 445666667778888899999999998888888899999764
No 112
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=30.91 E-value=88 Score=21.08 Aligned_cols=44 Identities=14% Similarity=0.123 Sum_probs=30.9
Q ss_pred HHHHHHHHHHcCcceEEEeccccccccchhhhhccceeeecCCc
Q 030954 43 LKSSISHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFHHAEPN 86 (168)
Q Consensus 43 l~~~l~~w~~~~~~~vw~~~p~~~~~l~~~~~~~gf~~~~~~~~ 86 (168)
|+..+..-++.+.+.+|+.+...+........+.||........
T Consensus 76 l~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~~ 119 (131)
T TIGR01575 76 LRELIDEAKGRGVNEIFLEVRVSNIAAQALYKKLGFNEIAIRRN 119 (131)
T ss_pred HHHHHHHHHHcCCCeEEEEEecccHHHHHHHHHcCCCccccccc
Confidence 33344455555778999998888877888888999976554333
No 113
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=29.44 E-value=1.3e+02 Score=21.22 Aligned_cols=50 Identities=12% Similarity=0.079 Sum_probs=37.8
Q ss_pred HHHHHHHHHHH-HHcCcceEEEeccccccccchhhhhccceeeecCCcEEE
Q 030954 40 ASLLKSSISHW-RQQAKKGVWIKLPIELANLVEPAVKEGFWFHHAEPNYLM 89 (168)
Q Consensus 40 ~~~l~~~l~~w-~~~~~~~vw~~~p~~~~~l~~~~~~~gf~~~~~~~~~~~ 89 (168)
...+...+... ++.+.+.|.+.++..+...+....+.||.......++..
T Consensus 95 ~~l~~~l~~~af~~~~~~~i~~~v~~~N~~~i~~~~~~GF~~~g~~~~~~~ 145 (155)
T PF13420_consen 95 RKLLDELIEYAFKELGIHKIYLEVFSSNEKAINFYKKLGFEEEGELKDHIF 145 (155)
T ss_dssp HHHHHHHHHHH-HHTT-CEEEEEEETT-HHHHHHHHHTTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHhhhccCeEEEEEEEecCCHHHHHHHHhCCCEEEEEEecEEE
Confidence 44555556666 788999999999999999999999999998765555443
No 114
>PF09505 Dimeth_Pyl: Dimethylamine methyltransferase (Dimeth_PyL); InterPro: IPR012653 This family consists of dimethylamine methyltransferases from the genus Methanosarcina. It is found in three nearly identical copies in each of Methanosarcina acetivorans, Methanosarcina barkeri, and Methanosarcina mazei. It is one of a suite of three non-homologous enzymes with a critical UAG-encoded pyrrolysine residue in these species (along with trimethylamine methyltransferase and monomethylamine methyltransferase). It demethylates dimethylamine, leaving monomethylamine, and methylates the prosthetic group of the small corrinoid protein MtbC. The methyl group is then transferred by methylcorrinoid:coenzyme M methyltransferase to coenzyme M. Note that the pyrrolysine residue is variously translated as K or X, or as a stop codon that truncates the sequence.; GO: 0008168 methyltransferase activity, 0015948 methanogenesis
Probab=29.38 E-value=32 Score=29.69 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=18.1
Q ss_pred ecCCCCCHHHHHHHHHHHhhCcc
Q 030954 144 VVDEGEDICVAAVREVKEETSVS 166 (168)
Q Consensus 144 ~ve~gE~~~eaa~REl~EEtGl~ 166 (168)
.|+..+-..+.+.||++||++|-
T Consensus 408 ~V~~~dLsDe~~MrelReeL~IG 430 (466)
T PF09505_consen 408 GVEPMDLSDEYVMRELREELNIG 430 (466)
T ss_pred CCChhhcccHHHHHHHHHhcCcc
Confidence 34556666789999999999974
No 115
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=28.33 E-value=1.1e+02 Score=18.90 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHcCcceEEEeccccccccchhhhhccce
Q 030954 40 ASLLKSSISHWRQQAKKGVWIKLPIELANLVEPAVKEGFW 79 (168)
Q Consensus 40 ~~~l~~~l~~w~~~~~~~vw~~~p~~~~~l~~~~~~~gf~ 79 (168)
...++..+..-++.+.+.|++.+...+.....-..+.||.
T Consensus 44 ~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~k~Gf~ 83 (83)
T PF00583_consen 44 SKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYEKLGFE 83 (83)
T ss_dssp HHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHHHTTEE
T ss_pred hhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHHHcCCC
Confidence 3344555566666788999999988888777777777764
No 116
>PF07026 DUF1317: Protein of unknown function (DUF1317); InterPro: IPR009750 This entry is represented by Bacteriophage lambda, Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=23.13 E-value=71 Score=20.36 Aligned_cols=15 Identities=27% Similarity=0.366 Sum_probs=11.7
Q ss_pred CeEEeeeEecCCCCC
Q 030954 136 GIWKFPTGVVDEGED 150 (168)
Q Consensus 136 g~w~lPgG~ve~gE~ 150 (168)
..|-+|||.+-.+-.
T Consensus 22 ~GWl~Pgg~vi~NPl 36 (60)
T PF07026_consen 22 NGWLMPGGKVITNPL 36 (60)
T ss_pred ceeecCCCeeEcCHH
Confidence 469999999986543
No 117
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=22.36 E-value=2.2e+02 Score=20.11 Aligned_cols=47 Identities=13% Similarity=0.164 Sum_probs=33.4
Q ss_pred HHHHHHHHHH-cCcceEEEeccccccccchhhhhccceeeecCCcEEE
Q 030954 43 LKSSISHWRQ-QAKKGVWIKLPIELANLVEPAVKEGFWFHHAEPNYLM 89 (168)
Q Consensus 43 l~~~l~~w~~-~~~~~vw~~~p~~~~~l~~~~~~~gf~~~~~~~~~~~ 89 (168)
|...+...++ .+...+++.+...+...+....+.||........+..
T Consensus 100 l~~l~~~~~~~~~~~~i~l~v~~~N~~a~~~y~k~GF~~~g~~~~~~~ 147 (162)
T PRK10140 100 MREMIEMCDNWLRVDRIELTVFVDNAPAIKVYKKYGFEIEGTGKKYAL 147 (162)
T ss_pred HHHHHHHHHhhCCccEEEEEEEcCCHHHHHHHHHCCCEEEeeccccee
Confidence 3334444455 4678898888888888888888999998766555443
No 118
>PRK07198 hypothetical protein; Validated
Probab=22.27 E-value=1.2e+02 Score=26.83 Aligned_cols=44 Identities=18% Similarity=0.254 Sum_probs=30.1
Q ss_pred EEcCCceEEEEEeecCCCCCCCeEEeeeEecCCCCCHHHHHHHHHHHhhC
Q 030954 115 VMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETS 164 (168)
Q Consensus 115 v~~~~~~vLlv~r~~~~~~~~g~w~lPgG~ve~gE~~~eaa~REl~EEtG 164 (168)
|++.++.+.+.+-.-.| .|-|||=--.-| --+...+|-++|+||
T Consensus 157 i~~~~g~~~vtk~av~p-----vwylpgva~rfg-~~e~~lrr~lfe~t~ 200 (418)
T PRK07198 157 ILLANGDVVVTKAAIEP-----VWYLPGVAERFG-VSETDLRRTLFEQTG 200 (418)
T ss_pred eecCCCcEEEEEeeecc-----cccccchHHHcC-CCHHHHHHHHHHHcC
Confidence 34567788887776544 799998332222 335667889999998
No 119
>PF02290 SRP14: Signal recognition particle 14kD protein; InterPro: IPR003210 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the 14 kDa SRP14 component. Both SRP9 and SRP14 have the same (beta)-alpha-beta(3)-alpha fold. The heterodimer has pseudo two-fold symmetry and is saddle-like, consisting of a curved six-stranded beta-sheet that has four helices packed on the convex side and an exposed concave surface lined with positively charged residues. The SRP9/SRP14 heterodimer is essential for SRP RNA binding, mediating the pausing of synthesis of ribosome associated nascent polypeptides that have been engaged by the targeting domain of SRP [].; GO: 0008312 7S RNA binding, 0030942 endoplasmic reticulum signal peptide binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0005786 signal recognition particle, endoplasmic reticulum targeting; PDB: 1914_A 1RY1_D 1E8O_B 2W9J_B.
Probab=20.33 E-value=1.1e+02 Score=21.13 Aligned_cols=30 Identities=13% Similarity=0.138 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHHHHHHHHcCcceEEEecccc
Q 030954 35 DPQLFASLLKSSISHWRQQAKKGVWIKLPIE 65 (168)
Q Consensus 35 ~~~~f~~~l~~~l~~w~~~~~~~vw~~~p~~ 65 (168)
+.++|-..|....+.-+..+ ..||+.+-..
T Consensus 2 ~ndeFL~~L~~lf~~~~~k~-gSV~lT~KR~ 31 (93)
T PF02290_consen 2 SNDEFLSELTKLFEKSKEKG-GSVYLTQKRL 31 (93)
T ss_dssp -HHHHHHHHHHHHHHCSSSS-S-EEEEEEEE
T ss_pred CHHHHHHHHHHHHHHcccCC-ceEEEEEeec
Confidence 56899999998887777776 7899766444
No 120
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=20.10 E-value=36 Score=28.69 Aligned_cols=29 Identities=17% Similarity=0.149 Sum_probs=27.0
Q ss_pred eEEeeeEecCCCCCHHHHHHHHHHHhhCcc
Q 030954 137 IWKFPTGVVDEGEDICVAAVREVKEETSVS 166 (168)
Q Consensus 137 ~w~lPgG~ve~gE~~~eaa~REl~EEtGl~ 166 (168)
.|.. .|+..-++++.+++.|++.+++|..
T Consensus 56 ~W~~-~Gr~~iwl~l~~~~~~lV~~a~~~g 84 (295)
T KOG0648|consen 56 KWYL-QGRKGIWLKLPEELARLVEEAAKYG 84 (295)
T ss_pred HHHH-ccCcccceechHHHHhHHHHHHhcC
Confidence 7888 9999999999999999999999875
Done!