BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030956
(168 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F3Y|A Chain A, Solution Structure Of The Nudix Enzyme Diadenosine
Tetraphosphate Hydrolase From Lupinus Angustifolius L.
pdb|1JKN|A Chain A, Solution Structure Of The Nudix Enzyme Diadenosine
Tetraphosphate Hydrolase From Lupinus Angustifolius
Complexed With Atp
Length = 165
Score = 188 bits (477), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 84/139 (60%), Positives = 109/139 (78%), Gaps = 1/139 (0%)
Query: 17 QIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPP 76
+IF ASRL++P AWQMPQGGI++GEDP+ AA+RELREETG+ SAE+IAEVP WLTYDFPP
Sbjct: 27 KIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYWLTYDFPP 86
Query: 77 AVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEIN-LANGEADPEFAEWKWASPEEVVEQA 135
V+ K+N WG +W GQAQKWFL K T + EIN L +G PEF EW W +PE++++
Sbjct: 87 KVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLIDLT 146
Query: 136 VDYKRPTYEEVMRTFRPYL 154
V++K+P Y+EV+ F P+L
Sbjct: 147 VEFKKPVYKEVLSVFAPHL 165
>pdb|2KDV|A Chain A, Solution Structure Of Rna Pyrophosphohydrolase Rpph From
Escherichia Coli
Length = 164
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 73/140 (52%), Gaps = 13/140 (9%)
Query: 16 GQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE--IIAEVPNWLTYD 73
GQ+ A R +WQ PQGGI GE + A REL EE G+ + I+A NWL Y
Sbjct: 20 GQVMWARRFG-QHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDVRILASTRNWLRYK 78
Query: 74 FPPAV---KTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEE 130
P + TK + GQ QKWFL++L + ++EIN+ + PEF W+W S
Sbjct: 79 LPKRLVRWDTKPVCI------GQKQKWFLLQLVSGDAEINMQTS-STPEFDGWRWVSYWY 131
Query: 131 VVEQAVDYKRPTYEEVMRTF 150
V Q V +KR Y VM+ F
Sbjct: 132 PVRQVVSFKRDVYRRVMKEF 151
>pdb|2KDW|A Chain A, Solution Structure Of Rpph Mutant E53a From Escherichia
Coli
Length = 164
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 72/140 (51%), Gaps = 13/140 (9%)
Query: 16 GQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE--IIAEVPNWLTYD 73
GQ+ A R +WQ PQGGI GE + A R L EE G+ + I+A NWL Y
Sbjct: 20 GQVMWARRFG-QHSWQFPQGGINPGESAEQAMYRALFEEVGLSRKDVRILASTRNWLRYK 78
Query: 74 FPPAV---KTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEE 130
P + TK + GQ QKWFL++L + ++EIN+ + PEF W+W S
Sbjct: 79 LPKRLVRWDTKPVCI------GQKQKWFLLQLVSGDAEINMQTS-STPEFDGWRWVSYWY 131
Query: 131 VVEQAVDYKRPTYEEVMRTF 150
V Q V +KR Y VM+ F
Sbjct: 132 PVRQVVSFKRDVYRRVMKEF 151
>pdb|3OGA|A Chain A, 1.75 Angstrom Resolution Crystal Structure Of A Putative
Ntp Pyrophosphohydrolase (Yfao) From Salmonella
Typhimurium Lt2
pdb|3OGA|B Chain B, 1.75 Angstrom Resolution Crystal Structure Of A Putative
Ntp Pyrophosphohydrolase (Yfao) From Salmonella
Typhimurium Lt2
Length = 165
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 12/118 (10%)
Query: 14 YLGQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYD 73
YL +R PG W + GG+E GE + A RE+REE G I++++ W T+
Sbjct: 41 YLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELG--EQLILSDITPW-TFR 97
Query: 74 FPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEV 131
+KT + G+ ++ +++ L D N + + EF ++ W PEE+
Sbjct: 98 DDIRIKTYAD--------GRQEEIYMIYLIFDCVSAN-RDICINDEFQDYAWVKPEEL 146
>pdb|1SJY|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 From
Deinococcus Radiodurans
pdb|1SOI|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 In Complex
With Sm+3
pdb|1SU2|A Chain A, Crystal Structure Of The Nudix Hydrolase Dr1025 In
Complex With Atp
pdb|1SU2|B Chain B, Crystal Structure Of The Nudix Hydrolase Dr1025 In
Complex With Atp
pdb|1SZ3|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 In Complexed
With Gnp And Mg+2
pdb|1SZ3|B Chain B, Crystal Structure Of Nudix Hydrolase Dr1025 In Complexed
With Gnp And Mg+2
Length = 159
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 6/48 (12%)
Query: 16 GQIFVASRLNVPGA------WQMPQGGIEDGEDPKLAAMRELREETGI 57
G I + +PG W +P G +EDGE+P+ AA+RE EETG+
Sbjct: 25 GDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGL 72
>pdb|3EES|A Chain A, Structure Of The Rna Pyrophosphohydrolase Bdrpph
pdb|3EES|B Chain B, Structure Of The Rna Pyrophosphohydrolase Bdrpph
pdb|3EEU|A Chain A, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Holmium
pdb|3EEU|B Chain B, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Holmium
pdb|3EF5|A Chain A, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Dgtp
pdb|3EF5|B Chain B, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Dgtp
pdb|3FFU|A Chain A, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Gtp And Magnesium
pdb|3FFU|B Chain B, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Gtp And Magnesium
Length = 153
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 16 GQIFVASR---LNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 57
G+I V R ++ G W+ P G IE+GE P+ A REL EE GI
Sbjct: 33 GKILVGQRPENNSLAGQWEFPGGKIENGETPEEALARELNEELGI 77
>pdb|3N77|A Chain A, Crystal Structure Of Idp01880, Putative Ntp
Pyrophosphohydrolase Of Salmonella Typhimurium Lt2
pdb|3N77|B Chain B, Crystal Structure Of Idp01880, Putative Ntp
Pyrophosphohydrolase Of Salmonella Typhimurium Lt2
Length = 144
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 12/115 (10%)
Query: 14 YLGQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYD 73
YL +R PG W + GG+E GE + A RE+REE G I++++ W T+
Sbjct: 20 YLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELG--EQLILSDITPW-TFR 76
Query: 74 FPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASP 128
+KT + G+ ++ +++ L D N + + EF ++ W +P
Sbjct: 77 DDIRIKTYAD--------GRQEEIYMIYLIFDCVSAN-RDICINDEFQDYAWVAP 122
>pdb|3I7U|A Chain A, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|B Chain B, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|C Chain C, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|D Chain D, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7V|A Chain A, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
pdb|3I7V|B Chain B, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
Length = 134
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 47/106 (44%), Gaps = 22/106 (20%)
Query: 5 ECSVLSMLIYLGQIFVASRLNVPG-AWQMPQGGIEDGEDPKLAAMRELREETGIVSAEI- 62
E S +L G++ + + P W P+G IE GE P+ A+RE+ EETG V EI
Sbjct: 4 EFSAGGVLFKDGEVLL---IKTPSNVWSFPKGNIEPGEKPEETAVREVWEETG-VKGEIL 59
Query: 63 --IAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDE 106
I E+ W T GE + K++LMK E
Sbjct: 60 DYIGEIHYWYTLK--------------GERIFKTVKYYLMKYKEGE 91
>pdb|2O1C|A Chain A, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O1C|B Chain B, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O1C|C Chain C, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O1C|D Chain D, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O5W|A Chain A, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
pdb|2O5W|B Chain B, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
pdb|2O5W|C Chain C, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
pdb|2O5W|D Chain D, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
Length = 150
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 6/108 (5%)
Query: 2 IYAECSVLSMLIY---LGQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI- 57
+Y + ++IY ++ + R + P WQ G +E+GE AAMRE++EE I
Sbjct: 5 VYKRPVSILVVIYAQDTKRVLMLQRRDDPDFWQSVTGSVEEGETAPQAAMREVKEEVTID 64
Query: 58 VSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTND 105
V AE + + T +F + + + + + WF + L ++
Sbjct: 65 VVAEQLTLIDCQRTVEFE--IFSHLRHRYAPGVTRNTESWFCLALPHE 110
>pdb|1KT9|A Chain A, Crystal Structure Of C. Elegans Ap4a Hydrolase
pdb|1KTG|A Chain A, Crystal Structure Of A C. Elegans Ap4a Hydrolase Binary
Complex
pdb|1KTG|B Chain B, Crystal Structure Of A C. Elegans Ap4a Hydrolase Binary
Complex
Length = 138
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 21/128 (16%)
Query: 27 PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLW 86
P W P+G ++ GED AA+RE +EE I ++ T + K K + W
Sbjct: 29 PHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAKGKPKSVKYW 88
Query: 87 GGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEV 146
L KL N + ++ L++ E WKW E+ ++ A DY +
Sbjct: 89 ------------LAKLNNPD-DVQLSH-----EHQNWKWCELEDAIKIA-DYAE--MGSL 127
Query: 147 MRTFRPYL 154
+R F +L
Sbjct: 128 LRKFSAFL 135
>pdb|2DSB|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|C Chain C, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|D Chain D, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
Length = 227
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 8 VLSMLIYLGQIFVASRLNVP-GAW--QMPQGGIEDGEDPKLAAMRELREETG 56
VL ++ I + + P G + + P G I+DGE P+ AA+REL EETG
Sbjct: 67 VLQRTLHYECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETG 118
>pdb|2FVV|A Chain A, Human Diphosphoinositol Polyphosphate Phosphohydrolase 1
pdb|2Q9P|A Chain A, Human Diphosphoinositol Polyphosphate Phosphohydrolase
1, Mg-F Complex
Length = 194
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 17 QIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 57
++ + S P W +P GG+E E+P +AA+RE+ EE G+
Sbjct: 55 EVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGV 95
>pdb|2YVM|A Chain A, Crystal Structure Of Ndx2 In Complex With Mg2+ From
Thermus Thermophilus Hb8
pdb|2YVN|A Chain A, Crystal Structure Of Ndx2 From Thermus Thermophilus Hb8
pdb|2YVO|A Chain A, Crystal Structure Of Ndx2 In Complex With Mg2+ And Amp
From Thermus Thermophilus Hb8
pdb|2YVP|A Chain A, Crystal Structure Of Ndx2 In Complex With Mg2+ And Ampcpr
From Thermus Thermophilus Hb8
Length = 182
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 30 WQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNW 69
++P G +++GE P+ AA RELREE G AE + +P++
Sbjct: 70 LEVPAGKVDEGETPEAAARRELREEVG-AEAETLIPLPSF 108
>pdb|3BM4|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Ampcpr
pdb|3BM4|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Ampcpr
Length = 210
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 8 VLSMLIYLGQIFVASRLNVP-GAW--QMPQGGIEDGEDPKLAAMRELREETG 56
VL ++ I + + P G + + P G I+DGE P+ AA+REL EETG
Sbjct: 67 VLQRTLHYECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETG 118
>pdb|2DSC|A Chain A, Crystal Structure Of Human Adp-ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Adp-ribose
pdb|2DSC|B Chain B, Crystal Structure Of Human Adp-ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Adp-ribose
pdb|2DSD|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Amp
pdb|2DSD|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Amp
Length = 212
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 8 VLSMLIYLGQIFVASRLNVP-GAW--QMPQGGIEDGEDPKLAAMRELREETG 56
VL ++ I + + P G + + P G I+DGE P+ AA+REL EETG
Sbjct: 69 VLQRTLHYECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETG 120
>pdb|3AC9|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgdp
And Manganese
pdb|3AC9|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgdp
And Manganese
pdb|3L85|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgmp
pdb|3L85|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgmp
Length = 195
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 8 VLSMLIYLGQIFVASRLNVP-GAW--QMPQGGIEDGEDPKLAAMRELREETG 56
VL ++ I + + P G + + P G I+DGE P+ AA+REL EETG
Sbjct: 54 VLQRTLHYECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETG 105
>pdb|3ACA|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dadp
And Manganese
pdb|3ACA|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dadp
And Manganese
Length = 196
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 8 VLSMLIYLGQIFVASRLNVP-GAW--QMPQGGIEDGEDPKLAAMRELREETG 56
VL ++ I + + P G + + P G I+DGE P+ AA+REL EETG
Sbjct: 55 VLQRTLHYECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETG 106
>pdb|3R03|A Chain A, The Crystal Structure Of Nudix Hydrolase From
Rhodospirillum Rubrum
pdb|3R03|B Chain B, The Crystal Structure Of Nudix Hydrolase From
Rhodospirillum Rubrum
Length = 144
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 16 GQIFVASRL---NVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 57
G++ +A R ++ G W+ P G +E GE P+ A +REL EE G+
Sbjct: 20 GRVLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGV 64
>pdb|3HHJ|A Chain A, Crystal Structure Of Mutator Mutt From Bartonella
Henselae
pdb|3HHJ|B Chain B, Crystal Structure Of Mutator Mutt From Bartonella
Henselae
Length = 158
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 25 NVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 57
++ G W+ P G +E GE P+ + +REL EE G+
Sbjct: 53 SLAGLWEFPGGKVEQGETPEASLIRELEEELGV 85
>pdb|3MCF|A Chain A, Crystal Structure Of Human Diphosphoinositol
Polyphosphate Phosphohydrolase 3-Alpha
pdb|3MCF|B Chain B, Crystal Structure Of Human Diphosphoinositol
Polyphosphate Phosphohydrolase 3-Alpha
Length = 136
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 17 QIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 57
++ + S P W +P GG+E E+P AA+RE+ EE G+
Sbjct: 17 EVLLVSSSRYPDRWIVPGGGMEPEEEPGGAAVREVYEEAGV 57
>pdb|2DUK|A Chain A, Crystal Structure Of Ms0616
pdb|2DUK|B Chain B, Crystal Structure Of Ms0616
Length = 138
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 17 QIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 57
++ + S P W +P GG+E E+P AA+RE+ EE G+
Sbjct: 25 EVLLVSSSRYPDQWIVPGGGMEPEEEPGGAAVREVYEEAGV 65
>pdb|1V8I|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase
pdb|1V8L|A Chain A, Structure Analysis Of The Adp-Ribose Pyrophosphatase
Complexed With Adp-Ribose
pdb|1V8M|A Chain A, Crystal Structure Analysis Of Adp-Ribose Pyrophosphatase
Complexed With Adp-Ribose And Gd
pdb|1V8N|A Chain A, Crystal Structure Analysis Of The Adp-ribose
Pyrophosphatase Complexed With Zn
pdb|1V8S|A Chain A, Crystal Structure Analusis Of The Adp-Ribose
Pyrophosphatase Complexed With Amp And Mg
pdb|1V8T|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Complexed With Ribose-5'-Phosphate And
Zn
pdb|1V8R|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Complexed With Adp-Ribose And Zn
Length = 170
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 43/108 (39%), Gaps = 28/108 (25%)
Query: 30 WQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGE 89
++P G IE GEDP AA REL EETG+ ++ +Y P + ++ E
Sbjct: 62 LEIPAGLIEPGEDPLEAARRELAEETGLS-----GDLTYLFSYFVSPGFTDEKTHVFLAE 116
Query: 90 WHGQAQKWFLMKLTNDESEINLANGEADP---EFAEWKWASPEEVVEQ 134
NL EA P E E W PEE +E+
Sbjct: 117 --------------------NLKEVEAHPDEDEAIEVVWMRPEEALER 144
>pdb|1PPX|A Chain A, Solution Structure Of The Mutt Pyrophosphohydrolase
Complexed With Mg(2+) And 8-Oxo-Dgmp, A Tightly-Bound
Product
pdb|1PUN|A Chain A, Solution Structure Of The Mutt Pyrophosphohydrolase
Complexed With Mg(2+) And 8-Oxo-Dgmp, A Tightly-Bound
Product
pdb|1PUQ|A Chain A, Solution Structure Of The Mutt Pyrophosphohydrolase
Complexed With Mg(2+) And 8-Oxo-Dgmp, A Tightly-Bound
Product
pdb|1PUS|A Chain A, Solution Structure Of The Mutt Pyrophosphohydrolase
Complexed With Mg(2+) And 8-Oxo-Dgmp, A Tightly-Bound
Product
pdb|1MUT|A Chain A, Nmr Study Of Mutt Enzyme, A Nucleoside Triphosphate
Pyrophosphohydrolase
pdb|1TUM|A Chain A, Mutt Pyrophosphohydrolase-Metal-Nucleotide-Metal
Complex, Nmr, 16 Structures
pdb|3A6S|A Chain A, Crystal Structure Of The Mutt Protein
pdb|3A6S|B Chain B, Crystal Structure Of The Mutt Protein
pdb|3A6T|A Chain A, Crystal Structure Of Mutt-8-Oxo-Dgmp Complex
pdb|3A6U|A Chain A, Crystal Structure Of Mutt-8-Oxo-Dgmp-Mn(Ii) Complex
pdb|3A6V|A Chain A, Crystal Structure Of The Mutt Protein In Mn(Ii) Bound
Holo Form
pdb|3A6V|B Chain B, Crystal Structure Of The Mutt Protein In Mn(Ii) Bound
Holo Form
Length = 129
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 17 QIFVASRL---NVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYD 73
+IF+ R ++ + P G IE GE P+ A +REL+EE GI + L Y+
Sbjct: 17 EIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHF--SLFEKLEYE 74
Query: 74 FP 75
FP
Sbjct: 75 FP 76
>pdb|3SMD|A Chain A, Crystal Structure Of A MutNUDIX FAMILY PROTEIN FROM
BACILLUS Thuringiensis
Length = 153
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 24 LNVPGA--WQMPQGGIEDGEDPKLAAMRELREETGI 57
PG W +P G IE GE P+ A +RE+ EETG+
Sbjct: 37 FQYPGGEYWSLPAGAIEPGETPEEAVIREVWEETGL 72
>pdb|3DKU|A Chain A, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|B Chain B, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|C Chain C, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|D Chain D, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|E Chain E, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|F Chain F, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|G Chain G, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|H Chain H, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|A Chain A, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|B Chain B, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|C Chain C, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|D Chain D, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|E Chain E, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|F Chain F, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|G Chain G, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|H Chain H, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|I Chain I, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|J Chain J, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|K Chain K, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|L Chain L, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
Length = 153
Score = 34.3 bits (77), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 51/135 (37%), Gaps = 23/135 (17%)
Query: 18 IFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA-EIIAEVPNWLTYDFPP 76
+ V +N W P G +E E AA REL EETGI + + + W+ D P
Sbjct: 19 LVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTP 78
Query: 77 AVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV 136
FL L E E D + +W S EE++ QA
Sbjct: 79 ---------------------FLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEIL-QAS 116
Query: 137 DYKRPTYEEVMRTFR 151
+ + P E +R ++
Sbjct: 117 NLRSPLVAESIRCYQ 131
>pdb|1V8V|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E86q Mutant, Complexed With
Adp-Ribose And Mg
pdb|1V8Y|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E86q Mutant, Complexed With
Adp-Ribose And Zn
Length = 170
Score = 33.9 bits (76), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 28/108 (25%)
Query: 30 WQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGE 89
++P G IE GEDP AA REL E+TG+ ++ +Y P + ++ E
Sbjct: 62 LEIPAGLIEPGEDPLEAARRELAEQTGLS-----GDLTYLFSYFVSPGFTDEKTHVFLAE 116
Query: 90 WHGQAQKWFLMKLTNDESEINLANGEADP---EFAEWKWASPEEVVEQ 134
NL EA P E E W PEE +E+
Sbjct: 117 --------------------NLKEVEAHPDEDEAIEVVWMRPEEALER 144
>pdb|1V8U|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E82q Mutant With So4 And Mg
pdb|1V8W|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E82q Mutant, Complexed With So4 And
Zn
Length = 170
Score = 33.9 bits (76), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 28/108 (25%)
Query: 30 WQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGE 89
++P G IE GEDP AA R+L EETG+ ++ +Y P + ++ E
Sbjct: 62 LEIPAGLIEPGEDPLEAARRQLAEETGLS-----GDLTYLFSYFVSPGFTDEKTHVFLAE 116
Query: 90 WHGQAQKWFLMKLTNDESEINLANGEADP---EFAEWKWASPEEVVEQ 134
NL EA P E E W PEE +E+
Sbjct: 117 --------------------NLKEVEAHPDEDEAIEVVWMRPEEALER 144
>pdb|1VC8|A Chain A, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1-Ap6a Complex
pdb|1VC8|B Chain B, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1-Ap6a Complex
pdb|1VCD|A Chain A, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1
pdb|1VCD|B Chain B, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1
Length = 126
Score = 33.5 bits (75), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 45/107 (42%), Gaps = 31/107 (28%)
Query: 28 GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWG 87
G W P+G E GE + AA+RE+ EETG+ + ++ P Y P V+ +V+
Sbjct: 24 GFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPT--RYVNPKGVEREVH---- 77
Query: 88 GEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEW----KWASPEE 130
WFLM+ GE P E W SPEE
Sbjct: 78 ---------WFLMR------------GEGAPRLEEGMTGAGWFSPEE 103
>pdb|1VC9|A Chain A, Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydrolase
E50q Mutant- Mg2+-atp Complex
pdb|1VC9|B Chain B, Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydrolase
E50q Mutant- Mg2+-atp Complex
Length = 126
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 45/107 (42%), Gaps = 31/107 (28%)
Query: 28 GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWG 87
G W P+G E GE + AA+RE+ E+TG+ + ++ P Y P V+ +V+
Sbjct: 24 GFWVFPKGHPEPGESLEEAAVREVWEQTGVRAEVLLPLYPT--RYVNPKGVEREVH---- 77
Query: 88 GEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEW----KWASPEE 130
WFLM+ GE P E W SPEE
Sbjct: 78 ---------WFLMR------------GEGAPRLEEGMTGAGWFSPEE 103
>pdb|3EXQ|A Chain A, Crystal Structure Of A Nudix Family Hydrolase From
Lactobacillus Brevis
Length = 161
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 17 QIFVASRLNVP--GAWQMPQGGIEDGEDPKLAAMRELREETGI 57
++ V ++NVP P G +E GE AA+RE+ EETG+
Sbjct: 24 RVLVEDKVNVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGL 66
>pdb|1MK1|A Chain A, Structure Of The Mt-adprase In Complex With Adpr, A Nudix
Enzyme
pdb|1MP2|A Chain A, Structure Of Mt-Adprase (Apoenzyme), A Nudix Hydrolase
From Mycobacterium Tuberculosis
pdb|1MQE|A Chain A, Structure Of The Mt-adprase In Complex With Gadolidium And
Adp-ribose, A Nudix Enzyme
pdb|1MQW|A Chain A, Structure Of The Mt-adprase In Complex With Three Mn2+
Ions And Ampcpr, A Nudix Enzyme
pdb|1MR2|A Chain A, Structure Of The Mt-Adprase In Complex With 1 Mn2+ Ion And
Amp-Cp (A Inhibitor), A Nudix Enzyme
Length = 207
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 30 WQMPQGGIE-DGEDPKLAAMRELREETGI 57
W++P G ++ GE P L A RELREE G+
Sbjct: 72 WELPAGLLDVAGEPPHLTAARELREEVGL 100
>pdb|3U53|A Chain A, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|B Chain B, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|C Chain C, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|D Chain D, Crystal Structure Of Human Ap4a Hydrolase
Length = 155
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 30 WQMPQGGIEDGEDPKLAAMRELREETGIVSAEI 62
W P+G +E GED A+RE +EE GI + ++
Sbjct: 38 WTPPKGHVEPGEDDLETALRETQEEAGIEAGQL 70
>pdb|1JRK|A Chain A, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
pdb|1JRK|B Chain B, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
pdb|1JRK|C Chain C, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
pdb|1JRK|D Chain D, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
pdb|1K26|A Chain A, Structure Of A Nudix Protein From Pyrobaculum Aerophilum
Solved By The Single Wavelength Anomolous Scattering
Method
pdb|1K26|B Chain B, Structure Of A Nudix Protein From Pyrobaculum Aerophilum
Solved By The Single Wavelength Anomolous Scattering
Method
pdb|1K2E|A Chain A, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum
pdb|1K2E|B Chain B, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum
Length = 156
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 28 GAWQMPQGGIEDGEDPKLAAMRELREETGIV 58
G + P G +E E P A RE EETGIV
Sbjct: 23 GVYIYPGGHVEHNETPIEAVKREFEEETGIV 53
>pdb|2RRK|A Chain A, Solution Structure Of The E. Coli Orf135 Protein
Length = 140
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 16 GQIFVASR---LNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 57
G+I +A R + G W+ G +E E + A +RELREE GI
Sbjct: 20 GKILLAQRPAQSDQAGLWEFAGGKVEPDESQRQALVRELREELGI 64
>pdb|3GG6|A Chain A, Crystal Structure Of The Nudix Domain Of Human Nudt18
Length = 156
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 28 GAWQMPQGGIEDGEDPKLAAMRELREETGI-VSAEIIAEV----PNWLTYDF 74
G+W +P G +E GE A RE++EE G+ E + V P+W+ + F
Sbjct: 46 GSWYLPAGRMEPGETIVEALQREVKEEAGLHCEPETLLSVEERGPSWVRFVF 97
>pdb|2QJT|B Chain B, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE COMPLEXED
With Amp And Mn Ion From Francisella Tularensis
pdb|2QJT|A Chain A, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE COMPLEXED
With Amp And Mn Ion From Francisella Tularensis
pdb|2R5W|B Chain B, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE FROM
Francisella Tularensis
pdb|2R5W|A Chain A, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE FROM
Francisella Tularensis
Length = 352
Score = 30.4 bits (67), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 7 SVLSMLIYLGQIFVASRLNVPGA--WQMPQGGIEDGEDPKLAAMRELREETGI 57
+V +++I I + R PG W +P G +E E A +REL EET I
Sbjct: 210 TVDALVIVNDHILMVQRKAHPGKDLWALPGGFLECDETIAQAIIRELFEETNI 262
>pdb|3I9X|A Chain A, Crystal Structure Of A Mutt/nudix Family Protein From
Listeria Innocua
Length = 187
Score = 30.0 bits (66), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 28 GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEII 63
G W +P G +++ E + AA REL EET + +I
Sbjct: 67 GKWAVPGGFVDENESAEQAAERELEEETSLTDIPLI 102
>pdb|2FML|A Chain A, Crystal Structure Of MuttNUDIX FAMILY PROTEIN FROM
ENTEROCOCCUS Faecalis
pdb|2FML|B Chain B, Crystal Structure Of MuttNUDIX FAMILY PROTEIN FROM
ENTEROCOCCUS Faecalis
Length = 273
Score = 30.0 bits (66), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 28 GAWQMPQGGIEDGEDPKLAAMRELREETGIV-SAEIIAEVPNWLTYDFPP 76
+W +P G + E + + +RE +EETG+V S E I ++ ++ D P
Sbjct: 70 NSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQLHSFSRPDRDP 119
>pdb|3F13|A Chain A, Crystal Structure Of Putative Nudix Hydrolase Family
Member From Chromobacterium Violaceum
pdb|3F13|B Chain B, Crystal Structure Of Putative Nudix Hydrolase Family
Member From Chromobacterium Violaceum
Length = 163
Score = 30.0 bits (66), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 16 GQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 57
G + ASR G + +P G GE A +RE+REETG+
Sbjct: 28 GVLVTASR---GGRYNLPGGKANRGELRSQALIREIREETGL 66
>pdb|3H95|A Chain A, Crystal Structure Of The Nudix Domain Of Nudt6
Length = 199
Score = 29.6 bits (65), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 18 IFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS 59
+ V R + W+ P G E ED A+RE+ EETGI S
Sbjct: 42 LVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKS 83
>pdb|3FJY|A Chain A, Crystal Structure Of A Probable Mutt1 Protein From
Bifidobacterium Adolescentis
pdb|3FJY|B Chain B, Crystal Structure Of A Probable Mutt1 Protein From
Bifidobacterium Adolescentis
Length = 364
Score = 29.6 bits (65), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 30 WQMPQGGIEDGEDPKLAAMRELREETG 56
W P+G +E E + AA+RE+ EETG
Sbjct: 51 WSWPKGKLEQNETHRHAAVREIGEETG 77
>pdb|2W4E|A Chain A, Structure Of An N-Terminally Truncated Nudix Hydrolase
Dr2204 From Deinococcus Radiodurans
pdb|2W4E|B Chain B, Structure Of An N-Terminally Truncated Nudix Hydrolase
Dr2204 From Deinococcus Radiodurans
Length = 145
Score = 29.6 bits (65), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 35 GGIEDGEDPKLAAMRELREETGIVSAE 61
GG+E GED AA REL EE G ++E
Sbjct: 39 GGVEKGEDLGAAAARELLEEVGGAASE 65
>pdb|4F40|A Chain A, X-Ray Crystal Structure Of Apo Prostaglandin F Synthase
From Leishmania Major Friedlin
pdb|4F40|B Chain B, X-Ray Crystal Structure Of Apo Prostaglandin F Synthase
From Leishmania Major Friedlin
pdb|4G5D|A Chain A, X-Ray Crystal Structure Of Prostaglandin F Synthase From
Leishmania Major Friedlin Bound To Nadph
pdb|4G5D|B Chain B, X-Ray Crystal Structure Of Prostaglandin F Synthase From
Leishmania Major Friedlin Bound To Nadph
Length = 288
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 105 DESEINLANGEADPEFAEWKWASPE-EVVEQAVDYKRPTYEEVMRTFRPYLNENGIAAKC 163
D++ + L+NG P+F W SP EV E AV + + T Y NE + A
Sbjct: 9 DKAMVTLSNGVKMPQFGLGVWQSPAGEVTENAVKWALCAGYRHIDTAAIYKNEESVGAGL 68
Query: 164 KSA 166
+++
Sbjct: 69 RAS 71
>pdb|1XSA|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (E63a Mutant)
pdb|1XSB|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (E63a Mutant) In Complex With Atp. No Atp
Restraints Included
pdb|1XSC|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (e63a Mutant) In Complex With Atp
Length = 153
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 30 WQMPQGGIEDGEDPKLAAMRELREETGIVSAEI 62
W P+G +E GED A+R +EE GI + ++
Sbjct: 43 WTPPKGHVEPGEDDLETALRATQEEAGIEAGQL 75
>pdb|3GRN|A Chain A, Crystal Structure Of Mutt Protein From Methanosarcina
Mazei Go1
pdb|3GRN|B Chain B, Crystal Structure Of Mutt Protein From Methanosarcina
Mazei Go1
Length = 153
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 22 SRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI--VSAEIIAEVPNWLT 71
SR N G W +P G + E K RE+ EETGI V +I +V LT
Sbjct: 31 SRTNA-GKWDLPGGKVNPDESLKEGVAREVWEETGITMVPGDIAGQVNFELT 81
>pdb|3NBN|A Chain A, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|D Chain D, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
Length = 433
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 77 AVKTKVNRLWGGEWHGQAQKW---FLMKLTNDESE 108
V T+ + GG +H +Q+W F+ L +DESE
Sbjct: 176 TVSTRYLHVEGGNFHASSQQWGAFFIHLLDDDESE 210
>pdb|2F8X|C Chain C, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3V79|C Chain C, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 434
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 77 AVKTKVNRLWGGEWHGQAQKW---FLMKLTNDESE 108
V T+ + GG +H +Q+W F+ L +DESE
Sbjct: 176 TVSTRYLHVEGGNFHASSQQWGAFFIHLLDDDESE 210
>pdb|3FCM|A Chain A, Crystal Structure Of A Nudix Hydrolase From Clostridium
Perfringens
pdb|3FCM|B Chain B, Crystal Structure Of A Nudix Hydrolase From Clostridium
Perfringens
Length = 197
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 19 FVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 57
F+ N+ +W G ++ +D A++EL+EETG+
Sbjct: 60 FLXIHHNIYNSWAWTGGHSDNEKDQLKVAIKELKEETGV 98
>pdb|2QKM|B Chain B, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|D Chain D, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|F Chain F, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|H Chain H, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
Length = 266
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 28 GAWQMPQGGIEDGEDPKLAAMRELREETGI 57
W P+G I+ E A+RE+ EETG
Sbjct: 121 SGWGFPKGKIDKDESDVDCAIREVYEETGF 150
>pdb|1NQY|A Chain A, The Structure Of A Coa Pyrophosphatase From D.
Radiodurans
pdb|1NQZ|A Chain A, The Structure Of A Coa Pyrophosphatase From D.
Radiodurans Complexed With A Magnesium Ion
Length = 194
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 28 GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEI 62
G P G ++ GE P AA+RE +EE + A +
Sbjct: 64 GQIAFPGGSLDAGETPTQAALREAQEEVALDPAAV 98
>pdb|2A6T|A Chain A, Crystal Structure Of S.Pombe Mrna Decapping Enzyme Dcp2p
pdb|2A6T|B Chain B, Crystal Structure Of S.Pombe Mrna Decapping Enzyme Dcp2p
Length = 271
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 28 GAWQMPQGGIEDGEDPKLAAMRELREETGI 57
W P+G I+ E A+RE+ EETG
Sbjct: 126 SGWGFPKGKIDKDESDVDCAIREVYEETGF 155
>pdb|3ALF|A Chain A, Crystal Structure Of Class V Chitinase From Nicotiana
Tobaccum
Length = 353
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 24 LNVPGAWQMPQGGIEDGEDPKLAAMRELREE---TGIVSAEIIAEV----PNWLTYDFPP 76
L P A + G ++DG +R+ E T + +A I+ + NW++YD
Sbjct: 249 LRAPAAGKSNVGAVDDGS-MTYNRIRDYIVESRATTVYNATIVGDYCYSGSNWISYDDTQ 307
Query: 77 AVKTKVNRLWG 87
V+ KVN + G
Sbjct: 308 TVRNKVNYVKG 318
>pdb|3ALG|A Chain A, Crystal Structure Of Class V Chitinase (E115q Mutant) From
Nicotiana Tobaccum In Complex With Nag4
Length = 353
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 24 LNVPGAWQMPQGGIEDGEDPKLAAMRELREE---TGIVSAEIIAEV----PNWLTYDFPP 76
L P A + G ++DG +R+ E T + +A I+ + NW++YD
Sbjct: 249 LRAPAAGKSNVGAVDDGS-MTYNRIRDYIVESRATTVYNATIVGDYCYSGSNWISYDDTQ 307
Query: 77 AVKTKVNRLWG 87
V+ KVN + G
Sbjct: 308 TVRNKVNYVKG 318
>pdb|4DYW|A Chain A, Crystal Structure Of Mutt Nudix Hydrolase From
Burkholderia Pseudomallei
pdb|4DYW|B Chain B, Crystal Structure Of Mutt Nudix Hydrolase From
Burkholderia Pseudomallei
Length = 157
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 10 SMLIYLGQIFVASRLNVP--GAWQMPQGGIEDGEDPKLAAMRELREETGI 57
+ ++ G+I + R P G W +P G ++ E + A RE+ EE GI
Sbjct: 34 AAIVRDGRILLIKRKRAPEAGCWGLPGGKVDWLEPVERAVCREIEEELGI 83
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 37 IEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQK 96
++ G++P + EL G+ ++ A + N+L + P A + + GGE A
Sbjct: 284 LQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPEAFEGVRYAITGGE---PASV 340
Query: 97 WFLMKLTNDESEINLANG 114
+ K D + L NG
Sbjct: 341 PHVAKARRDHPALRLGNG 358
>pdb|2AZW|A Chain A, Crystal Structure Of The Mutt/nudix Family Protein From
Enterococcus Faecalis
Length = 148
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 28 GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEI 62
GA+ +P G IE E + A RE+ EE GI S EI
Sbjct: 41 GAYFLPGGEIEGTETKEEAIHREVLEELGI-SVEI 74
>pdb|1EU1|A Chain A, The Crystal Structure Of Rhodobacter Sphaeroides
Dimethylsulfoxide Reductase Reveals Two Distinct
Molybdenum Coordination Environments
Length = 780
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 4 AECSVLSMLIYLGQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA 60
A+ VL + GQI V ++++ +PGA Q+ +GG D DP + + ++S
Sbjct: 682 ADGDVLRVFNDRGQILVGAKVSDAVMPGAIQIYEGGWYDPLDPSEEGTLDKYGDVNVLSL 741
Query: 61 EI 62
++
Sbjct: 742 DV 743
>pdb|1QSS|A Chain A, Ddgtp-Trapped Closed Ternary Complex Of The Large Fragment
Of Dna Polymerase I From Thermus Aquaticus
pdb|1QSY|A Chain A, Ddatp-Trapped Closed Ternary Complex Of The Large Fragment
Of Dna Polymerase I From Thermus Aquaticus
Length = 539
Score = 26.2 bits (56), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 14/62 (22%)
Query: 47 AMRELREETGIVSAEII------------AEVPNWLTYDFPPAVKTK--VNRLWGGEWHG 92
A+R+L+EE G+++ ++ + P L Y P+ T V R +GGEW
Sbjct: 49 ALRDLKEERGLLAKDLSVLALREGLGLPPGDDPMLLAYLLDPSNTTPEGVARRYGGEWTE 108
Query: 93 QA 94
+A
Sbjct: 109 EA 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,573,749
Number of Sequences: 62578
Number of extensions: 225907
Number of successful extensions: 713
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 639
Number of HSP's gapped (non-prelim): 79
length of query: 168
length of database: 14,973,337
effective HSP length: 92
effective length of query: 76
effective length of database: 9,216,161
effective search space: 700428236
effective search space used: 700428236
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)