Query 030956
Match_columns 168
No_of_seqs 103 out of 1242
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 07:05:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030956.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030956hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03671 Ap4A_hydrolase_plant_l 99.9 9.3E-24 2E-28 146.6 15.1 141 3-147 2-144 (147)
2 PRK00714 RNA pyrophosphohydrol 99.9 8.3E-23 1.8E-27 143.0 15.6 146 3-153 7-154 (156)
3 PRK09438 nudB dihydroneopterin 99.9 1.5E-21 3.2E-26 135.6 13.7 135 3-152 6-144 (148)
4 cd03672 Dcp2p mRNA decapping e 99.9 9.7E-21 2.1E-25 131.0 11.5 130 6-156 3-140 (145)
5 cd03673 Ap6A_hydrolase Diadeno 99.8 3.4E-20 7.4E-25 125.8 12.4 123 6-149 3-128 (131)
6 cd04670 Nudix_Hydrolase_12 Mem 99.8 3.6E-20 7.9E-25 125.3 12.3 113 4-136 2-115 (127)
7 PLN02325 nudix hydrolase 99.8 4.1E-20 9E-25 127.8 11.4 115 7-136 11-127 (144)
8 cd04679 Nudix_Hydrolase_20 Mem 99.8 8.2E-20 1.8E-24 123.3 12.1 114 4-136 2-117 (125)
9 cd04684 Nudix_Hydrolase_25 Con 99.8 1E-19 2.3E-24 122.9 12.2 115 8-136 3-119 (128)
10 cd04696 Nudix_Hydrolase_37 Mem 99.8 9.6E-20 2.1E-24 123.0 11.8 113 6-136 4-116 (125)
11 PF00293 NUDIX: NUDIX domain; 99.8 1.1E-19 2.4E-24 123.4 11.8 118 3-137 1-122 (134)
12 cd03424 ADPRase_NUDT5 ADP-ribo 99.8 1.7E-19 3.7E-24 123.5 12.7 115 4-138 2-119 (137)
13 PRK15434 GDP-mannose mannosyl 99.8 8.2E-20 1.8E-24 127.8 11.2 114 10-135 23-138 (159)
14 cd03675 Nudix_Hydrolase_2 Cont 99.8 2.7E-19 5.8E-24 122.1 13.3 111 7-136 2-113 (134)
15 cd04681 Nudix_Hydrolase_22 Mem 99.8 1.4E-19 3E-24 122.9 11.7 109 6-132 3-113 (130)
16 cd04700 DR1025_like DR1025 fro 99.8 1.9E-19 4.1E-24 124.2 12.1 115 3-137 12-128 (142)
17 PRK15472 nucleoside triphospha 99.8 3.3E-19 7.2E-24 122.8 13.3 55 5-59 4-62 (141)
18 cd04695 Nudix_Hydrolase_36 Mem 99.8 3.5E-19 7.7E-24 121.2 12.7 120 12-153 10-130 (131)
19 cd04689 Nudix_Hydrolase_30 Mem 99.8 2.6E-19 5.7E-24 120.8 11.8 109 8-132 4-112 (125)
20 cd03429 NADH_pyrophosphatase N 99.8 3.3E-19 7.2E-24 121.4 12.2 120 6-149 2-127 (131)
21 cd04691 Nudix_Hydrolase_32 Mem 99.8 2E-19 4.3E-24 120.2 10.4 103 8-135 3-109 (117)
22 cd04682 Nudix_Hydrolase_23 Mem 99.8 3E-19 6.4E-24 120.1 10.8 107 8-135 4-115 (122)
23 cd04683 Nudix_Hydrolase_24 Mem 99.8 3E-19 6.6E-24 119.6 10.8 110 8-137 3-117 (120)
24 cd03428 Ap4A_hydrolase_human_l 99.8 6E-19 1.3E-23 119.7 12.3 110 17-149 18-127 (130)
25 cd03430 GDPMH GDP-mannose glyc 99.8 5.7E-19 1.2E-23 122.1 12.2 116 6-134 14-132 (144)
26 cd04664 Nudix_Hydrolase_7 Memb 99.8 5.3E-19 1.2E-23 119.9 11.8 111 8-136 5-120 (129)
27 cd03674 Nudix_Hydrolase_1 Memb 99.8 1.1E-18 2.3E-23 119.9 13.3 119 5-136 3-125 (138)
28 cd04677 Nudix_Hydrolase_18 Mem 99.8 4.1E-19 8.9E-24 120.8 10.9 119 3-136 6-124 (132)
29 cd04686 Nudix_Hydrolase_27 Mem 99.8 6.1E-19 1.3E-23 120.1 11.3 115 8-135 3-120 (131)
30 cd04673 Nudix_Hydrolase_15 Mem 99.8 9.6E-19 2.1E-23 117.3 12.0 112 8-136 3-116 (122)
31 cd04680 Nudix_Hydrolase_21 Mem 99.8 4.8E-19 1E-23 118.5 10.4 108 7-136 3-110 (120)
32 cd04687 Nudix_Hydrolase_28 Mem 99.8 9.5E-19 2.1E-23 118.6 11.7 118 7-136 3-123 (128)
33 cd04661 MRP_L46 Mitochondrial 99.8 1.6E-18 3.5E-23 118.1 12.4 116 14-146 11-129 (132)
34 cd04688 Nudix_Hydrolase_29 Mem 99.8 9.2E-19 2E-23 118.3 10.8 116 8-136 4-120 (126)
35 cd02885 IPP_Isomerase Isopente 99.8 1.5E-18 3.2E-23 122.7 12.1 116 4-137 30-151 (165)
36 cd04692 Nudix_Hydrolase_33 Mem 99.8 8E-19 1.7E-23 121.3 10.5 118 3-136 1-129 (144)
37 cd04676 Nudix_Hydrolase_17 Mem 99.8 2E-18 4.4E-23 116.5 12.0 121 5-147 3-127 (129)
38 cd04672 Nudix_Hydrolase_14 Mem 99.8 1.2E-18 2.6E-23 117.3 10.7 110 8-137 5-115 (123)
39 cd04678 Nudix_Hydrolase_19 Mem 99.8 1.6E-18 3.4E-23 117.6 11.0 112 6-134 4-117 (129)
40 cd04669 Nudix_Hydrolase_11 Mem 99.8 1.5E-18 3.2E-23 116.7 10.6 107 10-136 6-116 (121)
41 cd03426 CoAse Coenzyme A pyrop 99.8 1.6E-18 3.4E-23 121.6 11.0 110 5-135 2-119 (157)
42 PRK00241 nudC NADH pyrophospha 99.8 2E-18 4.4E-23 129.4 12.1 117 8-150 135-252 (256)
43 cd04690 Nudix_Hydrolase_31 Mem 99.8 1.5E-18 3.3E-23 115.8 10.2 107 7-135 3-111 (118)
44 cd03427 MTH1 MutT homolog-1 (M 99.8 2.7E-18 5.8E-23 117.6 11.1 107 9-136 5-113 (137)
45 cd04671 Nudix_Hydrolase_13 Mem 99.8 3.5E-18 7.5E-23 115.1 10.6 104 8-133 4-109 (123)
46 cd04666 Nudix_Hydrolase_9 Memb 99.8 6.8E-18 1.5E-22 113.5 11.8 103 16-136 15-117 (122)
47 cd04667 Nudix_Hydrolase_10 Mem 99.8 3E-18 6.6E-23 113.5 9.9 99 10-136 5-103 (112)
48 PRK10546 pyrimidine (deoxy)nuc 99.8 8.7E-18 1.9E-22 114.7 12.2 117 7-150 6-125 (135)
49 cd04693 Nudix_Hydrolase_34 Mem 99.8 2.5E-18 5.3E-23 116.4 8.9 109 7-137 3-116 (127)
50 PRK03759 isopentenyl-diphospha 99.8 9.4E-18 2E-22 120.5 12.4 118 2-138 32-156 (184)
51 cd04685 Nudix_Hydrolase_26 Mem 99.8 3.5E-18 7.5E-23 116.6 9.6 119 5-134 1-123 (133)
52 PRK15393 NUDIX hydrolase YfcD; 99.8 1.1E-17 2.3E-22 119.7 12.5 125 3-150 36-165 (180)
53 cd04697 Nudix_Hydrolase_38 Mem 99.8 5E-18 1.1E-22 114.8 10.1 107 7-136 3-114 (126)
54 PRK11762 nudE adenosine nucleo 99.8 2.9E-17 6.3E-22 118.0 13.9 111 7-138 50-163 (185)
55 COG1051 ADP-ribose pyrophospha 99.8 2.1E-17 4.6E-22 114.2 11.8 113 6-137 11-125 (145)
56 cd04511 Nudix_Hydrolase_4 Memb 99.8 1.3E-17 2.7E-22 113.4 10.3 100 8-132 16-117 (130)
57 cd04699 Nudix_Hydrolase_39 Mem 99.7 2.6E-17 5.6E-22 111.3 10.8 109 8-137 4-117 (129)
58 TIGR00586 mutt mutator mutT pr 99.7 5.1E-17 1.1E-21 109.8 11.8 120 4-150 4-126 (128)
59 TIGR02150 IPP_isom_1 isopenten 99.7 2.7E-17 6E-22 115.3 10.6 113 2-137 25-145 (158)
60 PRK10776 nucleoside triphospha 99.7 5E-17 1.1E-21 109.8 11.5 116 8-150 8-126 (129)
61 PRK05379 bifunctional nicotina 99.7 7E-17 1.5E-21 126.0 13.9 115 6-134 204-322 (340)
62 cd04694 Nudix_Hydrolase_35 Mem 99.7 9.4E-17 2E-21 110.7 12.3 50 11-60 8-61 (143)
63 PRK10729 nudF ADP-ribose pyrop 99.7 1.3E-16 2.9E-21 115.8 13.3 123 7-146 51-183 (202)
64 TIGR00052 nudix-type nucleosid 99.7 9.8E-17 2.1E-21 115.1 11.4 117 4-138 43-169 (185)
65 cd03425 MutT_pyrophosphohydrol 99.7 1.4E-16 3.1E-21 106.6 10.5 104 9-136 5-112 (124)
66 cd03676 Nudix_hydrolase_3 Memb 99.7 6.3E-16 1.4E-20 110.7 11.6 120 3-137 31-161 (180)
67 KOG2839 Diadenosine and diphos 99.7 6.4E-16 1.4E-20 103.7 9.6 103 17-136 25-127 (145)
68 cd02883 Nudix_Hydrolase Nudix 99.7 9E-16 2E-20 102.1 9.8 108 10-136 5-114 (123)
69 PRK15009 GDP-mannose pyrophosp 99.7 4.7E-15 1E-19 106.8 13.4 113 15-146 57-178 (191)
70 cd04665 Nudix_Hydrolase_8 Memb 99.6 2.6E-15 5.7E-20 100.2 10.3 101 8-132 3-103 (118)
71 TIGR02705 nudix_YtkD nucleosid 99.6 9.9E-15 2.1E-19 101.4 13.0 106 5-137 24-130 (156)
72 PRK10707 putative NUDIX hydrol 99.6 7.2E-15 1.6E-19 105.8 11.8 112 3-135 29-147 (190)
73 cd04662 Nudix_Hydrolase_5 Memb 99.6 1E-14 2.2E-19 97.7 11.7 44 17-60 16-65 (126)
74 COG2816 NPY1 NTP pyrophosphohy 99.6 8.8E-16 1.9E-20 114.3 7.1 105 8-136 147-252 (279)
75 PRK08999 hypothetical protein; 99.6 8.8E-15 1.9E-19 113.1 11.7 119 5-150 6-127 (312)
76 cd04674 Nudix_Hydrolase_16 Mem 99.6 6.4E-14 1.4E-18 93.3 10.8 51 10-60 9-61 (118)
77 KOG3084 NADH pyrophosphatase I 99.5 4.2E-15 9.1E-20 111.3 4.5 110 5-136 188-300 (345)
78 cd04663 Nudix_Hydrolase_6 Memb 99.5 1.1E-13 2.4E-18 93.0 10.4 41 17-59 15-55 (126)
79 PLN02552 isopentenyl-diphospha 99.5 2.2E-13 4.8E-18 101.3 12.3 59 2-60 54-134 (247)
80 PLN02791 Nudix hydrolase homol 99.5 5.5E-13 1.2E-17 112.2 13.8 142 2-156 30-188 (770)
81 PLN02709 nudix hydrolase 99.5 3.6E-13 7.9E-18 98.3 10.6 109 4-134 32-155 (222)
82 cd03670 ADPRase_NUDT9 ADP-ribo 99.5 5.5E-13 1.2E-17 95.2 10.8 41 17-58 50-90 (186)
83 COG0494 MutT NTP pyrophosphohy 99.4 3E-12 6.4E-17 87.6 11.9 53 8-60 14-69 (161)
84 PLN03143 nudix hydrolase; Prov 99.4 5.1E-12 1.1E-16 95.9 13.1 110 15-137 140-268 (291)
85 KOG0648 Predicted NUDIX hydrol 99.4 5.6E-13 1.2E-17 99.9 6.1 115 6-138 117-235 (295)
86 COG4119 Predicted NTP pyrophos 99.3 4.1E-12 8.9E-17 83.3 6.3 106 27-150 35-151 (161)
87 KOG3041 Nucleoside diphosphate 99.3 9.8E-11 2.1E-15 82.5 11.9 114 7-137 77-197 (225)
88 cd03431 DNA_Glycosylase_C DNA 99.3 2.2E-10 4.7E-15 75.9 12.2 108 8-148 6-116 (118)
89 COG1443 Idi Isopentenyldiphosp 99.1 1E-09 2.3E-14 76.1 7.8 116 2-137 32-156 (185)
90 KOG3069 Peroxisomal NUDIX hydr 98.9 1.4E-08 3E-13 73.8 8.4 43 17-59 59-106 (246)
91 PF14815 NUDIX_4: NUDIX domain 98.8 3.7E-08 8E-13 65.2 7.4 110 8-147 1-113 (114)
92 PLN02839 nudix hydrolase 98.7 1.7E-07 3.6E-12 73.0 11.1 104 16-136 218-329 (372)
93 KOG4195 Transient receptor pot 98.2 3.1E-06 6.7E-11 61.1 4.9 109 18-135 141-257 (275)
94 KOG0142 Isopentenyl pyrophosph 98.0 1.6E-05 3.6E-10 56.6 6.2 134 2-150 51-202 (225)
95 KOG2937 Decapping enzyme compl 97.8 1E-05 2.3E-10 61.7 1.5 45 16-61 95-139 (348)
96 COG4112 Predicted phosphoester 97.2 0.0046 1E-07 42.9 8.7 108 8-134 64-187 (203)
97 PRK10880 adenine DNA glycosyla 97.2 0.0061 1.3E-07 48.1 10.2 107 9-150 235-344 (350)
98 PF13869 NUDIX_2: Nucleotide h 97.2 0.002 4.4E-08 46.0 6.6 53 4-58 43-98 (188)
99 KOG4313 Thiamine pyrophosphoki 96.7 0.0074 1.6E-07 44.8 6.6 103 18-136 150-260 (306)
100 KOG4548 Mitochondrial ribosoma 96.6 0.029 6.4E-07 41.7 9.0 105 18-136 141-249 (263)
101 KOG4432 Uncharacterized NUDIX 96.1 0.025 5.4E-07 43.2 6.4 91 30-136 286-378 (405)
102 KOG1689 mRNA cleavage factor I 95.8 0.033 7.2E-07 39.0 5.5 51 4-56 69-122 (221)
103 PRK13910 DNA glycosylase MutY; 95.5 0.17 3.7E-06 38.9 9.0 27 122-151 256-282 (289)
104 KOG4432 Uncharacterized NUDIX 94.9 0.036 7.8E-07 42.3 3.6 39 30-68 81-121 (405)
105 COG1194 MutY A/G-specific DNA 85.5 2 4.4E-05 33.8 4.9 35 5-39 236-273 (342)
106 KOG1794 N-Acetylglucosamine ki 74.8 3.8 8.1E-05 31.7 3.1 53 6-61 14-66 (336)
107 PF07026 DUF1317: Protein of u 72.0 7.7 0.00017 22.2 3.2 31 17-51 12-42 (60)
108 KOG2937 Decapping enzyme compl 71.6 1.8 4E-05 33.8 0.8 44 17-60 253-296 (348)
109 KOG4485 Uncharacterized conser 68.6 47 0.001 27.6 8.1 103 2-135 51-190 (724)
110 PF14443 DBC1: DBC1 62.6 14 0.0003 24.8 3.5 43 17-59 9-58 (126)
111 PF03487 IL13: Interleukin-13; 58.6 10 0.00022 19.9 1.9 23 33-55 14-36 (43)
112 KOG0648 Predicted NUDIX hydrol 37.4 16 0.00034 28.4 0.8 30 29-59 56-85 (295)
113 PF08915 tRNA-Thr_ED: Archaea- 37.3 38 0.00082 23.2 2.6 47 120-168 72-118 (138)
114 PRK07198 hypothetical protein; 32.9 80 0.0017 25.7 4.1 44 13-58 159-202 (418)
115 PF09505 Dimeth_Pyl: Dimethyla 32.2 30 0.00065 27.3 1.6 30 30-59 402-431 (466)
116 PF14044 NETI: NETI protein 32.1 46 0.001 19.0 1.9 21 36-58 3-23 (57)
117 KOG1202 Animal-type fatty acid 32.1 70 0.0015 30.4 3.9 27 30-62 270-296 (2376)
118 PF12860 PAS_7: PAS fold 31.7 32 0.0007 21.9 1.5 41 8-49 7-47 (115)
119 COG3864 Uncharacterized protei 28.2 61 0.0013 25.6 2.6 42 6-48 344-385 (396)
120 PF10820 DUF2543: Protein of u 27.4 12 0.00026 22.3 -0.9 34 29-62 35-68 (81)
121 COG0828 RpsU Ribosomal protein 26.7 55 0.0012 19.4 1.7 26 32-58 1-29 (67)
122 PF03559 Hexose_dehydrat: NDP- 25.9 82 0.0018 23.2 2.9 40 88-136 151-190 (206)
123 PF15533 Toxin_54: Putative to 24.6 87 0.0019 18.4 2.3 16 27-42 45-60 (66)
124 PF14026 DUF4242: Protein of u 24.2 65 0.0014 19.5 1.8 22 41-62 53-74 (77)
125 PF11152 DUF2930: Protein of u 22.3 73 0.0016 23.2 2.0 36 6-51 93-128 (195)
126 PRK10708 hypothetical protein; 21.7 1.7E+02 0.0037 16.7 3.5 19 15-33 29-48 (62)
127 PF10781 DSRB: Dextransucrase 20.2 1.9E+02 0.0041 16.5 3.5 19 15-33 29-48 (62)
No 1
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.92 E-value=9.3e-24 Score=146.56 Aligned_cols=141 Identities=51% Similarity=1.054 Sum_probs=98.9
Q ss_pred eeeeeEEEEEeeCCcEEEEEecCCCCcEEcCccccCCCCCHHHHHHHHHHHhhCCccc--eeeeecCCceeecCCccccc
Q 030956 3 YAECSVLSMLIYLGQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA--EIIAEVPNWLTYDFPPAVKT 80 (168)
Q Consensus 3 ~r~~~~~~v~~~~~~vLl~~r~~~~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~--~~~~~~~~~~~~~~~~~~~~ 80 (168)
||.++.+++++.++++||++|...++.|.+|||+++.||++.+||+||++||||+.+. .++.......++.+++....
T Consensus 2 ~~~~v~~ii~~~~~~vLL~~r~~~~~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~~l~~~~~~~~y~~~~~~~~ 81 (147)
T cd03671 2 YRPNVGVVLFNEDGKVFVGRRIDTPGAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEIIAEIPDWLRYDLPPELKL 81 (147)
T ss_pred CCceEEEEEEeCCCEEEEEEEcCCCCCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEcCCeeEeeChhhhhc
Confidence 6777777777778999999999866899999999999999999999999999999953 23333333344544432211
Q ss_pred ccccccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcccCChHHHHHHH
Q 030956 81 KVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVM 147 (168)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~l 147 (168)
+.+.+.+..+..++|.+.+........... .+..|+.+++|++++++.++..++...++.+++
T Consensus 82 ---~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~ 144 (147)
T cd03671 82 ---KIWGGRYRGQEQKWFLFRFTGDDSEIDLNA-PEHPEFDEWRWVPLEELPDLIVPFKRPVYEAVL 144 (147)
T ss_pred ---cccCCcCCCEEEEEEEEEecCCCccccCCC-CCCCCEeeEEeCCHHHHHHhchhhhHHHHHHHH
Confidence 233344455667888888875322222211 135689999999999999998765555554443
No 2
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.91 E-value=8.3e-23 Score=143.03 Aligned_cols=146 Identities=40% Similarity=0.781 Sum_probs=103.1
Q ss_pred eeeeeEEEEEeeCCcEEEEEecCCCCcEEcCccccCCCCCHHHHHHHHHHHhhCCcccee--eeecCCceeecCCccccc
Q 030956 3 YAECSVLSMLIYLGQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEI--IAEVPNWLTYDFPPAVKT 80 (168)
Q Consensus 3 ~r~~~~~~v~~~~~~vLl~~r~~~~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~--~~~~~~~~~~~~~~~~~~ 80 (168)
||.++.+++++.++++|+++|...++.|.+|||+++.||++.+||.||++||||+.+..+ +........+.++.....
T Consensus 7 ~~~~v~~~i~~~~g~vLL~~r~~~~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~y~~~~~~~~ 86 (156)
T PRK00714 7 YRPNVGIILLNRQGQVFWGRRIGQGHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVEILAETRDWLRYDLPKRLVR 86 (156)
T ss_pred CCCeEEEEEEecCCEEEEEEEcCCCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccceEEEEEcCCeEEecCcHHHhh
Confidence 677877777777899999999875689999999999999999999999999999986433 222223344444432111
Q ss_pred ccccccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcccCChHHHHHHHHHHHHH
Q 030956 81 KVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPY 153 (168)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~l~~l~~~ 153 (168)
. ....+.++..++|.+............. .+.+|+.+++|++++++.+++.++.+..+.++++.+...
T Consensus 87 ~----~~~~~~~~~~~~fl~~~~~~~~~~~l~~-~~~~E~~~~~W~~~del~~~~~~~~r~~~~~~~~~~~~~ 154 (156)
T PRK00714 87 R----SKGVYRGQKQKWFLLRLTGDDSEINLNT-TSHPEFDAWRWVSYWYPLDQVVPFKRDVYRRVLKEFARL 154 (156)
T ss_pred c----cCCcccCcEEEEEEEEecCCCccccCCC-CCCCCeeeeEeCCHHHHHHhchhhhHHHHHHHHHHHHHh
Confidence 0 1222334556889988865433332211 244699999999999999988776677777777766544
No 3
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.88 E-value=1.5e-21 Score=135.61 Aligned_cols=135 Identities=19% Similarity=0.368 Sum_probs=84.3
Q ss_pred eeeeeEEEEEeeCCcEEEEEecCCCCcEEcCccccCCCCCHHHHHHHHHHHhhCCcc--ceeeeecCCc--eeecCCccc
Q 030956 3 YAECSVLSMLIYLGQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS--AEIIAEVPNW--LTYDFPPAV 78 (168)
Q Consensus 3 ~r~~~~~~v~~~~~~vLl~~r~~~~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~--~~~~~~~~~~--~~~~~~~~~ 78 (168)
++..+.+++++.++++|+++|...++.|.+|||+++.|||+.+||+||++||||+.+ ..+. .+... ..+.+.+..
T Consensus 6 ~~~~v~~vi~~~~~~vLl~~r~~~~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~-~~~~~~~~~~~~~~~~ 84 (148)
T PRK09438 6 RPVSVLVVIYTPDLGVLMLQRADDPDFWQSVTGSLEEGETPAQTAIREVKEETGIDVLAEQLT-LIDCQRSIEYEIFPHW 84 (148)
T ss_pred CceEEEEEEEeCCCeEEEEEecCCCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCcccccee-ecccccccccccchhh
Confidence 444545555556889999998766789999999999999999999999999999986 2221 11110 011110000
Q ss_pred ccccccccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcccCChHHHHHHHHHHHH
Q 030956 79 KTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRP 152 (168)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~l~~l~~ 152 (168)
. +...........++|.+...... . . ..+|+.+++|++++++.++.. .+..+.+++.+..
T Consensus 85 ~----~~~~~~~~~~~~~~f~~~~~~~~-~--~----~~~E~~~~~W~~~~e~~~~~~---~~~~~~~l~~~~~ 144 (148)
T PRK09438 85 R----HRYAPGVTRNTEHWFCLALPHER-P--V----VLTEHLAYQWLDAREAAALTK---SWSNAEAIEQLVI 144 (148)
T ss_pred h----hccccccCCceeEEEEEecCCCC-c--c----ccCcccceeeCCHHHHHHHhc---ChhHHHHHHHHHH
Confidence 0 00001111234567777654321 1 1 223889999999999999875 4555566665543
No 4
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.85 E-value=9.7e-21 Score=130.99 Aligned_cols=130 Identities=18% Similarity=0.298 Sum_probs=81.4
Q ss_pred eeEEEEEeeC-CcEEEEEecCCCCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCccccccccc
Q 030956 6 CSVLSMLIYL-GQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNR 84 (168)
Q Consensus 6 ~~~~~v~~~~-~~vLl~~r~~~~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (168)
++++++++.+ ++|||+++.. ++.|+||||+++.|||+.+||.||++||||+.+..... .. .+.... .
T Consensus 3 ~~gaii~~~~~~~vLLvr~~~-~~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~~~~-~~---~~~~~~-~------ 70 (145)
T cd03672 3 VYGAIILNEDLDKVLLVKGWK-SKSWSFPKGKINKDEDDHDCAIREVYEETGFDISKYID-KD---DYIELI-I------ 70 (145)
T ss_pred eeEEEEEeCCCCEEEEEEecC-CCCEECCCccCCCCcCHHHHHHHHHHHhhCccceeccc-cc---eeeecc-c------
Confidence 4455555544 6999999876 46899999999999999999999999999998643211 11 111000 0
Q ss_pred ccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcccC-------ChHHHHHHHHHHHHHHhh
Q 030956 85 LWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDY-------KRPTYEEVMRTFRPYLNE 156 (168)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~-------~~~~~~~~l~~l~~~l~~ 156 (168)
.....++|.+......... ...+.+|+.+++|++++++.++.... +-....-++.-+.+++++
T Consensus 71 ------~~~~~~~f~~~~~~~~~~~---~~~~~~E~~~~~Wv~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (145)
T cd03672 71 ------RGQNVKLYIVPGVPEDTPF---EPKTRKEISKIEWFDIKDLPTKKNKKIPGLNSNKFFMVIPFIKPLKKWINR 140 (145)
T ss_pred ------CCcEEEEEEEecCCCCccc---CcCChhhhheEEEeeHHHhhhhhhhccccccccceEEEhHHHHHHHHHHHH
Confidence 0112345555432221111 11234689999999999999887542 122334455556666655
No 5
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.85 E-value=3.4e-20 Score=125.77 Aligned_cols=123 Identities=27% Similarity=0.461 Sum_probs=81.0
Q ss_pred eeEEEEEeeC---CcEEEEEecCCCCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCccccccc
Q 030956 6 CSVLSMLIYL---GQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKV 82 (168)
Q Consensus 6 ~~~~~v~~~~---~~vLl~~r~~~~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
+++++++..+ ++|||++|++. +.|.+|||+++.|||+.+||.||++||||+.+..+. .+.. ..+.++..
T Consensus 3 ~a~~ii~~~~~~~~~vLl~~~~~~-~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~~-~~~~-~~~~~~~~----- 74 (131)
T cd03673 3 AAGGVVFRGSDGGIEVLLIHRPRG-DDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGD-PLGT-IRYWFSSS----- 74 (131)
T ss_pred eEEEEEEEccCCCeEEEEEEcCCC-CcccCCCCccCCCCCHHHHHHHHHhhhhCCceEecc-eEEE-EEEeccCC-----
Confidence 4444444443 78999999874 789999999999999999999999999999864332 2211 12222211
Q ss_pred ccccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcccCChHHHHHHHHH
Q 030956 83 NRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRT 149 (168)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~l~~ 149 (168)
+.......++|.+......... .+..|+.+++|+|++++.+.+. .+..+.+++.
T Consensus 75 -----~~~~~~~~~~~~~~~~~~~~~~-----~~~~E~~~~~W~~~~el~~~~~---~~~~~~~l~~ 128 (131)
T cd03673 75 -----GKRVHKTVHWWLMRALGGEFTP-----QPDEEVDEVRWLPPDEARDRLS---YPNDRELLRA 128 (131)
T ss_pred -----CCCcceEEEEEEEEEcCCCccc-----CCCCcEEEEEEcCHHHHHHHcC---CHhHHHHHHH
Confidence 0011234567777765433221 1346889999999999998775 4455555544
No 6
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.84 E-value=3.6e-20 Score=125.34 Aligned_cols=113 Identities=27% Similarity=0.354 Sum_probs=74.8
Q ss_pred eeeeEEEEEeeCCcEEEEEecCC-CCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCccccccc
Q 030956 4 AECSVLSMLIYLGQIFVASRLNV-PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKV 82 (168)
Q Consensus 4 r~~~~~~v~~~~~~vLl~~r~~~-~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
+.++++++++.+++||+++|+.. ++.|.+|||+++.|||+.+||.||++||||+.+... ..+.....+.+. .
T Consensus 2 ~~~~~~~v~~~~~~vLl~~r~~~~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~-~~~~~~~~~~~~--~---- 74 (127)
T cd04670 2 TVGVGGLVLNEKNEVLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFV-SVVGFRHAHPGA--F---- 74 (127)
T ss_pred eeEEEEEEEcCCCeEEEEEccCCCCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCccee-EEEEEEecCCCC--c----
Confidence 45556666667889999987763 589999999999999999999999999999986322 222211111111 0
Q ss_pred ccccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcc
Q 030956 83 NRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV 136 (168)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 136 (168)
.....+|.+.+........ .+.+|..+++|++++++.+...
T Consensus 75 ---------~~~~~~~~~~~~~~~~~~~----~~~~E~~~~~w~~~~el~~~~~ 115 (127)
T cd04670 75 ---------GKSDLYFICRLKPLSFDIN----FDTSEIAAAKWMPLEEYISQPI 115 (127)
T ss_pred ---------CceeEEEEEEEccCcCcCC----CChhhhheeEEEcHHHHhcchh
Confidence 1112456666543221111 2345788999999999977654
No 7
>PLN02325 nudix hydrolase
Probab=99.84 E-value=4.1e-20 Score=127.76 Aligned_cols=115 Identities=18% Similarity=0.244 Sum_probs=73.3
Q ss_pred eEEEEEeeCCcEEEEEecCCC--CcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCccccccccc
Q 030956 7 SVLSMLIYLGQIFVASRLNVP--GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNR 84 (168)
Q Consensus 7 ~~~~v~~~~~~vLl~~r~~~~--g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (168)
++.+++.++++|||++|.+.+ |.|.+|||+++.|||+.+||+||++||||+.+... ..+.. ..+.+....
T Consensus 11 ~v~~vi~~~~~vLL~rr~~~~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~-~~l~~-~~~~~~~~~------ 82 (144)
T PLN02325 11 AVVVFLLKGNSVLLGRRRSSIGDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKI-ELLTV-TNNVFLEEP------ 82 (144)
T ss_pred EEEEEEEcCCEEEEEEecCCCCCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcce-EEEEE-ecceeecCC------
Confidence 345666677899999998643 78999999999999999999999999999996432 21111 111111000
Q ss_pred ccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcc
Q 030956 85 LWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV 136 (168)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 136 (168)
........+|.+........... .+..++.+++|++++++.+.++
T Consensus 83 ----~~~~~i~~~f~~~~~~~~~~~~~---~e~~e~~~~~W~~~d~Lp~~~~ 127 (144)
T PLN02325 83 ----KPSHYVTVFMRAVLADPSQVPQN---LEPEKCYGWDWYEWDNLPEPLF 127 (144)
T ss_pred ----CCcEEEEEEEEEEECCCCCCCCc---CCchhcCceEEEChHHCChhhh
Confidence 00012235565655433211111 2334678899999999987653
No 8
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.84 E-value=8.2e-20 Score=123.29 Aligned_cols=114 Identities=18% Similarity=0.245 Sum_probs=74.9
Q ss_pred eeeeEEEEEeeCCcEEEEEecCC--CCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCcccccc
Q 030956 4 AECSVLSMLIYLGQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTK 81 (168)
Q Consensus 4 r~~~~~~v~~~~~~vLl~~r~~~--~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~ 81 (168)
|.++.+++++.++++|+++|.+. +|.|.+|||+++.||++.+||+||++||||+.+... ..+.. ..+.+.....
T Consensus 2 ~~~~~~~i~~~~~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~-~~~~~-~~~~~~~~~~-- 77 (125)
T cd04679 2 RVGCGAAILRDDGKLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHST-RLLCV-VDHIIEEPPQ-- 77 (125)
T ss_pred ceEEEEEEECCCCEEEEEEecCCCCCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcccc-eEEEE-EeecccCCCC--
Confidence 34445555566789999998753 489999999999999999999999999999996432 22211 1111111100
Q ss_pred cccccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcc
Q 030956 82 VNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV 136 (168)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 136 (168)
.....+|.+........ . .+.+|+.+++|++++++.+.+.
T Consensus 78 ----------~~~~~~f~~~~~~~~~~--~---~~~~E~~~~~W~~~~~l~~~l~ 117 (125)
T cd04679 78 ----------HWVAPVYLAENFSGEPR--L---MEPDKLLELGWFALDALPQPLT 117 (125)
T ss_pred ----------eEEEEEEEEeecCCccc--c---CCCccccEEEEeCHHHCCchhH
Confidence 11235666665433211 1 1335889999999999987653
No 9
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.83 E-value=1e-19 Score=122.91 Aligned_cols=115 Identities=20% Similarity=0.303 Sum_probs=76.8
Q ss_pred EEEEEeeCCcEEEEEecCC--CCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCcccccccccc
Q 030956 8 VLSMLIYLGQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRL 85 (168)
Q Consensus 8 ~~~v~~~~~~vLl~~r~~~--~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (168)
+.+++.+++++||++|++. +|.|.+|||+++.||++.+||.||++||||+.+..+ ..++. ..+.+.....
T Consensus 3 ~~~ii~~~~~vLl~~~~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~-~~~~~-~~~~~~~~~~------ 74 (128)
T cd04684 3 AYAVIPRDGKLLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIG-RRLGS-ASRYFYSPDG------ 74 (128)
T ss_pred eEEEEEeCCEEEEEEccCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeecc-eeeeE-EEEEEECCCC------
Confidence 4566667799999999874 489999999999999999999999999999985432 22221 1111111000
Q ss_pred cCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcc
Q 030956 86 WGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV 136 (168)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 136 (168)
........++|.+........ ......|..+++|++++++.+...
T Consensus 75 --~~~~~~~~~~f~~~~~~~~~~----~~~~~~e~~~~~W~~~~~l~~~~~ 119 (128)
T cd04684 75 --DYDAHHLCVFYDARVVGGALP----VQEPGEDSHGAAWLPLDEAIERLL 119 (128)
T ss_pred --CeeccEEEEEEEEEEecCccc----cCCCCCCceeeEEECHHHhhccCC
Confidence 001123346777777654321 012445788999999999997654
No 10
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.83 E-value=9.6e-20 Score=122.98 Aligned_cols=113 Identities=25% Similarity=0.365 Sum_probs=71.6
Q ss_pred eeEEEEEeeCCcEEEEEecCCCCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCcccccccccc
Q 030956 6 CSVLSMLIYLGQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRL 85 (168)
Q Consensus 6 ~~~~~v~~~~~~vLl~~r~~~~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (168)
++.+++.+.++++||+++...+|.|.+|||+++.|||+.+||.||++||||+.+..+... . ...+.+......
T Consensus 4 ~v~~~i~~~~~~iLL~r~~~~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~-~-~~~~~~~~~~~~----- 76 (125)
T cd04696 4 TVGALIYAPDGRILLVRTTKWRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKFA-M-VQEAIFSEEFHK----- 76 (125)
T ss_pred EEEEEEECCCCCEEEEEccCCCCcEeCCceeccCCCCHHHHHHHHHHHHhCCcccccceE-E-EEEEeccCCCCC-----
Confidence 334344444889999998765689999999999999999999999999999986432111 1 111111111000
Q ss_pred cCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcc
Q 030956 86 WGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV 136 (168)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 136 (168)
........|.+...... . ....|+.+++|+|++++.++..
T Consensus 77 ----~~~~~~~~~~~~~~~~~--~-----~~~~e~~~~~W~~~~el~~~~~ 116 (125)
T cd04696 77 ----PAHFVLFDFFARTDGTE--V-----TPNEEIVEWEWVTPEEALDYPL 116 (125)
T ss_pred ----ccEEEEEEEEEEecCCc--c-----cCCcccceeEEECHHHHhcCCC
Confidence 00111233444443221 1 2335889999999999988764
No 11
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.83 E-value=1.1e-19 Score=123.44 Aligned_cols=118 Identities=32% Similarity=0.577 Sum_probs=81.8
Q ss_pred eeeeeEEEEEeeCCcEEEEEecCCC----CcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCccc
Q 030956 3 YAECSVLSMLIYLGQIFVASRLNVP----GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAV 78 (168)
Q Consensus 3 ~r~~~~~~v~~~~~~vLl~~r~~~~----g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~ 78 (168)
+|+++.++++..++++||++|++.+ +.|.+|||+++.|||+.+||+||+.||||+.+......... .+......
T Consensus 1 ~~~~v~~ii~~~~~~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~~~~~~~--~~~~~~~~ 78 (134)
T PF00293_consen 1 WRRAVGVIIFNEDGKVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVSPLELLGLF--SYPSPSGD 78 (134)
T ss_dssp EEEEEEEEEEETTTEEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEEEEEEEEEE--EEEETTTE
T ss_pred CCCEEEEEEEeCCcEEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccceecccccceee--eecccCCC
Confidence 4666666666667799999999864 89999999999999999999999999999996322121111 22111111
Q ss_pred ccccccccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhccc
Q 030956 79 KTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVD 137 (168)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~ 137 (168)
. .....++|.+........... ...|..+++|++++++.++...
T Consensus 79 ~-----------~~~~~~~~~~~~~~~~~~~~~----~~~e~~~~~W~~~~el~~~~~~ 122 (134)
T PF00293_consen 79 P-----------EGEIVIFFIAELPSEQSEIQP----QDEEISEVKWVPPDELLELLLN 122 (134)
T ss_dssp S-----------SEEEEEEEEEEEEEEESECHT----TTTTEEEEEEEEHHHHHHHHHT
T ss_pred c-----------ccEEEEEEEEEEeCCccccCC----CCccEEEEEEEEHHHhhhchhC
Confidence 0 123456777777655433222 2238999999999999998863
No 12
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.83 E-value=1.7e-19 Score=123.53 Aligned_cols=115 Identities=23% Similarity=0.194 Sum_probs=79.5
Q ss_pred eeeeEEEEEeeCCcEEEEEecCC---CCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCccccc
Q 030956 4 AECSVLSMLIYLGQIFVASRLNV---PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKT 80 (168)
Q Consensus 4 r~~~~~~v~~~~~~vLl~~r~~~---~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
+++++++++..++++|++++... ++.|.+|||+++.||++.+||+||++||||+.+..+...... .+....
T Consensus 2 ~~~v~v~~~~~~~~iLl~~~~~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~----~~~~~~-- 75 (137)
T cd03424 2 PDAVAVLPYDDDGKVVLVRQYRPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDLEKLGSF----YPSPGF-- 75 (137)
T ss_pred CCEEEEEEEcCCCeEEEEEeeecCCCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccceEEEeeE----ecCCcc--
Confidence 45666677777899999987642 368999999999999999999999999999997533322221 111111
Q ss_pred ccccccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcccC
Q 030956 81 KVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDY 138 (168)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~ 138 (168)
.....++|.+.......... ....|+.+++|++++++.+++...
T Consensus 76 ----------~~~~~~~~~~~~~~~~~~~~----~~~~E~~~~~w~~~~el~~~~~~~ 119 (137)
T cd03424 76 ----------SDERIHLFLAEDLSPGEEGL----LDEGEDIEVVLVPLDEALELLADG 119 (137)
T ss_pred ----------cCccEEEEEEEcccccccCC----CCCCCeeEEEEecHHHHHHHHHcC
Confidence 01224567666654332111 234589999999999999988654
No 13
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.83 E-value=8.2e-20 Score=127.82 Aligned_cols=114 Identities=15% Similarity=0.255 Sum_probs=70.3
Q ss_pred EEEeeCCcEEEEEecCC--CCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCcccccccccccC
Q 030956 10 SMLIYLGQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWG 87 (168)
Q Consensus 10 ~v~~~~~~vLl~~r~~~--~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (168)
++...+++||+++|.+. +|.|++|||+++.|||+.+||.||++||||+.+......+-....+.+.......
T Consensus 23 vI~~~~g~VLL~kR~~~~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~------ 96 (159)
T PRK15434 23 IVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGT------ 96 (159)
T ss_pred EEECCCCEEEEEEccCCCCCCcEECCceecCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEeecccccCCC------
Confidence 33344689999999753 3899999999999999999999999999999853111111111122222110000
Q ss_pred CccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhc
Q 030956 88 GEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQA 135 (168)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~ 135 (168)
.........+|.+...... ... ...|+.+++|++++++.+..
T Consensus 97 ~~~~~~i~~~f~~~~~~g~--~~~----~~~E~~~~~W~~~~el~~~~ 138 (159)
T PRK15434 97 DFTTHYVVLGFRLRVAEED--LLL----PDEQHDDYRWLTPDALLASD 138 (159)
T ss_pred ccceEEEEEEEEEEecCCc--ccC----ChHHeeEEEEEeHHHhhhcc
Confidence 0000112345666654322 111 23489999999999998763
No 14
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.83 E-value=2.7e-19 Score=122.12 Aligned_cols=111 Identities=21% Similarity=0.223 Sum_probs=74.9
Q ss_pred eEEEEEeeCCcEEEEEecCC-CCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCcccccccccc
Q 030956 7 SVLSMLIYLGQIFVASRLNV-PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRL 85 (168)
Q Consensus 7 ~~~~v~~~~~~vLl~~r~~~-~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (168)
++.+++.+++++||++|.+. ++.|.+|||+++.||++.+||.||++||||+.+...... . ...+..+....
T Consensus 2 ~v~~ii~~~~~vLlv~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~-~-~~~~~~~~~~~------ 73 (134)
T cd03675 2 TVAAVVERDGRFLLVEEETDGGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTALL-G-IYQWTAPDSDT------ 73 (134)
T ss_pred eEEEEEEECCEEEEEEEccCCCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccceEE-E-EEEeecCCCCe------
Confidence 35677788899999998864 368999999999999999999999999999996422111 1 11221111000
Q ss_pred cCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcc
Q 030956 86 WGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV 136 (168)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 136 (168)
....++|.+.+...... . ...+|+.++.|++++++.++..
T Consensus 74 ------~~~~~~f~~~~~~~~~~--~---~~~~e~~~~~w~~~~el~~~~~ 113 (134)
T cd03675 74 ------TYLRFAFAAELLEHLPD--Q---PLDSGIVRAHWLTLEEILALAA 113 (134)
T ss_pred ------eEEEEEEEEEECCCCCC--C---CCCCCceeeEEEeHHHHHhhhh
Confidence 11224566666543211 1 1335789999999999999874
No 15
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.83 E-value=1.4e-19 Score=122.90 Aligned_cols=109 Identities=25% Similarity=0.388 Sum_probs=71.7
Q ss_pred eeEEEEEeeCCcEEEEEecCC--CCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCcccccccc
Q 030956 6 CSVLSMLIYLGQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVN 83 (168)
Q Consensus 6 ~~~~~v~~~~~~vLl~~r~~~--~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (168)
++.+++++.++++||++|... +|.|.+|||+++.|||+.+||.||++||||+.+..+.........+.+....
T Consensus 3 av~~~i~~~~~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~----- 77 (130)
T cd04681 3 AVGVLILNEDGELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSYLFSLPNTYPYGGME----- 77 (130)
T ss_pred eEEEEEEcCCCcEEEEEecCCCCCCcEeCCceeecCCCCHHHHHHHHHHHHhCCcccceeEEEeecceeeeCCce-----
Confidence 344455566789999998764 4799999999999999999999999999999864332222211111111110
Q ss_pred cccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHH
Q 030956 84 RLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVV 132 (168)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~ 132 (168)
......+|.+.+...... .+..|+.+++|++++++.
T Consensus 78 -------~~~~~~~~~~~~~~~~~~------~~~~e~~~~~W~~~~el~ 113 (130)
T cd04681 78 -------YDTLDLFFVCQVDDKPIV------KAPDDVAELKWVVPQDIE 113 (130)
T ss_pred -------eEEEEEEEEEEeCCCCCc------CChHHhheeEEecHHHCC
Confidence 011124666766533211 133588999999999985
No 16
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.82 E-value=1.9e-19 Score=124.21 Aligned_cols=115 Identities=24% Similarity=0.290 Sum_probs=78.2
Q ss_pred eeeeeEEEEEeeCCcEEEEEecCC--CCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCccccc
Q 030956 3 YAECSVLSMLIYLGQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKT 80 (168)
Q Consensus 3 ~r~~~~~~v~~~~~~vLl~~r~~~--~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
+.+++++++++.++++||+++... ++.|++|||+++.|||+.+||.||++||||+.+..... +.. ....++...
T Consensus 12 ~~~av~~vv~~~~~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~-~~~-~~~~~~~~~-- 87 (142)
T cd04700 12 EARAAGAVILNERNDVLLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKF-LGT-YLGRFDDGV-- 87 (142)
T ss_pred eeeeEEEEEEeCCCcEEEEEEcCCCCCCeEECCceecCCCCCHHHHHHHHHHHhhCceeeccEE-EEE-EEEEcCCCc--
Confidence 445656566666789999988653 48899999999999999999999999999999643322 211 111122111
Q ss_pred ccccccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhccc
Q 030956 81 KVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVD 137 (168)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~ 137 (168)
....++|.+......... ....|+.+++|++++++.+++..
T Consensus 88 -----------~~~~~~f~~~~~~~~~~~-----~~~~E~~~~~w~~~~el~~~~~~ 128 (142)
T cd04700 88 -----------LVLRHVWLAEPEGQTLAP-----KFTDEIAEASFFSREDVAQLYAQ 128 (142)
T ss_pred -----------EEEEEEEEEEecCCcccc-----CCCCCEEEEEEECHHHhhhcccc
Confidence 112356777765332111 12358999999999999998753
No 17
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.82 E-value=3.3e-19 Score=122.79 Aligned_cols=55 Identities=31% Similarity=0.515 Sum_probs=47.8
Q ss_pred eeeEEEEEeeCCcEEEEEecC----CCCcEEcCccccCCCCCHHHHHHHHHHHhhCCcc
Q 030956 5 ECSVLSMLIYLGQIFVASRLN----VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS 59 (168)
Q Consensus 5 ~~~~~~v~~~~~~vLl~~r~~----~~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~ 59 (168)
++++++++.+++++||++|.. .+|.|.+|||+++.|||+.+||.||++||||+.+
T Consensus 4 r~~~~~ii~~~~~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~ 62 (141)
T PRK15472 4 RTIVCPLIQNDGAYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQL 62 (141)
T ss_pred eeEEEEEEecCCEEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCce
Confidence 345667777789999999875 2489999999999999999999999999999985
No 18
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.82 E-value=3.5e-19 Score=121.21 Aligned_cols=120 Identities=26% Similarity=0.367 Sum_probs=76.8
Q ss_pred EeeCCcEEEEEecC-CCCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCcccccccccccCCcc
Q 030956 12 LIYLGQIFVASRLN-VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEW 90 (168)
Q Consensus 12 ~~~~~~vLl~~r~~-~~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (168)
+..++++||++|+. .+|.|.+|||+++.|||+.+||+||++||||+++..+. .... ..+.+......
T Consensus 10 ~~~~~~vLl~~r~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~-~~~~-~~~~~~~~~~~---------- 77 (131)
T cd04695 10 LDKETKVLLLKRVKTLGGFWCHVAGGVEAGETAWQAALRELKEETGISLPELY-NADY-LEQFYEANDNR---------- 77 (131)
T ss_pred cCCCCEEEEEEecCCCCCcEECCcccccCCCCHHHHHHHHHHHHhCCCccccc-cccc-eeeEeecCCce----------
Confidence 34577899999886 35899999999999999999999999999999964331 1111 11112111100
Q ss_pred ccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcccCChHHHHHHHHHHHHH
Q 030956 91 HGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPY 153 (168)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~l~~l~~~ 153 (168)
.....+|.+....... . ....|+.+++|++++++.++.. .+..+.++..+..|
T Consensus 78 -~~~~~~f~~~~~~~~~-~-----~~~~E~~~~~W~~~~e~~~~~~---~~~~~~~~~~~~~~ 130 (131)
T cd04695 78 -ILMAPVFVGFVPPHQE-V-----VLNHEHTEYRWCSFAEALELAP---FPGQRALYDHVWRY 130 (131)
T ss_pred -EEEEEEEEEEecCCCc-c-----ccCchhcccEecCHHHHHHhcC---ChhHHHHHHHHHhh
Confidence 1122455555543211 1 1235889999999999998875 34444555554433
No 19
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.82 E-value=2.6e-19 Score=120.82 Aligned_cols=109 Identities=17% Similarity=0.249 Sum_probs=69.5
Q ss_pred EEEEEeeCCcEEEEEecCCCCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCcccccccccccC
Q 030956 8 VLSMLIYLGQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWG 87 (168)
Q Consensus 8 ~~~v~~~~~~vLl~~r~~~~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (168)
+.+++.+++++|++++.. .+.|.+|||+++.||++.+||.||++||||+.+... ..+.. +.+.+....
T Consensus 4 ~~~vi~~~~~vLlv~~~~-~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~-~~l~~-~~~~~~~~~--------- 71 (125)
T cd04689 4 ARAIVRAGNKVLLARVIG-QPHYFLPGGHVEPGETAENALRRELQEELGVAVSDG-RFLGA-IENQWHEKG--------- 71 (125)
T ss_pred EEEEEEeCCEEEEEEecC-CCCEECCCCcCCCCCCHHHHHHHHHHHHhCceeecc-EEEEE-EeeeeccCC---------
Confidence 446666789999999876 478999999999999999999999999999985432 22211 111111100
Q ss_pred CccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHH
Q 030956 88 GEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVV 132 (168)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~ 132 (168)
.......++|.+........... ....|+.+++|++++++.
T Consensus 72 -~~~~~~~~~f~~~~~~~~~~~~~---~~~~e~~~~~W~~~~el~ 112 (125)
T cd04689 72 -VRTHEINHIFAVESSWLASDGPP---QADEDHLSFSWVPVSDLS 112 (125)
T ss_pred -ceEEEEEEEEEEEcccccccCCc---cCccceEEEEEccHHHcc
Confidence 00011234555555432211111 234568899999999965
No 20
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.82 E-value=3.3e-19 Score=121.40 Aligned_cols=120 Identities=23% Similarity=0.308 Sum_probs=79.9
Q ss_pred eeEEEEEeeCCcEEEEEecCC-CCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCccccccccc
Q 030956 6 CSVLSMLIYLGQIFVASRLNV-PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNR 84 (168)
Q Consensus 6 ~~~~~v~~~~~~vLl~~r~~~-~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (168)
|+.+.+...++++||++|+.. +|.|.+|||+++.||++.+||.||++||||+.+..+...... .+.+.+
T Consensus 2 ~v~i~l~~~~~~vLL~~r~~~~~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~~~l~~~--~~~~~~-------- 71 (131)
T cd03429 2 AVIVLVIDGGDRILLARQPRFPPGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNIRYVGSQ--PWPFPS-------- 71 (131)
T ss_pred eEEEEEEeCCCEEEEEEecCCCCCcCcCCcccccCCCCHHHHHhhhhhhccCceeeeeEEEeec--CCCCCc--------
Confidence 555555555689999999865 489999999999999999999999999999996543222111 111111
Q ss_pred ccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhh---cc--cCChHHHHHHHHH
Q 030956 85 LWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQ---AV--DYKRPTYEEVMRT 149 (168)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~---~~--~~~~~~~~~~l~~ 149 (168)
....+|.+...... .. .+.+|+.+++|+|++++.++ +. +.+.....+++.+
T Consensus 72 --------~~~~~f~~~~~~~~--~~----~~~~E~~~~~w~~~~el~~~~~~~~~~~~~~~~~~~~~~~ 127 (131)
T cd03429 72 --------SLMLGFTAEADSGE--IV----VDDDELEDARWFSRDEVRAAGEGLPELPPPGSIARQLIEA 127 (131)
T ss_pred --------eEEEEEEEEEcCCc--cc----CCchhhhccEeecHHHHhhcccCCccCCCcchHHHHHHHH
Confidence 12356666665321 11 23458899999999999886 21 2234445555544
No 21
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.82 E-value=2e-19 Score=120.19 Aligned_cols=103 Identities=24% Similarity=0.389 Sum_probs=70.9
Q ss_pred EEEEEeeCCcEEEEEecC----CCCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCcccccccc
Q 030956 8 VLSMLIYLGQIFVASRLN----VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVN 83 (168)
Q Consensus 8 ~~~v~~~~~~vLl~~r~~----~~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (168)
+++++.++++|||++|+. .+|.|.+|||+++.||++.+||.||++||||+.+..+..... +.+....
T Consensus 3 v~~vi~~~~~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~----~~~~~~~----- 73 (117)
T cd04691 3 VVGVLFSDDKVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYTYLCS----LYHPTSE----- 73 (117)
T ss_pred EEEEEEECCEEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccceEEEE----EeccCCC-----
Confidence 344555669999999874 348999999999999999999999999999999533322221 1111111
Q ss_pred cccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhc
Q 030956 84 RLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQA 135 (168)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~ 135 (168)
....++|.+....... ..+|..+++|++++++....
T Consensus 74 --------~~~~~~~~~~~~~~~~--------~~~E~~~~~W~~~~~l~~~~ 109 (117)
T cd04691 74 --------LQLLHYYVVTFWQGEI--------PAQEAAEVHWMTANDIVLAS 109 (117)
T ss_pred --------eEEEEEEEEEEecCCC--------CcccccccEEcCHHHcchhh
Confidence 1223566665533221 12588999999999998765
No 22
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.81 E-value=3e-19 Score=120.12 Aligned_cols=107 Identities=28% Similarity=0.434 Sum_probs=73.3
Q ss_pred EEEEEeeCCcEEEEEecCC-----CCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCccccccc
Q 030956 8 VLSMLIYLGQIFVASRLNV-----PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKV 82 (168)
Q Consensus 8 ~~~v~~~~~~vLl~~r~~~-----~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
+++++.+++++||++|.+. +|.|.+|||+++.||++.+||.||++||||+.+.... +.....+.+...
T Consensus 4 ~~~~~~~~g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~--~~~~~~~~~~~~----- 76 (122)
T cd04682 4 ALALLIGDGRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESR--IPWFRVYPSASP----- 76 (122)
T ss_pred EEEEEEcCCEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCcccccc--cceeEecccCCC-----
Confidence 4456666799999999753 4899999999999999999999999999999863211 111112221100
Q ss_pred ccccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhc
Q 030956 83 NRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQA 135 (168)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~ 135 (168)
....++|.+...... ... ...+|+.+++|++++++.+..
T Consensus 77 ---------~~~~~~f~~~~~~~~-~~~----~~~~E~~~~~W~~~~el~~~~ 115 (122)
T cd04682 77 ---------PGTEHVFVVPLTARE-DAI----LFGDEGQALRLMTVEEFLAHE 115 (122)
T ss_pred ---------CceEEEEEEEEecCC-Ccc----ccCchhheeecccHHHHhhcc
Confidence 122466777665432 111 244689999999999997764
No 23
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.81 E-value=3e-19 Score=119.60 Aligned_cols=110 Identities=25% Similarity=0.412 Sum_probs=72.8
Q ss_pred EEEEEeeCCcEEEEEecCC---CCcEEcCccccCCCCCHHHHHHHHHHHhhCCccc--eeeeecCCceeecCCccccccc
Q 030956 8 VLSMLIYLGQIFVASRLNV---PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA--EIIAEVPNWLTYDFPPAVKTKV 82 (168)
Q Consensus 8 ~~~v~~~~~~vLl~~r~~~---~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~--~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
+.+++.++++|||++|.+. +|.|.+|||+++.||++.+||.||++||||+.+. .+... .. ..+.+....
T Consensus 3 v~~vi~~~~~vLL~~r~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~~~~~~~~-~~-~~~~~~~~~---- 76 (120)
T cd04683 3 VYVLLRRDDEVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDLRLA-HT-MHRRTEDIE---- 76 (120)
T ss_pred EEEEEEECCEEEEEEccCCCCCCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccChhheEEE-EE-EEecCCCCc----
Confidence 5566777899999998753 4899999999999999999999999999999864 22111 11 111111100
Q ss_pred ccccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhccc
Q 030956 83 NRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVD 137 (168)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~ 137 (168)
.....+|.+....... .. .+.+|+.+++|+|++++...+.+
T Consensus 77 ---------~~~~~~f~~~~~~~~~--~~---~~~~e~~~~~W~~~~~l~~~~~~ 117 (120)
T cd04683 77 ---------SRIGLFFTVRRWSGEP--RN---CEPDKCAELRWFPLDALPDDTVD 117 (120)
T ss_pred ---------eEEEEEEEEEeecCcc--cc---CCCCcEeeEEEEchHHCcchhcc
Confidence 1123455555432221 11 13357889999999999887654
No 24
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.81 E-value=6e-19 Score=119.69 Aligned_cols=110 Identities=25% Similarity=0.443 Sum_probs=73.9
Q ss_pred cEEEEEecCCCCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCcccccccccccCCccccceEE
Q 030956 17 QIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQK 96 (168)
Q Consensus 17 ~vLl~~r~~~~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (168)
++|+++|++ +.|.+|||+++.|||+.+||+||++||||+.+..+.....+...+.+.... .....+
T Consensus 18 ~vLl~~~~~--~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~------------~~~~~~ 83 (130)
T cd03428 18 EYLLLQASY--GHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLFIVLGFKETLNYQVRG------------KLKTVT 83 (130)
T ss_pred eEEEEEccC--CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhhhhccceeEEEccccC------------cceEEE
Confidence 599999887 889999999999999999999999999999965432221121122221100 122346
Q ss_pred EEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcccCChHHHHHHHHH
Q 030956 97 WFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRT 149 (168)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~l~~ 149 (168)
+|.+...... ... ...|..+++|++++++.+++. .+.++.++.+
T Consensus 84 ~f~~~~~~~~-~~~-----~~~E~~~~~W~~~~e~~~~~~---~~~~~~~~~~ 127 (130)
T cd03428 84 YFLAELRPDV-EVK-----LSEEHQDYRWLPYEEALKLLT---YEDLKAVLDK 127 (130)
T ss_pred EEEEEeCCCC-ccc-----cccceeeEEeecHHHHHHHcC---chhHHHHHHH
Confidence 7777765321 111 115889999999999999875 3445555544
No 25
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.81 E-value=5.7e-19 Score=122.07 Aligned_cols=116 Identities=19% Similarity=0.207 Sum_probs=72.0
Q ss_pred eeEEEEEeeCCcEEEEEecCC--CCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceee-eecCCceeecCCccccccc
Q 030956 6 CSVLSMLIYLGQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEII-AEVPNWLTYDFPPAVKTKV 82 (168)
Q Consensus 6 ~~~~~v~~~~~~vLl~~r~~~--~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~-~~~~~~~~~~~~~~~~~~~ 82 (168)
++.++|++.+++||+++|.+. +|.|.+|||+++.|||+.+||+||++||||+.+.... ..+.. ..+.+......
T Consensus 14 ~v~~vI~~~~g~vLl~~R~~~p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~l~~-~~~~~~~~~~~-- 90 (144)
T cd03430 14 SIDLIVENEDGQYLLGKRTNRPAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAELLGV-FEHFYDDNFFG-- 90 (144)
T ss_pred EEEEEEEeCCCeEEEEEccCCCCCCcEECCCceecCCCCHHHHHHHHHHHHHCCCcccccceEEEE-EEEEecccccc--
Confidence 334344455799999999753 4899999999999999999999999999999853210 11111 12211111000
Q ss_pred ccccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhh
Q 030956 83 NRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQ 134 (168)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~ 134 (168)
.+........+|.+....... . .+..|+.+++|++++++.+.
T Consensus 91 ----~~~~~~~~~~~~~~~~~~~~~--~----~~~~e~~~~~W~~~~el~~~ 132 (144)
T cd03430 91 ----DDFSTHYVVLGYVLKLSSNEL--L----LPDEQHSEYQWLTSDELLAD 132 (144)
T ss_pred ----CCCccEEEEEEEEEEEcCCcc--c----CCchhccEeEEecHHHHhcC
Confidence 000001123455555543321 1 24458999999999999875
No 26
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.81 E-value=5.3e-19 Score=119.93 Aligned_cols=111 Identities=28% Similarity=0.445 Sum_probs=74.3
Q ss_pred EEEEEee--CCcEEEEEecCC-CCcEEcCccccCCCCCHHHHHHHHHHHhhCCcccee--eeecCCceeecCCccccccc
Q 030956 8 VLSMLIY--LGQIFVASRLNV-PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEI--IAEVPNWLTYDFPPAVKTKV 82 (168)
Q Consensus 8 ~~~v~~~--~~~vLl~~r~~~-~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~--~~~~~~~~~~~~~~~~~~~~ 82 (168)
.+++... ++++||++|.+. +|.|.+|||+++.||++.+||+||++||||+.+..+ +........+.+....
T Consensus 5 ~v~~~~~~~~~~vLL~~r~~~~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~---- 80 (129)
T cd04664 5 LVVPYRLTGEGRVLLLRRSDKYAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLDRGASIAFVEFTDNG---- 80 (129)
T ss_pred EEEEEEeCCCCEEEEEEeCCCCCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhheEEEeecccccccccCCCc----
Confidence 3344445 689999999874 689999999999999999999999999999986322 1111110011111110
Q ss_pred ccccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcc
Q 030956 83 NRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV 136 (168)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 136 (168)
.....++|.+.+.... .. ...+|+.+++|++++++.+++.
T Consensus 81 --------~~~~~~~f~~~~~~~~---~~---~~~~E~~~~~W~~~~e~~~~~~ 120 (129)
T cd04664 81 --------RVWTEHPFAFHLPSDA---VV---TLDWEHDAFEWVPPEEAAALLL 120 (129)
T ss_pred --------eEEEEeEEEEEcCCCC---cc---cCCccccccEecCHHHHHHHHc
Confidence 1123466777765432 11 1335889999999999998875
No 27
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.81 E-value=1.1e-18 Score=119.86 Aligned_cols=119 Identities=21% Similarity=0.208 Sum_probs=71.8
Q ss_pred eeeEEEEEeeC-CcEEEEEecCCCCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecC--Cceeec-CCccccc
Q 030956 5 ECSVLSMLIYL-GQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVP--NWLTYD-FPPAVKT 80 (168)
Q Consensus 5 ~~~~~~v~~~~-~~vLl~~r~~~~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~--~~~~~~-~~~~~~~ 80 (168)
.++++++++.+ ++|||++|.. .|.|.+|||+++.||++.+||.||++||||+.+..+..... ....+. +......
T Consensus 3 ~~~~~~v~~~~~~~vLLv~r~~-~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (138)
T cd03674 3 FTASAFVVNPDRGKVLLTHHRK-LGSWLQPGGHIDPDESLLEAALRELREETGIELLGLRPLSVLVDLDVHPIDGHPKRG 81 (138)
T ss_pred EEEEEEEEeCCCCeEEEEEEcC-CCcEECCceecCCCCCHHHHHHHHHHHHHCCCcccceeccccccceeEeecCCCCCC
Confidence 34444555555 8999999876 58899999999999999999999999999998543211110 000110 0000000
Q ss_pred ccccccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcc
Q 030956 81 KVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV 136 (168)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 136 (168)
.. ........|.+......... ....|..+++|++++++..+..
T Consensus 82 ~~-------~~~~~~~~y~~~~~~~~~~~-----~~~~E~~~~~W~~~~el~~~~~ 125 (138)
T cd03674 82 VP-------GHLHLDLRFLAVAPADDVAP-----PKSDESDAVRWFPLDELASLEL 125 (138)
T ss_pred CC-------CcEEEEEEEEEEccCccccC-----CCCCcccccEEEcHHHhhhccC
Confidence 00 00011234666554332211 1345889999999999977644
No 28
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.81 E-value=4.1e-19 Score=120.76 Aligned_cols=119 Identities=23% Similarity=0.264 Sum_probs=73.1
Q ss_pred eeeeeEEEEEeeCCcEEEEEecCCCCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCccccccc
Q 030956 3 YAECSVLSMLIYLGQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKV 82 (168)
Q Consensus 3 ~r~~~~~~v~~~~~~vLl~~r~~~~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
++.++.++++..++++||++|... +.|.+|||+++.|||+.+||+||++||||+.+........+.....+....
T Consensus 6 ~~~~~~~~v~~~~~~vLL~~r~~~-~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~~~~~~~~~~~~~~~~~---- 80 (132)
T cd04677 6 ILVGAGVILLNEQGEVLLQKRSDT-GDWGLPGGAMELGESLEETARRELKEETGLEVEELELLGVYSGKEFYVKPN---- 80 (132)
T ss_pred cccceEEEEEeCCCCEEEEEecCC-CcEECCeeecCCCCCHHHHHHHHHHHHhCCeeeeeEEEEEecCCceeecCC----
Confidence 345555556666789999998874 789999999999999999999999999999964322211110011111000
Q ss_pred ccccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcc
Q 030956 83 NRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV 136 (168)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 136 (168)
++........+|.+...... .. .+..|..+++|++++++.+++.
T Consensus 81 ----~~~~~~~~~~~~~~~~~~~~--~~----~~~~e~~~~~W~~~~e~~~~~~ 124 (132)
T cd04677 81 ----GDDEQYIVTLYYVTKVFGGK--LV----PDGDETLELKFFSLDELPELIN 124 (132)
T ss_pred ----CCcEEEEEEEEEEEeccCCc--cc----CCCCceeeEEEEChhHCccchh
Confidence 00000111223333332111 11 2445889999999999988764
No 29
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=6.1e-19 Score=120.08 Aligned_cols=115 Identities=22% Similarity=0.354 Sum_probs=73.4
Q ss_pred EEEEEeeCCcEEEEEecCCCCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceee---cCCccccccccc
Q 030956 8 VLSMLIYLGQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTY---DFPPAVKTKVNR 84 (168)
Q Consensus 8 ~~~v~~~~~~vLl~~r~~~~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 84 (168)
+.+++.++++|||+++++ .+.|.+|||+++.||++.+||+||++||||+.+......+.....+ .+++.
T Consensus 3 ~~~ii~~~~~vLLv~~~~-~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~------- 74 (131)
T cd04686 3 VRAIILQGDKILLLYTKR-YGDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEKFGTYTERRPWRKPDA------- 74 (131)
T ss_pred EEEEEEECCEEEEEEEcC-CCcEECccccCCCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeeccccCCCC-------
Confidence 456777789999999886 3689999999999999999999999999999853222222221111 11111
Q ss_pred ccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhc
Q 030956 85 LWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQA 135 (168)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~ 135 (168)
.......++|.+.+........... .+......++|+|++++.+..
T Consensus 75 ----~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~~~~~W~~~~ea~~~~ 120 (131)
T cd04686 75 ----DIFHMISYYYLCEVDAELGAQQLED-YEAELGMKPIWINIHEAIEHN 120 (131)
T ss_pred ----ceeEEEEEEEEEEEcCCcCCcccch-hhHhcCCCcEEecHHHHHHhh
Confidence 1112234788888765432222211 011112358999999998754
No 30
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=9.6e-19 Score=117.30 Aligned_cols=112 Identities=25% Similarity=0.325 Sum_probs=72.0
Q ss_pred EEEEEeeCCcEEEEEecCC--CCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCcccccccccc
Q 030956 8 VLSMLIYLGQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRL 85 (168)
Q Consensus 8 ~~~v~~~~~~vLl~~r~~~--~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (168)
+.+++.+++++||++|++. ++.|.+|||+++.||++.+||.||++||||+.+... ..+.. ..+.+....
T Consensus 3 v~~ii~~~~~vLl~~r~~~~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~-~~~~~-~~~~~~~~~------- 73 (122)
T cd04673 3 VGAVVFRGGRVLLVRRANPPDAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVG-RLLTV-VDVIERDAA------- 73 (122)
T ss_pred EEEEEEECCEEEEEEEcCCCCCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEeeec-eeEEE-EEEeeccCC-------
Confidence 4455666789999999863 478999999999999999999999999999996422 22221 111111100
Q ss_pred cCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcc
Q 030956 86 WGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV 136 (168)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 136 (168)
++.......+.|.+....... .+..|+.+++|++++++.++.+
T Consensus 74 -~~~~~~~~~~~~~~~~~~~~~-------~~~~E~~~~~w~~~~el~~~~~ 116 (122)
T cd04673 74 -GRVEFHYVLIDFLCRYLGGEP-------VAGDDALDARWVPLDELAALSL 116 (122)
T ss_pred -CccceEEEEEEEEEEeCCCcc-------cCCcccceeEEECHHHHhhCcC
Confidence 000001122344555433221 1335889999999999998764
No 31
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=4.8e-19 Score=118.47 Aligned_cols=108 Identities=21% Similarity=0.221 Sum_probs=72.2
Q ss_pred eEEEEEeeCCcEEEEEecCCCCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCccccccccccc
Q 030956 7 SVLSMLIYLGQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLW 86 (168)
Q Consensus 7 ~~~~v~~~~~~vLl~~r~~~~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (168)
+.+++++.++++||++|+.. +.|.+|||+++.|||+.+||.||++||||+.+.......+. ..+.+.. .
T Consensus 3 ~~~~i~~~~~~vLL~~r~~~-~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~-~~~~~~~-~-------- 71 (120)
T cd04680 3 ARAVVTDADGRVLLVRHTYG-PGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAELLGV-YYHSASG-S-------- 71 (120)
T ss_pred eEEEEECCCCeEEEEEECCC-CcEeCCCCcCCCCCCHHHHHHHHHHHHHCCccccccceEEE-EecCCCC-C--------
Confidence 34455566789999998863 58999999999999999999999999999996512122121 1111110 0
Q ss_pred CCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcc
Q 030956 87 GGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV 136 (168)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 136 (168)
....++|.+....... ..+..|+.+++|++++++.+.+.
T Consensus 72 -----~~~~~~f~~~~~~~~~------~~~~~E~~~~~w~~~~~l~~~~~ 110 (120)
T cd04680 72 -----WDHVIVFRARADTQPV------IRPSHEISEARFFPPDALPEPTT 110 (120)
T ss_pred -----ceEEEEEEecccCCCc------cCCcccEEEEEEECHHHCcccCC
Confidence 1123455555543221 12446889999999999998654
No 32
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=9.5e-19 Score=118.57 Aligned_cols=118 Identities=21% Similarity=0.210 Sum_probs=74.4
Q ss_pred eEEEEEeeCCcEEEEEecCC-CCcEEcCccccCCCCCHHHHHHHHHHHhhCCccce--eeeecCCceeecCCcccccccc
Q 030956 7 SVLSMLIYLGQIFVASRLNV-PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE--IIAEVPNWLTYDFPPAVKTKVN 83 (168)
Q Consensus 7 ~~~~v~~~~~~vLl~~r~~~-~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~--~~~~~~~~~~~~~~~~~~~~~~ 83 (168)
++.+++.+++++|+++|.+. .+.|.+|||+++.|||+.+||.||+.||||+.+.. +.... .+.....
T Consensus 3 ~a~~iv~~~~~vLl~~r~~~~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~~~~~~~----~~~~~~~------ 72 (128)
T cd04687 3 SAKAVIIKNDKILLIKHHDDGGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPLLFVR----EYIGHNP------ 72 (128)
T ss_pred EEEEEEEECCEEEEEEEEcCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccCcEEEEE----EEeccCc------
Confidence 35566667899999998753 36899999999999999999999999999999632 21111 1111100
Q ss_pred cccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcc
Q 030956 84 RLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV 136 (168)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 136 (168)
..+.+.......++|.+......... .. ..+..+..+++|++++++.++..
T Consensus 73 ~~~~~~~~~~i~~~f~~~~~~~~~~~-~~-~~~~~~~~~~~W~~~~~l~~~~~ 123 (128)
T cd04687 73 TSELPGHFHQVELMFECKIKSGTPAK-TP-SKPDPNQIGVEWLKLKELGDIPL 123 (128)
T ss_pred cccCCCceeEEEEEEEEEECCCCccc-cc-CCCCCCEEeeEEEcHHHhCcccc
Confidence 00001111223466777765433211 11 12334556899999999988764
No 33
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.80 E-value=1.6e-18 Score=118.13 Aligned_cols=116 Identities=22% Similarity=0.356 Sum_probs=76.2
Q ss_pred eCCcEEEEEecCC-CCcEEcCccccCCCCCHHHHHHHHHHHhhCCccce-eeeec-CCceeecCCcccccccccccCCcc
Q 030956 14 YLGQIFVASRLNV-PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE-IIAEV-PNWLTYDFPPAVKTKVNRLWGGEW 90 (168)
Q Consensus 14 ~~~~vLl~~r~~~-~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 90 (168)
+++++|+++++.. .|.|.||||+++.|||+.+||.||++||||+.+.. ++... .....+.++.... .+..
T Consensus 11 ~~~~~Llvk~~~~~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~~~i~~~~~~~~~~~~~~~~~-------~~~~ 83 (132)
T cd04661 11 DDTLVLLVQQKVGSQNHWILPQGKREEGETLRQTAERTLKELCGNNLKAKFYGNAPVGFYKYKYPKAVR-------NEGI 83 (132)
T ss_pred cCcEEEEEEeecCCCCeeECCcccccCCCCHHHHHHHHHHHhhCCCceEEEEEecCcEEEEEecCcccc-------cccC
Confidence 3567999998763 37899999999999999999999999999997532 11111 1112222222110 0122
Q ss_pred ccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcccCChHHHHHH
Q 030956 91 HGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEV 146 (168)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~ 146 (168)
.+..+++|.+........ ...|+.+++|++++++.+++. ...+..+
T Consensus 84 ~~~~~~~f~~~~~~g~~~-------~~~e~~~~~W~~~~el~~~l~---~~~~~~~ 129 (132)
T cd04661 84 VGAKVFFFKARYMSGQFE-------LSQNQVDFKWLAKEELQKYLN---PPYLQSV 129 (132)
T ss_pred cccEEEEEEEEEecCccc-------cCCCcceeEecCHHHHHhhcC---HHHHHHH
Confidence 234567888877654321 225789999999999999764 4555443
No 34
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=9.2e-19 Score=118.29 Aligned_cols=116 Identities=20% Similarity=0.268 Sum_probs=75.3
Q ss_pred EEEEEeeCCcEEEEEecCCCCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCcccccccccccC
Q 030956 8 VLSMLIYLGQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWG 87 (168)
Q Consensus 8 ~~~v~~~~~~vLl~~r~~~~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (168)
+.+++.++++||++++.+ .+.|.+|||+++.||++.+||.||++||||+.+............+.+....
T Consensus 4 v~~vi~~~~~vLl~~~~~-~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~--------- 73 (126)
T cd04688 4 AAAIIIHNGKLLVQKNPD-ETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRLLGVVENIFTYNGKP--------- 73 (126)
T ss_pred EEEEEEECCEEEEEEeCC-CCeEECCCccccCCCCHHHHHHHHHHHHhCCceecceeeEEEEEeeccCCcc---------
Confidence 445666778999999887 5889999999999999999999999999999853321111111111111111
Q ss_pred CccccceEEEEEEEEccCCccccc-CCCCCCcccceeeEeChhHHHhhcc
Q 030956 88 GEWHGQAQKWFLMKLTNDESEINL-ANGEADPEFAEWKWASPEEVVEQAV 136 (168)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~E~~~~~W~~~~e~~~~~~ 136 (168)
.....++|.+........... ....+..|+.+++|++++++..+..
T Consensus 74 ---~~~~~~~f~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~ 120 (126)
T cd04688 74 ---GHEIEFYYLVTLLDESLYQQDIEILEEEGEKIVFRWIPIDELKEIKL 120 (126)
T ss_pred ---cEEEEEEEEEEeCCCcccccccceeccCCCEEEEEEeeHHHcccCcc
Confidence 122346777777544321100 0012446899999999999986543
No 35
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.80 E-value=1.5e-18 Score=122.65 Aligned_cols=116 Identities=22% Similarity=0.265 Sum_probs=76.8
Q ss_pred eeeeEEEEEeeCCcEEEEEecC----CCCcEEcC-ccccCCCCCHHHHHHHHHHHhhCCccceeeeecC-CceeecCCcc
Q 030956 4 AECSVLSMLIYLGQIFVASRLN----VPGAWQMP-QGGIEDGEDPKLAAMRELREETGIVSAEIIAEVP-NWLTYDFPPA 77 (168)
Q Consensus 4 r~~~~~~v~~~~~~vLl~~r~~----~~g~w~lP-~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~-~~~~~~~~~~ 77 (168)
|+++.+++++.++++|+.+|++ .||.|.+| ||+++.||++.+||+||++||||+.+......+. ..+...+...
T Consensus 30 ~~~v~v~i~~~~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~ 109 (165)
T cd02885 30 HRAFSVFLFNSKGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDLLELVLPRFRYRAPDDGG 109 (165)
T ss_pred eeEEEEEEEcCCCcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccchhhccceEEEEEEcCCC
Confidence 6666666777789999999885 36889997 8999999999999999999999999643211111 1111111111
Q ss_pred cccccccccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhccc
Q 030956 78 VKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVD 137 (168)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~ 137 (168)
.. .....++|.+...... . .+.+|+.+++|++++++.+++.+
T Consensus 110 ~~-----------~~~i~~~f~~~~~~~~---~----~~~~Ev~~~~w~~~~el~~~~~~ 151 (165)
T cd02885 110 LV-----------EHEIDHVFFARADVTL---I----PNPDEVSEYRWVSLEDLKELVAA 151 (165)
T ss_pred ce-----------eeEEEEEEEEEeCCCC---C----CCccceeEEEEECHHHHHHHHHh
Confidence 10 0112345555543221 1 13358899999999999998854
No 36
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=8e-19 Score=121.34 Aligned_cols=118 Identities=20% Similarity=0.266 Sum_probs=78.3
Q ss_pred eeeeeEEEEEeeC---CcEEEEEecC----CCCcEEc-CccccCCCCCHHHHHHHHHHHhhCCccc--eeeeecCCceee
Q 030956 3 YAECSVLSMLIYL---GQIFVASRLN----VPGAWQM-PQGGIEDGEDPKLAAMRELREETGIVSA--EIIAEVPNWLTY 72 (168)
Q Consensus 3 ~r~~~~~~v~~~~---~~vLl~~r~~----~~g~w~l-P~G~ie~~E~~~eaa~RE~~EEtGi~~~--~~~~~~~~~~~~ 72 (168)
|++++.+.|++.+ +++|+++|+. .+|.|.+ |||+++.|||+.+||+||++||||+.+. .+...... .+
T Consensus 1 ~h~~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~~l~~~~~~--~~ 78 (144)
T cd04692 1 WHRTFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDLIPLGTF--KI 78 (144)
T ss_pred CceEEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChHHeEEeeEE--EE
Confidence 5778777777776 8899999985 3589999 5999999999999999999999999752 22211111 22
Q ss_pred cCC-cccccccccccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcc
Q 030956 73 DFP-PAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV 136 (168)
Q Consensus 73 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 136 (168)
.+. ... .......++|.+.......... .+..|+.+++|++++++.+++.
T Consensus 79 ~~~~~~~----------~~~~~~~~~f~~~~~~~~~~~~----~~~~E~~~~~W~~~~el~~~~~ 129 (144)
T cd04692 79 EYDHIGK----------LIDREFHHVYLYELKVPLEEFT----LQKEEVAGVVLIPLDEFAELLE 129 (144)
T ss_pred eccccCC----------CccceEEEEEEEeccCChhhcC----CChhHhheEEEECHHHHHHHHH
Confidence 111 100 0001123566666643211111 1345899999999999998874
No 37
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=2e-18 Score=116.51 Aligned_cols=121 Identities=22% Similarity=0.343 Sum_probs=76.9
Q ss_pred eeeEEEEEeeCCcEEEEEecCCCCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeec---CC-ceeecCCccccc
Q 030956 5 ECSVLSMLIYLGQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEV---PN-WLTYDFPPAVKT 80 (168)
Q Consensus 5 ~~~~~~v~~~~~~vLl~~r~~~~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~---~~-~~~~~~~~~~~~ 80 (168)
..+.+++.+.++++||++|+.. |.|.+|||+++.||++.+||.||++||||+.+... ..+ .. .....++...
T Consensus 3 ~~v~~ii~~~~~~vLl~~r~~~-~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~-~~~~~~~~~~~~~~~~~~~-- 78 (129)
T cd04676 3 PGVTAVVRDDEGRVLLIRRSDN-GLWALPGGAVEPGESPADTAVREVREETGLDVEVT-GLVGIYTGPVHVVTYPNGD-- 78 (129)
T ss_pred ceEEEEEECCCCeEEEEEecCC-CcEECCeeccCCCCCHHHHHHHHHHHHhCceeEee-EEEEEeecccceeecCCCC--
Confidence 3444444455689999999874 89999999999999999999999999999985322 211 11 0111111111
Q ss_pred ccccccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcccCChHHHHHHH
Q 030956 81 KVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVM 147 (168)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~l 147 (168)
.......+|.+........ .+..|..+++|++++++.++.+ ++..+.++
T Consensus 79 ---------~~~~~~~~~~~~~~~~~~~------~~~~e~~~~~w~~~~el~~~~~---~~~~~~~~ 127 (129)
T cd04676 79 ---------VRQYLDITFRCRVVGGELR------VGDDESLDVAWFDPDGLPPLLM---HPSMRLRI 127 (129)
T ss_pred ---------cEEEEEEEEEEEeeCCeec------CCCCceeEEEEEChhhCccccC---CHhHHHHh
Confidence 0112234555555432211 1335778999999999998876 44544444
No 38
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=1.2e-18 Score=117.33 Aligned_cols=110 Identities=18% Similarity=0.271 Sum_probs=73.7
Q ss_pred EEEEEeeCCcEEEEEecCCCCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCcc-ccccccccc
Q 030956 8 VLSMLIYLGQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPA-VKTKVNRLW 86 (168)
Q Consensus 8 ~~~v~~~~~~vLl~~r~~~~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 86 (168)
+.+++.+++++||++++. .|.|.+|||+++.|||+.+||.||++||||+.+ .+...++......+... ...
T Consensus 5 v~~~i~~~~~vLL~~~~~-~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~-~~~~~~~~~~~~~~~~~~~~~------ 76 (123)
T cd04672 5 VRAAIFKDGKILLVREKS-DGLWSLPGGWADVGLSPAENVVKEVKEETGLDV-KVRKLAAVDDRNKHHPPPQPY------ 76 (123)
T ss_pred EEEEEEECCEEEEEEEcC-CCcEeCCccccCCCCCHHHHHHHHHHHHhCCee-eEeEEEEEeccccccCCCCce------
Confidence 455566679999999887 689999999999999999999999999999985 33333222111111110 000
Q ss_pred CCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhccc
Q 030956 87 GGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVD 137 (168)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~ 137 (168)
.....+|.+....... ....|..+++|++++++.++..+
T Consensus 77 -----~~~~~~f~~~~~~~~~-------~~~~E~~~~~W~~~~el~~l~~~ 115 (123)
T cd04672 77 -----QVYKLFFLCEILGGEF-------KPNIETSEVGFFALDDLPPLSEK 115 (123)
T ss_pred -----EEEEEEEEEEecCCcc-------cCCCceeeeEEECHHHCcccccC
Confidence 1112456666643221 12258899999999999887653
No 39
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=1.6e-18 Score=117.58 Aligned_cols=112 Identities=22% Similarity=0.309 Sum_probs=74.3
Q ss_pred eeEEEEEeeCCcEEEEEecC--CCCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCcccccccc
Q 030956 6 CSVLSMLIYLGQIFVASRLN--VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVN 83 (168)
Q Consensus 6 ~~~~~v~~~~~~vLl~~r~~--~~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (168)
++.+++++.++++|+++|.. .++.|.+|||+++.|||+.+||.||++||||+.+... ..+...... +....
T Consensus 4 ~v~~ii~~~~~~iLl~~r~~~~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~-~~~~~~~~~-~~~~~----- 76 (129)
T cd04678 4 GVGVFVLNPKGKVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGLHIENV-QFLTVTNDV-FEEEG----- 76 (129)
T ss_pred EEEEEEECCCCeEEEEeccCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccce-EEEEEEeEE-eCCCC-----
Confidence 33444455569999999985 3589999999999999999999999999999996432 222221111 11111
Q ss_pred cccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhh
Q 030956 84 RLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQ 134 (168)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~ 134 (168)
......+|.+.........+. .+.+|+.+++|++++++.++
T Consensus 77 -------~~~~~~~~~~~~~~~~~~~~~---~~~~e~~~~~W~~~~~l~~~ 117 (129)
T cd04678 77 -------KHYVTIFVKAEVDDGEAEPNK---MEPEKCEGWEWFDWEELPSV 117 (129)
T ss_pred -------cEEEEEEEEEEeCCCCcccCC---CCCceeCceEEeCHHHCCCc
Confidence 112346677777654322221 13357788999999999985
No 40
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=1.5e-18 Score=116.66 Aligned_cols=107 Identities=21% Similarity=0.346 Sum_probs=71.0
Q ss_pred EEEeeCCcEEEEEecCC-CCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCcccccccccccCC
Q 030956 10 SMLIYLGQIFVASRLNV-PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGG 88 (168)
Q Consensus 10 ~v~~~~~~vLl~~r~~~-~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (168)
+++.+++++||++|.+. .+.|.+|||+++.|||+.+||.||++||||+.+ .+...+.. +.+.+
T Consensus 6 ii~~~~~~vLL~~r~~~~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~-~~~~~~~~---~~~~~------------ 69 (121)
T cd04669 6 VIINDQGEILLIRRIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGLDV-RVEEIFLI---VNQNG------------ 69 (121)
T ss_pred EEEeCCCEEEEEEEecCCCCcEECCceeccCCCCHHHHHHHHHHHhhCeeE-eeeeEEEE---EeeCC------------
Confidence 34444589999998763 378999999999999999999999999999996 33222221 11111
Q ss_pred ccccceEEEEEEEEccCCccccc--CC-CCCCcccceeeEeChhHHHhhcc
Q 030956 89 EWHGQAQKWFLMKLTNDESEINL--AN-GEADPEFAEWKWASPEEVVEQAV 136 (168)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~E~~~~~W~~~~e~~~~~~ 136 (168)
...++|.++.......... .. .....+..+++|++++++.++.+
T Consensus 70 ----~~~~~f~~~~~~g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l~~ 116 (121)
T cd04669 70 ----RTEHYFLARVISGKLGLGVGEEFERQSDDNQYHPVWVDLDQLETIPL 116 (121)
T ss_pred ----cEEEEEEEEEECCeecCCCchhhcccCCCCceEEEEEEHHHcccCCC
Confidence 1136788877654321110 00 01134567889999999998654
No 41
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.79 E-value=1.6e-18 Score=121.55 Aligned_cols=110 Identities=22% Similarity=0.226 Sum_probs=73.0
Q ss_pred eeeEEEEEee-C--CcEEEEEecC----CCCcEEcCccccCCC-CCHHHHHHHHHHHhhCCccceeeeecCCceeecCCc
Q 030956 5 ECSVLSMLIY-L--GQIFVASRLN----VPGAWQMPQGGIEDG-EDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPP 76 (168)
Q Consensus 5 ~~~~~~v~~~-~--~~vLl~~r~~----~~g~w~lP~G~ie~~-E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~ 76 (168)
++++.+++.+ + ++||+++|.. .+|.|.+|||+++.| |++.+||.||++||||+.+..+.........+...
T Consensus 2 ~~av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~- 80 (157)
T cd03426 2 RAAVLVLLVEREGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSVEVLGRLPPYYTRS- 80 (157)
T ss_pred ceEEEEEEEeCCCceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccceEEEEECCCccccC-
Confidence 4455555554 3 5899999986 358999999999999 99999999999999999965332221111011111
Q ss_pred ccccccccccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhc
Q 030956 77 AVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQA 135 (168)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~ 135 (168)
....++|++..... .... .+..|+.+++|+|++++.+..
T Consensus 81 ---------------~~~v~~~~~~~~~~-~~~~----~~~~E~~~~~W~~~~el~~~~ 119 (157)
T cd03426 81 ---------------GFVVTPVVGLVPPP-LPLV----LNPDEVAEVFEVPLSFLLDPA 119 (157)
T ss_pred ---------------CCEEEEEEEEECCC-CCCC----CCHHHhheeEEEcHHHHhCcC
Confidence 11235566665542 1111 133489999999999998864
No 42
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.79 E-value=2e-18 Score=129.40 Aligned_cols=117 Identities=19% Similarity=0.244 Sum_probs=82.1
Q ss_pred EEEEEeeCCcEEEEEecCCC-CcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCccccccccccc
Q 030956 8 VLSMLIYLGQIFVASRLNVP-GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLW 86 (168)
Q Consensus 8 ~~~v~~~~~~vLl~~r~~~~-g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (168)
+++++.+++++||++++..+ |.|.+|||+++.|||+++||.||++||||+++..+...... .+.+++.
T Consensus 135 Viv~V~~~~~iLL~rr~~~~~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~~~~~s~--~~~~p~~--------- 203 (256)
T PRK00241 135 IIVAVRRGDEILLARHPRHRNGVYTVLAGFVEVGETLEQCVAREVMEESGIKVKNLRYVGSQ--PWPFPHS--------- 203 (256)
T ss_pred EEEEEEeCCEEEEEEccCCCCCcEeCcccCCCCCCCHHHHhhhhhhhccCceeeeeEEEEeE--eecCCCe---------
Confidence 44566677899999987644 89999999999999999999999999999997544332221 2233322
Q ss_pred CCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcccCChHHHHHHHHHH
Q 030956 87 GGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTF 150 (168)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~l~~l 150 (168)
..+.|.+...... ... +..|+.+++|++++++..+..+ ..+.+.+++..
T Consensus 204 -------lm~~f~a~~~~~~--~~~----~~~Ei~~a~W~~~del~~lp~~--~sia~~li~~~ 252 (256)
T PRK00241 204 -------LMLGFHADYDSGE--IVF----DPKEIADAQWFRYDELPLLPPS--GTIARRLIEDT 252 (256)
T ss_pred -------EEEEEEEEecCCc--ccC----CcccEEEEEEECHHHCcccCCc--hHHHHHHHHHH
Confidence 1356666664332 111 3358899999999999876543 45666776653
No 43
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=1.5e-18 Score=115.83 Aligned_cols=107 Identities=21% Similarity=0.292 Sum_probs=71.2
Q ss_pred eEEEEEeeCCcEEEEEecCCCCcEEcCccccCCCCCHHHHHHHHHHHhhCCccce--eeeecCCceeecCCccccccccc
Q 030956 7 SVLSMLIYLGQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE--IIAEVPNWLTYDFPPAVKTKVNR 84 (168)
Q Consensus 7 ~~~~v~~~~~~vLl~~r~~~~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 84 (168)
++++++++++++|+++|.. .+.|.+|||++++||++.+||.||++||||+.+.. +.....+ .........
T Consensus 3 ~~~~v~~~~~~vLl~~r~~-~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~~-~~~~~~~~~------ 74 (118)
T cd04690 3 AAALILVRDGRVLLVRKRG-TDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSLEYLGTF-RAPAANEPG------ 74 (118)
T ss_pred EEEEEEecCCeEEEEEECC-CCcEECCCCccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEE-ecccccCCC------
Confidence 3445667788999999876 58899999999999999999999999999998543 3222111 110110000
Q ss_pred ccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhc
Q 030956 85 LWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQA 135 (168)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~ 135 (168)
.....++|.+.... . . ....|+.+++|++++++....
T Consensus 75 ------~~~~~~~f~~~~~~---~--~---~~~~e~~~~~W~~~~e~~~~~ 111 (118)
T cd04690 75 ------VDVRATVYVAELTG---E--P---VPAAEIEEIRWVDYDDPADDR 111 (118)
T ss_pred ------cEEEEEEEEEcccC---C--c---CCCchhhccEEecHHHccccc
Confidence 01223556665543 1 1 233588999999999985544
No 44
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.78 E-value=2.7e-18 Score=117.55 Aligned_cols=107 Identities=24% Similarity=0.377 Sum_probs=69.5
Q ss_pred EEEEeeCCcEEEEEecCC--CCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCccccccccccc
Q 030956 9 LSMLIYLGQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLW 86 (168)
Q Consensus 9 ~~v~~~~~~vLl~~r~~~--~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (168)
.+++.+++++||++|... +|.|.+|||+++.||++.+||+||++||||+.+..+.. +.. ..+......
T Consensus 5 ~~~i~~~~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~-~~~-~~~~~~~~~-------- 74 (137)
T cd03427 5 LCFIKDPDKVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLKL-VGI-IKFPFPGEE-------- 74 (137)
T ss_pred EEEEEECCEEEEEEecCCCCCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecceE-EEE-EEEEcCCCC--------
Confidence 355556699999999874 58899999999999999999999999999998643222 211 122221100
Q ss_pred CCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcc
Q 030956 87 GGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV 136 (168)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 136 (168)
.....++|.+...... .. ...|..+++|++++++.++.+
T Consensus 75 ----~~~~~~~f~~~~~~~~--~~-----~~~e~~~~~W~~~~el~~~~~ 113 (137)
T cd03427 75 ----ERYGVFVFLATEFEGE--PL-----KESEEGILDWFDIDDLPLLPM 113 (137)
T ss_pred ----cEEEEEEEEECCcccc--cC-----CCCccccceEEcHhhcccccC
Confidence 0112234444332221 11 223557899999999987654
No 45
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=3.5e-18 Score=115.14 Aligned_cols=104 Identities=23% Similarity=0.323 Sum_probs=69.5
Q ss_pred EEEEEeeCCcEEEEEecCC--CCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCcccccccccc
Q 030956 8 VLSMLIYLGQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRL 85 (168)
Q Consensus 8 ~~~v~~~~~~vLl~~r~~~--~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (168)
.+++++.++++|+++|.+. ++.|.+|||+++.||++.+||.||++||||+.+... ..+.. .. ...
T Consensus 4 ~~vv~~~~~~vLl~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~-~~~~~--~~-~~~--------- 70 (123)
T cd04671 4 AAVILNNQGEVLLIQEAKRSCRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPT-TLLSV--EE-QGG--------- 70 (123)
T ss_pred EEEEEcCCCEEEEEEecCCCCCCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecc-eEEEE--Ec-cCC---------
Confidence 3344555789999998753 489999999999999999999999999999996422 11111 11 010
Q ss_pred cCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHh
Q 030956 86 WGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVE 133 (168)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~ 133 (168)
....++|.+........... .+..|+.+++|++++++..
T Consensus 71 ------~~~~~~f~a~~~~g~~~~~~---~~~~e~~~~~W~~~~el~~ 109 (123)
T cd04671 71 ------SWFRFVFTGNITGGDLKTEK---EADSESLQARWYSNKDLPL 109 (123)
T ss_pred ------eEEEEEEEEEEeCCeEccCC---CCCcceEEEEEECHHHCCC
Confidence 01135666666543322111 2445778999999999943
No 46
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.77 E-value=6.8e-18 Score=113.54 Aligned_cols=103 Identities=23% Similarity=0.321 Sum_probs=69.0
Q ss_pred CcEEEEEecCCCCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCcccccccccccCCccccceE
Q 030956 16 GQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQ 95 (168)
Q Consensus 16 ~~vLl~~r~~~~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (168)
+++||+++... +.|.+|||+++.|||+.+||+||++||||+........++. ..+.+... +.......
T Consensus 15 ~~vLLv~~~~~-~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~l~~-~~~~~~~~----------~~~~~~~~ 82 (122)
T cd04666 15 VEVLLVTSRRT-GRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRPLGR-FEYRKRSK----------NRPPRCEV 82 (122)
T ss_pred eEEEEEEecCC-CeEECCCCCcCCCCCHHHHHHHHHHHHhCCcccccceEEEE-EEeeecCC----------CCCceEEE
Confidence 57999998763 88999999999999999999999999999985322122221 12222110 00112334
Q ss_pred EEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcc
Q 030956 96 KWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV 136 (168)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 136 (168)
++|.+.+..... . .+..+..+++|++++++.+++.
T Consensus 83 ~~f~~~~~~~~~--~----~~~~e~~~~~W~~~~ea~~~~~ 117 (122)
T cd04666 83 AVFPLEVTEELD--E----WPEMHQRKRKWFSPEEAALLVE 117 (122)
T ss_pred EEEEEEEecccc--C----CcccCceEEEEecHHHHHHhcC
Confidence 677777654321 1 1234678899999999988774
No 47
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=3e-18 Score=113.53 Aligned_cols=99 Identities=24% Similarity=0.423 Sum_probs=70.3
Q ss_pred EEEeeCCcEEEEEecCCCCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCcccccccccccCCc
Q 030956 10 SMLIYLGQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGE 89 (168)
Q Consensus 10 ~v~~~~~~vLl~~r~~~~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (168)
+++.+++++||++|.. |.|.+|||+++.||++.+||.||++||||+.+..+.... .+....
T Consensus 5 ~i~~~~~~vLlv~r~~--~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~----~~~~~~------------- 65 (112)
T cd04667 5 VICRRGGRVLLVRKSG--SRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLYLF----HVDGGS------------- 65 (112)
T ss_pred EEEecCCEEEEEEcCC--CcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccceEEEE----EEeCCC-------------
Confidence 4455678999999876 899999999999999999999999999999864432211 111110
Q ss_pred cccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcc
Q 030956 90 WHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV 136 (168)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 136 (168)
...++|.+.+..... ..+..|+.+++|++++++.++..
T Consensus 66 ---~~~~~f~~~~~~~~~------~~~~~e~~~~~W~~~~el~~~~~ 103 (112)
T cd04667 66 ---TRHHVFVASVPPSAQ------PKPSNEIADCRWLSLDALGDLNA 103 (112)
T ss_pred ---EEEEEEEEEcCCcCC------CCCchheeEEEEecHHHhhhccc
Confidence 112456665443211 12345889999999999998775
No 48
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.77 E-value=8.7e-18 Score=114.73 Aligned_cols=117 Identities=25% Similarity=0.365 Sum_probs=75.1
Q ss_pred eEEEEEeeCCcEEEEEecCC---CCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCcccccccc
Q 030956 7 SVLSMLIYLGQIFVASRLNV---PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVN 83 (168)
Q Consensus 7 ~~~~v~~~~~~vLl~~r~~~---~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (168)
++.+++.++++|||++|+.. +|.|.+|||+++.||++.+||.||++||||+.+... ..+. ...|.+++...
T Consensus 6 ~~~~ii~~~~~vLL~~R~~~~~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~-~~~~-~~~~~~~~~~~---- 79 (135)
T PRK10546 6 VVAAIIERDGKILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIEATVG-EYVA-SHQREVSGRRI---- 79 (135)
T ss_pred EEEEEEecCCEEEEEEccCCCCCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCccccc-eeEE-EEEEecCCcEE----
Confidence 35566677899999998753 489999999999999999999999999999985321 1111 12333332210
Q ss_pred cccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcccCChHHHHHHHHHH
Q 030956 84 RLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTF 150 (168)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~l~~l 150 (168)
..++|.+...... . ...|..+++|++++++.++.+ .+..+.++..+
T Consensus 80 ----------~~~~~~~~~~~~~--~------~~~e~~~~~W~~~~el~~~~~---~~~~~~~l~~~ 125 (135)
T PRK10546 80 ----------HLHAWHVPDFHGE--L------QAHEHQALVWCTPEEALRYPL---APADIPLLEAF 125 (135)
T ss_pred ----------EEEEEEEEEecCc--c------cccccceeEEcCHHHcccCCC---CcCcHHHHHHH
Confidence 1233433332111 1 113567899999999998765 33334444443
No 49
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=2.5e-18 Score=116.38 Aligned_cols=109 Identities=21% Similarity=0.336 Sum_probs=69.8
Q ss_pred eEEEEEeeCCcEEEEEecC----CCCcEEcC-ccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCcccccc
Q 030956 7 SVLSMLIYLGQIFVASRLN----VPGAWQMP-QGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTK 81 (168)
Q Consensus 7 ~~~~v~~~~~~vLl~~r~~----~~g~w~lP-~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~ 81 (168)
+.+++++.+++|||++|+. .+|.|++| ||+++.||++ +||+||++||||+.+... . +....++.+....
T Consensus 3 v~v~~~~~~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~-~-~~~~~~~~~~~~~--- 76 (127)
T cd04693 3 VHVCIFNSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFS-E-LRPLFRYFFEAEG--- 76 (127)
T ss_pred EEEEEEeCCCeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChh-h-cEEEEEEEeecCC---
Confidence 4445566678999999874 35899998 8999999999 999999999999995311 1 1111122221110
Q ss_pred cccccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhccc
Q 030956 82 VNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVD 137 (168)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~ 137 (168)
...++.+.......... .+.+|+.+++|++++++.+++..
T Consensus 77 ------------~~~~~~~~~~~~~~~~~----~~~~E~~~~~w~~~~el~~~~~~ 116 (127)
T cd04693 77 ------------FDDYYLFYADVEIGKLI----LQKEEVDEVKFVSKDEIDGLIGH 116 (127)
T ss_pred ------------eEEEEEEEecCcccccc----cCHHHhhhEEEeCHHHHHHHHhc
Confidence 01222222222111111 23458899999999999998854
No 50
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.77 E-value=9.4e-18 Score=120.49 Aligned_cols=118 Identities=19% Similarity=0.358 Sum_probs=78.5
Q ss_pred ceeeeeEEEEEeeCCcEEEEEecC----CCCcEEcC-ccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeec--C
Q 030956 2 IYAECSVLSMLIYLGQIFVASRLN----VPGAWQMP-QGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYD--F 74 (168)
Q Consensus 2 ~~r~~~~~~v~~~~~~vLl~~r~~----~~g~w~lP-~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~--~ 74 (168)
++++++.+++++.+++|||++|+. .||.|.+| ||+++.||++.+||+||+.||||+.+..+...+.. ..+. .
T Consensus 32 ~~h~av~v~i~~~~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~~~~~~~~-~~~~~~~ 110 (184)
T PRK03759 32 PLHLAFSCYLFDADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITDLELVLPD-FRYRATD 110 (184)
T ss_pred CeeeEEEEEEEcCCCeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccccccccce-EEEEEec
Confidence 356676666677789999999863 35788876 89999999999999999999999986433222211 1111 1
Q ss_pred CcccccccccccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcccC
Q 030956 75 PPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDY 138 (168)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~ 138 (168)
.+.. ......++|.+.... . .. .+.+|+.+++|+|++++.+++...
T Consensus 111 ~~~~-----------~~~~~~~vf~~~~~~-~--~~----~~~~Ev~~~~W~~~~el~~~i~~~ 156 (184)
T PRK03759 111 PNGI-----------VENEVCPVFAARVTS-A--LQ----PNPDEVMDYQWVDPADLLRAVDAT 156 (184)
T ss_pred CCCc-----------eeeEEEEEEEEEECC-C--CC----CChhHeeeEEEECHHHHHHHHHhC
Confidence 1111 111223466666542 1 11 134588999999999999988644
No 51
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=3.5e-18 Score=116.58 Aligned_cols=119 Identities=27% Similarity=0.378 Sum_probs=76.5
Q ss_pred eeeEEEEEeeCCcEEEEEecCC----CCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCccccc
Q 030956 5 ECSVLSMLIYLGQIFVASRLNV----PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKT 80 (168)
Q Consensus 5 ~~~~~~v~~~~~~vLl~~r~~~----~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
+++.+++++.+++||++++.+. ++.|.+|||+++.||++.+||.||++||||+.+..+...+. ...+.+..
T Consensus 1 ~~~~~~i~~~~g~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~~~~~-~~~~~f~~---- 75 (133)
T cd04685 1 RAARVVLLDPDDRVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLGPPVW-RRDAAFTF---- 75 (133)
T ss_pred CeEEEEEEcCCCeEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCccccccceEE-EEEEEEEe----
Confidence 3556677778899999998752 37899999999999999999999999999998633322211 01111110
Q ss_pred ccccccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhh
Q 030956 81 KVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQ 134 (168)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~ 134 (168)
.+....+..++|.+...............+..+...++|++++++.+.
T Consensus 76 ------~~~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~ 123 (133)
T cd04685 76 ------LGVDGRQEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAAT 123 (133)
T ss_pred ------cCccceeeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhhC
Confidence 011112335788888764322111111112235668899999999886
No 52
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.77 E-value=1.1e-17 Score=119.74 Aligned_cols=125 Identities=19% Similarity=0.274 Sum_probs=77.0
Q ss_pred eeeeeEEEEEeeCCcEEEEEecC----CCCcE-EcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCcc
Q 030956 3 YAECSVLSMLIYLGQIFVASRLN----VPGAW-QMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPA 77 (168)
Q Consensus 3 ~r~~~~~~v~~~~~~vLl~~r~~----~~g~w-~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~ 77 (168)
.++.+.+++++.++++|+.+|.. .+|.| .+|||+++.|||+.+||.||++||||+....+... + .+.+...
T Consensus 36 ~h~~~~v~v~~~~g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~~~~~~-~---~~~~~~~ 111 (180)
T PRK15393 36 RHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGVPFAEH-G---QFYFEDE 111 (180)
T ss_pred ceEEEEEEEECCCCeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCccceec-e---eEEecCC
Confidence 45555556666679999999874 24555 58999999999999999999999999985433211 1 1111111
Q ss_pred cccccccccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcccCChHHHHHHHHHH
Q 030956 78 VKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTF 150 (168)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~l~~l 150 (168)
.. ....++|.+.... ... ....|+.+++|++++++.++...+.+.....+...+
T Consensus 112 ~~------------~~~~~~f~~~~~~---~~~----~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~l~~~l 165 (180)
T PRK15393 112 NC------------RVWGALFSCVSHG---PFA----LQEEEVSEVCWMTPEEITARCDEFTPDSLKALALWL 165 (180)
T ss_pred Cc------------eEEEEEEEEEeCC---CCC----CChHHeeEEEECCHHHHhhhhhhcCccHHHHHHHHH
Confidence 10 0011344443321 111 134589999999999999885433344444443333
No 53
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=5e-18 Score=114.82 Aligned_cols=107 Identities=22% Similarity=0.306 Sum_probs=72.1
Q ss_pred eEEEEEeeCCcEEEEEecC----CCCcEEc-CccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCcccccc
Q 030956 7 SVLSMLIYLGQIFVASRLN----VPGAWQM-PQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTK 81 (168)
Q Consensus 7 ~~~~v~~~~~~vLl~~r~~----~~g~w~l-P~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~ 81 (168)
+.+++++.++++|+++|+. .+|.|++ |||+++.||++.+||+||++||||+.+..+.... .+.+.....
T Consensus 3 ~~v~i~~~~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l~~~~----~~~~~~~~~-- 76 (126)
T cd04697 3 TYIFVFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLTPLG----LFYYDTDGN-- 76 (126)
T ss_pred EEEEEEcCCCeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCccccEEee----EEEecCCCc--
Confidence 3456666789999999874 3588999 5899999999999999999999999965332221 122211110
Q ss_pred cccccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcc
Q 030956 82 VNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV 136 (168)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 136 (168)
....++|.+.... . .. .+.+|+.+++|++++++.+++.
T Consensus 77 ----------~~~~~~f~~~~~~-~--~~----~~~~E~~~~~w~~~~el~~~~~ 114 (126)
T cd04697 77 ----------RVWGKVFSCVYDG-P--LK----LQEEEVEEITWLSINEILQFKE 114 (126)
T ss_pred ----------eEEEEEEEEEECC-C--CC----CCHhHhhheEEcCHHHHHHHhh
Confidence 0112345554432 1 11 1335889999999999999774
No 54
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.76 E-value=2.9e-17 Score=118.04 Aligned_cols=111 Identities=19% Similarity=0.149 Sum_probs=74.4
Q ss_pred eEEEEEeeCCcEEEEEecCC---CCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCcccccccc
Q 030956 7 SVLSMLIYLGQIFVASRLNV---PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVN 83 (168)
Q Consensus 7 ~~~~v~~~~~~vLl~~r~~~---~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (168)
++++.+.+++++||+++... .+.|++|+|.++.||++.+||.||++||||+.+..+.....+.....+.
T Consensus 50 v~v~~~~~~~~vlLvrq~r~~~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l~~l~~~~~~~~~~-------- 121 (185)
T PRK11762 50 VMIVPILDDDTLLLIREYAAGTERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQLTFLKELSLAPSYF-------- 121 (185)
T ss_pred EEEEEEeCCCEEEEEEeecCCCCCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEEecCCCcc--------
Confidence 33344556788999999753 2679999999999999999999999999999975543332221111111
Q ss_pred cccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcccC
Q 030956 84 RLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDY 138 (168)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~ 138 (168)
....++|.+....... . ..+..|..++.|+|++++.+++...
T Consensus 122 --------~~~~~~f~a~~~~~~~----~-~~~e~E~i~~~~~~~~e~~~~~~~g 163 (185)
T PRK11762 122 --------SSKMNIVLAEDLYPER----L-EGDEPEPLEVVRWPLADLDELLARP 163 (185)
T ss_pred --------CcEEEEEEEEcccccc----C-CCCCCceeEEEEEcHHHHHHHHHcC
Confidence 1234566665432211 1 1244567789999999999988654
No 55
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.75 E-value=2.1e-17 Score=114.16 Aligned_cols=113 Identities=27% Similarity=0.414 Sum_probs=72.2
Q ss_pred eeEEEEEeeCCcEEEEEecCCC--CcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCcccccccc
Q 030956 6 CSVLSMLIYLGQIFVASRLNVP--GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVN 83 (168)
Q Consensus 6 ~~~~~v~~~~~~vLl~~r~~~~--g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (168)
.++.+++..+++|||++|.+.| |.|.+|||+++.|||+++||.||++||||+++. ....+. .+..+....
T Consensus 11 ~~v~~~i~~~~~iLLvrR~~~p~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~-~~~~~~---v~~~~~rd~---- 82 (145)
T COG1051 11 VAVGALIVRNGRILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGLRVR-VLELLA---VFDDPGRDP---- 82 (145)
T ss_pred eeeeEEEEeCCEEEEEEecCCCCCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCccc-ceeEEE---EecCCCCCC----
Confidence 3455666777899999999866 789999999999999999999999999999953 222222 122221110
Q ss_pred cccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhccc
Q 030956 84 RLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVD 137 (168)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~ 137 (168)
+. ...+.+|......+. ... .+.++...+.|++++++.....+
T Consensus 83 -----r~-~~v~~~~~~~~~~g~--~~~---~~~~d~~~~~~~~~~~l~~~~~~ 125 (145)
T COG1051 83 -----RG-HHVSFLFFAAEPEGE--LLA---GDGDDAAEVGWFPLDELPELPLP 125 (145)
T ss_pred -----ce-eEEEEEEEEEecCCC--ccc---CChhhHhhcceecHhHccccccc
Confidence 00 011122222222121 111 12247788999999999986543
No 56
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.75 E-value=1.3e-17 Score=113.42 Aligned_cols=100 Identities=26% Similarity=0.389 Sum_probs=70.9
Q ss_pred EEEEEeeCCcEEEEEecCC--CCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCcccccccccc
Q 030956 8 VLSMLIYLGQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRL 85 (168)
Q Consensus 8 ~~~v~~~~~~vLl~~r~~~--~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (168)
+.+++.+++++||++|... .|.|.+|||+++.||++.+||.||++||||+.+. +...+.. +..+..
T Consensus 16 v~~ii~~~~~vLL~kr~~~~~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~~-~~~~~~~---~~~~~~-------- 83 (130)
T cd04511 16 VGCVPEWEGKVLLCRRAIEPRHGFWTLPAGFMENGETTEQGALRETWEEAGARVE-IDGLYAV---YSVPHI-------- 83 (130)
T ss_pred EEEEEecCCEEEEEEecCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCEEE-eeeEEEE---EecCCc--------
Confidence 4455667789999998753 3789999999999999999999999999999853 3222221 111111
Q ss_pred cCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHH
Q 030956 86 WGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVV 132 (168)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~ 132 (168)
....++|.+.+..... ....|..+++|++++++.
T Consensus 84 ------~~~~~~f~~~~~~~~~-------~~~~e~~~~~~~~~~~l~ 117 (130)
T cd04511 84 ------SQVYMFYRARLLDLDF-------APGPESLEVRLFTEEEIP 117 (130)
T ss_pred ------eEEEEEEEEEEcCCcc-------cCCcchhceEEECHHHCC
Confidence 1234678887765332 122477889999999996
No 57
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=2.6e-17 Score=111.28 Aligned_cols=109 Identities=26% Similarity=0.460 Sum_probs=69.3
Q ss_pred EEEEEee-CCcEEEEEecCC----CCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCccccccc
Q 030956 8 VLSMLIY-LGQIFVASRLNV----PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKV 82 (168)
Q Consensus 8 ~~~v~~~-~~~vLl~~r~~~----~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
+.+++.+ ++++||++|... +|.|.+|||+++.||++.+||.||++||||+.+... ........+......
T Consensus 4 v~~vv~~~~~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~-~~~~~~~~~~~~~~~---- 78 (129)
T cd04699 4 VAALIVKDVGRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPF-LRYPSTVTHEDSGVY---- 78 (129)
T ss_pred EEEEEECCCCcEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEEee-eeeeEEEEEcCCCEE----
Confidence 3344444 489999999853 578999999999999999999999999999986432 221111222111100
Q ss_pred ccccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhccc
Q 030956 83 NRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVD 137 (168)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~ 137 (168)
.....+|.+...... . ....|..+++|++++++..+..+
T Consensus 79 ---------~~~~~~~~~~~~~~~----~---~~~~e~~~~~w~~~~el~~~~~~ 117 (129)
T cd04699 79 ---------NVIYLVFVCEALSGA----V---KLSDEHEEYAWVTLEELAILKAD 117 (129)
T ss_pred ---------EEEEEEEEeeecCCc----c---cCChhheEEEEecHHHhhhhhcc
Confidence 011123333332211 1 13347889999999999776654
No 58
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.74 E-value=5.1e-17 Score=109.78 Aligned_cols=120 Identities=19% Similarity=0.238 Sum_probs=76.9
Q ss_pred eeeeEEEEEeeCCcEEEEEecCC---CCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCccccc
Q 030956 4 AECSVLSMLIYLGQIFVASRLNV---PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKT 80 (168)
Q Consensus 4 r~~~~~~v~~~~~~vLl~~r~~~---~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
+..++++++.+++++|+.+|... .|.|.+|||+++.||++.+|+.||+.||||+.+... ..+ ....|.+++..
T Consensus 4 ~~~~~~ii~~~~~~vLl~~R~~~~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~-~~~-~~~~h~~~~~~-- 79 (128)
T TIGR00586 4 QQIAVGIIRNENGEIIITRRADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFS-EFE-KLEYEFYPRHI-- 79 (128)
T ss_pred EEEEEEEEECCCCEEEEEEEeCCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcceee-eEE-EEEEEECCCcE--
Confidence 34444444455679999999863 389999999999999999999999999999985321 111 12334444322
Q ss_pred ccccccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcccCChHHHHHHHHHH
Q 030956 81 KVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTF 150 (168)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~l~~l 150 (168)
...++|.+....... ...+..++.|++++++.+..+ +...+++++.+
T Consensus 80 ------------~~~~~~~~~~~~~~~--------~~~~~~~~~W~~~~~l~~~~~---p~~~~~~~~~~ 126 (128)
T TIGR00586 80 ------------TLWFWLLERWEGGPP--------GKEGQPEEWWVLVGLLADDFF---PAANPVIIKLL 126 (128)
T ss_pred ------------EEEEEEEEEEcCCCc--------CcccccccEEeCHHHCCccCC---CCCCHHHHHHH
Confidence 112344444432211 122456789999999999876 34444555543
No 59
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.74 E-value=2.7e-17 Score=115.35 Aligned_cols=113 Identities=26% Similarity=0.337 Sum_probs=75.5
Q ss_pred ceeeeeEEEEEeeCCcEEEEEecC----CCCcEEcC-ccccCCCCCHHHHHHHHHHHhhCCccceee-eecCCceeec--
Q 030956 2 IYAECSVLSMLIYLGQIFVASRLN----VPGAWQMP-QGGIEDGEDPKLAAMRELREETGIVSAEII-AEVPNWLTYD-- 73 (168)
Q Consensus 2 ~~r~~~~~~v~~~~~~vLl~~r~~----~~g~w~lP-~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~-~~~~~~~~~~-- 73 (168)
++++++.+++++.+++||+.+|+. .||.|++| ||+++.|| .+||+||++||||+.+.... ..+.. ..+.
T Consensus 25 ~~h~~v~v~v~~~~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~~l~~~~~-~~~~~~ 101 (158)
T TIGR02150 25 PLHRAFSVFLFNEEGQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPADDVPLTVLPR-FSYRAR 101 (158)
T ss_pred CeEEEEEEEEEcCCCeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCccccceEEcce-EEEEEe
Confidence 456666767777789999999885 36999997 89999999 49999999999999864321 11111 1111
Q ss_pred CCcccccccccccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhccc
Q 030956 74 FPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVD 137 (168)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~ 137 (168)
+++.. ....++|.+.... .... ...|+.+++|++++++.+++..
T Consensus 102 ~~~g~-------------~~~~~~f~~~~~~---~~~~----~~~Ev~~~~W~~~~el~~~~~~ 145 (158)
T TIGR02150 102 DAWGE-------------HELCPVFFARAPV---PLNP----NPEEVAEYRWVSLEELKEILKA 145 (158)
T ss_pred cCCCc-------------EEEEEEEEEecCC---cccC----ChhHeeeEEEeCHHHHHHHHhc
Confidence 11110 1223455555432 1111 2359999999999999998864
No 60
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.74 E-value=5e-17 Score=109.81 Aligned_cols=116 Identities=28% Similarity=0.423 Sum_probs=74.9
Q ss_pred EEEEEeeCCcEEEEEecCC---CCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCccccccccc
Q 030956 8 VLSMLIYLGQIFVASRLNV---PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNR 84 (168)
Q Consensus 8 ~~~v~~~~~~vLl~~r~~~---~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (168)
++++...+|++|+.+|+.. +|.|.+|||+++.||++.+||.||++||||+.+... ..++ ...|.+++...
T Consensus 8 ~~ii~~~~~~vll~rR~~~~~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~-~~~~-~~~~~~~~~~~----- 80 (129)
T PRK10776 8 VGIIRNPNNEIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHA-TLFE-KLEYEFPDRHI----- 80 (129)
T ss_pred EEEEECCCCEEEEEEecCCCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCceecc-eEEE-EEEeeCCCcEE-----
Confidence 3333444679999999863 489999999999999999999999999999985322 1121 23454543221
Q ss_pred ccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcccCChHHHHHHHHHH
Q 030956 85 LWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTF 150 (168)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~l~~l 150 (168)
...+|.+...... . ...|..+++|++++++....+ +...+++++.+
T Consensus 81 ---------~~~~~~~~~~~~~--~------~~~e~~~~~W~~~~~l~~~~~---p~~~~~~~~~~ 126 (129)
T PRK10776 81 ---------TLWFWLVESWEGE--P------WGKEGQPGRWVSQVALNADEF---PPANEPIIAKL 126 (129)
T ss_pred ---------EEEEEEEEEECCc--c------CCccCCccEEecHHHCccCCC---CcccHHHHHHH
Confidence 1234444332111 1 123667889999999998765 34445555544
No 61
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.74 E-value=7e-17 Score=125.96 Aligned_cols=115 Identities=23% Similarity=0.405 Sum_probs=75.3
Q ss_pred eeEEEEEeeCCcEEEEEecCCC--CcEEcCccccCCCCCHHHHHHHHHHHhhCCcccee--eeecCCceeecCCcccccc
Q 030956 6 CSVLSMLIYLGQIFVASRLNVP--GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEI--IAEVPNWLTYDFPPAVKTK 81 (168)
Q Consensus 6 ~~~~~v~~~~~~vLl~~r~~~~--g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~--~~~~~~~~~~~~~~~~~~~ 81 (168)
.++.+++.++++|||++|.+.+ |.|.+|||+++.|||+.+||+||++||||+.+... ...+.....+.++....
T Consensus 204 vtv~avv~~~g~VLLvrR~~~p~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~l~~~~~~~~~f~~p~r~~-- 281 (340)
T PRK05379 204 VTVDAVVVQSGHVLLVRRRAEPGKGLWALPGGFLEQDETLLDACLRELREETGLKLPEPVLRGSIRDQQVFDHPGRSL-- 281 (340)
T ss_pred eEEEEEEEECCEEEEEEecCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCcccccccceeeeeeEEEcCCCCCC--
Confidence 3455667788999999998643 78999999999999999999999999999985322 11111111222221110
Q ss_pred cccccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhh
Q 030956 82 VNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQ 134 (168)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~ 134 (168)
. .....++|.+.+..... ... ...+|..+++|++++++..+
T Consensus 282 -----~---~~~i~~~f~~~~~~~~~-~~~---~~~de~~~~~W~~~~el~~~ 322 (340)
T PRK05379 282 -----R---GRTITHAFLFEFPAGEL-PRV---KGGDDADKARWVPLAELLAM 322 (340)
T ss_pred -----C---CcEEEEEEEEEecCCcc-Ccc---CCCCceeeEEEEEHHHhhhh
Confidence 0 01234667776654321 111 13357899999999999875
No 62
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.73 E-value=9.4e-17 Score=110.74 Aligned_cols=50 Identities=32% Similarity=0.525 Sum_probs=44.2
Q ss_pred EEeeCCcEEEEEecC----CCCcEEcCccccCCCCCHHHHHHHHHHHhhCCccc
Q 030956 11 MLIYLGQIFVASRLN----VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA 60 (168)
Q Consensus 11 v~~~~~~vLl~~r~~----~~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~ 60 (168)
+++.++++|+++|.. .+|.|.+|||+++.||++.+||+||+.||||+.+.
T Consensus 8 v~~~~~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~ 61 (143)
T cd04694 8 LQSSDQKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLD 61 (143)
T ss_pred EEcCCCEEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCcc
Confidence 345678999999974 35899999999999999999999999999999864
No 63
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.73 E-value=1.3e-16 Score=115.83 Aligned_cols=123 Identities=14% Similarity=0.107 Sum_probs=80.9
Q ss_pred eEEEE-Eee-CCcEEEEEecCCC--------CcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCc
Q 030956 7 SVLSM-LIY-LGQIFVASRLNVP--------GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPP 76 (168)
Q Consensus 7 ~~~~v-~~~-~~~vLl~~r~~~~--------g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~ 76 (168)
+++++ +.. +++|+|+++.+.+ -.|++|+|.++.||++.+||.||+.||||+.+..+.....+..++.+.
T Consensus 51 ~V~il~~~~~~~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~~l~~~~~spg~~- 129 (202)
T PRK10729 51 AAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRTKPVLSYLASPGGT- 129 (202)
T ss_pred eEEEEEEECCCCEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEEEEEEEEEcCCCcC-
Confidence 34344 433 4799999998754 259999999999999999999999999999976554433332222222
Q ss_pred ccccccccccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcccCChHHHHHH
Q 030956 77 AVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEV 146 (168)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~ 146 (168)
.+..++|+++........ .....+..|..++.|+|++++.+++.+......+.+
T Consensus 130 ---------------~e~~~~fla~~~~~~~~~-~~~~~de~E~i~v~~~~~~e~~~~~~~G~i~d~~ti 183 (202)
T PRK10729 130 ---------------SERSSIMVGEVDATTASG-IHGLADENEDIRVHVVSREQAYQWVEEGKIDNAASV 183 (202)
T ss_pred ---------------ceEEEEEEEEEcchhccc-CCCCCCCCCceEEEEEcHHHHHHHHHcCCCCcHHHH
Confidence 233577887763321111 111124567788999999999999865533333333
No 64
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.72 E-value=9.8e-17 Score=115.09 Aligned_cols=117 Identities=16% Similarity=0.193 Sum_probs=77.3
Q ss_pred eeeeEEEEEe-e-CCcEEEEEecCC--------CCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeec
Q 030956 4 AECSVLSMLI-Y-LGQIFVASRLNV--------PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYD 73 (168)
Q Consensus 4 r~~~~~~v~~-~-~~~vLl~~r~~~--------~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~ 73 (168)
++-++.++.. . ++++||+++.+. +..|++|+|.++.||++++||.||+.||||+....+.....+..+.
T Consensus 43 ~~~~v~vl~~~~~~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~~~~~~~~~~~- 121 (185)
T TIGR00052 43 RGNAAAVLLYDPKKDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNLRKLLSFYSSP- 121 (185)
T ss_pred cCCeEEEEEEECCCCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecceEEEEEEEcCC-
Confidence 3333434433 3 478999998752 3579999999999999999999999999999976544332221111
Q ss_pred CCcccccccccccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcccC
Q 030956 74 FPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDY 138 (168)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~ 138 (168)
+. .....++|.+......... . .+..+.|..++.|+|++++.+++.+.
T Consensus 122 ---g~------------~~~~~~~f~a~~~~~~~~~-~-~~~~~~E~ie~~~~~~~e~~~~~~~G 169 (185)
T TIGR00052 122 ---GG------------VTELIHLFIAEVDDNQAAG-I-GGGADEEEIEVLHLVFSQALQWIKEG 169 (185)
T ss_pred ---CC------------CcEEEEEEEEEEchhhcCC-C-CCCCCccceEEEEeCHHHHHHHHHcC
Confidence 11 1233577888765432111 1 11234566788999999999998654
No 65
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.71 E-value=1.4e-16 Score=106.55 Aligned_cols=104 Identities=33% Similarity=0.533 Sum_probs=70.0
Q ss_pred EEEEee-CCcEEEEEecC---CCCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCccccccccc
Q 030956 9 LSMLIY-LGQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNR 84 (168)
Q Consensus 9 ~~v~~~-~~~vLl~~r~~---~~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (168)
++++.+ ++++|+++|+. .+|.|.+|+|+++.+|++.++|.||+.||||+.+... ..+. ...|.+++..
T Consensus 5 ~~~i~~~~~~~Ll~~r~~~~~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~-~~~~-~~~~~~~~~~------ 76 (124)
T cd03425 5 AAIIIDDDGRILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVG-ELLA-TVEHDYPDKR------ 76 (124)
T ss_pred EEEEECCCCEEEEEEeCCCCCCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEecc-ceEE-EEEeeCCCCe------
Confidence 344444 58999999875 3589999999999999999999999999999985432 1111 1233333211
Q ss_pred ccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcc
Q 030956 85 LWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV 136 (168)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 136 (168)
...++|.+....... ...|..++.|++++++.++.+
T Consensus 77 --------~~~~~~~~~~~~~~~--------~~~e~~~~~W~~~~el~~~~~ 112 (124)
T cd03425 77 --------VTLHVFLVELWSGEP--------QLLEHQELRWVPPEELDDLDF 112 (124)
T ss_pred --------EEEEEEEEeeeCCCc--------ccccCceEEEeeHHHcccCCC
Confidence 112445454432211 123678899999999998766
No 66
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.68 E-value=6.3e-16 Score=110.67 Aligned_cols=120 Identities=19% Similarity=0.250 Sum_probs=74.8
Q ss_pred eeeeeEEE-EEe-eC--CcEEEEEecC----CCCcE-EcCccccCCCCCHHHHHHHHHHHhhCCccceee--eecCCcee
Q 030956 3 YAECSVLS-MLI-YL--GQIFVASRLN----VPGAW-QMPQGGIEDGEDPKLAAMRELREETGIVSAEII--AEVPNWLT 71 (168)
Q Consensus 3 ~r~~~~~~-v~~-~~--~~vLl~~r~~----~~g~w-~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~--~~~~~~~~ 71 (168)
+++++.+. ++. .+ +++|+.+|+. .||+| .+|+|+++.||++.+||+||++||||+....+. ..++ ...
T Consensus 31 ~h~~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~~~l~~~g-~~~ 109 (180)
T cd03676 31 VTYGVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQLKPVG-VVS 109 (180)
T ss_pred eEEEEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHHHhhceecc-EEE
Confidence 44554543 333 33 7899999985 47999 599999999999999999999999999864321 1111 112
Q ss_pred ecCCcccccccccccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhccc
Q 030956 72 YDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVD 137 (168)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~ 137 (168)
+.+.... +.......++|.+.+.... ... .+..|+.++.|++++++.+++..
T Consensus 110 ~~~~~~~---------~~~~~e~~~~f~~~~~~~~-~~~----~~~~Ev~~~~~~~~~el~~~l~~ 161 (180)
T cd03676 110 YLREGEA---------GGLQPEVEYVYDLELPPDF-IPA----PQDGEVESFRLLTIDEVLRALKE 161 (180)
T ss_pred EEEEcCC---------CcEeeeEEEEEEEEcCCCC-eeC----CCCCcEeEEEEECHHHHHHHHHc
Confidence 2211000 0111223455555543221 111 24468999999999999998854
No 67
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=99.67 E-value=6.4e-16 Score=103.66 Aligned_cols=103 Identities=25% Similarity=0.402 Sum_probs=67.3
Q ss_pred cEEEEEecCCCCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCcccccccccccCCccccceEE
Q 030956 17 QIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQK 96 (168)
Q Consensus 17 ~vLl~~r~~~~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (168)
+|||+..++.+..|.+|||++|++|+..+||+||++||+|+. ..+...+.....+...... .. ....
T Consensus 25 eVLlvsSs~~~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~-G~l~~~~~g~~~~~~~~~~-~~-----------~k~~ 91 (145)
T KOG2839|consen 25 EVLLVSSSKKPHRWIVPKGGWEPDESVEEAALRETWEEAGVK-GKLGRLLGGFEDFLSKKHR-TK-----------PKGV 91 (145)
T ss_pred EEEEEecCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHhCce-eeeeccccchhhccChhhc-cc-----------ccce
Confidence 799999998777899999999999999999999999999999 4454433322222111111 00 1122
Q ss_pred EEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcc
Q 030956 97 WFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV 136 (168)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 136 (168)
.|.+..... .+.-+ ....++.+.+|+.++|+.+..-
T Consensus 92 ~~~l~v~e~-le~wp---~~~~~~r~r~W~~ledA~~~~~ 127 (145)
T KOG2839|consen 92 MYVLAVTEE-LEDWP---ESEHEFREREWLKLEDAIELCQ 127 (145)
T ss_pred eehhhhhhh-cccCh---hhhcccceeEEeeHHHHHHHHh
Confidence 343333322 11111 1223588999999999999873
No 68
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.66 E-value=9e-16 Score=102.08 Aligned_cols=108 Identities=26% Similarity=0.387 Sum_probs=71.2
Q ss_pred EEEee-CCcEEEEEecCC-CCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCcccccccccccC
Q 030956 10 SMLIY-LGQIFVASRLNV-PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWG 87 (168)
Q Consensus 10 ~v~~~-~~~vLl~~r~~~-~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (168)
+++.+ ++++||++|... +|.|.+|+|+++.+|++.++|.||+.||+|+.+........+...+.....
T Consensus 5 ~i~~~~~~~ill~kr~~~~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~---------- 74 (123)
T cd02883 5 AVILDEDGRVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLRLLGVYEVESPDEGE---------- 74 (123)
T ss_pred EEEECCCCCEEEEEEcCCCCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceeeeEEEEEEeeccCCCc----------
Confidence 44444 489999998873 589999999999999999999999999999985422111111111211111
Q ss_pred CccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcc
Q 030956 88 GEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV 136 (168)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 136 (168)
.....+|.+.+...... .....|....+|++++++.+...
T Consensus 75 ----~~~~~~~~~~~~~~~~~-----~~~~~e~~~~~w~~~~~l~~~~~ 114 (123)
T cd02883 75 ----HAVVFVFLARLVGGEPT-----LLPPDEISEVRWVTLDELPALAL 114 (123)
T ss_pred ----eEEEEEEEEEeCCCCcC-----CCCCCccceEEEEcHHHCccccc
Confidence 12235666666544321 12335778899999999987543
No 69
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=99.65 E-value=4.7e-15 Score=106.77 Aligned_cols=113 Identities=14% Similarity=0.151 Sum_probs=76.0
Q ss_pred CCcEEEEEecCCC---------CcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCcccccccccc
Q 030956 15 LGQIFVASRLNVP---------GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRL 85 (168)
Q Consensus 15 ~~~vLl~~r~~~~---------g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (168)
+++++|+++.+.+ -.|++|+|.++.| ++.+||.||+.||||+....+.....+..+..+.
T Consensus 57 ~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~~~l~~~~~spG~s---------- 125 (191)
T PRK15009 57 KKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEVGEVRKLFELYMSPGGV---------- 125 (191)
T ss_pred CCEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCccceEEEeeEEEcCCccc----------
Confidence 5799999998743 2489999999975 6999999999999999976665544332222222
Q ss_pred cCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcccCChHHHHHH
Q 030956 86 WGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEV 146 (168)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~ 146 (168)
....++|.++..... ..... ..+..|..++.|+|++++.+++.+......+.+
T Consensus 126 ------~e~~~lf~a~~~~~~-~~~~~-~~de~E~iev~~~~~~e~~~~i~~G~i~da~ti 178 (191)
T PRK15009 126 ------TELIHFFIAEYSDSQ-RANAG-GGVEDEDIEVLELPFSQALEMIKTGEIRDGKTV 178 (191)
T ss_pred ------CcEEEEEEEEECchh-cccCC-CCCCCceEEEEEEcHHHHHHHHHcCCCCcHHHH
Confidence 223577877763221 11111 124567889999999999999865433333333
No 70
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.64 E-value=2.6e-15 Score=100.18 Aligned_cols=101 Identities=22% Similarity=0.208 Sum_probs=68.9
Q ss_pred EEEEEeeCCcEEEEEecCCCCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCcccccccccccC
Q 030956 8 VLSMLIYLGQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWG 87 (168)
Q Consensus 8 ~~~v~~~~~~vLl~~r~~~~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (168)
+.+++..++++||+++.. +.|.+|||+++.||++.+||.||++||||+.+..+..... +.++....
T Consensus 3 v~vi~~~~~~vLl~~~~~--~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~~~~l~~----~~~~~~~~-------- 68 (118)
T cd04665 3 VLVICFYDDGLLLVRHKD--RGWEFPGGHVEPGETIEEAARREVWEETGAELGSLTLVGY----YQVDLFES-------- 68 (118)
T ss_pred EEEEEEECCEEEEEEeCC--CEEECCccccCCCCCHHHHHHHHHHHHHCCccCceEEEEE----EEecCCCC--------
Confidence 456666789999999875 6799999999999999999999999999999644322222 11111100
Q ss_pred CccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHH
Q 030956 88 GEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVV 132 (168)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~ 132 (168)
......|.+........ .+..|+....|++.....
T Consensus 69 ----~~~~~~y~a~~~~~~~~------~~~~E~~~~~~~~~~~~~ 103 (118)
T cd04665 69 ----GFETLVYPAVSAQLEEK------ASYLETDGPVLFKNEPEE 103 (118)
T ss_pred ----cEEEEEEEEEEEecccc------cccccccCcEEeccCCcc
Confidence 11235566666543211 234589999999977654
No 71
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.64 E-value=9.9e-15 Score=101.45 Aligned_cols=106 Identities=22% Similarity=0.244 Sum_probs=71.6
Q ss_pred eeeEEEEEeeCCcEEEEEecCCCCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCccccccccc
Q 030956 5 ECSVLSMLIYLGQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNR 84 (168)
Q Consensus 5 ~~~~~~v~~~~~~vLl~~r~~~~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (168)
+..++++...++++|++++.. ..|++|||+++.||++.+||.||++||||+.+..+.....+..+... .
T Consensus 24 ~~~V~ii~~~~~~~LL~~~~~--~~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~~~lg~~~~~~~~---~------ 92 (156)
T TIGR02705 24 PNHVLVIPRYKDQWLLTEHKR--RGLEFPGGKVEPGETSKEAAIREVMEETGAIVKELHYIGQYEVEGES---T------ 92 (156)
T ss_pred CCEEEEEEEECCEEEEEEEcC--CcEECCceecCCCCCHHHHHHHHHHHHhCcEeeeeEEEEEEEecCCC---c------
Confidence 334545555677999998876 45999999999999999999999999999986544333222111111 1
Q ss_pred ccCCccccceEEEEEEEEccCCcccccCCCCCCcccceee-EeChhHHHhhccc
Q 030956 85 LWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWK-WASPEEVVEQAVD 137 (168)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~-W~~~~e~~~~~~~ 137 (168)
....++|.+...... +.+|..+.. +++++++.+.+..
T Consensus 93 -------~~~~~vf~A~~~~~~---------~~~e~~E~~~~~~~~~~~~~~~~ 130 (156)
T TIGR02705 93 -------DFVKDVYFAEVSALE---------SKDDYLETKGPVLLQEIPDIIKA 130 (156)
T ss_pred -------EEEEEEEEEEEeccc---------cCCCceeeEeEEEHHHHHHHHhc
Confidence 122366777776322 114556666 7999999887743
No 72
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=99.63 E-value=7.2e-15 Score=105.81 Aligned_cols=112 Identities=14% Similarity=0.062 Sum_probs=71.0
Q ss_pred eeeeeEEEEEee--CCcEEEEEecC----CCCcEEcCccccCCC-CCHHHHHHHHHHHhhCCccceeeeecCCceeecCC
Q 030956 3 YAECSVLSMLIY--LGQIFVASRLN----VPGAWQMPQGGIEDG-EDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFP 75 (168)
Q Consensus 3 ~r~~~~~~v~~~--~~~vLl~~r~~----~~g~w~lP~G~ie~~-E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~ 75 (168)
++.+++++.+.. ++.+|+.+|.. .+|.|+||||+++.+ |++.+||+||+.||||+....+.........+...
T Consensus 29 ~~~aavvl~l~~~~~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~lg~l~~~~~~~ 108 (190)
T PRK10707 29 QRQAAVLIPIVRRPQPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAVEVIGVLPPVDSST 108 (190)
T ss_pred CCCeEEEEEEEECCCCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccceEEEEEeeeeeccC
Confidence 344555554432 34788888663 348899999999975 68999999999999999965443332221111111
Q ss_pred cccccccccccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhc
Q 030956 76 PAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQA 135 (168)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~ 135 (168)
. .....+++.+.... . . ..+.+|..++.|+|++++.++.
T Consensus 109 ~----------------~~~~~~v~~~~~~~-~--~--~~d~~Ev~~v~~vpl~e~~~~~ 147 (190)
T PRK10707 109 G----------------YQVTPVVGIIPPDL-P--Y--RANEDEVAAVFEMPLAEALHLG 147 (190)
T ss_pred C----------------cEEEEEEEEECCCC-C--C--CCChhhhheEEEEeHHHHhCcc
Confidence 1 11244545443322 1 1 1244689999999999998864
No 73
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.63 E-value=1e-14 Score=97.68 Aligned_cols=44 Identities=41% Similarity=0.723 Sum_probs=38.3
Q ss_pred cEEEEEec------CCCCcEEcCccccCCCCCHHHHHHHHHHHhhCCccc
Q 030956 17 QIFVASRL------NVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA 60 (168)
Q Consensus 17 ~vLl~~r~------~~~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~ 60 (168)
+|||++|. ...+.|++|||+++.||++.+||+||++||||+.+.
T Consensus 16 ~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~ 65 (126)
T cd04662 16 EVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVD 65 (126)
T ss_pred EEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcce
Confidence 59999852 224789999999999999999999999999999854
No 74
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=99.62 E-value=8.8e-16 Score=114.32 Aligned_cols=105 Identities=25% Similarity=0.382 Sum_probs=79.8
Q ss_pred EEEEEeeCCcEEEEEecC-CCCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCccccccccccc
Q 030956 8 VLSMLIYLGQIFVASRLN-VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLW 86 (168)
Q Consensus 8 ~~~v~~~~~~vLl~~r~~-~~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (168)
+++++.+.+++||.++.. .+|+|++-+|.||.|||+++|+.||++||+|+++..+....+. .++|+++.+-
T Consensus 147 vIv~v~~~~~ilLa~~~~h~~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~~vrY~~SQ--PWPfP~SLMi------ 218 (279)
T COG2816 147 VIVAVIRGDEILLARHPRHFPGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVKNVRYVGSQ--PWPFPHSLML------ 218 (279)
T ss_pred EEEEEecCCceeecCCCCCCCcceeeeeecccCCccHHHHHHHHHHHhhCeEEeeeeEEecc--CCCCchhhhh------
Confidence 445555666688888775 4699999999999999999999999999999998877666665 5677776642
Q ss_pred CCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcc
Q 030956 87 GGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV 136 (168)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 136 (168)
-|.+...++.. .. +..|+++++||+.+|...++-
T Consensus 219 ----------gf~aey~sgeI--~~----d~~Eleda~WFs~~evl~~L~ 252 (279)
T COG2816 219 ----------GFMAEYDSGEI--TP----DEGELEDARWFSRDEVLPALP 252 (279)
T ss_pred ----------hheeeeccccc--cC----CcchhhhccccCHhHHhhhcC
Confidence 35555555542 22 225999999999999666553
No 75
>PRK08999 hypothetical protein; Provisional
Probab=99.61 E-value=8.8e-15 Score=113.15 Aligned_cols=119 Identities=24% Similarity=0.329 Sum_probs=75.6
Q ss_pred eeeEEEEEeeCCcEEEEEecCC---CCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCcccccc
Q 030956 5 ECSVLSMLIYLGQIFVASRLNV---PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTK 81 (168)
Q Consensus 5 ~~~~~~v~~~~~~vLl~~r~~~---~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~ 81 (168)
..+++++...++++||.+|... +|+|.+|+|+++.||++.+|+.||++||||+.+..... +. ...|.+++...
T Consensus 6 ~~~~~vi~~~~~~vLL~kR~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~-l~-~~~h~~~~~~~-- 81 (312)
T PRK08999 6 HVAAGVIRDADGRILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGIEVTAARP-LI-TVRHDYPDKRV-- 81 (312)
T ss_pred EEEEEEEECCCCeEEEEEecCCCCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCceeccee-EE-EEEEEcCCCeE--
Confidence 3434344445689999999753 48999999999999999999999999999998542211 11 12344443220
Q ss_pred cccccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcccCChHHHHHHHHHH
Q 030956 82 VNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTF 150 (168)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~l~~l 150 (168)
..++|.+...... . ...|..+++|++++++.++.+ +...++++..+
T Consensus 82 ------------~i~~y~~~~~~~~----~----~~~e~~~~~Wv~~~el~~~~~---~~~~~~i~~~l 127 (312)
T PRK08999 82 ------------RLDVRRVTAWQGE----P----HGREGQPLAWVAPDELAVYPF---PPANQPIVRAL 127 (312)
T ss_pred ------------EEEEEEEEEecCc----c----cCccCCccEEecHHHcccCCC---CcchHHHHHHh
Confidence 1234444332111 1 123667889999999998765 33334444443
No 76
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.56 E-value=6.4e-14 Score=93.33 Aligned_cols=51 Identities=35% Similarity=0.352 Sum_probs=41.1
Q ss_pred EEEeeCCcEEEEEecCC--CCcEEcCccccCCCCCHHHHHHHHHHHhhCCccc
Q 030956 10 SMLIYLGQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA 60 (168)
Q Consensus 10 ~v~~~~~~vLl~~r~~~--~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~ 60 (168)
+++..++++|+++|... .|.|.+|||+++.||++.+||.||++||||+.+.
T Consensus 9 ~vl~~~~~~lL~~r~~~~~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~ 61 (118)
T cd04674 9 ALLPVDDGLLVIRRGIEPGRGKLALPGGFIELGETWQDAVARELLEETGVAVD 61 (118)
T ss_pred EEEEECCCEEEEEeecCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCccc
Confidence 33433456777776653 3899999999999999999999999999999853
No 77
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=99.55 E-value=4.2e-15 Score=111.31 Aligned_cols=110 Identities=24% Similarity=0.370 Sum_probs=72.1
Q ss_pred eeeEEEEEeeCCc-EEEEEecCC-CCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeec-CCcccccc
Q 030956 5 ECSVLSMLIYLGQ-IFVASRLNV-PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYD-FPPAVKTK 81 (168)
Q Consensus 5 ~~~~~~v~~~~~~-vLl~~r~~~-~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~-~~~~~~~~ 81 (168)
++++.+++.++++ .|+.|+..+ +|+|..++|.+|+|||++|||.||++||||+++..+...... .++ ++.+.+..
T Consensus 188 PvVIm~li~~d~~~~LL~R~~r~~~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~~~asQ--PWP~~p~SLMIg 265 (345)
T KOG3084|consen 188 PVVIMLLIDHDGKHALLGRQKRYPPGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVISYVASQ--PWPLMPQSLMIG 265 (345)
T ss_pred CeEEEEEEcCCCCEeeeecccCCCCchhhhhhccCCccccHHHHHHHHHHHHhCceeeeEeeeecC--CCCCCchHHHHH
Confidence 4667777777665 666665554 499999999999999999999999999999998766543332 233 33332211
Q ss_pred cccccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcc
Q 030956 82 VNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV 136 (168)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 136 (168)
+ +.+...+...+. ..+.|.++.+||+-+++.+.+.
T Consensus 266 c-----------------~ala~~~~~I~v---d~dlEleDaqwF~r~ev~~aL~ 300 (345)
T KOG3084|consen 266 C-----------------LALAKLNGKISV---DKDLELEDAQWFDREEVKSALT 300 (345)
T ss_pred H-----------------HHHHhhCCcccc---CcchhhhhcccccHHHHHHHHH
Confidence 1 001111111122 2334899999999999987664
No 78
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=99.54 E-value=1.1e-13 Score=92.96 Aligned_cols=41 Identities=39% Similarity=0.665 Sum_probs=36.5
Q ss_pred cEEEEEecCCCCcEEcCccccCCCCCHHHHHHHHHHHhhCCcc
Q 030956 17 QIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS 59 (168)
Q Consensus 17 ~vLl~~r~~~~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~ 59 (168)
+||+.+.+. +.|.+|||+++.||++.+||.||++||||+.+
T Consensus 15 ~ll~~r~~~--~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~ 55 (126)
T cd04663 15 ELLVFEHPL--AGFQIVKGTVEPGETPEAAALRELQEESGLPS 55 (126)
T ss_pred EEEEEEcCC--CcEECCCccCCCCCCHHHHHHHHHHHHHCCee
Confidence 677776665 55999999999999999999999999999995
No 79
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=99.53 E-value=2.2e-13 Score=101.33 Aligned_cols=59 Identities=22% Similarity=0.245 Sum_probs=45.7
Q ss_pred ceeeeeEEEEEeeCCcEEEEEecC----CCCcEEcC-ccccCCCCC-----------------HHHHHHHHHHHhhCCcc
Q 030956 2 IYAECSVLSMLIYLGQIFVASRLN----VPGAWQMP-QGGIEDGED-----------------PKLAAMRELREETGIVS 59 (168)
Q Consensus 2 ~~r~~~~~~v~~~~~~vLl~~r~~----~~g~w~lP-~G~ie~~E~-----------------~~eaa~RE~~EEtGi~~ 59 (168)
++|+++.++|++.+|++||.+|+. .||+|... +|++..||+ ..+||+||+.|||||..
T Consensus 54 l~Hra~~v~i~n~~g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI~~ 133 (247)
T PLN02552 54 LLHRAFSVFLFNSKYELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGIPA 133 (247)
T ss_pred ceEEEEEEEEEcCCCeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhCCCc
Confidence 567777778888889999999985 46899666 455444322 68999999999999984
Q ss_pred c
Q 030956 60 A 60 (168)
Q Consensus 60 ~ 60 (168)
.
T Consensus 134 ~ 134 (247)
T PLN02552 134 E 134 (247)
T ss_pred c
Confidence 3
No 80
>PLN02791 Nudix hydrolase homolog
Probab=99.50 E-value=5.5e-13 Score=112.23 Aligned_cols=142 Identities=18% Similarity=0.285 Sum_probs=85.6
Q ss_pred ceeeeeEEEEEee-CCcEEEEEecC----CCCcEEc-CccccCCCCCHHHHHHHHHHHhhCCccce--eeeecCCceeec
Q 030956 2 IYAECSVLSMLIY-LGQIFVASRLN----VPGAWQM-PQGGIEDGEDPKLAAMRELREETGIVSAE--IIAEVPNWLTYD 73 (168)
Q Consensus 2 ~~r~~~~~~v~~~-~~~vLl~~r~~----~~g~w~l-P~G~ie~~E~~~eaa~RE~~EEtGi~~~~--~~~~~~~~~~~~ 73 (168)
++|+++.++|++. ++++|+.+|+. +||.|.+ |||+++.||+..+||+||+.||+|+.+.. +.....+.....
T Consensus 30 l~HrAvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l~~~~l~~l~~~~~~~~ 109 (770)
T PLN02791 30 DYHRAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIILPKDAFELLFVFLQECV 109 (770)
T ss_pred CceEEEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCCChhheeeeeeEEEEee
Confidence 4566767677775 68999999985 5799998 69999999999999999999999998421 111111100000
Q ss_pred CCcccccccccccCCcc-ccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhccc-------CC-hHHHH
Q 030956 74 FPPAVKTKVNRLWGGEW-HGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVD-------YK-RPTYE 144 (168)
Q Consensus 74 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~-------~~-~~~~~ 144 (168)
.. .+.+ .....+.|.+............ .+..|+.+++|++++++.+++.. +. ...+.
T Consensus 110 ~~-----------~g~~~e~E~~~VYlv~~~~~~p~~~~~--lq~eEV~~v~wvsl~El~~~l~~~~~~fvP~~~~~~~~ 176 (770)
T PLN02791 110 IN-----------DGKFINNEYNDVYLVTTLDPIPLEAFT--LQESEVSAVKYMSIEEYKSALAKEDPAYVPYDVNGEYG 176 (770)
T ss_pred cc-----------CCCcceeeEEEEEEEEECCCCCcccCC--CChhhhheeEEEcHHHHHHHHhcCCCceeeccccchHH
Confidence 00 0111 0122345555432221111111 13469999999999999977632 21 13455
Q ss_pred HHHHHHHHHHhh
Q 030956 145 EVMRTFRPYLNE 156 (168)
Q Consensus 145 ~~l~~l~~~l~~ 156 (168)
.+...+.+.+..
T Consensus 177 ~~f~~i~~~~~~ 188 (770)
T PLN02791 177 QLFSIIEKRYKV 188 (770)
T ss_pred HHHHHHHHHHhc
Confidence 555555444433
No 81
>PLN02709 nudix hydrolase
Probab=99.49 E-value=3.6e-13 Score=98.27 Aligned_cols=109 Identities=21% Similarity=0.240 Sum_probs=71.7
Q ss_pred eeeeEEEEEeeC-------CcEEEEEecC----CCCcEEcCccccCCCC-CHHHHHHHHHHHhhCCccc--eeeeecCCc
Q 030956 4 AECSVLSMLIYL-------GQIFVASRLN----VPGAWQMPQGGIEDGE-DPKLAAMRELREETGIVSA--EIIAEVPNW 69 (168)
Q Consensus 4 r~~~~~~v~~~~-------~~vLl~~r~~----~~g~w~lP~G~ie~~E-~~~eaa~RE~~EEtGi~~~--~~~~~~~~~ 69 (168)
|+++|.+++... .++|+.+|.. .+|.|.||||+++.++ ++.+||+||+.||+|+... .++..+...
T Consensus 32 r~AAVLv~l~~~~~~~~~~~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~vlg~L~~~ 111 (222)
T PLN02709 32 KSSAVLVCLYQEQREDKNELRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTIISVLEPF 111 (222)
T ss_pred CccEEEEEEeeccCCCCCceEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEEeeecCCe
Confidence 455565555432 2699999886 3599999999999964 7899999999999999853 333333321
Q ss_pred eeecCCcccccccccccCCccccceEEEEEEEEccC-CcccccCCCCCCcccceeeEeChhHHHhh
Q 030956 70 LTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTND-ESEINLANGEADPEFAEWKWASPEEVVEQ 134 (168)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~E~~~~~W~~~~e~~~~ 134 (168)
. ... +...+-|++.+... ..... ....|+.++.|+|++.+.+.
T Consensus 112 ~---t~s---------------g~~V~P~V~~~~~~~~~~~~----~np~EV~~vf~vPL~~ll~~ 155 (222)
T PLN02709 112 V---NKK---------------GMSVAPVIGFLHDKKAFKPL----PNPAEVEEIFDVPLEMFLKD 155 (222)
T ss_pred E---CCC---------------CCEEEEEEEEecCCCCcccc----CChhhhheeEEecHHHHhCC
Confidence 1 111 11235666666431 11111 13359999999999998654
No 82
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=99.48 E-value=5.5e-13 Score=95.23 Aligned_cols=41 Identities=29% Similarity=0.489 Sum_probs=37.6
Q ss_pred cEEEEEecCCCCcEEcCccccCCCCCHHHHHHHHHHHhhCCc
Q 030956 17 QIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIV 58 (168)
Q Consensus 17 ~vLl~~r~~~~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~ 58 (168)
++|+++|+. .|.|.+|||+++.||++.+||.||+.||||+.
T Consensus 50 ~vLl~~r~~-~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~ 90 (186)
T cd03670 50 QFVAIKRPD-SGEWAIPGGMVDPGEKISATLKREFGEEALNS 90 (186)
T ss_pred EEEEEEeCC-CCcCcCCeeeccCCCCHHHHHHHHHHHHHccc
Confidence 588888876 58999999999999999999999999999765
No 83
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=99.44 E-value=3e-12 Score=87.58 Aligned_cols=53 Identities=38% Similarity=0.601 Sum_probs=43.8
Q ss_pred EEEEEeeC--CcEEEEEecCCCCcEEcCccccCCCCCHHH-HHHHHHHHhhCCccc
Q 030956 8 VLSMLIYL--GQIFVASRLNVPGAWQMPQGGIEDGEDPKL-AAMRELREETGIVSA 60 (168)
Q Consensus 8 ~~~v~~~~--~~vLl~~r~~~~g~w~lP~G~ie~~E~~~e-aa~RE~~EEtGi~~~ 60 (168)
+.+++... +++|+.++....+.|.+|||+++.+|++.+ ||+||++||||+...
T Consensus 14 ~~~~~~~~~~~~vl~~~~~~~~~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~ 69 (161)
T COG0494 14 VAVLVGRDGPGEVLLAQRRDDGGLWELPGGKVEPGEELPEEAAARELEEETGLRVK 69 (161)
T ss_pred EEEEEecCCCCEEeEEEccccCCceecCCcccCCCCchHHHHHHHHHHHHhCCeee
Confidence 33444444 789999988844489999999999998888 999999999999865
No 84
>PLN03143 nudix hydrolase; Provisional
Probab=99.42 E-value=5.1e-12 Score=95.93 Aligned_cols=110 Identities=21% Similarity=0.253 Sum_probs=69.0
Q ss_pred CCc--EEEEEecCCC---CcEEcCccccCC-CCCHHHHHHHHHHHhhCCccc--eeeeecCCc------eeecCCccccc
Q 030956 15 LGQ--IFVASRLNVP---GAWQMPQGGIED-GEDPKLAAMRELREETGIVSA--EIIAEVPNW------LTYDFPPAVKT 80 (168)
Q Consensus 15 ~~~--vLl~~r~~~~---g~w~lP~G~ie~-~E~~~eaa~RE~~EEtGi~~~--~~~~~~~~~------~~~~~~~~~~~ 80 (168)
+++ ++|+++.+.+ ..|++|+|.++. +|++.+||+||+.||||+.+. .+....... ..+..+.
T Consensus 140 ~ge~~VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~a~~lv~L~~~~~~~~g~~v~pspG---- 215 (291)
T PLN03143 140 EGETYAVLTEQVRVPVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLKLEDMVDLTAFLDPSTGCRMFPSPG---- 215 (291)
T ss_pred CCCEEEEEEEeEecCCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccccceEEEeeeccccCcCceEEecCC----
Confidence 455 8999998743 469999999997 589999999999999999742 333322110 1111111
Q ss_pred ccccccCCccccceEEEEEEEEccCCccc-----ccCCCCCCcccceeeEeChhHHHhhccc
Q 030956 81 KVNRLWGGEWHGQAQKWFLMKLTNDESEI-----NLANGEADPEFAEWKWASPEEVVEQAVD 137 (168)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~E~~~~~W~~~~e~~~~~~~ 137 (168)
......++|.+......... ......+..|..++.|++++++.++..+
T Consensus 216 ---------~~dE~i~Lfla~~~v~~~~l~~l~~~~~~l~degE~Iev~~vpl~eiw~~~aD 268 (291)
T PLN03143 216 ---------GCDEEISLFLYRGHVDKETIRQLQGKETGLRDHGELIKVHVVPYRELWRMTAD 268 (291)
T ss_pred ---------ccCCeEEEEEEccccchhhhcccccccCCCCCCCcEEEEEEEEHHHHHHHHHh
Confidence 11233456666554332111 1111124567788999999999888743
No 85
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=99.40 E-value=5.6e-13 Score=99.93 Aligned_cols=115 Identities=24% Similarity=0.358 Sum_probs=80.2
Q ss_pred eeEEEEEeeCCcEEEEEecC----CCCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCcccccc
Q 030956 6 CSVLSMLIYLGQIFVASRLN----VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTK 81 (168)
Q Consensus 6 ~~~~~v~~~~~~vLl~~r~~----~~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~ 81 (168)
.+.++|++.+++||+++..+ ..|.|.+|+|.++++|++.++|+||++||||++ ......+.+.-.|...-..
T Consensus 117 gvg~~V~n~~~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid-~ef~eVla~r~~H~~~~~~--- 192 (295)
T KOG0648|consen 117 GVGAFVLNKKKEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGID-TEFVEVLAFRRAHNATFGL--- 192 (295)
T ss_pred eeeeeEecCCceeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhCcc-hhhhhHHHHHhhhcchhhc---
Confidence 33445556677999998654 248899999999999999999999999999997 3333344432233221000
Q ss_pred cccccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcccC
Q 030956 82 VNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDY 138 (168)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~ 138 (168)
.+...|+.|.+.+...+... +..|+...+|+|+++........
T Consensus 193 ----------~ksd~f~~c~L~p~s~~i~~----~~~ei~~~~Wmp~~e~v~qp~~~ 235 (295)
T KOG0648|consen 193 ----------IKSDMFFTCELRPRSLDITK----CKREIEAAAWMPIEEYVSQPLVH 235 (295)
T ss_pred ----------ccccceeEEEeeccccccch----hHHHHHHHhcccHHHhhcccccc
Confidence 02237888988775555444 44588899999999998887643
No 86
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=99.33 E-value=4.1e-12 Score=83.35 Aligned_cols=106 Identities=26% Similarity=0.376 Sum_probs=70.6
Q ss_pred CCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCcccccccccccCCccccceEEEEEEEE----
Q 030956 27 PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKL---- 102 (168)
Q Consensus 27 ~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 102 (168)
.|.|++|+|....||++..||.||..||+||-+.-....++ ++.-+. ++.+..|..+.
T Consensus 35 ~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vdGP~~~lG---~~kQ~G---------------GKvVta~~veae~Dv 96 (161)
T COG4119 35 DGAWSIPKGEYTGGEDPWLAARREFSEEIGICVDGPRIDLG---SLKQSG---------------GKVVTAFGVEAELDV 96 (161)
T ss_pred CCcccccccccCCCcCHHHHHHHHhhhhhceeecCchhhhh---hhccCC---------------CcEEEEEeeeeeeeh
Confidence 38999999999999999999999999999998643222211 111110 11122232222
Q ss_pred ---ccCCcc--cccC--CCCCCcccceeeEeChhHHHhhcccCChHHHHHHHHHH
Q 030956 103 ---TNDESE--INLA--NGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTF 150 (168)
Q Consensus 103 ---~~~~~~--~~~~--~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~l~~l 150 (168)
.+..++ ++++ .-+..+|.+.+-||++.++...+...+++++..+.+++
T Consensus 97 a~~rSntFe~eWPprSG~M~~FPEVDRagWF~l~eAr~Kil~gQRpfldrL~a~~ 151 (161)
T COG4119 97 ADARSNTFELEWPPRSGKMRKFPEVDRAGWFPLAEARTKILKGQRPFLDRLMAHA 151 (161)
T ss_pred hhhhcceeeeecCCCCCccccCcccccccceecHHHHhHHhhccchHHHHHHHHh
Confidence 222222 2222 22577899999999999999888888888888877764
No 87
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=99.29 E-value=9.8e-11 Score=82.54 Aligned_cols=114 Identities=26% Similarity=0.338 Sum_probs=74.6
Q ss_pred eEEEEEeeCCc--EEEEEecCCC-Cc--EEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeec-CCceeecCCccccc
Q 030956 7 SVLSMLIYLGQ--IFVASRLNVP-GA--WQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEV-PNWLTYDFPPAVKT 80 (168)
Q Consensus 7 ~~~~v~~~~~~--vLl~~r~~~~-g~--w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~-~~~~~~~~~~~~~~ 80 (168)
++++++..+|+ ++++++.+.| |. .++|+|-++.||+++.||+||++||||+. ..+...- ..+..+.+.+
T Consensus 77 aIl~il~~dG~~~ivL~kQfRpP~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~-gkv~~~s~~~f~DPGltn---- 151 (225)
T KOG3041|consen 77 AILAILESDGKPYIVLVKQFRPPTGKICIELPAGLIDDGEDFEGAAIRELEEETGYK-GKVDMVSPTVFLDPGLTN---- 151 (225)
T ss_pred EEEEEEecCCcEEEEEEEeecCCCCcEEEEcccccccCCCchHHHHHHHHHHHhCcc-ceeeeccccEEcCCCCCC----
Confidence 34455555776 7788888755 43 69999999999999999999999999999 4332221 1112222221
Q ss_pred ccccccCCccccceEEEEEEEEccCCc-ccccCCCCCCcccceeeEeChhHHHhhccc
Q 030956 81 KVNRLWGGEWHGQAQKWFLMKLTNDES-EINLANGEADPEFAEWKWASPEEVVEQAVD 137 (168)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~ 137 (168)
...+..++.++.... +.++..+-++.|..++.-++..++.+.+.+
T Consensus 152 ------------~~~~iv~v~idg~~pEnqrp~q~ledgEfIev~~i~~~~L~~~~~~ 197 (225)
T KOG3041|consen 152 ------------CNLCIVVVDIDGDVPENQRPVQQLEDGEFIEVFLIPLSELWRELAD 197 (225)
T ss_pred ------------CceEEEEEEecCCCccccCccccCCCCceEEEEEeeHHHHHHHHHh
Confidence 223445555554432 223333346789999999999998877653
No 88
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=99.26 E-value=2.2e-10 Score=75.95 Aligned_cols=108 Identities=18% Similarity=0.294 Sum_probs=72.3
Q ss_pred EEEEEeeCCcEEEEEecCC---CCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCccccccccc
Q 030956 8 VLSMLIYLGQIFVASRLNV---PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNR 84 (168)
Q Consensus 8 ~~~v~~~~~~vLl~~r~~~---~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (168)
+++++.+++++|+.+|+.. .|+|+||+|.++.+|+..++..|++.++.++.... + ....|.|++...
T Consensus 6 ~~~ii~~~~~~ll~kR~~~gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~H~fth~~~----- 75 (118)
T cd03431 6 AVVVIRNDGRVLLEKRPEKGLLAGLWEFPSVEWEEEADGEEALLSALKKALRLSLEP----L-GTVKHTFTHFRL----- 75 (118)
T ss_pred EEEEEecCCeEEEEECCCCCCCCcceeCCCccccCCcCHHHHHHHHHHHHhCccccc----c-eeEEEecCCeEE-----
Confidence 4455555789999999863 48999999999999999999999998887641111 1 124566665431
Q ss_pred ccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcccCChHHHHHHHH
Q 030956 85 LWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMR 148 (168)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~l~ 148 (168)
..++|.+...... .+..+++|++++++.++.+ +...+++++
T Consensus 76 ---------~~~~~~~~~~~~~-----------~~~~~~~W~~~eel~~~~~---p~~~~kil~ 116 (118)
T cd03431 76 ---------TLHVYLARLEGDL-----------LAPDEGRWVPLEELDEYAL---PTVMRKILE 116 (118)
T ss_pred ---------EEEEEEEEEeCCC-----------cCccccEEccHHHHhhCCC---CHHHHHHHH
Confidence 1244554443211 1345679999999998765 556666654
No 89
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=99.05 E-value=1e-09 Score=76.09 Aligned_cols=116 Identities=21% Similarity=0.283 Sum_probs=79.6
Q ss_pred ceeeeeEEEEEeeCCcEEEEEecC----CCCcEE-cCccccCCCCCHHHHHHHHHHHhhCCccc--eeeeecCC-ceeec
Q 030956 2 IYAECSVLSMLIYLGQIFVASRLN----VPGAWQ-MPQGGIEDGEDPKLAAMRELREETGIVSA--EIIAEVPN-WLTYD 73 (168)
Q Consensus 2 ~~r~~~~~~v~~~~~~vLl~~r~~----~~g~w~-lP~G~ie~~E~~~eaa~RE~~EEtGi~~~--~~~~~~~~-~~~~~ 73 (168)
|||.+ ...+++.+|++|+.+|.. +|+.|. ...|+--+||+..+|++|.+..|+||++. ....++.. .+...
T Consensus 32 LHrAF-S~~lFne~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~il~rf~YrA~ 110 (185)
T COG1443 32 LHRAF-SSFLFNERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKLEILPRFRYRAA 110 (185)
T ss_pred HHhhh-heeEECCCCceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcccCccccccceEEecc
Confidence 45544 457888899999999884 568884 45889899999999999999999999975 22233322 11222
Q ss_pred CCcccccccccccCCccccceEEEEEEEEccCC-cccccCCCCCCcccceeeEeChhHHHhhccc
Q 030956 74 FPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDE-SEINLANGEADPEFAEWKWASPEEVVEQAVD 137 (168)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~ 137 (168)
++++. .....+|++.+.... .+ ...+|..+++|++++++.++...
T Consensus 111 ~~~~~-------------~E~Eic~V~~~~~~~~~~------~npdEV~~~~wv~~e~l~~~~~~ 156 (185)
T COG1443 111 DPDGI-------------VENEICPVLAARLDSALD------PNPDEVMDYRWVSPEDLKEMVDA 156 (185)
T ss_pred CCCCc-------------ceeeeeeEEEEeecCCCC------CChHHhhheeccCHHHHHHhhcC
Confidence 22222 222355666655443 22 23469999999999999998854
No 90
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=98.88 E-value=1.4e-08 Score=73.77 Aligned_cols=43 Identities=23% Similarity=0.375 Sum_probs=37.6
Q ss_pred cEEEEEecC----CCCcEEcCccccCCCC-CHHHHHHHHHHHhhCCcc
Q 030956 17 QIFVASRLN----VPGAWQMPQGGIEDGE-DPKLAAMRELREETGIVS 59 (168)
Q Consensus 17 ~vLl~~r~~----~~g~w~lP~G~ie~~E-~~~eaa~RE~~EEtGi~~ 59 (168)
.||+.+|+. .+|.-.||||+.+..+ +...+|.||+.||+|++.
T Consensus 59 ~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~ 106 (246)
T KOG3069|consen 59 SVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDP 106 (246)
T ss_pred EEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCH
Confidence 599999885 4588999999999865 777899999999999995
No 91
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=98.78 E-value=3.7e-08 Score=65.22 Aligned_cols=110 Identities=19% Similarity=0.299 Sum_probs=61.7
Q ss_pred EEEEEeeCCcEEEEEecCCC---CcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCccccccccc
Q 030956 8 VLSMLIYLGQIFVASRLNVP---GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNR 84 (168)
Q Consensus 8 ~~~v~~~~~~vLl~~r~~~~---g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (168)
+++++.++|++||.+|+..+ |+|+||.-..+. ++..+.+.+.+.+..|+.+... ..++ .+.|.|++....
T Consensus 1 ~~~i~~~~~~~Ll~kRp~~gll~GLwefP~~e~~~-~~~~~~l~~~~~~~~~~~~~~~-~~~~-~v~H~fSH~~~~---- 73 (114)
T PF14815_consen 1 VLLIIRSQGRVLLEKRPEKGLLAGLWEFPLIESDE-EDDEEELEEWLEEQLGLSIRSV-EPLG-TVKHVFSHRRWT---- 73 (114)
T ss_dssp EEEEEETTSEEEEEE--SSSTTTT-EE--EEE-SS-S-CHHHHHHHTCCSSS-EEEE--S-SE-EEEEE-SSEEEE----
T ss_pred CEEEEEeCCEEEEEECCCCChhhcCcccCEeCccC-CCCHHHHHHHHHHHcCCChhhh-eecC-cEEEEccceEEE----
Confidence 34677789999999999843 999999988774 3335555566667788764322 2222 467777775422
Q ss_pred ccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcccCChHHHHHHH
Q 030956 85 LWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVM 147 (168)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~l 147 (168)
.++|.+.+...... +..+.+|++.+++.+..+ +...++++
T Consensus 74 ----------~~~~~~~~~~~~~~----------~~~~~~W~~~~~l~~~~~---p~~~~kil 113 (114)
T PF14815_consen 74 ----------IHVYEVEVSADPPA----------EPEEGQWVSLEELDQYPL---PTPMRKIL 113 (114)
T ss_dssp ----------EEEEEEEEE-SS--------------TTEEEEEGGGGGGS------HHHHHHH
T ss_pred ----------EEEEEEEecCCCCC----------CCCCcEEEEHHHHhhCCC---CHHHHHHh
Confidence 35666666543211 357789999999999876 55555554
No 92
>PLN02839 nudix hydrolase
Probab=98.75 E-value=1.7e-07 Score=72.98 Aligned_cols=104 Identities=20% Similarity=0.225 Sum_probs=66.2
Q ss_pred CcEEEEEecC----CCCcEE-cCccccCCCCCHHHHHHHHHHHhhCCccc---eeeeecCCceeecCCcccccccccccC
Q 030956 16 GQIFVASRLN----VPGAWQ-MPQGGIEDGEDPKLAAMRELREETGIVSA---EIIAEVPNWLTYDFPPAVKTKVNRLWG 87 (168)
Q Consensus 16 ~~vLl~~r~~----~~g~w~-lP~G~ie~~E~~~eaa~RE~~EEtGi~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (168)
.++.+.||+. +||+|. +.+|++..||++.++++||..||+|+... .+... + .++|.+...
T Consensus 218 ~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~~-G-~VsY~~~~~---------- 285 (372)
T PLN02839 218 KFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKAIADRAIAV-G-AVSYMDIDQ---------- 285 (372)
T ss_pred eEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceEe-E-EEEEEEEcC----------
Confidence 3588888874 579994 56999999999999999999999999842 22211 1 223321111
Q ss_pred CccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcc
Q 030956 88 GEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV 136 (168)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 136 (168)
........++|-+.+..+ .... ..++|++++.+++++|+.+.+.
T Consensus 286 ~g~~~evly~YDLeLP~d-f~P~----~qDGEVe~F~Lm~v~EV~~~l~ 329 (372)
T PLN02839 286 YCFKRDVLFCYDLELPQD-FVPK----NQDGEVESFKLIPVAQVANVIR 329 (372)
T ss_pred CccccCEEEEeeeecCCc-cccC----CCccceeEEEEecHHHHHHHHH
Confidence 111222233333333322 1111 3556999999999999998775
No 93
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=98.18 E-value=3.1e-06 Score=61.09 Aligned_cols=109 Identities=15% Similarity=0.167 Sum_probs=64.3
Q ss_pred EEEEEecCCCCcEEcCccccCCCCCHHHHHHHHHHHhhCCcccee--------eeecCCceeecCCcccccccccccCCc
Q 030956 18 IFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEI--------IAEVPNWLTYDFPPAVKTKVNRLWGGE 89 (168)
Q Consensus 18 vLl~~r~~~~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (168)
++.++|++ .|.|.+|||.+++||.+..++.||+.||+=-..... ....+..+--.|. +..++..
T Consensus 141 ~vavkr~d-~~~WAiPGGmvdpGE~vs~tLkRef~eEa~ns~~k~~e~~l~~~~~~~g~evYkGYv-------DDpRNTD 212 (275)
T KOG4195|consen 141 FVAVKRPD-NGEWAIPGGMVDPGEKVSATLKREFGEEAMNSLQKSNEEMLHKLLSQCGMEVYKGYV-------DDPRNTD 212 (275)
T ss_pred EEEEecCC-CCcccCCCCcCCchhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCCeEEeeeec-------CCCCccc
Confidence 56777776 589999999999999999999999999975332211 1111211111122 2223333
Q ss_pred cccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhc
Q 030956 90 WHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQA 135 (168)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~ 135 (168)
.....+..+.+.....+...++.. +-.++...++|+.++.-..+-
T Consensus 213 NaWmET~avn~hde~g~~~~nl~L-~AgDda~~vrW~dVn~~l~Ly 257 (275)
T KOG4195|consen 213 NAWMETVAVNFHDEDGNNMDNLNL-EAGDDAKKVRWVDVNSNLPLY 257 (275)
T ss_pred ccceeEEEEeeeccccchhccccc-cccCcccceeEEEecCCccch
Confidence 333344455555544322222211 344577889999998766654
No 94
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.04 E-value=1.6e-05 Score=56.61 Aligned_cols=134 Identities=22% Similarity=0.400 Sum_probs=77.5
Q ss_pred ceeeeeEEEEEeeCCcEEEEEecC----CCCcEE-----cCc---cccCC--CCCHHHHHHHHHHHhhCCccceee-eec
Q 030956 2 IYAECSVLSMLIYLGQIFVASRLN----VPGAWQ-----MPQ---GGIED--GEDPKLAAMRELREETGIVSAEII-AEV 66 (168)
Q Consensus 2 ~~r~~~~~~v~~~~~~vLl~~r~~----~~g~w~-----lP~---G~ie~--~E~~~eaa~RE~~EEtGi~~~~~~-~~~ 66 (168)
|+|.. .+++++.++++||.+|+. .|+.|. =|- |..+. +.....||.|.+.-|+||....+. ..+
T Consensus 51 LHRaF-SVFlFns~~~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~e~v~pee~ 129 (225)
T KOG0142|consen 51 LHRAF-SVFLFNSKNELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLEEVPPEEF 129 (225)
T ss_pred hhhee-eEEEecCcchHHHhhhccccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCccccCHHHc
Confidence 56655 447778899999999986 245442 121 22222 236789999999999999954432 122
Q ss_pred CCceeecCCcccccccccccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcccCCh---HHH
Q 030956 67 PNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKR---PTY 143 (168)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~---~~~ 143 (168)
.+...+.|.... +|.| +.+..-|++.+..+ ..+++ ..+|+.+++|++.+++.+++.+... +-+
T Consensus 130 ~~ltrihYkA~s--------dg~w-GEhEiDYiL~~~~~-~~~nP----npnEv~e~ryvs~eelkel~~~~~~~~TPWf 195 (225)
T KOG0142|consen 130 NFLTRIHYKAPS--------DGIW-GEHEIDYILFLVKD-VTLNP----NPNEVSEIRYVSREELKELVAKASAGFTPWF 195 (225)
T ss_pred ccceeeeeecCC--------CCCc-ccceeeEEEEEecc-CCCCC----ChhhhhHhheecHHHHHHHHhccccCCChHH
Confidence 232233332211 1122 23344455555442 22222 4469999999999999999864422 445
Q ss_pred HHHHHHH
Q 030956 144 EEVMRTF 150 (168)
Q Consensus 144 ~~~l~~l 150 (168)
+.+.+.+
T Consensus 196 kli~~~~ 202 (225)
T KOG0142|consen 196 KLISENF 202 (225)
T ss_pred HHHHHHH
Confidence 5555544
No 95
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=97.77 E-value=1e-05 Score=61.73 Aligned_cols=45 Identities=27% Similarity=0.522 Sum_probs=37.9
Q ss_pred CcEEEEEecCCCCcEEcCccccCCCCCHHHHHHHHHHHhhCCccce
Q 030956 16 GQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE 61 (168)
Q Consensus 16 ~~vLl~~r~~~~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~ 61 (168)
.++|+++.-.. ..|.+|.|++..+|+..+||.||+.||||.+...
T Consensus 95 sr~llv~g~qa-~sw~fprgK~~kdesd~~caiReV~eetgfD~sk 139 (348)
T KOG2937|consen 95 SRCLLVKGWQA-SSWSFPRGKISKDESDSDCAIREVTEETGFDYSK 139 (348)
T ss_pred hhhheeeceec-ccccccCccccccchhhhcchhcccchhhcCHHH
Confidence 46777775553 3499999999999999999999999999999643
No 96
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=97.23 E-value=0.0046 Score=42.89 Aligned_cols=108 Identities=18% Similarity=0.302 Sum_probs=62.9
Q ss_pred EEEEEeeCCcEEEEEecCCC------CcEEcC-ccccCCCC--C-HHH----HHHHHHHHhhCCcccee--eeecCCcee
Q 030956 8 VLSMLIYLGQIFVASRLNVP------GAWQMP-QGGIEDGE--D-PKL----AAMRELREETGIVSAEI--IAEVPNWLT 71 (168)
Q Consensus 8 ~~~v~~~~~~vLl~~r~~~~------g~w~lP-~G~ie~~E--~-~~e----aa~RE~~EEtGi~~~~~--~~~~~~~~~ 71 (168)
-.+++.+.+.||+-.|-..+ |.+++- ||+++.++ + ..+ .+.||+.||.++.-... +..++..+.
T Consensus 64 pYvvi~~edevliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGlINd 143 (203)
T COG4112 64 PYVVIMDEDEVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGLIND 143 (203)
T ss_pred cEEEEecCCEEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeeeecC
Confidence 44556666799999988643 556665 89998764 2 222 47899999999983222 122222111
Q ss_pred ecCCcccccccccccCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhh
Q 030956 72 YDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQ 134 (168)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~ 134 (168)
..++. . ..+.-..|..+.......+. ..+..+++|+...++.+.
T Consensus 144 --d~neV-g----------kVHiG~lf~~~~k~ndvevK------Ekd~~~~kwik~~ele~~ 187 (203)
T COG4112 144 --DTNEV-G----------KVHIGALFLGRGKFNDVEVK------EKDLFEWKWIKLEELEKF 187 (203)
T ss_pred --CCccc-c----------eEEEEEEEEeeccccceeee------ecceeeeeeeeHHHHHHH
Confidence 11111 0 01122445555554333332 236788999999999883
No 97
>PRK10880 adenine DNA glycosylase; Provisional
Probab=97.18 E-value=0.0061 Score=48.08 Aligned_cols=107 Identities=11% Similarity=0.170 Sum_probs=56.9
Q ss_pred EEEEeeCCcEEEEEecCC---CCcEEcCccccCCCCCHHHHHHHHHHHhhCCccceeeeecCCceeecCCcccccccccc
Q 030956 9 LSMLIYLGQIFVASRLNV---PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRL 85 (168)
Q Consensus 9 ~~v~~~~~~vLl~~r~~~---~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (168)
++++.+++++|+.+|... .|+|+||.. +.. + ..++..|+.|+..... ..+. ...|.|++....
T Consensus 235 ~~~~~~~~~~~l~~r~~~gl~~gl~~fP~~--~~~----~-~~~~~~~~~~~~~~~~-~~~~-~~~H~fTH~~~~----- 300 (350)
T PRK10880 235 FLLLQHGDEVWLEQRPPSGLWGGLFCFPQF--ADE----E-ELRQWLAQRGIAADNL-TQLT-AFRHTFSHFHLD----- 300 (350)
T ss_pred EEEEEECCEEEEEECCccChhhccccCCCC--cch----h-hHHHHHHhcCCchhhh-cccC-ceEEEEeeEEEE-----
Confidence 344556789999999864 389999963 211 1 2455557777752111 1122 245655543311
Q ss_pred cCCccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcccCChHHHHHHHHHH
Q 030956 86 WGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTF 150 (168)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~l~~l 150 (168)
.+.|.+........ . ...+..|++++++.+..+ +...+++++.+
T Consensus 301 ---------~~~~~~~~~~~~~~--~-------~~~~~~w~~~~~~~~~~~---p~~~~k~l~~~ 344 (350)
T PRK10880 301 ---------IVPMWLPVSSFTGC--M-------DEGNGLWYNLAQPPSVGL---AAPVERLLQQL 344 (350)
T ss_pred ---------EEEEEEEccccccc--c-------CCcCCeEechHHhcccCC---cHHHHHHHHHh
Confidence 11222222111000 0 012346999999999876 56666666543
No 98
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=97.16 E-value=0.002 Score=46.00 Aligned_cols=53 Identities=21% Similarity=0.277 Sum_probs=37.0
Q ss_pred eeeeEEEEEee-CC--cEEEEEecCCCCcEEcCccccCCCCCHHHHHHHHHHHhhCCc
Q 030956 4 AECSVLSMLIY-LG--QIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIV 58 (168)
Q Consensus 4 r~~~~~~v~~~-~~--~vLl~~r~~~~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~ 58 (168)
|+++-++++.+ .+ +|||.+... ..|.+|||....||+..++..|.+.+-.|..
T Consensus 43 RrsVe~Vllvh~h~~PHvLLLq~~~--~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~ 98 (188)
T PF13869_consen 43 RRSVEGVLLVHEHGHPHVLLLQIGN--TFFKLPGGRLRPGEDEIEGLKRKLTEKLSPE 98 (188)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEETT--TEEE-SEEE--TT--HHHHHHHHHHHHHB-S
T ss_pred ceEEEEEEEEecCCCcEEEEEeccC--ccccCCccEeCCCCChhHHHHHHHHHHcCCC
Confidence 55555555555 33 488888665 5899999999999999999999999999886
No 99
>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]
Probab=96.72 E-value=0.0074 Score=44.75 Aligned_cols=103 Identities=23% Similarity=0.323 Sum_probs=63.9
Q ss_pred EEEEEecC----CCCcE-EcCccccCCCCCHHHHHHHHHHHhhCCccc---eeeeecCCceeecCCcccccccccccCCc
Q 030956 18 IFVASRLN----VPGAW-QMPQGGIEDGEDPKLAAMRELREETGIVSA---EIIAEVPNWLTYDFPPAVKTKVNRLWGGE 89 (168)
Q Consensus 18 vLl~~r~~----~~g~w-~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (168)
+.+-||++ +||+| ...+|++.-|-.+.++|+.|..||+.++.. .+... + .+++-+..+.. .
T Consensus 150 iWvprRS~TKqTWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~~~~~Nlv~~-G-~VSy~~~esr~---------~ 218 (306)
T KOG4313|consen 150 IWVPRRSNTKQTWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPSDLVKNLVSA-G-CVSYYKFESRQ---------G 218 (306)
T ss_pred EEecccCCccccCcchhhhhhccccccCchHHHHHHHHHHHhcCCchhhHhcceec-c-eeEEEeeehhh---------c
Confidence 56677774 56888 466999999999999999999999999952 22222 2 23332211110 0
Q ss_pred cccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcc
Q 030956 90 WHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV 136 (168)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 136 (168)
.....+ |++.+.....-. ++ ..++|...+.-+++++..+.++
T Consensus 219 ~~pe~q--YVfDL~l~~d~i-P~--~nDGEV~~F~Lltl~~~v~~l~ 260 (306)
T KOG4313|consen 219 LFPETQ--YVFDLELPLDFI-PQ--NNDGEVQAFELLTLKDCVERLF 260 (306)
T ss_pred cCccce--EEEeccCchhhc-CC--CCCCceeeEeeecHHHHHHHHH
Confidence 112223 555544332111 11 3556999999999999887663
No 100
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=96.59 E-value=0.029 Score=41.70 Aligned_cols=105 Identities=15% Similarity=0.276 Sum_probs=63.2
Q ss_pred EEEEEecC-CCCcEEcCcccc-CCCCCHHHHHHHHHHHhhCCccce-eeeecCC-ceeecCCcccccccccccCCccccc
Q 030956 18 IFVASRLN-VPGAWQMPQGGI-EDGEDPKLAAMRELREETGIVSAE-IIAEVPN-WLTYDFPPAVKTKVNRLWGGEWHGQ 93 (168)
Q Consensus 18 vLl~~r~~-~~g~w~lP~G~i-e~~E~~~eaa~RE~~EEtGi~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (168)
+||++++- ..+.|.||.+.. +.++++.-+|.|.+++-.|-.... .+....+ .+.+.++...... ..++.
T Consensus 141 yLLV~~k~g~~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~~~t~fvgnaP~g~~~~q~pr~~~~e-------~~~~s 213 (263)
T KOG4548|consen 141 YLLVKRKFGKSSVWIFPNRQFSSSEKTLRGHAERDLKVLSGENKSTWFVGNAPFGHTPLQSPREMTTE-------EPVSS 213 (263)
T ss_pred EEEEeeccCccceeeCCCcccCCccchHHHHHHHHHHHHhcchhhhheeccCccccccccCccccccc-------ccccc
Confidence 77888663 237899999999 899999999999999999976422 1121111 1122222222111 11223
Q ss_pred eEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcc
Q 030956 94 AQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV 136 (168)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 136 (168)
...+|.+.+...... +.+-..++.|++-+++.+.+.
T Consensus 214 k~ff~k~~lv~~~~~-------kn~n~edfvWvTkdel~e~l~ 249 (263)
T KOG4548|consen 214 KVFFFKASLVANSNQ-------KNQNKEDFVWVTKDELGEKLP 249 (263)
T ss_pred eeEEeeeeeccccch-------hcccccceEEechHHHhhhcc
Confidence 345555555543221 112345689999999999885
No 101
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=96.09 E-value=0.025 Score=43.16 Aligned_cols=91 Identities=20% Similarity=0.136 Sum_probs=59.4
Q ss_pred EEcCccccCCCCCHHHHHHHHHHHhhCCccc--eeeeecCCceeecCCcccccccccccCCccccceEEEEEEEEccCCc
Q 030956 30 WQMPQGGIEDGEDPKLAAMRELREETGIVSA--EIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDES 107 (168)
Q Consensus 30 w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (168)
.+|..|.+++.-+..+.|+||..||.|.+.. .+.... .+ -++. ...+..+..|.+.+.....
T Consensus 286 lELcag~Vd~p~s~~e~a~~e~veecGYdlp~~~~k~va----~y--~sGV----------G~SG~~QTmfy~eVTdA~r 349 (405)
T KOG4432|consen 286 LELCAGRVDDPFSDPEKAARESVEECGYDLPEDSFKLVA----KY--ISGV----------GQSGDTQTMFYVEVTDARR 349 (405)
T ss_pred eeeecccCCCCcccHHHHHHHHHHHhCCCCCHHHHhhhh----ee--eccc----------CCcCCeeEEEEEEeehhhc
Confidence 6788999999999999999999999999953 221111 11 1111 1123445677777765432
Q ss_pred ccccCCCCCCcccceeeEeChhHHHhhcc
Q 030956 108 EINLANGEADPEFAEWKWASPEEVVEQAV 136 (168)
Q Consensus 108 ~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 136 (168)
........+.+|+.++-=+|++++..+.-
T Consensus 350 sgpGgg~~ee~E~IEvv~lsle~a~~~~~ 378 (405)
T KOG4432|consen 350 SGPGGGEKEEDEDIEVVRLSLEDAPSLYR 378 (405)
T ss_pred cCCCCCcccccceeeEEEechhhhhHHHh
Confidence 22222223556888888999999998774
No 102
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=95.79 E-value=0.033 Score=38.96 Aligned_cols=51 Identities=20% Similarity=0.261 Sum_probs=39.3
Q ss_pred eeeeEEEEEeeC---CcEEEEEecCCCCcEEcCccccCCCCCHHHHHHHHHHHhhC
Q 030956 4 AECSVLSMLIYL---GQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETG 56 (168)
Q Consensus 4 r~~~~~~v~~~~---~~vLl~~r~~~~g~w~lP~G~ie~~E~~~eaa~RE~~EEtG 56 (168)
|+.+-++++.+. -+||+.+-.+ -.+.+|||+.++||+-.+...|-+-|-+|
T Consensus 69 RrsvegvlivheH~lPHvLLLQig~--tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lg 122 (221)
T KOG1689|consen 69 RRSVEGVLIVHEHNLPHVLLLQIGN--TFFKLPGGRLRPGEDEADGLKRLLTESLG 122 (221)
T ss_pred hheeeeeEEEeecCCCeEEEEeeCC--EEEecCCCccCCCcchhHHHHHHHHHHhc
Confidence 444444555543 3577776554 57999999999999999999999999999
No 103
>PRK13910 DNA glycosylase MutY; Provisional
Probab=95.49 E-value=0.17 Score=38.95 Aligned_cols=27 Identities=4% Similarity=0.150 Sum_probs=20.5
Q ss_pred eeeEeChhHHHhhcccCChHHHHHHHHHHH
Q 030956 122 EWKWASPEEVVEQAVDYKRPTYEEVMRTFR 151 (168)
Q Consensus 122 ~~~W~~~~e~~~~~~~~~~~~~~~~l~~l~ 151 (168)
+..|++++++.+..+ +...+++++.++
T Consensus 256 ~~~w~~~~~~~~~~~---p~~~~k~~~~l~ 282 (289)
T PRK13910 256 PIRFYSLKDLETLPI---SSMTLKILNFLK 282 (289)
T ss_pred cceEecHHHhhhcCC---cHHHHHHHHHHh
Confidence 448999999999877 566667776554
No 104
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=94.88 E-value=0.036 Score=42.32 Aligned_cols=39 Identities=23% Similarity=0.299 Sum_probs=32.4
Q ss_pred EEcCccccCCCCCHHHHHHHHHHHhhCCccc--eeeeecCC
Q 030956 30 WQMPQGGIEDGEDPKLAAMRELREETGIVSA--EIIAEVPN 68 (168)
Q Consensus 30 w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~--~~~~~~~~ 68 (168)
.++.+|-|+++-|+.|-|..|+.||.|.++. .++....+
T Consensus 81 ielc~g~idke~s~~eia~eev~eecgy~v~~d~l~hv~~~ 121 (405)
T KOG4432|consen 81 IELCAGLIDKELSPREIASEEVAEECGYRVDPDDLIHVITF 121 (405)
T ss_pred eeeeccccccccCHHHHhHHHHHHHhCCcCChhHceEEEEE
Confidence 6888999999999999999999999999963 44444444
No 105
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]
Probab=85.54 E-value=2 Score=33.84 Aligned_cols=35 Identities=23% Similarity=0.349 Sum_probs=26.5
Q ss_pred eeeEEEEEeeCCcEEEEEecCCC---CcEEcCccccCC
Q 030956 5 ECSVLSMLIYLGQIFVASRLNVP---GAWQMPQGGIED 39 (168)
Q Consensus 5 ~~~~~~v~~~~~~vLl~~r~~~~---g~w~lP~G~ie~ 39 (168)
..+..++..+++++++.+|...+ |+|.+|......
T Consensus 236 ~~~~~~~~~~~~~~~l~kr~~~gl~~gl~~fP~~e~~~ 273 (342)
T COG1194 236 RFAAFLILNRDGEVLLEKRPEKGLLGGLWCFPQFEDEA 273 (342)
T ss_pred heeeEEEEccCcchhhhhCcccCceecccccccccccc
Confidence 34455667778899999998743 899999876544
No 106
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=74.80 E-value=3.8 Score=31.74 Aligned_cols=53 Identities=19% Similarity=0.193 Sum_probs=32.6
Q ss_pred eeEEEEEeeCCcEEEEEecCCCCcEEcCccccCCCCCHHHHHHHHHHHhhCCccce
Q 030956 6 CSVLSMLIYLGQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE 61 (168)
Q Consensus 6 ~~~~~v~~~~~~vLl~~r~~~~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~ 61 (168)
|+.++++..+++++-.-..-..+.|..|--. --+-.+.++||++|+.|++...
T Consensus 14 ~s~~Vivd~~~~~~~~a~~~~Tnh~~ig~~~---~~~rie~~i~~A~~k~g~d~~~ 66 (336)
T KOG1794|consen 14 CSRLVIVDEDGTILGRAVGGGTNHWLIGSTT---CASRIEDMIREAKEKAGWDKKG 66 (336)
T ss_pred eeEEEEECCCCCEeeEeeccccccccCCchH---HHHHHHHHHHHHHhhcCCCccC
Confidence 3445566666676655444333667776211 1134567889999999998644
No 107
>PF07026 DUF1317: Protein of unknown function (DUF1317); InterPro: IPR009750 This entry is represented by Bacteriophage lambda, Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=72.00 E-value=7.7 Score=22.24 Aligned_cols=31 Identities=26% Similarity=0.300 Sum_probs=18.4
Q ss_pred cEEEEEecCCCCcEEcCccccCCCCCHHHHHHHHH
Q 030956 17 QIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMREL 51 (168)
Q Consensus 17 ~vLl~~r~~~~g~w~lP~G~ie~~E~~~eaa~RE~ 51 (168)
.+-+.......| |.+|+|.+-.+-. .|.|.+
T Consensus 12 ~itl~ys~~~~G-Wl~Pgg~vi~NPl---kAqR~A 42 (60)
T PF07026_consen 12 TITLPYSHFKNG-WLMPGGKVITNPL---KAQRLA 42 (60)
T ss_pred EEEEEEEeccce-eecCCCeeEcCHH---HHHHHH
Confidence 444554333224 9999999977543 355533
No 108
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=71.59 E-value=1.8 Score=33.76 Aligned_cols=44 Identities=32% Similarity=0.567 Sum_probs=36.6
Q ss_pred cEEEEEecCCCCcEEcCccccCCCCCHHHHHHHHHHHhhCCccc
Q 030956 17 QIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA 60 (168)
Q Consensus 17 ~vLl~~r~~~~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~ 60 (168)
.+....+...+..|.||.|.++.||-...++.|+..||+|.+..
T Consensus 253 ~~~aqS~~~~~e~~~~~~~k~sr~e~~r~~si~s~~~e~~f~~~ 296 (348)
T KOG2937|consen 253 VVTAQSYFAKPENWTFPKGKISRGEKPRDASIRSTFEEPGFPFG 296 (348)
T ss_pred ceeecccccccccccCcccccccCCccccchhhhcCCCcCCccc
Confidence 44455555556789999999999999999999999999999853
No 109
>KOG4485 consensus Uncharacterized conserved protein, contains ankyrin and FN3 repeats [General function prediction only]
Probab=68.62 E-value=47 Score=27.58 Aligned_cols=103 Identities=15% Similarity=0.189 Sum_probs=57.5
Q ss_pred ceeeeeEEEEEeeCCcEEEEEecCC---------------CC--------cEEcCccccCCCCC-------------HHH
Q 030956 2 IYAECSVLSMLIYLGQIFVASRLNV---------------PG--------AWQMPQGGIEDGED-------------PKL 45 (168)
Q Consensus 2 ~~r~~~~~~v~~~~~~vLl~~r~~~---------------~g--------~w~lP~G~ie~~E~-------------~~e 45 (168)
++|..-..+++..++|||+....-. +. .|+=.+|-++..|. +..
T Consensus 51 l~~GiYfa~iIhcddKVLVTsdD~pPiieVDEn~psalh~D~~WLiKmac~Wddik~L~ddmeralsnnvalhFRnKLin 130 (724)
T KOG4485|consen 51 LHHGIYFAAIIHCDDKVLVTSDDCPPIIEVDENVPSALHDDHHWLIKMACCWDDIKGLMDDMERALSNNVALHFRNKLIN 130 (724)
T ss_pred hhcceeEEEEEeeCCeEEEecCCCCcceeccCCCCccccchhHHHHHHHhhHHHHhhhhhhhhhhhcccchhhhHHHHHH
Confidence 3455555567778999998875410 11 25556676666553 223
Q ss_pred HHHHHHHHhhCCcc-ceeeeecCCceeecCCcccccccccccCCccccceEEEEEEEEccCCcccccCCCCCCcccceee
Q 030956 46 AAMRELREETGIVS-AEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWK 124 (168)
Q Consensus 46 aa~RE~~EEtGi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~ 124 (168)
||.. ..|-+||.- ..+.. ....+.++ ++|+..+.+..+.... .+...+
T Consensus 131 Aacq-MQeALGI~diGhl~Y-----kPL~dang------------------~~~L~cVq~ie~qka~-------qiin~R 179 (724)
T KOG4485|consen 131 AACQ-MQEALGIRDIGHLHY-----KPLIDANG------------------CFFLLCVQFIEPQKAF-------QIINLR 179 (724)
T ss_pred HHHH-HHHhhCcccccceee-----eeeecCCc------------------eEEEEEeeecccccce-------eeeeee
Confidence 3433 677888772 11100 01112222 3566666654443333 468889
Q ss_pred EeChhHHHhhc
Q 030956 125 WASPEEVVEQA 135 (168)
Q Consensus 125 W~~~~e~~~~~ 135 (168)
|+|.+.+....
T Consensus 180 WlP~nKL~kK~ 190 (724)
T KOG4485|consen 180 WLPFNKLLKKK 190 (724)
T ss_pred eeehHHHHHhh
Confidence 99999997665
No 110
>PF14443 DBC1: DBC1
Probab=62.62 E-value=14 Score=24.85 Aligned_cols=43 Identities=21% Similarity=0.298 Sum_probs=28.5
Q ss_pred cEEEEEecC----CCCcEEcC--ccccCC-CCCHHHHHHHHHHHhhCCcc
Q 030956 17 QIFVASRLN----VPGAWQMP--QGGIED-GEDPKLAAMRELREETGIVS 59 (168)
Q Consensus 17 ~vLl~~r~~----~~g~w~lP--~G~ie~-~E~~~eaa~RE~~EEtGi~~ 59 (168)
++|+.++.+ -+|.|.-- ||-... ...+..+|+|-+++-||++.
T Consensus 9 kFlv~~k~ke~~aiGG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDL 58 (126)
T PF14443_consen 9 KFLVGKKDKEIMAIGGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDL 58 (126)
T ss_pred eeEEeecCceEEecCCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccch
Confidence 445554443 13667544 444444 34788999999999999994
No 111
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=58.65 E-value=10 Score=19.88 Aligned_cols=23 Identities=35% Similarity=0.378 Sum_probs=11.6
Q ss_pred CccccCCCCCHHHHHHHHHHHhh
Q 030956 33 PQGGIEDGEDPKLAAMRELREET 55 (168)
Q Consensus 33 P~G~ie~~E~~~eaa~RE~~EEt 55 (168)
-||-..+|--+...++||+-||.
T Consensus 14 lggLasPgPvp~~~alkELIeEL 36 (43)
T PF03487_consen 14 LGGLASPGPVPSSTALKELIEEL 36 (43)
T ss_dssp ---------S-HHHHHHHHHHHH
T ss_pred hcccCCCCCCCchHHHHHHHHHH
Confidence 36666677778888999999986
No 112
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=37.45 E-value=16 Score=28.37 Aligned_cols=30 Identities=17% Similarity=0.036 Sum_probs=27.9
Q ss_pred cEEcCccccCCCCCHHHHHHHHHHHhhCCcc
Q 030956 29 AWQMPQGGIEDGEDPKLAAMRELREETGIVS 59 (168)
Q Consensus 29 ~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~ 59 (168)
.|.. .|+...++++.+++.|++.+++|...
T Consensus 56 ~W~~-~Gr~~iwl~l~~~~~~lV~~a~~~gf 85 (295)
T KOG0648|consen 56 KWYL-QGRKGIWLKLPEELARLVEEAAKYGF 85 (295)
T ss_pred HHHH-ccCcccceechHHHHhHHHHHHhcCc
Confidence 6888 99999999999999999999999873
No 113
>PF08915 tRNA-Thr_ED: Archaea-specific editing domain of threonyl-tRNA synthetase; InterPro: IPR015011 Archaea-specific editing domain of threonyl-tRNA synthetase, with marked structural similarity to D-amino acids deacylases found in eubacteria and eukaryotes. This domain can bind D-amino acids, and ensures high fidelity during translation. It is especially responsible for removing incorrectly attached serine from tRNA-Thr. The domain forms a fold that can be defined as two layers of beta-sheets (a three-stranded sheet and a five-stranded sheet), with two alpha-helices located adjacent to the five-stranded sheet []. ; GO: 0004829 threonine-tRNA ligase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0005737 cytoplasm; PDB: 3PD4_B 3PD3_A 2HL0_A 2HL1_A 2HKZ_A 3PD5_B 2HL2_A 3PD2_B 1Y2Q_A.
Probab=37.31 E-value=38 Score=23.19 Aligned_cols=47 Identities=9% Similarity=0.114 Sum_probs=33.9
Q ss_pred cceeeEeChhHHHhhcccCChHHHHHHHHHHHHHHhhcCcccccccCCC
Q 030956 120 FAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYLNENGIAAKCKSAKW 168 (168)
Q Consensus 120 ~~~~~W~~~~e~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~ 168 (168)
...+--+|+..+-.-+.+ +....+++..+.+.|...+-...+.+++|
T Consensus 72 ~~~ivlyPyAHLSs~La~--P~~A~~iL~~le~~L~~~g~eV~raPFGw 118 (138)
T PF08915_consen 72 AKRIVLYPYAHLSSSLAS--PDVAVEILKKLEERLKSRGFEVYRAPFGW 118 (138)
T ss_dssp -SEEEEEE-GGGSSSB----HHHHHHHHHHHHHHHHHTT-EEEE--TTE
T ss_pred CCEEEEeCcccccCCcCC--hHHHHHHHHHHHHHHHhCCCeEEEeCCcc
Confidence 455677888888776654 88899999999999988888888888887
No 114
>PRK07198 hypothetical protein; Validated
Probab=32.88 E-value=80 Score=25.73 Aligned_cols=44 Identities=23% Similarity=0.281 Sum_probs=29.2
Q ss_pred eeCCcEEEEEecCCCCcEEcCccccCCCCCHHHHHHHHHHHhhCCc
Q 030956 13 IYLGQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIV 58 (168)
Q Consensus 13 ~~~~~vLl~~r~~~~g~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~ 58 (168)
..++.+.+.+-.- .-.|.|||=.-+.|=+ +....|-++|+||=-
T Consensus 159 ~~~g~~~vtk~av-~pvwylpgva~rfg~~-e~~lrr~lfe~t~g~ 202 (418)
T PRK07198 159 LANGDVVVTKAAI-EPVWYLPGVAERFGVS-ETDLRRTLFEQTGGM 202 (418)
T ss_pred cCCCcEEEEEeee-cccccccchHHHcCCC-HHHHHHHHHHHcCCC
Confidence 3455555555443 3579999866555533 456788889999965
No 115
>PF09505 Dimeth_Pyl: Dimethylamine methyltransferase (Dimeth_PyL); InterPro: IPR012653 This family consists of dimethylamine methyltransferases from the genus Methanosarcina. It is found in three nearly identical copies in each of Methanosarcina acetivorans, Methanosarcina barkeri, and Methanosarcina mazei. It is one of a suite of three non-homologous enzymes with a critical UAG-encoded pyrrolysine residue in these species (along with trimethylamine methyltransferase and monomethylamine methyltransferase). It demethylates dimethylamine, leaving monomethylamine, and methylates the prosthetic group of the small corrinoid protein MtbC. The methyl group is then transferred by methylcorrinoid:coenzyme M methyltransferase to coenzyme M. Note that the pyrrolysine residue is variously translated as K or X, or as a stop codon that truncates the sequence.; GO: 0008168 methyltransferase activity, 0015948 methanogenesis
Probab=32.23 E-value=30 Score=27.35 Aligned_cols=30 Identities=33% Similarity=0.329 Sum_probs=23.6
Q ss_pred EEcCccccCCCCCHHHHHHHHHHHhhCCcc
Q 030956 30 WQMPQGGIEDGEDPKLAAMRELREETGIVS 59 (168)
Q Consensus 30 w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~ 59 (168)
|.--+=+++..+-..+.+.||++||++|-+
T Consensus 402 YVa~KL~V~~~dLsDe~~MrelReeL~IG~ 431 (466)
T PF09505_consen 402 YVAKKLGVEPMDLSDEYVMRELREELNIGV 431 (466)
T ss_pred HHHHhhCCChhhcccHHHHHHHHHhcCcce
Confidence 444455677778888999999999999874
No 116
>PF14044 NETI: NETI protein
Probab=32.13 E-value=46 Score=19.01 Aligned_cols=21 Identities=19% Similarity=0.280 Sum_probs=16.4
Q ss_pred ccCCCCCHHHHHHHHHHHhhCCc
Q 030956 36 GIEDGEDPKLAAMRELREETGIV 58 (168)
Q Consensus 36 ~ie~~E~~~eaa~RE~~EEtGi~ 58 (168)
.++.+||+.+|+.| +.+-|..
T Consensus 3 eV~enETI~~CL~R--M~~eGY~ 23 (57)
T PF14044_consen 3 EVEENETISDCLAR--MKKEGYM 23 (57)
T ss_pred eccCCCcHHHHHHH--HHHcCCC
Confidence 46889999999999 3455665
No 117
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=32.10 E-value=70 Score=30.43 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=21.7
Q ss_pred EEcCccccCCCCCHHHHHHHHHHHhhCCcccee
Q 030956 30 WQMPQGGIEDGEDPKLAAMRELREETGIVSAEI 62 (168)
Q Consensus 30 w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~ 62 (168)
-.+|.|. ..+..+||+++|+|+....+
T Consensus 270 vTfP~G~------~Q~qLi~e~Yse~Gl~P~sv 296 (2376)
T KOG1202|consen 270 VTFPSGD------MQEQLIRETYSEAGLNPESV 296 (2376)
T ss_pred ccCCCcH------HHHHHHHHHHHhcCCCcccE
Confidence 5677776 56899999999999996554
No 118
>PF12860 PAS_7: PAS fold
Probab=31.70 E-value=32 Score=21.87 Aligned_cols=41 Identities=10% Similarity=0.074 Sum_probs=30.7
Q ss_pred EEEEEeeCCcEEEEEecCCCCcEEcCccccCCCCCHHHHHHH
Q 030956 8 VLSMLIYLGQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMR 49 (168)
Q Consensus 8 ~~~v~~~~~~vLl~~r~~~~g~w~lP~G~ie~~E~~~eaa~R 49 (168)
++++++.++++++..+.. -.+|.+|...+..|-++.+.+.+
T Consensus 7 Gv~v~D~~~rl~~~N~~~-~~l~~~~~~~~~~G~~~~~l~~~ 47 (115)
T PF12860_consen 7 GVAVFDSDGRLVFWNQRF-RELFGLPPEMLRPGASFRDLLRR 47 (115)
T ss_pred eEEEEcCCCeEEeEcHHH-HHHhCCCHHHhcCCCCHHHHHHH
Confidence 456667778877776553 36899999999999987776655
No 119
>COG3864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.23 E-value=61 Score=25.60 Aligned_cols=42 Identities=12% Similarity=0.043 Sum_probs=26.8
Q ss_pred eeEEEEEeeCCcEEEEEecCCCCcEEcCccccCCCCCHHHHHH
Q 030956 6 CSVLSMLIYLGQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAM 48 (168)
Q Consensus 6 ~~~~~v~~~~~~vLl~~r~~~~g~w~lP~G~ie~~E~~~eaa~ 48 (168)
|+.+.+.+..+.+=++.|++ +-+|.+|+|+.+..+-+.++..
T Consensus 344 ~~lIyfTDG~gd~p~~~r~~-~~lwVl~~~~~e~e~f~~e~v~ 385 (396)
T COG3864 344 CFLIYFTDGMGDQPLVFRPK-VLLWVLTGAKGEVEKFKNEVVE 385 (396)
T ss_pred ceEEEEccCCCCcccccCCc-ceEEEecCCccchhccchHHHH
Confidence 54444444445566666665 4789999988777666666443
No 120
>PF10820 DUF2543: Protein of unknown function (DUF2543); InterPro: IPR020251 This entry contains proteins with no known function.
Probab=27.38 E-value=12 Score=22.30 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=26.6
Q ss_pred cEEcCccccCCCCCHHHHHHHHHHHhhCCcccee
Q 030956 29 AWQMPQGGIEDGEDPKLAAMRELREETGIVSAEI 62 (168)
Q Consensus 29 ~w~lP~G~ie~~E~~~eaa~RE~~EEtGi~~~~~ 62 (168)
++.+--.++-.+|.+.+-|.+|...|+|+....+
T Consensus 35 YFQlLitRLmnneeIsEeaQ~EMA~eAgi~~~rI 68 (81)
T PF10820_consen 35 YFQLLITRLMNNEEISEEAQQEMASEAGIDEQRI 68 (81)
T ss_pred HHHHHHHHHhccHhhhHHHHHHHHHHcCCcHHHH
Confidence 3455556677788899999999999999996544
No 121
>COG0828 RpsU Ribosomal protein S21 [Translation, ribosomal structure and biogenesis]
Probab=26.70 E-value=55 Score=19.41 Aligned_cols=26 Identities=35% Similarity=0.477 Sum_probs=18.1
Q ss_pred cCccccCCCCCHHHHHHHHH---HHhhCCc
Q 030956 32 MPQGGIEDGEDPKLAAMREL---REETGIV 58 (168)
Q Consensus 32 lP~G~ie~~E~~~eaa~RE~---~EEtGi~ 58 (168)
.|...+..||+++.|..| + .+++|+-
T Consensus 1 M~~v~V~ene~~d~ALrr-FKr~~~k~gil 29 (67)
T COG0828 1 MPQVKVRENEPLDKALRR-FKRKVEKEGIL 29 (67)
T ss_pred CCeeeecCCChHHHHHHH-HHHHHHHHHHH
Confidence 467788889988887655 4 4566654
No 122
>PF03559 Hexose_dehydrat: NDP-hexose 2,3-dehydratase; InterPro: IPR005212 This domain occurs in a range of proteins from antibiotic production pathways. These include the gra-ORF27 Q9ZA32 from SWISSPROT product that probably functions at an early step, most likely as a dTDP-4-keto-6- deoxyglucose-2,3-dehydratase []. Its homologues include dnmT from the daunorubicin biosynthetic gene cluster in S. peucetius [], a similar gene from the daunomycin biosynthetic cluster in Streptomyces sp. (strain 5)Q53880 from SWISSPROT [], eryBVI from the erythromycin cluster in S. erythraea and snoH from the nogalamycin cluster in S. nogalater. This domain is a 200 amino acid long region, which may be a structural unit, that occurs twice within the proteins that contain it.
Probab=25.91 E-value=82 Score=23.16 Aligned_cols=40 Identities=10% Similarity=0.277 Sum_probs=26.0
Q ss_pred CccccceEEEEEEEEccCCcccccCCCCCCcccceeeEeChhHHHhhcc
Q 030956 88 GEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV 136 (168)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 136 (168)
|+++.+...+.+..++.+. +.+...+++|+++.++.+++.
T Consensus 151 gRF~~~~NR~~IVev~~~~---------~~~~~~~f~W~tl~QL~~Ll~ 190 (206)
T PF03559_consen 151 GRFYHKRNRNMIVEVDEDF---------PVEVPPDFRWMTLGQLTELLR 190 (206)
T ss_pred hhhcccccccEEEEeCCCC---------CCCCCCCcEEecHHHHHHHHh
Confidence 4444554556666665441 122457889999999999884
No 123
>PF15533 Toxin_54: Putative toxin 54
Probab=24.65 E-value=87 Score=18.41 Aligned_cols=16 Identities=25% Similarity=0.503 Sum_probs=13.9
Q ss_pred CCcEEcCccccCCCCC
Q 030956 27 PGAWQMPQGGIEDGED 42 (168)
Q Consensus 27 ~g~w~lP~G~ie~~E~ 42 (168)
.+.|..|+|+...||+
T Consensus 45 gni~ik~KGGkG~g~p 60 (66)
T PF15533_consen 45 GNIYIKPKGGKGEGIP 60 (66)
T ss_pred CCEEEecCCCCCCCcc
Confidence 4789999999998886
No 124
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=24.16 E-value=65 Score=19.49 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=17.0
Q ss_pred CCHHHHHHHHHHHhhCCcccee
Q 030956 41 EDPKLAAMRELREETGIVSAEI 62 (168)
Q Consensus 41 E~~~eaa~RE~~EEtGi~~~~~ 62 (168)
+.+.+-|+|+..++.|+....+
T Consensus 53 ~Ap~~eaV~~~~~~aG~p~d~I 74 (77)
T PF14026_consen 53 EAPDEEAVREHARRAGLPADRI 74 (77)
T ss_pred ECCCHHHHHHHHHHcCCCcceE
Confidence 4556778999999999986554
No 125
>PF11152 DUF2930: Protein of unknown function (DUF2930); InterPro: IPR021325 This family of proteins has no known function.
Probab=22.33 E-value=73 Score=23.19 Aligned_cols=36 Identities=17% Similarity=0.305 Sum_probs=21.5
Q ss_pred eeEEEEEeeCCcEEEEEecCCCCcEEcCccccCCCCCHHHHHHHHH
Q 030956 6 CSVLSMLIYLGQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMREL 51 (168)
Q Consensus 6 ~~~~~v~~~~~~vLl~~r~~~~g~w~lP~G~ie~~E~~~eaa~RE~ 51 (168)
+...+++..+|++++.| |.|.-| ....+-+.+.|-+
T Consensus 93 ~a~svlV~~~g~~llrr-----G~~~~~-----~~~~~g~i~~~~~ 128 (195)
T PF11152_consen 93 NARSVLVYYDGRVLLRR-----GILGSP-----SKFKPGPICQRAM 128 (195)
T ss_pred CceEEEEEECCEEEEEe-----eccCCC-----CCcchHHHHHHHH
Confidence 33446667789999987 667544 2334445555533
No 126
>PRK10708 hypothetical protein; Provisional
Probab=21.73 E-value=1.7e+02 Score=16.68 Aligned_cols=19 Identities=26% Similarity=0.655 Sum_probs=11.6
Q ss_pred CCcEEEEEecCCC-CcEEcC
Q 030956 15 LGQIFVASRLNVP-GAWQMP 33 (168)
Q Consensus 15 ~~~vLl~~r~~~~-g~w~lP 33 (168)
.|-..|+.-.++| |.|.|-
T Consensus 29 EG~MyLvaL~dYP~GiWFFN 48 (62)
T PRK10708 29 EGTMYLVSLEDYPLGIWFFN 48 (62)
T ss_pred CcEEEEEEcCcCCCceEEEe
Confidence 4556666655555 777664
No 127
>PF10781 DSRB: Dextransucrase DSRB; InterPro: IPR019717 DSRB is a novel dextransucrase which produces a dextran different from the typical dextran, as it contains (1-6) and (1-2) linkages, when this strain is grown in the presence of sucrose [].
Probab=20.17 E-value=1.9e+02 Score=16.53 Aligned_cols=19 Identities=21% Similarity=0.636 Sum_probs=11.1
Q ss_pred CCcEEEEEecCCC-CcEEcC
Q 030956 15 LGQIFVASRLNVP-GAWQMP 33 (168)
Q Consensus 15 ~~~vLl~~r~~~~-g~w~lP 33 (168)
.|-..|+.-.++| |.|.|-
T Consensus 29 EG~MYLvaL~dYP~GiWFFN 48 (62)
T PF10781_consen 29 EGTMYLVALEDYPAGIWFFN 48 (62)
T ss_pred CcEEEEEEcCcCCcceEEEe
Confidence 4555566555555 677653
Done!