BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030957
         (168 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2OQQ|A Chain A, Crystal Structure Of Hy5 Leucine Zipper Homodimer From
           Arabidopsis Thaliana
 pdb|2OQQ|B Chain B, Crystal Structure Of Hy5 Leucine Zipper Homodimer From
           Arabidopsis Thaliana
          Length = 42

 Score = 73.6 bits (179), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 36/40 (90%), Positives = 38/40 (95%)

Query: 110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKN 149
           AYL+ELE RVKDLE KNSEL+ERLSTLQNENQMLRHILKN
Sbjct: 3   AYLSELENRVKDLENKNSELEERLSTLQNENQMLRHILKN 42


>pdb|1T2K|D Chain D, Structure Of The Dna Binding Domains Of Irf3, Atf-2 And
           Jun Bound To Dna
          Length = 61

 Score = 29.6 bits (65), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 14/48 (29%), Positives = 30/48 (62%)

Query: 100 SAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHIL 147
           +A ++R+++K ++  LE + +DL   N +L   ++ L+NE   L+ +L
Sbjct: 12  AASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59


>pdb|1CI6|A Chain A, Transcription Factor Atf4-CEBP BETA BZIP HETERODIMER
          Length = 63

 Score = 27.7 bits (60), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 28/49 (57%)

Query: 99  VSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHIL 147
            +A + R++K+A    L    K+LE+KN  L ER  +L  E Q L+ ++
Sbjct: 12  TAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.306    0.127    0.338 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,193,220
Number of Sequences: 62578
Number of extensions: 151891
Number of successful extensions: 297
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 283
Number of HSP's gapped (non-prelim): 16
length of query: 168
length of database: 14,973,337
effective HSP length: 92
effective length of query: 76
effective length of database: 9,216,161
effective search space: 700428236
effective search space used: 700428236
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 48 (23.1 bits)