Query 030957
Match_columns 168
No_of_seqs 201 out of 1116
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 07:06:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030957.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030957hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00338 BRLZ basic region l 99.6 2.1E-15 4.5E-20 102.8 9.5 63 86-148 2-64 (65)
2 PF00170 bZIP_1: bZIP transcri 99.6 3.5E-14 7.5E-19 96.5 9.3 62 86-147 2-63 (64)
3 PF07716 bZIP_2: Basic region 99.4 6.9E-12 1.5E-16 82.8 8.8 52 87-139 3-54 (54)
4 KOG4005 Transcription factor X 99.3 1E-11 2.2E-16 104.4 10.8 78 74-151 53-138 (292)
5 KOG3584 cAMP response element 99.3 3.5E-12 7.6E-17 109.6 6.7 54 84-137 286-339 (348)
6 KOG0709 CREB/ATF family transc 99.3 5E-12 1.1E-16 114.1 5.6 73 84-156 246-318 (472)
7 KOG4571 Activating transcripti 99.3 9E-11 2E-15 100.9 12.7 65 89-153 227-291 (294)
8 KOG4343 bZIP transcription fac 99.0 1.1E-09 2.5E-14 100.5 9.7 62 84-152 276-337 (655)
9 KOG3119 Basic region leucine z 98.9 3.2E-08 7E-13 84.5 13.5 70 83-152 188-257 (269)
10 KOG0837 Transcriptional activa 98.6 2.1E-07 4.5E-12 79.3 9.2 67 86-152 202-269 (279)
11 PF03131 bZIP_Maf: bZIP Maf tr 98.5 1.2E-09 2.6E-14 79.3 -6.8 64 87-150 28-91 (92)
12 KOG3863 bZIP transcription fac 98.0 9.8E-06 2.1E-10 76.0 5.8 63 89-151 490-552 (604)
13 KOG4196 bZIP transcription fac 97.9 0.00023 5E-09 55.2 10.5 77 79-155 42-119 (135)
14 KOG1414 Transcriptional activa 97.8 2E-06 4.4E-11 77.0 -2.9 81 79-159 144-228 (395)
15 KOG1414 Transcriptional activa 96.7 0.00063 1.4E-08 61.1 1.3 64 82-145 278-342 (395)
16 PF04102 SlyX: SlyX; InterPro 95.1 0.14 3E-06 35.2 6.9 49 109-157 3-51 (69)
17 PRK00736 hypothetical protein; 95.0 0.11 2.5E-06 35.8 6.3 41 110-150 5-45 (68)
18 PF08172 CASP_C: CASP C termin 94.9 0.17 3.7E-06 43.0 8.5 51 105-155 88-138 (248)
19 PF06005 DUF904: Protein of un 94.8 0.089 1.9E-06 36.8 5.3 42 110-151 18-59 (72)
20 TIGR02449 conserved hypothetic 94.7 0.18 3.9E-06 34.8 6.6 42 110-151 7-48 (65)
21 PF02183 HALZ: Homeobox associ 94.7 0.12 2.7E-06 33.0 5.4 41 114-154 2-42 (45)
22 PRK00295 hypothetical protein; 94.7 0.15 3.3E-06 35.1 6.3 43 110-152 5-47 (68)
23 PRK04325 hypothetical protein; 94.7 0.16 3.5E-06 35.6 6.5 42 110-151 9-50 (74)
24 PRK04406 hypothetical protein; 94.7 0.18 3.9E-06 35.5 6.7 44 110-153 11-54 (75)
25 PRK02119 hypothetical protein; 94.7 0.18 3.9E-06 35.3 6.6 45 109-153 8-52 (73)
26 PRK02793 phi X174 lysis protei 94.4 0.23 5E-06 34.6 6.6 44 109-152 7-50 (72)
27 PF06156 DUF972: Protein of un 93.6 0.36 7.8E-06 36.2 6.8 42 111-152 16-57 (107)
28 PRK00846 hypothetical protein; 93.2 0.43 9.3E-06 33.9 6.3 44 109-152 12-55 (77)
29 PRK10884 SH3 domain-containing 93.1 1.4 3E-05 36.6 10.1 43 109-151 124-166 (206)
30 PRK13169 DNA replication intia 93.1 0.5 1.1E-05 35.7 6.9 42 111-152 16-57 (110)
31 PF10226 DUF2216: Uncharacteri 93.0 1.6 3.6E-05 36.0 10.2 52 112-163 103-154 (195)
32 PRK15422 septal ring assembly 92.9 0.31 6.8E-06 34.8 5.2 43 110-152 18-67 (79)
33 PRK13922 rod shape-determining 92.6 0.37 7.9E-06 40.7 6.3 42 108-149 67-111 (276)
34 PF06156 DUF972: Protein of un 92.5 0.59 1.3E-05 35.0 6.6 46 110-155 8-53 (107)
35 PF10473 CENP-F_leu_zip: Leuci 92.4 1.8 4E-05 34.0 9.5 65 88-152 30-94 (140)
36 PF01166 TSC22: TSC-22/dip/bun 92.4 0.29 6.4E-06 33.1 4.3 31 117-147 14-44 (59)
37 PF15058 Speriolin_N: Sperioli 91.9 0.5 1.1E-05 39.1 6.0 39 113-152 8-46 (200)
38 PF15290 Syntaphilin: Golgi-lo 91.5 6.5 0.00014 34.5 12.6 47 109-155 88-141 (305)
39 PF10224 DUF2205: Predicted co 91.3 2.1 4.6E-05 30.6 8.0 47 106-152 19-65 (80)
40 COG2433 Uncharacterized conser 91.3 0.63 1.4E-05 44.4 6.7 43 110-152 422-464 (652)
41 TIGR02894 DNA_bind_RsfA transc 91.2 1.7 3.8E-05 34.9 8.2 49 103-151 104-152 (161)
42 PF06005 DUF904: Protein of un 91.2 1.5 3.2E-05 30.7 6.9 29 111-139 26-54 (72)
43 PF12709 Kinetocho_Slk19: Cent 90.9 2.5 5.4E-05 30.8 8.1 51 97-147 34-86 (87)
44 PRK00888 ftsB cell division pr 90.9 1 2.3E-05 33.4 6.4 43 106-148 30-72 (105)
45 PF05377 FlaC_arch: Flagella a 90.9 1.1 2.4E-05 30.0 5.8 37 112-148 2-38 (55)
46 TIGR00219 mreC rod shape-deter 90.7 0.77 1.7E-05 39.6 6.3 38 112-149 68-109 (283)
47 PRK13169 DNA replication intia 90.6 1.3 2.8E-05 33.5 6.6 45 111-155 9-53 (110)
48 KOG4343 bZIP transcription fac 90.3 0.28 6.1E-06 46.2 3.4 43 102-144 301-343 (655)
49 PRK13729 conjugal transfer pil 89.9 2.8 6.1E-05 39.0 9.6 57 95-151 67-124 (475)
50 PF12808 Mto2_bdg: Micro-tubul 89.9 1.3 2.8E-05 29.3 5.4 44 108-151 2-49 (52)
51 KOG3119 Basic region leucine z 89.7 1.1 2.3E-05 38.5 6.4 41 97-137 209-249 (269)
52 PF11365 DUF3166: Protein of u 89.4 2.9 6.2E-05 31.0 7.5 41 113-153 4-44 (96)
53 PF08826 DMPK_coil: DMPK coile 89.3 5.1 0.00011 27.2 8.5 49 97-145 12-60 (61)
54 PF13851 GAS: Growth-arrest sp 88.9 7.3 0.00016 32.0 10.4 64 86-149 69-132 (201)
55 PRK09413 IS2 repressor TnpA; R 88.7 2.9 6.2E-05 31.3 7.4 53 100-152 42-106 (121)
56 PF02183 HALZ: Homeobox associ 88.2 2.1 4.6E-05 27.3 5.4 36 113-148 8-43 (45)
57 PF04880 NUDE_C: NUDE protein, 88.2 0.81 1.7E-05 37.0 4.2 20 128-147 28-47 (166)
58 PF04977 DivIC: Septum formati 88.0 2.7 5.9E-05 28.3 6.3 42 107-148 21-62 (80)
59 COG3074 Uncharacterized protei 87.9 1.9 4.1E-05 30.4 5.4 40 111-150 19-65 (79)
60 PF03670 UPF0184: Uncharacteri 87.8 2.5 5.5E-05 30.5 6.2 43 110-152 33-75 (83)
61 PF11932 DUF3450: Protein of u 87.7 1.9 4E-05 36.1 6.4 47 106-152 52-98 (251)
62 PF05377 FlaC_arch: Flagella a 87.7 1.5 3.2E-05 29.3 4.6 35 112-146 9-43 (55)
63 PRK14127 cell division protein 87.6 2.4 5.2E-05 32.0 6.2 42 110-151 30-71 (109)
64 PRK00888 ftsB cell division pr 87.6 1.8 3.9E-05 32.1 5.6 35 111-145 28-62 (105)
65 PF09744 Jnk-SapK_ap_N: JNK_SA 87.6 6.2 0.00013 31.5 8.9 33 120-152 85-117 (158)
66 TIGR02894 DNA_bind_RsfA transc 87.3 2.3 5.1E-05 34.2 6.4 39 112-150 99-137 (161)
67 KOG3335 Predicted coiled-coil 87.3 1.8 3.9E-05 35.4 5.7 66 87-158 89-154 (181)
68 COG1382 GimC Prefoldin, chaper 87.1 4.9 0.00011 30.8 7.7 48 105-152 65-112 (119)
69 PF03980 Nnf1: Nnf1 ; InterPr 87.0 1.2 2.5E-05 32.7 4.3 34 106-139 76-109 (109)
70 PRK00736 hypothetical protein; 86.8 6.2 0.00013 27.1 7.5 44 109-152 11-54 (68)
71 PF10226 DUF2216: Uncharacteri 86.7 7.9 0.00017 32.1 9.3 64 86-152 20-83 (195)
72 PF06216 RTBV_P46: Rice tungro 86.7 1.6 3.5E-05 38.0 5.4 45 110-154 64-108 (389)
73 TIGR02449 conserved hypothetic 86.6 2.3 4.9E-05 29.4 5.2 27 124-150 7-33 (65)
74 PF00170 bZIP_1: bZIP transcri 86.6 2.7 5.9E-05 27.9 5.5 33 108-140 31-63 (64)
75 PRK04325 hypothetical protein; 86.5 6.4 0.00014 27.4 7.6 44 109-152 15-58 (74)
76 PF14775 NYD-SP28_assoc: Sperm 86.4 4.7 0.0001 27.1 6.6 29 121-149 30-58 (60)
77 COG4026 Uncharacterized protei 86.2 7.4 0.00016 33.4 9.1 31 117-147 142-172 (290)
78 PRK02793 phi X174 lysis protei 86.0 7.4 0.00016 27.0 7.6 44 109-152 14-57 (72)
79 PF11500 Cut12: Spindle pole b 85.9 9.6 0.00021 30.4 9.1 57 85-141 80-136 (152)
80 PRK04406 hypothetical protein; 85.8 7.5 0.00016 27.3 7.6 44 109-152 17-60 (75)
81 KOG4196 bZIP transcription fac 85.7 2.5 5.3E-05 33.1 5.5 33 120-152 77-109 (135)
82 PF08614 ATG16: Autophagy prot 85.7 17 0.00037 29.3 10.8 37 113-149 147-183 (194)
83 PRK02119 hypothetical protein; 85.5 7.9 0.00017 27.0 7.6 44 109-152 15-58 (73)
84 PF05103 DivIVA: DivIVA protei 85.4 0.49 1.1E-05 35.2 1.6 42 110-151 25-66 (131)
85 COG2900 SlyX Uncharacterized p 85.4 5.8 0.00013 27.9 6.8 43 110-152 8-50 (72)
86 PF04977 DivIC: Septum formati 85.2 3.1 6.7E-05 28.1 5.4 30 121-150 21-50 (80)
87 PRK00295 hypothetical protein; 85.0 6.4 0.00014 27.0 6.9 43 109-151 11-53 (68)
88 COG4026 Uncharacterized protei 84.9 4 8.7E-05 35.0 6.9 45 106-150 159-203 (290)
89 PF10186 Atg14: UV radiation r 84.7 14 0.0003 30.7 10.1 19 115-133 68-86 (302)
90 PRK10884 SH3 domain-containing 84.5 10 0.00022 31.4 9.1 40 108-147 130-169 (206)
91 COG4467 Regulator of replicati 84.5 3.9 8.4E-05 31.0 5.9 39 111-149 9-54 (114)
92 PF08232 Striatin: Striatin fa 84.0 14 0.00031 28.4 9.2 60 92-151 14-73 (134)
93 COG3883 Uncharacterized protei 83.8 15 0.00031 31.9 10.0 64 88-151 37-100 (265)
94 PRK15422 septal ring assembly 83.7 5.9 0.00013 28.4 6.3 35 112-146 6-40 (79)
95 PF04102 SlyX: SlyX; InterPro 83.4 5.6 0.00012 27.2 6.0 43 110-152 11-53 (69)
96 PF12709 Kinetocho_Slk19: Cent 83.4 7.4 0.00016 28.3 6.9 35 108-142 40-74 (87)
97 PRK11637 AmiB activator; Provi 83.4 11 0.00025 33.8 9.7 15 110-124 75-89 (428)
98 PF07926 TPR_MLP1_2: TPR/MLP1/ 83.2 12 0.00026 28.4 8.4 36 115-150 96-131 (132)
99 PF01166 TSC22: TSC-22/dip/bun 83.1 2.5 5.3E-05 28.7 4.0 23 109-131 20-42 (59)
100 PF11365 DUF3166: Protein of u 83.0 7.6 0.00017 28.7 6.9 43 110-152 8-50 (96)
101 PF12718 Tropomyosin_1: Tropom 82.9 5.6 0.00012 31.0 6.6 31 115-145 33-63 (143)
102 PRK11637 AmiB activator; Provi 82.6 13 0.00028 33.5 9.7 11 129-139 108-118 (428)
103 PF05812 Herpes_BLRF2: Herpesv 82.3 2.5 5.4E-05 32.4 4.2 26 127-152 6-31 (118)
104 PF15556 Zwint: ZW10 interacto 82.3 22 0.00048 30.1 10.1 53 93-145 117-169 (252)
105 cd00632 Prefoldin_beta Prefold 82.3 8.6 0.00019 28.0 7.0 44 108-151 61-104 (105)
106 PF05266 DUF724: Protein of un 81.4 19 0.0004 29.5 9.4 50 94-143 94-143 (190)
107 PF07334 IFP_35_N: Interferon- 81.2 4 8.6E-05 29.0 4.6 28 119-146 2-29 (76)
108 PF01920 Prefoldin_2: Prefoldi 81.2 9 0.0002 27.1 6.7 42 109-150 61-102 (106)
109 TIGR03752 conj_TIGR03752 integ 81.2 6.9 0.00015 36.5 7.4 27 122-148 114-140 (472)
110 PF05700 BCAS2: Breast carcino 81.1 27 0.00059 28.8 10.4 41 112-152 177-217 (221)
111 PRK09343 prefoldin subunit bet 80.9 12 0.00026 28.2 7.6 40 112-151 73-112 (121)
112 PRK00846 hypothetical protein; 80.8 15 0.00033 26.0 7.6 44 110-153 20-63 (77)
113 PF04899 MbeD_MobD: MbeD/MobD 80.7 10 0.00023 26.4 6.6 40 112-151 30-69 (70)
114 TIGR02209 ftsL_broad cell divi 80.7 9.8 0.00021 26.2 6.6 32 107-138 28-59 (85)
115 PF07989 Microtub_assoc: Micro 80.7 5.3 0.00011 28.0 5.2 34 119-152 38-71 (75)
116 smart00338 BRLZ basic region l 80.6 7.5 0.00016 25.8 5.7 34 118-151 27-60 (65)
117 PF13815 Dzip-like_N: Iguana/D 79.9 9.2 0.0002 28.6 6.6 35 112-146 82-116 (118)
118 COG4942 Membrane-bound metallo 79.9 16 0.00034 33.7 9.2 63 89-151 38-100 (420)
119 PF14282 FlxA: FlxA-like prote 79.5 10 0.00023 28.0 6.7 15 129-143 56-70 (106)
120 PRK10803 tol-pal system protei 79.4 6.2 0.00013 33.6 6.2 39 111-149 55-93 (263)
121 PF10805 DUF2730: Protein of u 79.2 20 0.00043 26.5 8.1 44 107-150 46-91 (106)
122 PF04728 LPP: Lipoprotein leuc 78.8 13 0.00027 25.0 6.2 33 111-143 4-36 (56)
123 PF08317 Spc7: Spc7 kinetochor 78.7 21 0.00046 31.1 9.5 53 95-147 214-267 (325)
124 PF12325 TMF_TATA_bd: TATA ele 78.7 8.8 0.00019 29.3 6.2 42 88-129 22-63 (120)
125 PF07106 TBPIP: Tat binding pr 78.7 10 0.00022 29.8 6.8 44 109-152 85-137 (169)
126 PF04728 LPP: Lipoprotein leuc 78.7 10 0.00022 25.4 5.8 37 112-148 12-48 (56)
127 TIGR02209 ftsL_broad cell divi 78.7 11 0.00024 25.9 6.3 34 118-151 25-58 (85)
128 KOG4797 Transcriptional regula 78.6 9.6 0.00021 29.1 6.3 31 114-144 64-94 (123)
129 TIGR02338 gimC_beta prefoldin, 78.5 13 0.00029 27.3 7.0 43 108-150 65-107 (110)
130 KOG0971 Microtubule-associated 78.3 22 0.00048 36.1 10.2 57 93-149 284-357 (1243)
131 PF14915 CCDC144C: CCDC144C pr 78.3 18 0.00038 32.0 8.7 57 96-152 185-242 (305)
132 PF09726 Macoilin: Transmembra 78.2 21 0.00046 34.8 10.1 32 114-145 549-580 (697)
133 PF15035 Rootletin: Ciliary ro 78.0 8 0.00017 31.4 6.2 38 114-151 71-108 (182)
134 PF14916 CCDC92: Coiled-coil d 77.8 3.9 8.4E-05 27.8 3.6 38 110-147 3-44 (60)
135 PF12329 TMF_DNA_bd: TATA elem 77.8 10 0.00022 26.4 5.9 39 110-148 33-71 (74)
136 PTZ00454 26S protease regulato 77.7 8.9 0.00019 34.6 7.0 37 115-151 27-63 (398)
137 COG1792 MreC Cell shape-determ 77.1 8 0.00017 33.4 6.3 42 108-149 64-108 (284)
138 PF12718 Tropomyosin_1: Tropom 77.0 12 0.00027 29.1 6.8 20 129-148 40-59 (143)
139 PF08614 ATG16: Autophagy prot 77.0 33 0.00072 27.6 9.6 48 104-151 124-171 (194)
140 PF10805 DUF2730: Protein of u 76.7 5.8 0.00013 29.3 4.6 42 113-154 45-88 (106)
141 PF11382 DUF3186: Protein of u 76.5 7.4 0.00016 33.9 6.0 45 110-154 32-76 (308)
142 PF05812 Herpes_BLRF2: Herpesv 76.5 5.4 0.00012 30.6 4.5 27 109-135 2-28 (118)
143 PF05300 DUF737: Protein of un 76.1 13 0.00029 30.5 7.0 48 97-144 121-168 (187)
144 COG4467 Regulator of replicati 76.1 11 0.00024 28.7 5.9 26 112-137 24-49 (114)
145 COG3074 Uncharacterized protei 76.0 10 0.00022 26.8 5.3 18 120-137 49-66 (79)
146 PF05529 Bap31: B-cell recepto 75.8 28 0.0006 27.8 8.8 37 116-152 153-189 (192)
147 PF08537 NBP1: Fungal Nap bind 75.5 33 0.00071 30.6 9.7 61 89-149 122-207 (323)
148 PF14662 CCDC155: Coiled-coil 74.9 13 0.00027 30.9 6.5 39 111-149 68-106 (193)
149 PHA03162 hypothetical protein; 74.8 4.5 9.7E-05 31.7 3.7 21 128-148 17-37 (135)
150 PF12711 Kinesin-relat_1: Kine 74.3 13 0.00027 27.0 5.7 35 118-152 25-65 (86)
151 PF04880 NUDE_C: NUDE protein, 74.2 4 8.7E-05 33.0 3.4 29 120-149 27-55 (166)
152 PF11559 ADIP: Afadin- and alp 74.2 37 0.00081 26.0 10.0 48 97-144 53-100 (151)
153 KOG1962 B-cell receptor-associ 74.1 10 0.00022 31.9 6.0 42 106-147 168-209 (216)
154 PF11932 DUF3450: Protein of u 74.1 34 0.00073 28.6 9.2 28 111-138 71-98 (251)
155 PF01486 K-box: K-box region; 73.7 9.2 0.0002 27.6 5.0 28 121-148 72-99 (100)
156 PHA03162 hypothetical protein; 73.5 4.9 0.00011 31.4 3.6 26 108-133 11-36 (135)
157 PF09755 DUF2046: Uncharacteri 73.2 41 0.00089 29.8 9.7 24 127-150 181-204 (310)
158 TIGR03752 conj_TIGR03752 integ 73.1 10 0.00023 35.3 6.2 33 122-154 107-139 (472)
159 PHA03155 hypothetical protein; 73.0 5.3 0.00012 30.5 3.6 21 128-148 12-32 (115)
160 PF09726 Macoilin: Transmembra 73.0 23 0.00049 34.6 8.8 40 113-152 541-580 (697)
161 cd00890 Prefoldin Prefoldin is 72.9 17 0.00038 26.5 6.4 38 113-150 90-127 (129)
162 PF07716 bZIP_2: Basic region 72.5 14 0.00031 23.7 5.2 25 126-150 27-51 (54)
163 PF12329 TMF_DNA_bd: TATA elem 72.2 24 0.00052 24.5 6.6 43 108-150 10-52 (74)
164 PRK13923 putative spore coat p 72.0 18 0.00039 29.4 6.7 44 109-152 110-153 (170)
165 PHA03155 hypothetical protein; 72.0 5.6 0.00012 30.4 3.5 25 111-135 9-33 (115)
166 KOG2483 Upstream transcription 71.7 12 0.00025 31.8 5.8 39 106-151 101-139 (232)
167 TIGR01242 26Sp45 26S proteasom 71.0 11 0.00024 32.9 5.8 39 114-152 3-41 (364)
168 PF07407 Seadorna_VP6: Seadorn 70.9 9.7 0.00021 34.3 5.3 28 112-139 34-61 (420)
169 PF10211 Ax_dynein_light: Axon 70.7 47 0.001 26.9 9.0 19 114-132 124-142 (189)
170 PF10186 Atg14: UV radiation r 70.6 40 0.00086 27.9 8.8 41 106-146 66-106 (302)
171 PRK10803 tol-pal system protei 70.6 53 0.0012 27.9 9.7 45 107-151 58-102 (263)
172 PF08232 Striatin: Striatin fa 70.4 41 0.00088 25.9 8.1 47 112-158 27-73 (134)
173 KOG0977 Nuclear envelope prote 70.0 29 0.00063 33.0 8.5 38 112-149 150-187 (546)
174 PRK13922 rod shape-determining 69.8 12 0.00026 31.5 5.6 36 117-152 69-107 (276)
175 PF11577 NEMO: NF-kappa-B esse 69.7 15 0.00033 25.4 5.0 35 114-151 3-37 (68)
176 PRK09039 hypothetical protein; 69.6 45 0.00098 29.5 9.3 30 122-151 128-157 (343)
177 PRK13729 conjugal transfer pil 69.6 14 0.00031 34.5 6.3 21 113-133 100-120 (475)
178 PF12808 Mto2_bdg: Micro-tubul 69.2 9.6 0.00021 25.1 3.8 32 106-137 18-49 (52)
179 COG4420 Predicted membrane pro 69.1 30 0.00065 28.6 7.5 62 92-153 107-170 (191)
180 PF04201 TPD52: Tumour protein 69.1 8.5 0.00018 31.0 4.2 30 118-147 37-66 (162)
181 PRK03992 proteasome-activating 68.9 20 0.00042 32.0 7.0 40 112-151 10-49 (389)
182 KOG1853 LIS1-interacting prote 68.9 56 0.0012 28.6 9.4 59 89-147 24-82 (333)
183 PF06810 Phage_GP20: Phage min 68.9 36 0.00079 26.8 7.8 46 104-149 28-80 (155)
184 PF14645 Chibby: Chibby family 68.7 9.6 0.00021 28.9 4.3 18 118-135 79-96 (116)
185 PRK15178 Vi polysaccharide exp 68.5 42 0.00092 31.0 9.1 70 88-157 252-340 (434)
186 PF06632 XRCC4: DNA double-str 68.4 22 0.00048 31.7 7.1 20 115-134 149-168 (342)
187 PF11180 DUF2968: Protein of u 68.3 68 0.0015 26.6 10.0 31 118-148 155-185 (192)
188 cd07429 Cby_like Chibby, a nuc 68.1 16 0.00035 27.6 5.3 22 118-139 80-101 (108)
189 PF10779 XhlA: Haemolysin XhlA 68.1 31 0.00068 23.4 6.4 39 112-150 15-53 (71)
190 PRK03947 prefoldin subunit alp 68.0 27 0.00059 26.4 6.7 32 119-150 103-134 (140)
191 TIGR03689 pup_AAA proteasome A 68.0 16 0.00035 34.3 6.4 41 112-152 3-43 (512)
192 PRK11546 zraP zinc resistance 68.0 55 0.0012 25.8 8.5 30 84-113 44-73 (143)
193 PF07412 Geminin: Geminin; In 67.8 18 0.00039 30.1 6.0 17 136-152 154-170 (200)
194 PF02403 Seryl_tRNA_N: Seryl-t 67.6 17 0.00037 26.2 5.3 31 121-151 71-101 (108)
195 PF15619 Lebercilin: Ciliary p 67.6 12 0.00025 30.8 4.8 13 137-149 67-79 (194)
196 smart00787 Spc7 Spc7 kinetocho 67.6 57 0.0012 28.7 9.4 50 97-146 211-261 (312)
197 KOG0483 Transcription factor H 67.5 9.1 0.0002 31.7 4.2 55 98-152 92-147 (198)
198 PF07106 TBPIP: Tat binding pr 67.4 17 0.00036 28.5 5.6 26 112-137 81-106 (169)
199 PF15556 Zwint: ZW10 interacto 67.4 66 0.0014 27.3 9.2 57 95-151 112-168 (252)
200 PF08172 CASP_C: CASP C termin 67.4 14 0.00031 31.4 5.5 49 89-138 87-135 (248)
201 smart00340 HALZ homeobox assoc 67.3 20 0.00043 22.9 4.7 25 129-153 10-34 (44)
202 KOG1029 Endocytic adaptor prot 67.2 42 0.00091 33.7 9.1 23 129-151 435-457 (1118)
203 PF14645 Chibby: Chibby family 66.6 17 0.00036 27.6 5.2 31 113-143 81-111 (116)
204 PF10205 KLRAQ: Predicted coil 66.6 52 0.0011 24.6 9.1 47 95-141 24-71 (102)
205 PF10883 DUF2681: Protein of u 66.5 18 0.0004 26.2 5.1 24 115-138 28-51 (87)
206 PF13815 Dzip-like_N: Iguana/D 66.5 25 0.00055 26.2 6.1 39 114-152 77-115 (118)
207 COG3883 Uncharacterized protei 66.4 17 0.00038 31.4 5.9 49 101-152 64-112 (265)
208 KOG4010 Coiled-coil protein TP 66.2 11 0.00023 31.4 4.3 34 114-147 48-81 (208)
209 PF04849 HAP1_N: HAP1 N-termin 66.0 15 0.00033 32.4 5.5 30 110-139 160-189 (306)
210 PF14389 Lzipper-MIP1: Leucine 65.8 40 0.00088 24.1 6.8 24 128-151 58-81 (88)
211 PRK09413 IS2 repressor TnpA; R 65.5 29 0.00063 25.7 6.3 34 112-145 73-106 (121)
212 PRK11239 hypothetical protein; 65.3 13 0.00028 31.3 4.7 27 112-138 185-211 (215)
213 PF13851 GAS: Growth-arrest sp 65.2 28 0.0006 28.5 6.7 27 121-147 52-78 (201)
214 COG1382 GimC Prefoldin, chaper 65.1 15 0.00033 28.2 4.7 35 123-157 76-110 (119)
215 KOG0993 Rab5 GTPase effector R 65.1 44 0.00095 31.1 8.3 32 87-118 98-129 (542)
216 PF07795 DUF1635: Protein of u 65.1 39 0.00085 28.4 7.5 55 93-147 16-70 (214)
217 PF04201 TPD52: Tumour protein 64.9 28 0.00061 28.1 6.4 29 111-139 37-65 (162)
218 PF07558 Shugoshin_N: Shugoshi 64.8 8.9 0.00019 24.4 2.9 21 127-147 24-44 (46)
219 PF09789 DUF2353: Uncharacteri 64.7 22 0.00048 31.6 6.3 44 113-156 75-118 (319)
220 PF12999 PRKCSH-like: Glucosid 64.5 53 0.0011 26.8 8.0 33 106-138 142-174 (176)
221 KOG1318 Helix loop helix trans 64.4 11 0.00025 34.5 4.6 31 112-142 292-322 (411)
222 KOG4370 Ral-GTPase effector RL 64.2 25 0.00054 32.8 6.6 41 112-152 415-455 (514)
223 PRK10361 DNA recombination pro 63.9 97 0.0021 29.0 10.6 49 110-158 147-199 (475)
224 PLN02320 seryl-tRNA synthetase 63.7 17 0.00036 34.2 5.6 53 95-147 115-167 (502)
225 smart00340 HALZ homeobox assoc 63.7 26 0.00055 22.4 4.7 20 118-137 13-32 (44)
226 PRK14140 heat shock protein Gr 63.6 30 0.00066 28.4 6.5 6 115-120 56-61 (191)
227 PRK14162 heat shock protein Gr 63.5 30 0.00064 28.6 6.5 24 110-133 53-76 (194)
228 KOG0288 WD40 repeat protein Ti 63.4 80 0.0017 29.3 9.7 29 108-136 46-74 (459)
229 PF04999 FtsL: Cell division p 63.2 33 0.00072 24.3 6.0 27 112-138 44-70 (97)
230 COG1730 GIM5 Predicted prefold 63.2 31 0.00068 27.2 6.3 35 113-147 104-138 (145)
231 PF04420 CHD5: CHD5-like prote 62.4 32 0.0007 27.1 6.3 23 128-150 70-92 (161)
232 PF15070 GOLGA2L5: Putative go 62.3 72 0.0016 30.8 9.7 47 106-152 118-174 (617)
233 PRK09343 prefoldin subunit bet 62.2 34 0.00073 25.8 6.2 35 113-147 81-115 (121)
234 COG2433 Uncharacterized conser 61.9 27 0.00058 33.8 6.6 8 143-150 500-507 (652)
235 PRK14154 heat shock protein Gr 61.7 29 0.00063 29.0 6.2 23 112-134 68-90 (208)
236 PF02994 Transposase_22: L1 tr 61.7 26 0.00056 31.3 6.3 43 110-152 144-186 (370)
237 PF06698 DUF1192: Protein of u 61.6 18 0.00039 24.5 4.0 23 112-134 23-45 (59)
238 KOG3650 Predicted coiled-coil 61.5 29 0.00063 26.1 5.5 41 111-151 64-104 (120)
239 PF09486 HrpB7: Bacterial type 61.5 39 0.00085 27.0 6.6 43 109-151 78-120 (158)
240 PF06785 UPF0242: Uncharacteri 61.5 23 0.0005 32.0 5.8 35 106-140 123-157 (401)
241 PF11559 ADIP: Afadin- and alp 61.4 71 0.0015 24.4 10.3 31 106-136 76-106 (151)
242 PF08286 Spc24: Spc24 subunit 61.3 2.7 5.8E-05 31.5 0.0 38 114-151 3-40 (118)
243 PF13600 DUF4140: N-terminal d 61.3 29 0.00063 24.8 5.5 20 128-147 81-100 (104)
244 PF14197 Cep57_CLD_2: Centroso 61.3 27 0.0006 24.0 5.1 18 132-149 48-65 (69)
245 PF04999 FtsL: Cell division p 61.2 15 0.00033 26.1 4.0 34 118-151 36-69 (97)
246 COG1579 Zn-ribbon protein, pos 61.0 1.1E+02 0.0023 26.2 9.6 27 121-147 49-75 (239)
247 PF08317 Spc7: Spc7 kinetochor 61.0 65 0.0014 28.0 8.6 21 129-149 242-262 (325)
248 PF05529 Bap31: B-cell recepto 61.0 62 0.0013 25.8 7.9 31 109-139 160-190 (192)
249 TIGR00219 mreC rod shape-deter 60.8 34 0.00073 29.5 6.7 35 118-152 67-105 (283)
250 KOG0933 Structural maintenance 60.7 71 0.0015 32.8 9.5 48 106-153 811-858 (1174)
251 cd07429 Cby_like Chibby, a nuc 60.5 30 0.00064 26.1 5.5 31 120-150 75-105 (108)
252 PF10481 CENP-F_N: Cenp-F N-te 60.5 58 0.0013 28.7 8.0 58 90-147 19-76 (307)
253 PF04849 HAP1_N: HAP1 N-termin 60.1 36 0.00078 30.1 6.7 44 107-150 224-267 (306)
254 PF08961 DUF1875: Domain of un 59.9 3 6.4E-05 35.4 0.0 34 110-143 129-162 (243)
255 PF02996 Prefoldin: Prefoldin 59.8 44 0.00095 24.2 6.3 30 119-148 86-115 (120)
256 TIGR03185 DNA_S_dndD DNA sulfu 59.8 24 0.00052 33.6 6.1 46 111-156 210-255 (650)
257 PRK14148 heat shock protein Gr 59.7 39 0.00085 27.8 6.6 17 113-129 57-73 (195)
258 PF10224 DUF2205: Predicted co 59.5 62 0.0013 23.1 6.7 27 111-137 38-64 (80)
259 cd00632 Prefoldin_beta Prefold 59.5 37 0.0008 24.6 5.8 33 111-143 71-103 (105)
260 PF00038 Filament: Intermediat 59.4 84 0.0018 26.6 8.8 27 122-148 221-247 (312)
261 PF01763 Herpes_UL6: Herpesvir 59.3 27 0.00059 33.3 6.2 43 110-152 363-405 (557)
262 PF14077 WD40_alt: Alternative 59.3 8.6 0.00019 24.9 2.1 21 110-130 18-38 (48)
263 PF11471 Sugarporin_N: Maltopo 59.2 21 0.00046 24.0 4.1 28 115-142 30-57 (60)
264 PRK14158 heat shock protein Gr 59.2 41 0.00088 27.7 6.6 25 109-133 53-77 (194)
265 KOG1853 LIS1-interacting prote 59.1 75 0.0016 27.9 8.3 40 109-148 132-181 (333)
266 PF09304 Cortex-I_coil: Cortex 59.1 76 0.0016 24.0 9.9 55 94-148 21-75 (107)
267 PF04859 DUF641: Plant protein 59.0 21 0.00045 27.7 4.6 36 111-146 95-130 (131)
268 TIGR02338 gimC_beta prefoldin, 59.0 37 0.00081 24.9 5.8 31 113-143 77-107 (110)
269 PF04568 IATP: Mitochondrial A 58.9 72 0.0016 23.7 7.6 10 129-138 88-97 (100)
270 PF07558 Shugoshin_N: Shugoshi 58.8 13 0.00029 23.6 2.9 24 110-133 21-44 (46)
271 PF04156 IncA: IncA protein; 58.7 88 0.0019 24.6 10.3 29 102-130 122-150 (191)
272 PRK14872 rod shape-determining 58.6 24 0.00053 31.5 5.5 39 110-148 57-98 (337)
273 PF14197 Cep57_CLD_2: Centroso 58.5 28 0.0006 24.0 4.7 20 124-143 47-66 (69)
274 PRK14143 heat shock protein Gr 58.5 42 0.00091 28.5 6.7 21 112-132 83-103 (238)
275 PF07926 TPR_MLP1_2: TPR/MLP1/ 58.3 72 0.0016 24.1 7.4 40 88-128 45-84 (132)
276 TIGR00293 prefoldin, archaeal 58.2 52 0.0011 24.3 6.5 31 117-147 93-123 (126)
277 PF14916 CCDC92: Coiled-coil d 58.2 40 0.00086 22.9 5.3 40 115-154 1-44 (60)
278 COG1730 GIM5 Predicted prefold 58.1 48 0.001 26.1 6.6 47 110-156 6-52 (145)
279 KOG1055 GABA-B ion channel rec 58.0 3.4 7.4E-05 40.8 0.1 63 89-151 726-793 (865)
280 PF07989 Microtub_assoc: Micro 57.8 25 0.00054 24.6 4.4 25 112-136 2-26 (75)
281 PRK03947 prefoldin subunit alp 57.8 45 0.00098 25.2 6.3 45 108-152 4-48 (140)
282 PF05008 V-SNARE: Vesicle tran 57.6 31 0.00067 23.4 4.9 23 126-148 56-78 (79)
283 PRK14139 heat shock protein Gr 57.5 42 0.00092 27.4 6.4 19 113-131 49-67 (185)
284 PRK05431 seryl-tRNA synthetase 57.4 33 0.00071 31.2 6.3 35 113-147 69-103 (425)
285 PF09755 DUF2046: Uncharacteri 57.4 1.2E+02 0.0025 27.0 9.4 60 89-148 113-173 (310)
286 COG3879 Uncharacterized protei 57.3 37 0.0008 29.2 6.2 18 135-152 93-110 (247)
287 KOG0982 Centrosomal protein Nu 57.2 40 0.00087 31.4 6.7 23 129-151 302-324 (502)
288 KOG1962 B-cell receptor-associ 57.0 38 0.00083 28.5 6.1 50 109-158 164-213 (216)
289 KOG4643 Uncharacterized coiled 57.0 85 0.0018 32.3 9.4 64 88-151 372-435 (1195)
290 PF13863 DUF4200: Domain of un 56.6 76 0.0016 23.2 9.6 39 99-137 70-108 (126)
291 PF11221 Med21: Subunit 21 of 56.5 48 0.001 25.6 6.3 37 115-151 102-138 (144)
292 PF12999 PRKCSH-like: Glucosid 56.4 1.1E+02 0.0024 25.0 8.9 21 130-150 152-172 (176)
293 PRK14151 heat shock protein Gr 56.3 38 0.00082 27.4 5.8 13 115-127 39-51 (176)
294 PF14662 CCDC155: Coiled-coil 56.3 40 0.00086 28.0 6.0 24 112-135 10-33 (193)
295 PF12777 MT: Microtubule-bindi 56.2 68 0.0015 28.1 7.9 61 90-150 222-282 (344)
296 PF06210 DUF1003: Protein of u 55.9 84 0.0018 23.5 8.0 47 94-145 55-101 (108)
297 PF15254 CCDC14: Coiled-coil d 55.8 37 0.00079 33.8 6.5 37 114-150 445-481 (861)
298 PF10018 Med4: Vitamin-D-recep 55.8 55 0.0012 26.3 6.7 39 113-151 25-63 (188)
299 TIGR03495 phage_LysB phage lys 55.7 65 0.0014 25.1 6.9 23 123-145 74-96 (135)
300 PLN02678 seryl-tRNA synthetase 55.5 51 0.0011 30.5 7.3 37 111-147 72-108 (448)
301 COG1729 Uncharacterized protei 55.3 33 0.00071 29.7 5.6 35 112-147 58-92 (262)
302 PF02388 FemAB: FemAB family; 55.1 51 0.0011 29.6 7.1 20 129-148 278-297 (406)
303 PTZ00454 26S protease regulato 55.1 66 0.0014 29.0 7.8 37 109-145 28-64 (398)
304 PF10883 DUF2681: Protein of u 55.0 79 0.0017 22.9 6.7 40 114-153 20-59 (87)
305 PF13600 DUF4140: N-terminal d 55.0 43 0.00094 23.9 5.5 32 111-142 71-102 (104)
306 KOG0995 Centromere-associated 54.9 63 0.0014 31.0 7.8 46 107-152 277-322 (581)
307 TIGR00414 serS seryl-tRNA synt 54.9 36 0.00079 30.8 6.1 36 112-147 71-106 (418)
308 PF07412 Geminin: Geminin; In 54.8 53 0.0011 27.4 6.5 25 122-146 130-154 (200)
309 PHA03308 transcriptional regul 54.6 22 0.00047 35.6 4.8 17 75-91 1292-1308(1463)
310 PRK14127 cell division protein 54.6 54 0.0012 24.7 6.1 32 112-143 39-70 (109)
311 KOG4603 TBP-1 interacting prot 54.6 58 0.0013 26.9 6.6 47 108-154 98-146 (201)
312 PF10211 Ax_dynein_light: Axon 54.1 1.2E+02 0.0025 24.6 9.9 30 106-135 123-152 (189)
313 COG4372 Uncharacterized protei 54.0 1.7E+02 0.0037 27.2 10.1 51 94-144 128-178 (499)
314 PRK14872 rod shape-determining 53.8 41 0.00089 30.1 6.1 32 117-148 57-88 (337)
315 KOG0818 GTPase-activating prot 53.7 25 0.00055 33.4 5.0 44 109-152 422-465 (669)
316 PRK14160 heat shock protein Gr 53.7 61 0.0013 27.1 6.8 32 113-144 64-95 (211)
317 KOG3584 cAMP response element 53.5 43 0.00093 29.8 6.1 25 128-152 316-340 (348)
318 PRK09039 hypothetical protein; 53.4 1.3E+02 0.0029 26.5 9.3 22 115-136 156-177 (343)
319 PF07047 OPA3: Optic atrophy 3 53.3 42 0.00091 25.7 5.5 17 117-133 112-128 (134)
320 KOG4643 Uncharacterized coiled 53.2 38 0.00083 34.7 6.3 36 108-143 528-565 (1195)
321 PF01486 K-box: K-box region; 53.1 82 0.0018 22.5 7.1 35 100-134 61-99 (100)
322 KOG4797 Transcriptional regula 53.0 37 0.0008 25.9 4.9 30 102-131 66-95 (123)
323 PF03962 Mnd1: Mnd1 family; I 52.8 79 0.0017 25.6 7.2 45 105-149 105-153 (188)
324 PF10146 zf-C4H2: Zinc finger- 52.7 64 0.0014 27.2 6.9 39 114-152 64-102 (230)
325 PF05103 DivIVA: DivIVA protei 52.7 5.3 0.00012 29.5 0.4 39 110-148 32-70 (131)
326 KOG1760 Molecular chaperone Pr 52.6 59 0.0013 25.3 6.0 23 97-119 30-53 (131)
327 KOG1319 bHLHZip transcription 52.6 90 0.0019 26.2 7.5 49 104-152 106-154 (229)
328 KOG0977 Nuclear envelope prote 52.5 55 0.0012 31.2 7.0 36 104-139 36-71 (546)
329 PF03980 Nnf1: Nnf1 ; InterPr 52.4 42 0.00091 24.4 5.1 31 121-151 77-107 (109)
330 cd00890 Prefoldin Prefoldin is 52.3 53 0.0012 23.9 5.7 32 112-143 96-127 (129)
331 PRK14155 heat shock protein Gr 52.1 43 0.00093 27.9 5.7 20 112-131 29-48 (208)
332 PRK14011 prefoldin subunit alp 51.8 64 0.0014 25.3 6.3 39 98-139 86-124 (144)
333 PF13118 DUF3972: Protein of u 51.8 79 0.0017 24.5 6.7 43 108-150 83-125 (126)
334 KOG0804 Cytoplasmic Zn-finger 51.8 1.8E+02 0.0039 27.3 10.0 22 130-151 427-448 (493)
335 PRK10265 chaperone-modulator p 51.7 24 0.00052 25.7 3.7 25 127-151 74-98 (101)
336 PRK01203 prefoldin subunit alp 51.6 77 0.0017 24.6 6.7 40 113-152 3-42 (130)
337 PRK14147 heat shock protein Gr 51.4 51 0.0011 26.5 5.9 15 114-128 36-50 (172)
338 cd00584 Prefoldin_alpha Prefol 51.4 92 0.002 23.0 7.0 24 114-137 98-121 (129)
339 PRK03992 proteasome-activating 51.2 50 0.0011 29.4 6.3 36 110-145 15-50 (389)
340 PRK14163 heat shock protein Gr 51.0 56 0.0012 27.4 6.2 19 113-131 57-75 (214)
341 PF04012 PspA_IM30: PspA/IM30 50.9 70 0.0015 25.8 6.7 29 119-147 114-142 (221)
342 KOG2751 Beclin-like protein [S 50.7 52 0.0011 30.5 6.4 38 114-151 180-217 (447)
343 PF05769 DUF837: Protein of un 50.5 68 0.0015 26.0 6.5 22 127-148 156-177 (181)
344 COG4942 Membrane-bound metallo 50.5 1.9E+02 0.0042 26.7 10.0 45 101-145 57-101 (420)
345 KOG0250 DNA repair protein RAD 50.4 1.6E+02 0.0034 30.5 10.1 53 100-152 369-429 (1074)
346 PF01763 Herpes_UL6: Herpesvir 50.4 79 0.0017 30.2 7.7 38 109-146 369-406 (557)
347 PF05565 Sipho_Gp157: Siphovir 50.2 73 0.0016 25.1 6.5 41 110-150 47-87 (162)
348 PF09738 DUF2051: Double stran 50.1 1E+02 0.0022 27.1 8.0 65 86-150 89-166 (302)
349 PHA00728 hypothetical protein 49.9 24 0.00052 27.5 3.5 22 117-138 5-26 (151)
350 COG1579 Zn-ribbon protein, pos 49.8 1.2E+02 0.0026 25.9 8.1 42 90-131 32-73 (239)
351 PF09304 Cortex-I_coil: Cortex 49.8 91 0.002 23.5 6.6 53 96-148 15-68 (107)
352 COG1842 PspA Phage shock prote 49.7 69 0.0015 26.9 6.6 11 129-139 125-135 (225)
353 TIGR01834 PHA_synth_III_E poly 49.6 25 0.00054 31.3 4.1 30 123-152 288-317 (320)
354 PRK13182 racA polar chromosome 49.1 86 0.0019 25.3 6.8 23 130-152 124-146 (175)
355 PF06818 Fez1: Fez1; InterPro 48.9 1.2E+02 0.0026 25.3 7.7 44 107-150 63-106 (202)
356 PRK14145 heat shock protein Gr 48.8 76 0.0016 26.2 6.6 21 111-131 60-80 (196)
357 PF10779 XhlA: Haemolysin XhlA 48.6 83 0.0018 21.3 7.2 40 111-150 7-46 (71)
358 PF14282 FlxA: FlxA-like prote 48.5 1.1E+02 0.0023 22.5 6.8 21 130-150 50-70 (106)
359 KOG4005 Transcription factor X 48.4 59 0.0013 28.1 6.0 75 73-147 56-148 (292)
360 PRK14141 heat shock protein Gr 48.3 54 0.0012 27.3 5.7 11 115-125 50-60 (209)
361 PRK04863 mukB cell division pr 48.2 1.7E+02 0.0036 31.3 10.3 23 88-110 320-342 (1486)
362 COG3132 Uncharacterized protei 48.1 26 0.00057 29.0 3.7 22 115-136 190-211 (215)
363 PF05266 DUF724: Protein of un 48.0 1.5E+02 0.0033 24.2 9.5 44 106-149 127-177 (190)
364 PF09738 DUF2051: Double stran 47.9 61 0.0013 28.5 6.2 33 122-154 145-177 (302)
365 PF04859 DUF641: Plant protein 47.4 75 0.0016 24.7 6.0 40 112-151 82-121 (131)
366 KOG4378 Nuclear protein COP1 [ 47.4 20 0.00044 34.1 3.3 23 124-146 650-672 (673)
367 COG2900 SlyX Uncharacterized p 47.4 68 0.0015 22.6 5.2 38 115-152 20-57 (72)
368 PRK10698 phage shock protein P 47.3 1.1E+02 0.0024 25.3 7.5 9 129-137 125-133 (222)
369 KOG3501 Molecular chaperone Pr 47.2 1.2E+02 0.0025 23.1 6.7 28 122-149 72-99 (114)
370 TIGR02680 conserved hypothetic 47.2 90 0.0019 32.7 8.2 46 106-151 738-783 (1353)
371 PF10234 Cluap1: Clusterin-ass 47.1 82 0.0018 27.3 6.8 45 110-154 176-220 (267)
372 PF06698 DUF1192: Protein of u 47.0 42 0.00091 22.6 4.0 23 127-149 24-46 (59)
373 TIGR02977 phageshock_pspA phag 46.7 1.1E+02 0.0023 25.2 7.2 31 113-143 102-132 (219)
374 PF08946 Osmo_CC: Osmosensory 46.6 52 0.0011 21.2 4.1 26 110-135 12-37 (46)
375 PF09340 NuA4: Histone acetylt 46.6 51 0.0011 23.3 4.6 30 110-139 2-31 (80)
376 KOG0982 Centrosomal protein Nu 46.5 1.9E+02 0.0041 27.1 9.3 28 109-136 296-323 (502)
377 PF08702 Fib_alpha: Fibrinogen 46.0 1.4E+02 0.0031 23.3 8.3 47 112-158 92-138 (146)
378 PRK14160 heat shock protein Gr 45.8 74 0.0016 26.6 6.2 17 113-129 78-94 (211)
379 PF07407 Seadorna_VP6: Seadorn 45.8 40 0.00087 30.5 4.8 15 108-122 44-58 (420)
380 PF11690 DUF3287: Protein of u 45.8 1.1E+02 0.0024 23.1 6.5 37 109-145 41-79 (109)
381 PF15397 DUF4618: Domain of un 45.7 1.2E+02 0.0026 26.2 7.6 21 99-119 189-209 (258)
382 PF02996 Prefoldin: Prefoldin 45.7 65 0.0014 23.3 5.3 33 112-144 86-118 (120)
383 PF13874 Nup54: Nucleoporin co 45.7 1.3E+02 0.0028 23.1 7.1 22 136-157 105-126 (141)
384 PF13805 Pil1: Eisosome compon 45.6 78 0.0017 27.5 6.4 24 127-150 168-191 (271)
385 PF04599 Pox_G5: Poxvirus G5 p 45.5 96 0.0021 28.7 7.3 50 98-147 87-136 (425)
386 PRK06835 DNA replication prote 45.4 1.9E+02 0.0041 25.4 9.0 21 130-150 64-84 (329)
387 PF07798 DUF1640: Protein of u 45.4 1E+02 0.0022 24.4 6.7 21 127-147 76-96 (177)
388 KOG4807 F-actin binding protei 45.1 82 0.0018 29.3 6.7 13 148-160 484-496 (593)
389 PF09969 DUF2203: Uncharacteri 45.0 1.1E+02 0.0025 23.1 6.6 52 107-158 24-77 (120)
390 PF05010 TACC: Transforming ac 45.0 1.5E+02 0.0033 24.7 7.8 38 112-149 163-200 (207)
391 PF02344 Myc-LZ: Myc leucine z 44.8 67 0.0015 19.2 4.5 21 130-150 7-27 (32)
392 PRK14157 heat shock protein Gr 44.8 68 0.0015 27.2 5.8 16 115-130 96-111 (227)
393 TIGR01242 26Sp45 26S proteasom 44.7 74 0.0016 27.7 6.3 36 110-145 6-41 (364)
394 PF05929 Phage_GPO: Phage caps 44.4 1.7E+02 0.0037 25.5 8.3 29 124-152 228-256 (276)
395 KOG0946 ER-Golgi vesicle-tethe 44.3 2.1E+02 0.0045 29.0 9.7 48 105-152 666-713 (970)
396 PF09766 FimP: Fms-interacting 44.3 1.1E+02 0.0024 27.2 7.4 48 105-152 103-150 (355)
397 PRK14144 heat shock protein Gr 44.2 90 0.0019 25.9 6.4 19 112-130 61-79 (199)
398 cd04776 HTH_GnyR Helix-Turn-He 44.2 1.3E+02 0.0028 22.3 7.2 28 113-140 83-110 (118)
399 PF09311 Rab5-bind: Rabaptin-l 44.2 15 0.00032 29.5 1.7 41 112-152 10-50 (181)
400 KOG0249 LAR-interacting protei 44.0 1.1E+02 0.0024 30.5 7.7 34 118-151 224-257 (916)
401 PF12128 DUF3584: Protein of u 44.0 2.9E+02 0.0063 28.5 11.2 57 99-155 479-535 (1201)
402 PF04012 PspA_IM30: PspA/IM30 44.0 1.7E+02 0.0037 23.6 8.3 52 100-151 85-139 (221)
403 KOG2264 Exostosin EXT1L [Signa 44.0 92 0.002 30.4 7.1 30 110-139 93-122 (907)
404 PHA02109 hypothetical protein 43.9 74 0.0016 26.4 5.7 32 108-139 191-222 (233)
405 PF05600 DUF773: Protein of un 43.8 2.6E+02 0.0057 26.2 10.1 38 112-149 455-492 (507)
406 PF04340 DUF484: Protein of un 43.8 98 0.0021 25.3 6.6 23 114-136 44-66 (225)
407 KOG4593 Mitotic checkpoint pro 43.8 1.2E+02 0.0026 29.9 7.8 49 101-149 550-625 (716)
408 COG3599 DivIVA Cell division i 43.6 72 0.0016 26.6 5.8 36 110-145 30-65 (212)
409 PF08647 BRE1: BRE1 E3 ubiquit 43.4 1.2E+02 0.0027 21.8 9.5 60 91-150 5-71 (96)
410 PF13863 DUF4200: Domain of un 43.3 1.3E+02 0.0028 22.0 9.3 35 108-142 72-106 (126)
411 PF06810 Phage_GP20: Phage min 43.3 95 0.0021 24.4 6.2 18 110-127 51-68 (155)
412 KOG3819 Uncharacterized conser 43.1 1.8E+02 0.0039 27.4 8.7 43 118-160 140-182 (513)
413 PF07047 OPA3: Optic atrophy 3 43.0 58 0.0012 24.9 4.8 22 109-130 111-132 (134)
414 TIGR01834 PHA_synth_III_E poly 43.0 87 0.0019 27.9 6.5 19 121-139 293-311 (320)
415 KOG3335 Predicted coiled-coil 42.9 83 0.0018 25.9 5.8 30 110-139 113-142 (181)
416 PF10168 Nup88: Nuclear pore c 42.6 3E+02 0.0065 27.0 10.6 45 106-150 575-619 (717)
417 KOG4001 Axonemal dynein light 42.4 2E+02 0.0043 24.5 8.1 23 130-152 234-256 (259)
418 PF07767 Nop53: Nop53 (60S rib 42.2 1.5E+02 0.0032 26.4 7.9 17 94-110 281-297 (387)
419 PF05483 SCP-1: Synaptonemal c 42.1 2E+02 0.0044 28.5 9.1 43 106-148 583-625 (786)
420 PF14988 DUF4515: Domain of un 42.0 2E+02 0.0043 23.7 10.0 40 111-150 150-189 (206)
421 PF02403 Seryl_tRNA_N: Seryl-t 41.8 1.3E+02 0.0028 21.5 8.7 33 111-143 68-100 (108)
422 PF00261 Tropomyosin: Tropomyo 41.8 2E+02 0.0044 23.8 10.1 37 111-147 177-213 (237)
423 PF07200 Mod_r: Modifier of ru 41.4 92 0.002 23.7 5.7 9 95-103 41-49 (150)
424 PF12777 MT: Microtubule-bindi 41.2 1.5E+02 0.0031 26.1 7.6 43 107-149 232-274 (344)
425 PF08781 DP: Transcription fac 41.2 1.5E+02 0.0031 23.4 6.8 16 106-121 18-33 (142)
426 PF08537 NBP1: Fungal Nap bind 41.0 1.1E+02 0.0024 27.3 6.8 39 112-150 184-222 (323)
427 TIGR02231 conserved hypothetic 41.0 1E+02 0.0022 28.5 6.9 35 118-152 139-173 (525)
428 PF00261 Tropomyosin: Tropomyo 40.9 1.3E+02 0.0029 24.9 7.0 7 123-129 203-209 (237)
429 PRK14153 heat shock protein Gr 40.9 74 0.0016 26.2 5.4 27 108-134 45-71 (194)
430 PF09789 DUF2353: Uncharacteri 40.8 1.8E+02 0.004 25.9 8.1 24 129-152 77-100 (319)
431 PF05384 DegS: Sensor protein 40.7 1.4E+02 0.0031 23.8 6.9 43 110-152 27-69 (159)
432 COG1196 Smc Chromosome segrega 40.6 2.7E+02 0.0058 28.6 10.3 20 88-107 199-218 (1163)
433 TIGR00293 prefoldin, archaeal 40.4 1E+02 0.0023 22.6 5.8 37 114-150 3-39 (126)
434 PRK11239 hypothetical protein; 40.4 59 0.0013 27.4 4.7 22 129-150 188-209 (215)
435 PF04799 Fzo_mitofusin: fzo-li 40.1 1.4E+02 0.0031 24.2 6.8 42 110-151 120-164 (171)
436 PHA03065 Hypothetical protein; 40.1 99 0.0022 28.7 6.5 55 95-149 86-152 (438)
437 KOG0161 Myosin class II heavy 40.1 2.6E+02 0.0056 30.9 10.3 36 112-147 945-980 (1930)
438 PF05700 BCAS2: Breast carcino 40.1 2.1E+02 0.0046 23.5 9.6 37 115-151 173-209 (221)
439 PF10481 CENP-F_N: Cenp-F N-te 40.0 2.7E+02 0.0058 24.7 8.9 49 104-152 82-130 (307)
440 COG5509 Uncharacterized small 40.0 61 0.0013 22.2 3.9 19 129-147 30-48 (65)
441 TIGR02977 phageshock_pspA phag 39.8 2.1E+02 0.0045 23.4 8.3 37 111-147 107-143 (219)
442 PF06632 XRCC4: DNA double-str 39.6 1.4E+02 0.003 26.7 7.2 7 115-121 156-162 (342)
443 PF11853 DUF3373: Protein of u 39.6 31 0.00068 32.4 3.3 22 111-132 32-53 (489)
444 PF10212 TTKRSYEDQ: Predicted 39.4 1.8E+02 0.0039 27.7 8.2 53 99-151 298-354 (518)
445 PF12017 Tnp_P_element: Transp 39.2 66 0.0014 27.2 5.0 20 114-133 22-41 (236)
446 KOG0980 Actin-binding protein 39.2 4.4E+02 0.0096 27.0 12.5 111 35-150 287-398 (980)
447 PF12711 Kinesin-relat_1: Kine 39.2 28 0.0006 25.3 2.3 27 124-150 51-82 (86)
448 KOG0728 26S proteasome regulat 39.0 1.6E+02 0.0036 26.2 7.4 49 104-152 18-66 (404)
449 cd00584 Prefoldin_alpha Prefol 38.9 1.1E+02 0.0025 22.5 5.8 37 114-150 3-39 (129)
450 PF05278 PEARLI-4: Arabidopsis 38.9 2.6E+02 0.0057 24.3 10.6 10 35-44 73-82 (269)
451 PF11471 Sugarporin_N: Maltopo 38.8 79 0.0017 21.2 4.4 24 111-134 33-56 (60)
452 PF02388 FemAB: FemAB family; 38.8 2E+02 0.0043 25.8 8.2 43 110-152 242-294 (406)
453 PF06305 DUF1049: Protein of u 38.8 49 0.0011 21.6 3.4 16 113-128 51-66 (68)
454 PF03961 DUF342: Protein of un 38.7 3E+02 0.0065 24.9 9.9 33 118-150 376-408 (451)
455 KOG0995 Centromere-associated 38.7 3.1E+02 0.0068 26.4 9.7 19 113-131 304-322 (581)
456 PRK10722 hypothetical protein; 38.5 1.4E+02 0.0029 25.8 6.7 53 103-155 151-207 (247)
457 COG5019 CDC3 Septin family pro 38.4 3E+02 0.0066 25.1 9.2 58 95-152 313-370 (373)
458 PRK02224 chromosome segregatio 38.4 1.8E+02 0.0039 28.4 8.4 60 95-154 577-636 (880)
459 COG5570 Uncharacterized small 38.2 83 0.0018 21.0 4.2 42 111-152 6-54 (57)
460 PF05308 Mito_fiss_reg: Mitoch 38.1 52 0.0011 28.2 4.2 12 36-47 55-66 (253)
461 PF11598 COMP: Cartilage oligo 38.0 1.1E+02 0.0023 19.6 6.1 36 114-149 5-40 (45)
462 PF09325 Vps5: Vps5 C terminal 38.0 1.9E+02 0.0042 23.1 7.4 47 106-152 27-73 (236)
463 PF10205 KLRAQ: Predicted coil 38.0 1.7E+02 0.0037 21.9 7.9 35 116-150 39-73 (102)
464 PF02646 RmuC: RmuC family; I 37.8 1.2E+02 0.0026 26.2 6.5 9 129-137 36-44 (304)
465 PF05667 DUF812: Protein of un 37.6 1.4E+02 0.0031 28.6 7.4 26 112-137 351-376 (594)
466 TIGR02976 phageshock_pspB phag 37.6 79 0.0017 22.2 4.4 25 114-138 39-63 (75)
467 PF15397 DUF4618: Domain of un 37.6 2.7E+02 0.0059 24.1 9.4 33 104-136 75-107 (258)
468 PF14193 DUF4315: Domain of un 37.5 1.5E+02 0.0033 21.2 6.0 46 106-151 11-61 (83)
469 KOG2072 Translation initiation 37.4 3.6E+02 0.0078 27.5 10.1 22 129-150 668-689 (988)
470 PF08941 USP8_interact: USP8 i 37.3 11 0.00024 30.8 0.0 42 111-152 5-46 (179)
471 PRK05771 V-type ATP synthase s 37.1 98 0.0021 29.4 6.3 36 116-151 92-127 (646)
472 PF15070 GOLGA2L5: Putative go 37.0 1.3E+02 0.0028 29.1 7.0 43 109-151 28-70 (617)
473 PF13094 CENP-Q: CENP-Q, a CEN 37.0 1.7E+02 0.0038 22.5 6.8 16 127-142 65-80 (160)
474 PF11853 DUF3373: Protein of u 36.9 31 0.00068 32.3 2.9 14 118-131 32-45 (489)
475 PF09728 Taxilin: Myosin-like 36.9 2.9E+02 0.0062 24.2 9.1 62 85-146 247-308 (309)
476 PF02994 Transposase_22: L1 tr 36.9 1E+02 0.0023 27.5 6.1 48 109-156 150-197 (370)
477 PF13747 DUF4164: Domain of un 36.9 1.6E+02 0.0034 21.1 9.2 62 89-150 11-72 (89)
478 PRK05431 seryl-tRNA synthetase 36.6 3.3E+02 0.0071 24.8 9.8 69 88-156 34-105 (425)
479 PRK05771 V-type ATP synthase s 36.5 85 0.0018 29.9 5.8 36 109-144 92-127 (646)
480 PF11461 RILP: Rab interacting 36.3 1.1E+02 0.0023 20.8 4.7 30 118-147 4-33 (60)
481 COG0576 GrpE Molecular chapero 36.3 1.3E+02 0.0028 24.6 6.1 38 112-149 38-75 (193)
482 PF13971 Mei4: Meiosis-specifi 35.9 89 0.0019 28.4 5.5 37 108-147 39-75 (375)
483 PF14661 HAUS6_N: HAUS augmin- 35.9 2.2E+02 0.0048 23.8 7.6 46 102-147 160-208 (247)
484 PRK02224 chromosome segregatio 35.8 3.9E+02 0.0084 26.1 10.3 65 86-150 616-686 (880)
485 COG1729 Uncharacterized protei 35.6 1.6E+02 0.0034 25.5 6.8 57 109-166 62-118 (262)
486 TIGR02680 conserved hypothetic 35.5 3.1E+02 0.0067 28.9 10.0 63 88-150 275-345 (1353)
487 COG4238 Murein lipoprotein [Ce 35.5 1.6E+02 0.0036 20.9 5.9 38 112-149 34-71 (78)
488 COG3524 KpsE Capsule polysacch 35.5 3.4E+02 0.0073 24.5 9.4 77 84-160 185-280 (372)
489 KOG1103 Predicted coiled-coil 35.5 1.2E+02 0.0027 27.8 6.3 58 99-156 227-284 (561)
490 TIGR03545 conserved hypothetic 35.4 2.5E+02 0.0054 26.7 8.6 66 86-151 167-239 (555)
491 COG4985 ABC-type phosphate tra 35.3 2.4E+02 0.0052 24.5 7.7 65 85-149 181-246 (289)
492 PF11068 YlqD: YlqD protein; 35.3 2.1E+02 0.0045 22.1 7.6 44 106-149 16-67 (131)
493 PF03962 Mnd1: Mnd1 family; I 35.3 2.4E+02 0.0052 22.8 9.9 63 89-151 62-130 (188)
494 cd07624 BAR_SNX7_30 The Bin/Am 35.2 1.6E+02 0.0036 23.7 6.6 42 109-150 20-61 (200)
495 PF01025 GrpE: GrpE; InterPro 35.2 34 0.00073 26.4 2.4 41 109-149 10-50 (165)
496 PRK00106 hypothetical protein; 35.0 4E+02 0.0088 25.3 10.6 65 86-150 86-151 (535)
497 KOG1318 Helix loop helix trans 34.8 3.7E+02 0.008 24.8 10.9 85 75-159 215-332 (411)
498 PF14584 DUF4446: Protein of u 34.8 2.3E+02 0.0049 22.3 8.4 51 99-149 20-78 (151)
499 PRK14146 heat shock protein Gr 34.8 1.4E+02 0.003 25.0 6.2 38 112-149 56-93 (215)
500 PF14335 DUF4391: Domain of un 34.8 1.3E+02 0.0028 24.7 6.0 51 97-147 155-221 (221)
No 1
>smart00338 BRLZ basic region leucin zipper.
Probab=99.64 E-value=2.1e-15 Score=102.76 Aligned_cols=63 Identities=40% Similarity=0.588 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 86 KENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 86 ~e~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
+++++.+|+++||+||++||+||+.|+.+||.++..|+.+|..|..+|..|..|+..|++++.
T Consensus 2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 457889999999999999999999999999999999999999999999999999999999874
No 2
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.56 E-value=3.5e-14 Score=96.53 Aligned_cols=62 Identities=45% Similarity=0.651 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 86 KENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHIL 147 (168)
Q Consensus 86 ~e~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L 147 (168)
++.++.+|+++||+||++||.||+.|+.+||.+|..|+.+|..|+.++..|..++..|+..+
T Consensus 2 ~~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 2 KEDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45678899999999999999999999999999999999999999999999999999998765
No 3
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.36 E-value=6.9e-12 Score=82.82 Aligned_cols=52 Identities=42% Similarity=0.642 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 87 ENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNE 139 (168)
Q Consensus 87 e~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~E 139 (168)
+.++.+|. +||+||++||+||++++.+|+.++..|+.+|..|..+|..|+.|
T Consensus 3 ~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 3 EEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45666666 99999999999999999999999999999999999999999875
No 4
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=99.33 E-value=1e-11 Score=104.37 Aligned_cols=78 Identities=38% Similarity=0.457 Sum_probs=65.7
Q ss_pred CCCCCCCC-CCCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 030957 74 EGQRKRGR-SPADKENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSE-------LDERLSTLQNENQMLRH 145 (168)
Q Consensus 74 ~~~rkr~r-~~~e~e~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~-------L~~~v~~L~~En~~Lr~ 145 (168)
+++|||.| ++...|+|-.||+++||+||+.+|+|||+++.+||.++.+|+.+|.. |+++...|..+|.+|+.
T Consensus 53 ~~~rKr~RL~HLS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~ 132 (292)
T KOG4005|consen 53 QPKRKRRRLDHLSWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDS 132 (292)
T ss_pred chHHHHHhhcccCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 56677766 89999999999999999999999999999999999999998877665 55666667778888888
Q ss_pred HHHHhc
Q 030957 146 ILKNTT 151 (168)
Q Consensus 146 ~L~~~~ 151 (168)
.|..+.
T Consensus 133 ~le~~~ 138 (292)
T KOG4005|consen 133 ELELLR 138 (292)
T ss_pred HHHHHH
Confidence 887443
No 5
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=99.31 E-value=3.5e-12 Score=109.62 Aligned_cols=54 Identities=43% Similarity=0.605 Sum_probs=48.0
Q ss_pred CcHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 84 ADKENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQ 137 (168)
Q Consensus 84 ~e~e~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~ 137 (168)
+|.-.||.-|+++||+||+.||+|||+||+|||.+|..||+.|..|-++|..|.
T Consensus 286 ee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLK 339 (348)
T KOG3584|consen 286 EEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLK 339 (348)
T ss_pred hhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHH
Confidence 445678888999999999999999999999999999999999999877776664
No 6
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=99.27 E-value=5e-12 Score=114.10 Aligned_cols=73 Identities=33% Similarity=0.487 Sum_probs=67.4
Q ss_pred CcHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Q 030957 84 ADKENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTASRRG 156 (168)
Q Consensus 84 ~e~e~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~~~ 156 (168)
+|..-||+||++||+++||.+|.|||+||+.||.+|.....+|.+|+.+|+.|+.+|..|-++|+.+....-.
T Consensus 246 EEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~v~q 318 (472)
T KOG0709|consen 246 EERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTLVIQ 318 (472)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHHHhh
Confidence 3557889999999999999999999999999999999999999999999999999999999999998864433
No 7
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=99.26 E-value=9e-11 Score=100.85 Aligned_cols=65 Identities=25% Similarity=0.395 Sum_probs=59.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 030957 89 KRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTAS 153 (168)
Q Consensus 89 kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~ 153 (168)
+..|+.++|++||.|+|+||++..+.|+.++..|+.+|.+|+.++..|++|+++||+.|.++...
T Consensus 227 ~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~~~ 291 (294)
T KOG4571|consen 227 KLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVYKK 291 (294)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445789999999999999999999999999999999999999999999999999999887654
No 8
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.03 E-value=1.1e-09 Score=100.49 Aligned_cols=62 Identities=37% Similarity=0.521 Sum_probs=53.6
Q ss_pred CcHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 84 ADKENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 84 ~e~e~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
+.+.-|+..||+|||++|..+|.|||+|+..||.+++.|.+||.. |+.||..||++|..+-.
T Consensus 276 d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~-------Lk~ENatLk~qL~~l~~ 337 (655)
T KOG4343|consen 276 DIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQ-------LKKENATLKRQLDELVS 337 (655)
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhhHHHHHHHHHHhh
Confidence 345678888999999999999999999999999999999999988 56677778888877654
No 9
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=98.91 E-value=3.2e-08 Score=84.54 Aligned_cols=70 Identities=24% Similarity=0.402 Sum_probs=65.2
Q ss_pred CCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 83 PADKENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 83 ~~e~e~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
.+.++++++.|+.||.+|++++|.++|....++..++..|++||..|+.+|.+|+.|+..|++.+..+..
T Consensus 188 ~~~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~~~ 257 (269)
T KOG3119|consen 188 VEKKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQLPK 257 (269)
T ss_pred hhcCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3446889999999999999999999999999999999999999999999999999999999999987654
No 10
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=98.62 E-value=2.1e-07 Score=79.28 Aligned_cols=67 Identities=33% Similarity=0.461 Sum_probs=59.6
Q ss_pred HHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 86 KENKRLKR-LLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 86 ~e~kr~rR-~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
.+..+++| .+|||+||.+||.||-++|..||.+|..|..+|..|-..+..|.....+|++.+.+.-.
T Consensus 202 qe~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~~hi~ 269 (279)
T KOG0837|consen 202 QEKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKVMEHIH 269 (279)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555 78999999999999999999999999999999999999999999999999999877644
No 11
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=98.49 E-value=1.2e-09 Score=79.35 Aligned_cols=64 Identities=34% Similarity=0.484 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 87 ENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 87 e~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
+.|.++|..+||.||+.||.||..++.+|+.++..|..+...|..++..|..+...|++.+..+
T Consensus 28 ~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~lk~~~~~L 91 (92)
T PF03131_consen 28 ELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERDELKRKLEQL 91 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5688899999999999999999999999999999988888888777777777766666655544
No 12
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=98.00 E-value=9.8e-06 Score=75.97 Aligned_cols=63 Identities=24% Similarity=0.382 Sum_probs=58.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 89 KRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 89 kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
+=+||+=+||+||+.||.||-.-|..||.+|..|.++-.+|..+-..+.++...++++|..|.
T Consensus 490 rDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~kqqls~L~ 552 (604)
T KOG3863|consen 490 RDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELDSTLGVMKQQLSELY 552 (604)
T ss_pred hccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677899999999999999999999999999999999999999999999999999998775
No 13
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=97.88 E-value=0.00023 Score=55.17 Aligned_cols=77 Identities=27% Similarity=0.307 Sum_probs=67.5
Q ss_pred CCCCCCcH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 030957 79 RGRSPADK-ENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTASRR 155 (168)
Q Consensus 79 r~r~~~e~-e~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~~ 155 (168)
||-+.++- -.|..||-++||=-|+-||-|+-..-.+||.+-..|..+...|++++..+..|...|+..+..+.....
T Consensus 42 rG~~reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~~ 119 (135)
T KOG4196|consen 42 RGLSREEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNSAV 119 (135)
T ss_pred cCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44444333 466677889999999999999999999999999999999999999999999999999999999988765
No 14
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=97.76 E-value=2e-06 Score=76.98 Aligned_cols=81 Identities=33% Similarity=0.383 Sum_probs=73.3
Q ss_pred CCCCCCcHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 030957 79 RGRSPADKENKRLKRLLRNRVSAQQ---ARERKKAYLNELETRVKDLE-RKNSELDERLSTLQNENQMLRHILKNTTASR 154 (168)
Q Consensus 79 r~r~~~e~e~kr~rR~~rNR~AA~~---sR~RKk~~~~~LE~~v~~Le-~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~ 154 (168)
......+.+.++..|+++|++||.+ ||.+++.+...|+.+|+.|+ .+|..|..+|..|.+|+.+|...|.......
T Consensus 144 ~~~~~~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqne~~~l~~~l~~h~~~~ 223 (395)
T KOG1414|consen 144 PSVLTPEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQNEADHLEKELNTHRPPC 223 (395)
T ss_pred CCCCCCcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccccHHHHHHHHHhccCCCc
Confidence 4445667788888999999999999 99999999999999999999 9999999999999999999999999988877
Q ss_pred CCCCC
Q 030957 155 RGGSG 159 (168)
Q Consensus 155 ~~~~~ 159 (168)
.+.+.
T Consensus 224 ~~~~~ 228 (395)
T KOG1414|consen 224 SGNGD 228 (395)
T ss_pred ccCCc
Confidence 76653
No 15
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=96.71 E-value=0.00063 Score=61.09 Aligned_cols=64 Identities=30% Similarity=0.487 Sum_probs=52.9
Q ss_pred CCCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 030957 82 SPADKENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELD-ERLSTLQNENQMLRH 145 (168)
Q Consensus 82 ~~~e~e~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~-~~v~~L~~En~~Lr~ 145 (168)
...+.++++.+-+++||+||-+||+|||.++..|+.+...+..+|..|. .+++.|..++..+..
T Consensus 278 ~~~~p~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~~~~~~~l~~~~~~~~~ 342 (395)
T KOG1414|consen 278 VDEDPDERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLLLNEVELLRNEVKQLSQ 342 (395)
T ss_pred cCCCchhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccccchhhHHHhHHhhhcc
Confidence 4555566666779999999999999999999999999999999999998 666666666665543
No 16
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=95.08 E-value=0.14 Score=35.24 Aligned_cols=49 Identities=20% Similarity=0.201 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Q 030957 109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTASRRGG 157 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~~~~ 157 (168)
.++|.+||.++..++.-..+|...|.....++..|+.+|..+...++.-
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3578999999999999888888888777777777777777777665554
No 17
>PRK00736 hypothetical protein; Provisional
Probab=95.02 E-value=0.11 Score=35.77 Aligned_cols=41 Identities=29% Similarity=0.383 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
++|.+||.++.+++.-...|...|...+.++..|..+|..+
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L 45 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45889999998888877777655555554444444444444
No 18
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=94.94 E-value=0.17 Score=43.04 Aligned_cols=51 Identities=20% Similarity=0.288 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 030957 105 RERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTASRR 155 (168)
Q Consensus 105 R~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~~ 155 (168)
|+|=+..+.+||.++..+..++..|+.+|+.|+..|..|=..++-+.--..
T Consensus 88 RDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~~ 138 (248)
T PF08172_consen 88 RDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSYNN 138 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcc
Confidence 355556669999999999999999999999999999999999998876543
No 19
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=94.77 E-value=0.089 Score=36.84 Aligned_cols=42 Identities=26% Similarity=0.336 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
+.|.-|+.++..|..+|..|......|..||..|++.-....
T Consensus 18 eti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~ 59 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQ 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677777777777777777777777777776554443
No 20
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=94.74 E-value=0.18 Score=34.78 Aligned_cols=42 Identities=19% Similarity=0.173 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
..|+.|=..+..|..+|..|+.++..+..|...|.+.+....
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar 48 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQAR 48 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778888888999999999999999999999988775543
No 21
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.73 E-value=0.12 Score=32.99 Aligned_cols=41 Identities=22% Similarity=0.318 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 030957 114 ELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTASR 154 (168)
Q Consensus 114 ~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~ 154 (168)
+||..+..|......|+...+.|..||..|+.+|..+....
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 57788888888888888888888888888888888776543
No 22
>PRK00295 hypothetical protein; Provisional
Probab=94.72 E-value=0.15 Score=35.11 Aligned_cols=43 Identities=19% Similarity=0.140 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
+.|.+||.++..++.-...|...|...+.++..|+.+|..+..
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~ 47 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIK 47 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999998888887766666666555555555555543
No 23
>PRK04325 hypothetical protein; Provisional
Probab=94.72 E-value=0.16 Score=35.60 Aligned_cols=42 Identities=19% Similarity=0.169 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
++|.+||.++.+++.-...|...|...+.++..|..+|..+.
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~ 50 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLY 50 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 448999999999888888876666665555555555555553
No 24
>PRK04406 hypothetical protein; Provisional
Probab=94.65 E-value=0.18 Score=35.49 Aligned_cols=44 Identities=23% Similarity=0.238 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTAS 153 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~ 153 (168)
++|.+||.++..++.-...|...|...+.++..|+.+|..+...
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~r 54 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGK 54 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888888888887766666666666666666555443
No 25
>PRK02119 hypothetical protein; Provisional
Probab=94.65 E-value=0.18 Score=35.25 Aligned_cols=45 Identities=20% Similarity=0.163 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 030957 109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTAS 153 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~ 153 (168)
.++|.+||.++..++.-..+|...|...+.++..|+.+|..+...
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~r 52 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANK 52 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888999999888888887766666666666666666555443
No 26
>PRK02793 phi X174 lysis protein; Provisional
Probab=94.39 E-value=0.23 Score=34.62 Aligned_cols=44 Identities=32% Similarity=0.287 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
.++|.+||.++.+++.-...|...|...+.++..|..+|..+..
T Consensus 7 e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~ 50 (72)
T PRK02793 7 EARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTE 50 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788899999888888877766666655555555555555543
No 27
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=93.63 E-value=0.36 Score=36.21 Aligned_cols=42 Identities=29% Similarity=0.362 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 111 YLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
.+..|-.++..|......|-++...|+-||..||.+|..+..
T Consensus 16 ~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 16 QLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555555555555555666666677788888888888755
No 28
>PRK00846 hypothetical protein; Provisional
Probab=93.20 E-value=0.43 Score=33.95 Aligned_cols=44 Identities=27% Similarity=0.279 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
.++|.+||.++...+.-..+|...|...+.++..|+.+|..+..
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~ 55 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLE 55 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888887777777766665555555555555554443
No 29
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.06 E-value=1.4 Score=36.58 Aligned_cols=43 Identities=14% Similarity=0.244 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
++.+..++..+.+|+.+|.+|+.++..+++++..|+.++..+.
T Consensus 124 ~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 124 QQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566677777888888888888888888888888877665
No 30
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=93.06 E-value=0.5 Score=35.70 Aligned_cols=42 Identities=31% Similarity=0.324 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 111 YLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
.+..|-.++..|.....+|-++...|+-||..||..|..+..
T Consensus 16 ~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 16 NLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345555555666666666666667788888889999988743
No 31
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=92.97 E-value=1.6 Score=36.02 Aligned_cols=52 Identities=21% Similarity=0.328 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCC
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTASRRGGSGGDTN 163 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~~~~~~~~~~ 163 (168)
..-+..+|..+.++..+|....+.|.+||.+||++.--+.....+++.++++
T Consensus 103 a~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKElcl~LDeer~~~~~~~~~ 154 (195)
T PF10226_consen 103 ASVMRQEVAQYQQKLKELEDKQEELIRENLELKELCLYLDEERPGSGRGGAG 154 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccccCCCCCCCC
Confidence 4556778888999999999999999999999999998888877544444333
No 32
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=92.88 E-value=0.31 Score=34.83 Aligned_cols=43 Identities=21% Similarity=0.371 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcc
Q 030957 110 AYLNELETRVKDLERKNSELDERLST-------LQNENQMLRHILKNTTA 152 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~-------L~~En~~Lr~~L~~~~~ 152 (168)
+-|.-|.-++++|..+|..|..++.. |..||..|++.......
T Consensus 18 dtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wqe 67 (79)
T PRK15422 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQE 67 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777777777665 78888888877655443
No 33
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=92.62 E-value=0.37 Score=40.73 Aligned_cols=42 Identities=33% Similarity=0.449 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 030957 108 KKAYLNELETRVKDLERKNSELDERLS---TLQNENQMLRHILKN 149 (168)
Q Consensus 108 Kk~~~~~LE~~v~~Le~eN~~L~~~v~---~L~~En~~Lr~~L~~ 149 (168)
.-..+.+|..+.+.|++||.+|+.++. .|+.||..|+++|.-
T Consensus 67 ~~~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~ 111 (276)
T PRK13922 67 SLASLFDLREENEELKKELLELESRLQELEQLEAENARLRELLNL 111 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334566778888888888888877776 678999999998854
No 34
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=92.54 E-value=0.59 Score=35.04 Aligned_cols=46 Identities=26% Similarity=0.291 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTASRR 155 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~~ 155 (168)
..+..||..+..|-.+...|+.+|..|..||..|+-....+...+.
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~ 53 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLE 53 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888888888888888889999999999988877777765443
No 35
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=92.41 E-value=1.8 Score=33.96 Aligned_cols=65 Identities=23% Similarity=0.317 Sum_probs=56.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 88 NKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 88 ~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
++-+.-.+.|+..+-.-=+-.+..+..|+.++..+..+...|...+..|..|+..|-+.|+....
T Consensus 30 EreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~ 94 (140)
T PF10473_consen 30 ERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQE 94 (140)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677899999888899999999999999999999999999999999999988888876653
No 36
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=92.40 E-value=0.29 Score=33.12 Aligned_cols=31 Identities=35% Similarity=0.502 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 117 TRVKDLERKNSELDERLSTLQNENQMLRHIL 147 (168)
Q Consensus 117 ~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L 147 (168)
.+|+.|.....+|..++..|+.||..||+..
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4677777888888888888999999999864
No 37
>PF15058 Speriolin_N: Speriolin N terminus
Probab=91.93 E-value=0.5 Score=39.14 Aligned_cols=39 Identities=31% Similarity=0.440 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 113 NELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
+-|..+++.|-.||++||.+|. |..||++||..|.+...
T Consensus 8 eGlrhqierLv~ENeeLKKlVr-LirEN~eLksaL~ea~~ 46 (200)
T PF15058_consen 8 EGLRHQIERLVRENEELKKLVR-LIRENHELKSALGEACA 46 (200)
T ss_pred HHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHhhc
Confidence 4566788888999999999886 66799999999877665
No 38
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=91.46 E-value=6.5 Score=34.48 Aligned_cols=47 Identities=15% Similarity=0.370 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHH--HHHHHHHHHHHHHHHhccccC
Q 030957 109 KAYLNELETRVKD-----LERKNSELDERLS--TLQNENQMLRHILKNTTASRR 155 (168)
Q Consensus 109 k~~~~~LE~~v~~-----Le~eN~~L~~~v~--~L~~En~~Lr~~L~~~~~~~~ 155 (168)
.-.|++|..++.. .|.|.+...+|+. +.+.|++.|||.+..+...+.
T Consensus 88 etEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ 141 (305)
T PF15290_consen 88 ETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLA 141 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3345555444332 3555555555543 567888888888887776554
No 39
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=91.30 E-value=2.1 Score=30.58 Aligned_cols=47 Identities=23% Similarity=0.331 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 106 ERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 106 ~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
++=..++..|+.-+..|-......+.+...|..||.+|.+-|.++-.
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445778888888888888888899999999999999999988864
No 40
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=91.27 E-value=0.63 Score=44.42 Aligned_cols=43 Identities=33% Similarity=0.414 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
..+..|+..++.|+.+|..|+..+..|+.++.+|+..|..+..
T Consensus 422 ~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r 464 (652)
T COG2433 422 KRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRR 464 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888888888888888888888888888888877754
No 41
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=91.19 E-value=1.7 Score=34.94 Aligned_cols=49 Identities=31% Similarity=0.457 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 103 QARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 103 ~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
.--++-+..+..|..+++.|+.+|..|..++..++.+..+|-.+|....
T Consensus 104 ~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RAR 152 (161)
T TIGR02894 104 KENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRAR 152 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666778888888888888888888888888888888888887654
No 42
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=91.16 E-value=1.5 Score=30.70 Aligned_cols=29 Identities=31% Similarity=0.436 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 111 YLNELETRVKDLERKNSELDERLSTLQNE 139 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~~E 139 (168)
.+.+|..+...|..+|..|+.+...|+.+
T Consensus 26 e~eeLke~n~~L~~e~~~L~~en~~L~~e 54 (72)
T PF06005_consen 26 ENEELKEKNNELKEENEELKEENEQLKQE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 43
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=90.94 E-value=2.5 Score=30.79 Aligned_cols=51 Identities=33% Similarity=0.459 Sum_probs=33.0
Q ss_pred hHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 97 NRVSAQQ--ARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHIL 147 (168)
Q Consensus 97 NR~AA~~--sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L 147 (168)
.+|+|-+ +-.|=...|.+|+.++..|..+|..|+.++..-..|...|-..|
T Consensus 34 ~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ll 86 (87)
T PF12709_consen 34 TKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQELLKLL 86 (87)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566654 22233445677777777777777777777777777777766554
No 44
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=90.93 E-value=1 Score=33.40 Aligned_cols=43 Identities=12% Similarity=0.179 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 106 ERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 106 ~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
...++++.+++.++..|+.+|..|+.+|..|+..-.++.++..
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR 72 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERAR 72 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHH
Confidence 4456677888888888888888888888888875455555544
No 45
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=90.87 E-value=1.1 Score=29.98 Aligned_cols=37 Identities=14% Similarity=0.284 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
+++||.++..++.....++.+++.|..++..|.+-++
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk 38 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVK 38 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666555555555555555544444444444443
No 46
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=90.69 E-value=0.77 Score=39.58 Aligned_cols=38 Identities=29% Similarity=0.422 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDERLS----TLQNENQMLRHILKN 149 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~----~L~~En~~Lr~~L~~ 149 (168)
+.+|..+.+.|..++.+|+.++. .|+.||..||++|.-
T Consensus 68 ~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~ 109 (283)
T TIGR00219 68 VNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNS 109 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34556666667776665544333 388999999998854
No 47
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=90.58 E-value=1.3 Score=33.50 Aligned_cols=45 Identities=24% Similarity=0.268 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 030957 111 YLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTASRR 155 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~~ 155 (168)
.+..||..+..|-.+...|+..|..|..||..|+-.-..+...+.
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLE 53 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777777777777777777766555554443
No 48
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=90.31 E-value=0.28 Score=46.22 Aligned_cols=43 Identities=28% Similarity=0.359 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 102 QQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLR 144 (168)
Q Consensus 102 ~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr 144 (168)
+.+=.-=+..+..|+.+++.|..||..|+++|..|..||..|+
T Consensus 301 KEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~k 343 (655)
T KOG4343|consen 301 KEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLK 343 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccc
Confidence 3444667888999999999999999999999999999998775
No 49
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=89.94 E-value=2.8 Score=38.99 Aligned_cols=57 Identities=14% Similarity=0.241 Sum_probs=36.3
Q ss_pred HHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 95 LRNRVSAQQAR-ERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 95 ~rNR~AA~~sR-~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
.+.++++++.+ .-=++.|+.|+.+++.|...+..|..+|+.|+.||..|+.+|..+.
T Consensus 67 nqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~ 124 (475)
T PRK13729 67 RQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALG 124 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44444444422 1123334444445555557777899999999999999999996543
No 50
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=89.88 E-value=1.3 Score=29.28 Aligned_cols=44 Identities=34% Similarity=0.406 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 108 KKAYLNELETRVKDLER----KNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 108 Kk~~~~~LE~~v~~Le~----eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
+...|.+|+.++..-.. .+.....+|..|..||..|+.+|....
T Consensus 2 w~~Rl~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 2 WLLRLEELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HHHHHHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666554221 344567788888888888888886554
No 51
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=89.73 E-value=1.1 Score=38.47 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 97 NRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQ 137 (168)
Q Consensus 97 NR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~ 137 (168)
-|..++.--..-+..+..|+.+...|..++.+|+.++..|.
T Consensus 209 SR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~ 249 (269)
T KOG3119|consen 209 SRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLR 249 (269)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444444444444444444
No 52
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=89.36 E-value=2.9 Score=30.97 Aligned_cols=41 Identities=27% Similarity=0.384 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 030957 113 NELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTAS 153 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~ 153 (168)
.+|...++..+.|-.-|++.|..|..+|..|...|..+...
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~ 44 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSK 44 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777888888888888888999999999998888887753
No 53
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=89.31 E-value=5.1 Score=27.20 Aligned_cols=49 Identities=22% Similarity=0.401 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 97 NRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRH 145 (168)
Q Consensus 97 NR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~ 145 (168)
.+.+.+.-=.+=+.-...++.++++.+..|..|..+|..|..+...||.
T Consensus 12 akQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 12 AKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3333333334445555677778888888888888888888887777663
No 54
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=88.85 E-value=7.3 Score=31.98 Aligned_cols=64 Identities=30% Similarity=0.445 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 86 KENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKN 149 (168)
Q Consensus 86 ~e~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~ 149 (168)
.+...+++.+.|-..-..+=..-+..+..++.++..|+.++..|..++..|..|...|...+..
T Consensus 69 ~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~ 132 (201)
T PF13851_consen 69 EEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFES 132 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666777888889999999999999999999999888888766543
No 55
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=88.70 E-value=2.9 Score=31.27 Aligned_cols=53 Identities=21% Similarity=0.232 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 100 SAQQARERKKAYLNEL------------ETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 100 AA~~sR~RKk~~~~~L------------E~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
+.......+++|...- ......++.+|.+|++++..|..|+..|+..+.-+..
T Consensus 42 s~~tl~~W~r~y~~~~~~~~~~~~~~~~~~~~~~~~~ei~~L~~el~~L~~E~diLKKa~~~~~~ 106 (121)
T PRK09413 42 AASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRA 106 (121)
T ss_pred CHHHHHHHHHHHhhcccccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 3344556666665321 1235567888999999999999999999988855543
No 56
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.18 E-value=2.1 Score=27.25 Aligned_cols=36 Identities=22% Similarity=0.316 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 113 NELETRVKDLERKNSELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
+-|-..+..|..+|..|..+.+.|..|+..|+..|.
T Consensus 8 ~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 8 DALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456666777777777777777777777777776653
No 57
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=88.15 E-value=0.81 Score=36.96 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=2.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030957 128 ELDERLSTLQNENQMLRHIL 147 (168)
Q Consensus 128 ~L~~~v~~L~~En~~Lr~~L 147 (168)
.|+.+++.|+.|...||+.|
T Consensus 28 ~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 28 NLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHCH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555554
No 58
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=88.03 E-value=2.7 Score=28.33 Aligned_cols=42 Identities=21% Similarity=0.515 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 107 RKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 107 RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
..+..+..|+.+++.|..+|..|+.++..|...-.++.....
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 455667788888888888888888888777444444444433
No 59
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.87 E-value=1.9 Score=30.44 Aligned_cols=40 Identities=23% Similarity=0.375 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHh
Q 030957 111 YLNELETRVKDLERKNSEL-------DERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L-------~~~v~~L~~En~~Lr~~L~~~ 150 (168)
-|.-|+-++++|..+|..| +...+.|+.||..|++.-..-
T Consensus 19 TI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~W 65 (79)
T COG3074 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGW 65 (79)
T ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666654 445556777777777665443
No 60
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=87.80 E-value=2.5 Score=30.49 Aligned_cols=43 Identities=23% Similarity=0.444 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
..++.|..-+..|++.|..|..++..|...|+..|..+++-..
T Consensus 33 s~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~~ 75 (83)
T PF03670_consen 33 SMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQLS 75 (83)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678899999999999999999999999999999999877655
No 61
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=87.72 E-value=1.9 Score=36.15 Aligned_cols=47 Identities=19% Similarity=0.311 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 106 ERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 106 ~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
+.-...+..|+.+++.|+..|.+|...+..++.++..|.+++.++..
T Consensus 52 ~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~ 98 (251)
T PF11932_consen 52 QELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEE 98 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667777777777888888888888888888888877776654
No 62
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=87.68 E-value=1.5 Score=29.35 Aligned_cols=35 Identities=17% Similarity=0.433 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHI 146 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~ 146 (168)
+..|+..+..++.+|.+|+..|+.|..-.+.|-.+
T Consensus 9 ~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~l 43 (55)
T PF05377_consen 9 LPRIESSINTVKKENEEISESVEKIEENVKDLLSL 43 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666666555544443
No 63
>PRK14127 cell division protein GpsB; Provisional
Probab=87.59 E-value=2.4 Score=32.01 Aligned_cols=42 Identities=12% Similarity=0.249 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
++++++-..++.|..+|..|+.++..|+.++..|..++....
T Consensus 30 ~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~ 71 (109)
T PRK14127 30 KFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVGA 71 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 466667777778888888888888888888888888877554
No 64
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=87.57 E-value=1.8 Score=32.11 Aligned_cols=35 Identities=20% Similarity=0.197 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 111 YLNELETRVKDLERKNSELDERLSTLQNENQMLRH 145 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~ 145 (168)
.+.+|+.++..++.+|..|+.+...|..|+..|+.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34566666777777777766666666666666654
No 65
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=87.56 E-value=6.2 Score=31.50 Aligned_cols=33 Identities=24% Similarity=0.418 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 120 KDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 120 ~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
..++.++..|..+|..|+.+|..|...+.++..
T Consensus 85 d~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~ 117 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLEEENRQLELKLKNLSD 117 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 567788889999999999999999988877654
No 66
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=87.30 E-value=2.3 Score=34.20 Aligned_cols=39 Identities=26% Similarity=0.340 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
...|+.+...|+.++..|+.++..|+.||..|.+.+..+
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~ 137 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTI 137 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666777777777777777777777666544
No 67
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=87.28 E-value=1.8 Score=35.43 Aligned_cols=66 Identities=26% Similarity=0.266 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCC
Q 030957 87 ENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTASRRGGS 158 (168)
Q Consensus 87 e~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~~~~~ 158 (168)
|..|..|.++++ -+..+..+.+|+.++..|+.+..+++..+..|.......+.-|..+....+.++
T Consensus 89 Ey~R~~~~e~~k------ee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~~~l~~~~~el~~~~q~~p~~~ 154 (181)
T KOG3335|consen 89 EYWRQARKERKK------EEKRKQEIMELRLKVEKLENAIAELTKFFSQLHSKLNKPESELKPIRQAPPNPG 154 (181)
T ss_pred hhHHhhhcchhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccCCCCCC
Confidence 344555555555 466777788888888888887777777777776555555555555554444443
No 68
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=87.08 E-value=4.9 Score=30.84 Aligned_cols=48 Identities=23% Similarity=0.324 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 105 RERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 105 R~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
+..|..-+++|+.+++.|+.+...|..+...|+.+...|+..|...-.
T Consensus 65 k~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~ 112 (119)
T COG1382 65 KVSKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALG 112 (119)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 346777788899999988888888888888888888888888876544
No 69
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=87.04 E-value=1.2 Score=32.73 Aligned_cols=34 Identities=29% Similarity=0.449 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 106 ERKKAYLNELETRVKDLERKNSELDERLSTLQNE 139 (168)
Q Consensus 106 ~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~E 139 (168)
.-|+.+++.|..++..++.+|..|..+|..++.|
T Consensus 76 ~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~e 109 (109)
T PF03980_consen 76 PYKKKEREQLNARLQELEEENEALAEEIQEQRKE 109 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3467888999999999999999999888877653
No 70
>PRK00736 hypothetical protein; Provisional
Probab=86.84 E-value=6.2 Score=27.07 Aligned_cols=44 Identities=11% Similarity=0.158 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
...+..+|.-++.|-....+.+.+|..|..++..|..+|..+..
T Consensus 11 E~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~~ 54 (68)
T PRK00736 11 EIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLEE 54 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34567788889999999999999999999999999999988754
No 71
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=86.74 E-value=7.9 Score=32.06 Aligned_cols=64 Identities=23% Similarity=0.269 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 86 KENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 86 ~e~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
.-.+|+|+.+..++++---+-+ .|.++..+++..-.|+..|+.....|+.+|++||...-.+..
T Consensus 20 el~~rLR~~E~ek~~~m~~~g~---lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDd 83 (195)
T PF10226_consen 20 ELVRRLRRAEAEKMSLMVEHGR---LMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDD 83 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 3467888888888777655543 456666777777788888888888899999999988755543
No 72
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=86.66 E-value=1.6 Score=38.04 Aligned_cols=45 Identities=18% Similarity=0.265 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTASR 154 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~ 154 (168)
+|+-.||-+.+....+...|+.+|..|+..|..||++|..+...+
T Consensus 64 ~~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~ 108 (389)
T PF06216_consen 64 DYIYNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREII 108 (389)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788888888888889999999999999999999988876544
No 73
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=86.57 E-value=2.3 Score=29.35 Aligned_cols=27 Identities=33% Similarity=0.330 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 124 RKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 124 ~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
....+|-.....|..||..|++++..+
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~ 33 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQEKTW 33 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444455555555555555444
No 74
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=86.57 E-value=2.7 Score=27.95 Aligned_cols=33 Identities=24% Similarity=0.475 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 108 KKAYLNELETRVKDLERKNSELDERLSTLQNEN 140 (168)
Q Consensus 108 Kk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En 140 (168)
=...+..|+.+...|..++..|..++..|..+|
T Consensus 31 Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 31 LEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334455555555555555555555555555554
No 75
>PRK04325 hypothetical protein; Provisional
Probab=86.51 E-value=6.4 Score=27.45 Aligned_cols=44 Identities=16% Similarity=0.227 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
...+..+|.-+++|-....+.+.+|..|+.++..|..+|..+..
T Consensus 15 E~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~~ 58 (74)
T PRK04325 15 EIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDANP 58 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35677888899999999999999999999999999999988754
No 76
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=86.36 E-value=4.7 Score=27.11 Aligned_cols=29 Identities=24% Similarity=0.368 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 121 DLERKNSELDERLSTLQNENQMLRHILKN 149 (168)
Q Consensus 121 ~Le~eN~~L~~~v~~L~~En~~Lr~~L~~ 149 (168)
..-.+...|..++..|+.+|..|+.+|++
T Consensus 30 ~vL~~R~~l~~e~~~L~~qN~eLr~lLkq 58 (60)
T PF14775_consen 30 KVLLDRAALIQEKESLEQQNEELRSLLKQ 58 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445566778889999999999999975
No 77
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=86.22 E-value=7.4 Score=33.37 Aligned_cols=31 Identities=23% Similarity=0.440 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 117 TRVKDLERKNSELDERLSTLQNENQMLRHIL 147 (168)
Q Consensus 117 ~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L 147 (168)
.+++++.++|.+|..++..|+.|...++..|
T Consensus 142 ekl~E~~~EkeeL~~eleele~e~ee~~erl 172 (290)
T COG4026 142 EKLEELQKEKEELLKELEELEAEYEEVQERL 172 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444443333333333333
No 78
>PRK02793 phi X174 lysis protein; Provisional
Probab=85.97 E-value=7.4 Score=26.99 Aligned_cols=44 Identities=16% Similarity=0.261 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
...+..+|.-+..|-....+.+.+|..|+.++..|.++|..+..
T Consensus 14 E~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 57 (72)
T PRK02793 14 ESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34567788889999999999999999999999999999998764
No 79
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=85.90 E-value=9.6 Score=30.40 Aligned_cols=57 Identities=19% Similarity=0.369 Sum_probs=45.8
Q ss_pred cHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 85 DKENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQ 141 (168)
Q Consensus 85 e~e~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~ 141 (168)
++-.+.++++++.|..|.-|=.+|-....+|..++++.+....++...|..|...+.
T Consensus 80 ~~a~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~elas~m~ 136 (152)
T PF11500_consen 80 EKAEKEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHVTELASQMA 136 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788999999999999999999999999988888777777777776665443
No 80
>PRK04406 hypothetical protein; Provisional
Probab=85.76 E-value=7.5 Score=27.27 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
...+..+|.-+..|.....+.+.+|..|+.++..|.++|..+..
T Consensus 17 E~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~~ 60 (75)
T PRK04406 17 ECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMDS 60 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34567788889999999999999999999999999999988764
No 81
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=85.74 E-value=2.5 Score=33.06 Aligned_cols=33 Identities=30% Similarity=0.535 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 120 KDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 120 ~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
.+||.+|..|+.+|+.|..||..|+..|..+..
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~ 109 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRELDAYKS 109 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999999988877664
No 82
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=85.66 E-value=17 Score=29.25 Aligned_cols=37 Identities=24% Similarity=0.337 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 113 NELETRVKDLERKNSELDERLSTLQNENQMLRHILKN 149 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~ 149 (168)
+.|..++..|.-++..|..++..|+.||..|.+++..
T Consensus 147 e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 147 EILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555666666777777777766543
No 83
>PRK02119 hypothetical protein; Provisional
Probab=85.51 E-value=7.9 Score=26.95 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
...+..+|.-+..|.....+.+.+|+.|+.++..|.++|..+..
T Consensus 15 E~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~~ 58 (73)
T PRK02119 15 EMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQP 58 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34567788889999999999999999999999999999998753
No 84
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=85.43 E-value=0.49 Score=35.19 Aligned_cols=42 Identities=31% Similarity=0.495 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
.||+.|...+..|..+|..|+.++..|..++..|+.....+.
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~ 66 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQ 66 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 578888888888888888888888877776666655444433
No 85
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.39 E-value=5.8 Score=27.91 Aligned_cols=43 Identities=30% Similarity=0.244 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
++|.+||.++..-+.-..+|...|...+..+..++.+|.-+..
T Consensus 8 ~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~ 50 (72)
T COG2900 8 ARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTE 50 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888887777777766666666655555555555443
No 86
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=85.17 E-value=3.1 Score=28.07 Aligned_cols=30 Identities=23% Similarity=0.452 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 121 DLERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 121 ~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
.+..+...|+.+++.|..+|..|+..+..+
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444455555555555555555444
No 87
>PRK00295 hypothetical protein; Provisional
Probab=85.01 E-value=6.4 Score=27.00 Aligned_cols=43 Identities=12% Similarity=0.040 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
...+..+|.-+..|.....+.+.+|..|+.++..|.++|..+.
T Consensus 11 E~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 11 ESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456778888999999999999999999999999999999875
No 88
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=84.86 E-value=4 Score=34.96 Aligned_cols=45 Identities=33% Similarity=0.381 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 106 ERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 106 ~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
.++...++++..+++.|+.+|..|...+..|..|.-.|+..+.++
T Consensus 159 eele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~EL 203 (290)
T COG4026 159 EELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDEL 203 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Confidence 344444444444444444455555555555554555555554444
No 89
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=84.74 E-value=14 Score=30.70 Aligned_cols=19 Identities=26% Similarity=0.517 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030957 115 LETRVKDLERKNSELDERL 133 (168)
Q Consensus 115 LE~~v~~Le~eN~~L~~~v 133 (168)
++.++..|......++.+|
T Consensus 68 ~~~r~~~l~~~i~~~~~~i 86 (302)
T PF10186_consen 68 LRERLERLRERIERLRKRI 86 (302)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 90
>PRK10884 SH3 domain-containing protein; Provisional
Probab=84.52 E-value=10 Score=31.40 Aligned_cols=40 Identities=8% Similarity=0.117 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 108 KKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHIL 147 (168)
Q Consensus 108 Kk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L 147 (168)
....+.+|+.+.+.|..++..++.+++.|+.+|..++..+
T Consensus 130 ~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444566667777777777777777766666666666443
No 91
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=84.48 E-value=3.9 Score=31.05 Aligned_cols=39 Identities=28% Similarity=0.366 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Q 030957 111 YLNELETRVKDLERKNSELDERLSTLQN-------ENQMLRHILKN 149 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~~-------En~~Lr~~L~~ 149 (168)
.+..||..+-.|-.+...|++.+..|.. ||..||.+|..
T Consensus 9 ~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 9 QVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 4566677766666666666666665554 55555666654
No 92
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=83.96 E-value=14 Score=28.45 Aligned_cols=60 Identities=23% Similarity=0.243 Sum_probs=45.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 92 KRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 92 rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
.|.++.|.+=---|.==+.+|..||.+...++.-|..|..+|.-|+..+...|..+..+.
T Consensus 14 ~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~ 73 (134)
T PF08232_consen 14 HRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLK 73 (134)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 345666666666666667778888888888888888888888888888887777776544
No 93
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.80 E-value=15 Score=31.91 Aligned_cols=64 Identities=16% Similarity=0.328 Sum_probs=51.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 88 NKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 88 ~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
+..+.-+..+.--++.--+.-...++++..++..+..++.+++..+..|+.++..|+..|.+-.
T Consensus 37 ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~ 100 (265)
T COG3883 37 DSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQ 100 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777888888888888999999999999999888888888888888877776543
No 94
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=83.68 E-value=5.9 Score=28.35 Aligned_cols=35 Identities=20% Similarity=0.304 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHI 146 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~ 146 (168)
++.||.+|...-..+.-|+-+|+.|..+|..|.+.
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e 40 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQE 40 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555554444444444444444444444443
No 95
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=83.44 E-value=5.6 Score=27.19 Aligned_cols=43 Identities=21% Similarity=0.299 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
..+..++.-++.|.........+|..|+.++..|..+|..+..
T Consensus 11 ~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 53 (69)
T PF04102_consen 11 IKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELED 53 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4566778889999999999999999999999999999999874
No 96
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=83.44 E-value=7.4 Score=28.32 Aligned_cols=35 Identities=29% Similarity=0.432 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 108 KKAYLNELETRVKDLERKNSELDERLSTLQNENQM 142 (168)
Q Consensus 108 Kk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~ 142 (168)
|+-|-...+.+|..|+.+|..|..++..|..++..
T Consensus 40 KksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~ 74 (87)
T PF12709_consen 40 KKSYEARWEKKVDELENENKALKRENEQLKKKLDT 74 (87)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555566666666666666666655554433
No 97
>PRK11637 AmiB activator; Provisional
Probab=83.40 E-value=11 Score=33.80 Aligned_cols=15 Identities=27% Similarity=0.353 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 030957 110 AYLNELETRVKDLER 124 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~ 124 (168)
..+..|+.++..++.
T Consensus 75 ~~l~~l~~qi~~~~~ 89 (428)
T PRK11637 75 AQLKKQEEAISQASR 89 (428)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444443333333
No 98
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=83.23 E-value=12 Score=28.44 Aligned_cols=36 Identities=31% Similarity=0.542 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 115 LETRVKDLERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 115 LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
.+.+-..|+.++..+..++..|..+|.-|-++|..+
T Consensus 96 w~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 96 WEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344455577788888888889999999998888765
No 99
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=83.15 E-value=2.5 Score=28.69 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030957 109 KAYLNELETRVKDLERKNSELDE 131 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~~ 131 (168)
|+.|.+|+.++..|+.||.-|+.
T Consensus 20 K~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 20 KEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666666666666654
No 100
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=82.97 E-value=7.6 Score=28.72 Aligned_cols=43 Identities=23% Similarity=0.231 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
.++...|.+..-|.....+|..+...|..|...++.....+..
T Consensus 8 ~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~ 50 (96)
T PF11365_consen 8 RQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDS 50 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 4677788888888888888888888899999999998877764
No 101
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=82.92 E-value=5.6 Score=31.02 Aligned_cols=31 Identities=26% Similarity=0.484 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 115 LETRVKDLERKNSELDERLSTLQNENQMLRH 145 (168)
Q Consensus 115 LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~ 145 (168)
++.+|..|...|..|..+|+.|......++.
T Consensus 33 ~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~ 63 (143)
T PF12718_consen 33 KEQEITSLQKKNQQLEEELDKLEEQLKEAKE 63 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 102
>PRK11637 AmiB activator; Provisional
Probab=82.56 E-value=13 Score=33.47 Aligned_cols=11 Identities=18% Similarity=0.549 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 030957 129 LDERLSTLQNE 139 (168)
Q Consensus 129 L~~~v~~L~~E 139 (168)
|..+|..++.+
T Consensus 108 l~~eI~~~q~~ 118 (428)
T PRK11637 108 LNASIAKLEQQ 118 (428)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 103
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=82.32 E-value=2.5 Score=32.43 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 127 SELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 127 ~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
.+|.++|..|+.||..|+.+|.....
T Consensus 6 EeLaaeL~kLqmENk~LKkkl~~~~~ 31 (118)
T PF05812_consen 6 EELAAELQKLQMENKALKKKLRQSVG 31 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 46677777788888888888876554
No 104
>PF15556 Zwint: ZW10 interactor
Probab=82.28 E-value=22 Score=30.07 Aligned_cols=53 Identities=15% Similarity=0.230 Sum_probs=23.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 93 RLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRH 145 (168)
Q Consensus 93 R~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~ 145 (168)
-++++|+|..+-.-....++..|.....++......-..+++.|..|...|++
T Consensus 117 a~eK~r~AQkqwqlqQeK~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~~lkq 169 (252)
T PF15556_consen 117 AMEKLRAAQKQWQLQQEKHLQHLAEVSAEVRERQTGTQQELERLYQELGTLKQ 169 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555444444455555544444433333333333344444333333
No 105
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=82.26 E-value=8.6 Score=27.97 Aligned_cols=44 Identities=20% Similarity=0.321 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 108 KKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 108 Kk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
+.+-+..|+.+++.|+.+...|..++..|..+...|+..|.++.
T Consensus 61 ~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 61 KEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55566778888888888888888888888888888888887653
No 106
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=81.40 E-value=19 Score=29.52 Aligned_cols=50 Identities=20% Similarity=0.261 Sum_probs=22.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 94 LLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQML 143 (168)
Q Consensus 94 ~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~L 143 (168)
++.+.++-+..+.....+...|+.++.+-+.++..|...+..|+..+..|
T Consensus 94 RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el 143 (190)
T PF05266_consen 94 RLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILEL 143 (190)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555544333333333333333333333
No 107
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=81.20 E-value=4 Score=29.03 Aligned_cols=28 Identities=21% Similarity=0.414 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 119 VKDLERKNSELDERLSTLQNENQMLRHI 146 (168)
Q Consensus 119 v~~Le~eN~~L~~~v~~L~~En~~Lr~~ 146 (168)
+.+|.++|.+|+.+|..|+.|.+.++..
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3568889999999999998888887766
No 108
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=81.16 E-value=9 Score=27.10 Aligned_cols=42 Identities=26% Similarity=0.444 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
...+..|+.+.+.++.+...|...+..|..+...++..|...
T Consensus 61 ~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~ 102 (106)
T PF01920_consen 61 EEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYEL 102 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777777777777777777776666543
No 109
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=81.16 E-value=6.9 Score=36.47 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 122 LERKNSELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 122 Le~eN~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
|.++..+|+.++..|+..+..|..+|.
T Consensus 114 ~~~~~~ql~~~~~~~~~~l~~l~~~l~ 140 (472)
T TIGR03752 114 LTKEIEQLKSERQQLQGLIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444444443
No 110
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=81.14 E-value=27 Score=28.85 Aligned_cols=41 Identities=29% Similarity=0.330 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
+..||.+-.+|-..|-++...+..|+.|+..|+........
T Consensus 177 L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~ 217 (221)
T PF05700_consen 177 LRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKE 217 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45677777777777888888888888888888877766544
No 111
>PRK09343 prefoldin subunit beta; Provisional
Probab=80.90 E-value=12 Score=28.24 Aligned_cols=40 Identities=20% Similarity=0.266 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
+.+|+.+++.++.+...|..+...|+.....+...|..+-
T Consensus 73 ~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 73 EKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444555555555555555555554443
No 112
>PRK00846 hypothetical protein; Provisional
Probab=80.82 E-value=15 Score=26.02 Aligned_cols=44 Identities=11% Similarity=-0.000 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTAS 153 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~ 153 (168)
..+...|.-++.|.......+..|+.|..++..|..+|+.+...
T Consensus 20 ~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s 63 (77)
T PRK00846 20 TRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRST 63 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34566777888888888899999999999999999999998753
No 113
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=80.74 E-value=10 Score=26.36 Aligned_cols=40 Identities=20% Similarity=0.343 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
..+|......-..+|..|..+|..|......|-.+|..+.
T Consensus 30 y~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rLs 69 (70)
T PF04899_consen 30 YADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERLS 69 (70)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4667777777788899999999999999988888887664
No 114
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=80.69 E-value=9.8 Score=26.20 Aligned_cols=32 Identities=16% Similarity=0.317 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 107 RKKAYLNELETRVKDLERKNSELDERLSTLQN 138 (168)
Q Consensus 107 RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~ 138 (168)
.....+..++.++..|+.+|.+|+.++..|..
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44555667777777777777777777776665
No 115
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=80.68 E-value=5.3 Score=28.03 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 119 VKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 119 v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
+..+.++|-+|+..+..|..|+..++..|..+..
T Consensus 38 ~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~ 71 (75)
T PF07989_consen 38 IEELLKENIELKVEVESLKRELQEKKKLLKEAEK 71 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888999999999999999998887654
No 116
>smart00338 BRLZ basic region leucin zipper.
Probab=80.59 E-value=7.5 Score=25.81 Aligned_cols=34 Identities=29% Similarity=0.444 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 118 RVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 118 ~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
.+..|+.+...|..++..|..++..|+..+..+.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555443
No 117
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=79.94 E-value=9.2 Score=28.60 Aligned_cols=35 Identities=26% Similarity=0.489 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHI 146 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~ 146 (168)
+..|+.++..+..++..|+..+..+.+++..|+..
T Consensus 82 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 82 LEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555555555555555555555555555543
No 118
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=79.87 E-value=16 Score=33.72 Aligned_cols=63 Identities=19% Similarity=0.322 Sum_probs=41.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 89 KRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 89 kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
++++-..++=..-.+.....+.....|+..++.|+.++..|..++.....++..+++.|..+.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~ 100 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLN 100 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHH
Confidence 444444444344444445666777788888888888888887777777777666666665543
No 119
>PF14282 FlxA: FlxA-like protein
Probab=79.55 E-value=10 Score=27.97 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 030957 129 LDERLSTLQNENQML 143 (168)
Q Consensus 129 L~~~v~~L~~En~~L 143 (168)
|..+|..|+.++..|
T Consensus 56 Lq~QI~~LqaQI~ql 70 (106)
T PF14282_consen 56 LQAQIQQLQAQIAQL 70 (106)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 120
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=79.40 E-value=6.2 Score=33.59 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 111 YLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKN 149 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~ 149 (168)
-+-+|..+++.|+.++.+|+-+|+.+..++..|.++-+.
T Consensus 55 ~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~ 93 (263)
T PRK10803 55 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 93 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777777776666666554333
No 121
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=79.17 E-value=20 Score=26.46 Aligned_cols=44 Identities=25% Similarity=0.342 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 107 RKKAYLNELETRVKDL--ERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 107 RKk~~~~~LE~~v~~L--e~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
....++..||.+++.| ..+.+.|+-.+..+.-+...|..+|+.+
T Consensus 46 ~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 46 EHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3455566666666666 5566666666666666666666666544
No 122
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=78.75 E-value=13 Score=25.01 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 111 YLNELETRVKDLERKNSELDERLSTLQNENQML 143 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~L 143 (168)
.|+.|...|..|..+..+|...|..|+.+....
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~a 36 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAA 36 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555544444444444333
No 123
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=78.74 E-value=21 Score=31.08 Aligned_cols=53 Identities=34% Similarity=0.422 Sum_probs=27.1
Q ss_pred HHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 95 LRNRVSAQQAR-ERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHIL 147 (168)
Q Consensus 95 ~rNR~AA~~sR-~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L 147 (168)
.|+.+++...- ..++..+.+|+.++..|..+...+..++..|..++..+...+
T Consensus 214 lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~ 267 (325)
T PF08317_consen 214 LRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIR 267 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444433 344555555555555555555555555555555555444443
No 124
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=78.73 E-value=8.8 Score=29.30 Aligned_cols=42 Identities=31% Similarity=0.357 Sum_probs=20.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 88 NKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSEL 129 (168)
Q Consensus 88 ~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L 129 (168)
...+++++--..+.+.--.+=...-+.|..++-.|..+|..+
T Consensus 22 ~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 22 QSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555554444444443444444455555555555555443
No 125
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=78.73 E-value=10 Score=29.81 Aligned_cols=44 Identities=32% Similarity=0.419 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 109 KAYLNELETRVKDLERKN---------SELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN---------~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
++.+..|...+..|+.+. .+|...|..|..|+..|...|..+..
T Consensus 85 ~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 85 REELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444455555544443 45788888999999999999988775
No 126
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=78.73 E-value=10 Score=25.43 Aligned_cols=37 Identities=16% Similarity=0.276 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
|..|..+|..|..+...|+..+.....|-..-.++|-
T Consensus 12 Vq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlD 48 (56)
T PF04728_consen 12 VQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555444444443
No 127
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=78.72 E-value=11 Score=25.94 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 118 RVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 118 ~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
.+..+..+...++.+++.++.||..|+..+..+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445555555666666666666666666665544
No 128
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=78.63 E-value=9.6 Score=29.07 Aligned_cols=31 Identities=35% Similarity=0.536 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 114 ELETRVKDLERKNSELDERLSTLQNENQMLR 144 (168)
Q Consensus 114 ~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr 144 (168)
....+|+.|.....+|.+++..|+.||.-||
T Consensus 64 AVREEVe~Lk~qI~eL~er~~~Le~EN~lLk 94 (123)
T KOG4797|consen 64 AVREEVEVLKEQIRELEERNSALERENSLLK 94 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555666665555
No 129
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=78.55 E-value=13 Score=27.30 Aligned_cols=43 Identities=19% Similarity=0.317 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 108 KKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 108 Kk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
+.+-+.+|+.+++.++.....|..++..|+.+...+...|..+
T Consensus 65 ~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 65 KEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666666666666666666666665543
No 130
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=78.27 E-value=22 Score=36.07 Aligned_cols=57 Identities=28% Similarity=0.500 Sum_probs=28.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 93 RLLRNRVSAQQARERKKAYLNELET-----------------RVKDLERKNSELDERLSTLQNENQMLRHILKN 149 (168)
Q Consensus 93 R~~rNR~AA~~sR~RKk~~~~~LE~-----------------~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~ 149 (168)
++.+-|..|....+.|.+|..+|-. +.+.|+.+...|+++++.|..+..-||..+.+
T Consensus 284 el~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmee 357 (1243)
T KOG0971|consen 284 ELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEE 357 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445666766666666655554422 22223344444455555555555555554443
No 131
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=78.26 E-value=18 Score=31.97 Aligned_cols=57 Identities=28% Similarity=0.407 Sum_probs=44.3
Q ss_pred HhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 96 RNRVSAQQARERKKAYLNEL-ETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 96 rNR~AA~~sR~RKk~~~~~L-E~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
++=....+|+.+.-+++-.. +.+|......-..|.+++..|+.||.-|+|+|.....
T Consensus 185 QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~ 242 (305)
T PF14915_consen 185 QRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHN 242 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777776666 4567777778888999999999999999999987653
No 132
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=78.22 E-value=21 Score=34.77 Aligned_cols=32 Identities=34% Similarity=0.534 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 114 ELETRVKDLERKNSELDERLSTLQNENQMLRH 145 (168)
Q Consensus 114 ~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~ 145 (168)
+||.++..|..+.....+++..|+.|++.||.
T Consensus 549 ~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 549 QLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443
No 133
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=78.02 E-value=8 Score=31.44 Aligned_cols=38 Identities=29% Similarity=0.392 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 114 ELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 114 ~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
+=+.++..|...|.-|+.+++.....|..|..-|..++
T Consensus 71 EEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt 108 (182)
T PF15035_consen 71 EEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLT 108 (182)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345555556666666666555555555555555443
No 134
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=77.83 E-value=3.9 Score=27.80 Aligned_cols=38 Identities=24% Similarity=0.357 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 030957 110 AYLNELETRVKDLERKNSE----LDERLSTLQNENQMLRHIL 147 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~----L~~~v~~L~~En~~Lr~~L 147 (168)
.+|..||.-+..|+.+... |..+|+.|+.+|..|...|
T Consensus 3 ~qv~s~e~~i~FLq~eH~~tL~~LH~EIe~Lq~~~~dL~~kL 44 (60)
T PF14916_consen 3 QQVQSLEKSILFLQQEHAQTLKGLHAEIERLQKRNKDLTFKL 44 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceee
Confidence 3567777788888777654 5566666666666665555
No 135
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=77.79 E-value=10 Score=26.36 Aligned_cols=39 Identities=31% Similarity=0.526 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
.-|..|...+.+++.....|..++..+..+...|+..|.
T Consensus 33 ~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 33 NTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345556666666666666666666666666666666654
No 136
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=77.65 E-value=8.9 Score=34.60 Aligned_cols=37 Identities=19% Similarity=0.216 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 115 LETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 115 LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
|+.++..|+.+|..|..++..+..|+..|+..|..+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (398)
T PTZ00454 27 LEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQ 63 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555555555555555666666666665554
No 137
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=77.06 E-value=8 Score=33.40 Aligned_cols=42 Identities=26% Similarity=0.382 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 030957 108 KKAYLNELETRVKDLERKNSE---LDERLSTLQNENQMLRHILKN 149 (168)
Q Consensus 108 Kk~~~~~LE~~v~~Le~eN~~---L~~~v~~L~~En~~Lr~~L~~ 149 (168)
+-.+..+|..+.+.|..++.+ +..++..|++||+.||..|.-
T Consensus 64 ~~~~~~~~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL~~ 108 (284)
T COG1792 64 FLKSLKDLALENEELKKELAELEQLLEEVESLEEENKRLKELLDF 108 (284)
T ss_pred HHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 334455556666666666654 455677889999999998843
No 138
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=77.04 E-value=12 Score=29.09 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030957 129 LDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 129 L~~~v~~L~~En~~Lr~~L~ 148 (168)
|..++..|+.++..|...|.
T Consensus 40 L~~K~~~lE~eld~~~~~l~ 59 (143)
T PF12718_consen 40 LQKKNQQLEEELDKLEEQLK 59 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 139
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=77.02 E-value=33 Score=27.57 Aligned_cols=48 Identities=23% Similarity=0.346 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 104 ARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 104 sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
.+..-+..+.+|+..+.++..-|..|+.++..|.-++.+|...+..+.
T Consensus 124 ~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~ 171 (194)
T PF08614_consen 124 ELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLE 171 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335556677777777777777788888888888888888887777664
No 140
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=76.70 E-value=5.8 Score=29.34 Aligned_cols=42 Identities=33% Similarity=0.359 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcccc
Q 030957 113 NELETRVKDLERKNSEL--DERLSTLQNENQMLRHILKNTTASR 154 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~L--~~~v~~L~~En~~Lr~~L~~~~~~~ 154 (168)
..++.++..+|.+...| +..+..|+-+...|+-.+..+.+.+
T Consensus 45 ~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l 88 (106)
T PF10805_consen 45 DEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARL 88 (106)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33366666666666666 6666666777777766666665443
No 141
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=76.51 E-value=7.4 Score=33.89 Aligned_cols=45 Identities=20% Similarity=0.332 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTASR 154 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~ 154 (168)
.-++.|+.++..|..+|.+|+.+++.|..++....+.+..+....
T Consensus 32 ~l~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~~~~l 76 (308)
T PF11382_consen 32 NLIDSLEDQFDSLREENDELRAELDALQAQLNAADQFIAAVAPRL 76 (308)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456889999999999999999999999999999988887776543
No 142
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=76.50 E-value=5.4 Score=30.58 Aligned_cols=27 Identities=22% Similarity=0.437 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 109 KAYLNELETRVKDLERKNSELDERLST 135 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~~~v~~ 135 (168)
..-|++|..++..|+-||..|+.+|..
T Consensus 2 ~~t~EeLaaeL~kLqmENk~LKkkl~~ 28 (118)
T PF05812_consen 2 DMTMEELAAELQKLQMENKALKKKLRQ 28 (118)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456899999999999999999988764
No 143
>PF05300 DUF737: Protein of unknown function (DUF737); InterPro: IPR007964 This family consists of several uncharacterised mammalian proteins of unknown function.
Probab=76.14 E-value=13 Score=30.51 Aligned_cols=48 Identities=25% Similarity=0.452 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 97 NRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLR 144 (168)
Q Consensus 97 NR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr 144 (168)
-|.++..-|.+-+.+..+|+.+-.+|.....-.+++|..|+.-|..+=
T Consensus 121 er~~~~~E~~ka~~la~qLe~ke~el~~~d~fykeql~~le~k~~e~y 168 (187)
T PF05300_consen 121 ERASTEQERQKAKQLARQLEEKEAELKKQDAFYKEQLARLEEKNAEFY 168 (187)
T ss_pred hhhcchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444556677778899999999999999999999999998887653
No 144
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=76.12 E-value=11 Score=28.66 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQ 137 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~ 137 (168)
+..|...+..|-.||..|+-+.+.|+
T Consensus 24 l~~lK~~l~~lvEEN~~L~lENe~LR 49 (114)
T COG4467 24 LGGLKQHLGSLVEENTALRLENEKLR 49 (114)
T ss_pred HHHHHHHHHHHHHhhHHHHhhHHHHH
Confidence 33444444444444444444444444
No 145
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.02 E-value=10 Score=26.82 Aligned_cols=18 Identities=39% Similarity=0.534 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 030957 120 KDLERKNSELDERLSTLQ 137 (168)
Q Consensus 120 ~~Le~eN~~L~~~v~~L~ 137 (168)
+.|+.+|.+|+.+...++
T Consensus 49 eaL~~eneqlk~e~~~WQ 66 (79)
T COG3074 49 EALERENEQLKEEQNGWQ 66 (79)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444444
No 146
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=75.84 E-value=28 Score=27.81 Aligned_cols=37 Identities=16% Similarity=0.211 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 116 ETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 116 E~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
..+...+..|..+|+.++...+.+...|+.|..++..
T Consensus 153 ~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 153 KEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566777777888888888888888888877653
No 147
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=75.50 E-value=33 Score=30.58 Aligned_cols=61 Identities=33% Similarity=0.391 Sum_probs=39.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 89 KRLKRLLRNRVSAQQARERKKAYLNELET-------------------------RVKDLERKNSELDERLSTLQNENQML 143 (168)
Q Consensus 89 kr~rR~~rNR~AA~~sR~RKk~~~~~LE~-------------------------~v~~Le~eN~~L~~~v~~L~~En~~L 143 (168)
++.++++++||+....=.||...+.-=+. +|-.|..++.+|+++|..++.|..-+
T Consensus 122 ~e~r~~lk~RI~rSEAFKRKllE~kYD~~mL~qLr~g~~~~~~~~~~~~~~~~D~v~LLqkk~~~l~~~l~~~~~eL~~~ 201 (323)
T PF08537_consen 122 REERRLLKDRILRSEAFKRKLLEKKYDKRMLEQLRRGRSKNRHNRPRNPSSNSDRVILLQKKIDELEERLNDLEKELEIT 201 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44457899999998888777554432222 33345667777777777777776666
Q ss_pred HHHHHH
Q 030957 144 RHILKN 149 (168)
Q Consensus 144 r~~L~~ 149 (168)
+..|..
T Consensus 202 ~k~L~f 207 (323)
T PF08537_consen 202 KKDLKF 207 (323)
T ss_pred HHHHHH
Confidence 655543
No 148
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=74.93 E-value=13 Score=30.89 Aligned_cols=39 Identities=31% Similarity=0.364 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 111 YLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKN 149 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~ 149 (168)
.+++|-.-+..|+.+|..|-++...|+.|++.|-..+..
T Consensus 68 EledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~ 106 (193)
T PF14662_consen 68 ELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIET 106 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444433
No 149
>PHA03162 hypothetical protein; Provisional
Probab=74.79 E-value=4.5 Score=31.65 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 030957 128 ELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 128 ~L~~~v~~L~~En~~Lr~~L~ 148 (168)
+|..+|..|+.||..|+++|.
T Consensus 17 eLaaeL~kLqmENK~LKkkl~ 37 (135)
T PHA03162 17 DLAAEIAKLQLENKALKKKIK 37 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555553
No 150
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=74.31 E-value=13 Score=27.05 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhcc
Q 030957 118 RVKDLERKNSELDERLS------TLQNENQMLRHILKNTTA 152 (168)
Q Consensus 118 ~v~~Le~eN~~L~~~v~------~L~~En~~Lr~~L~~~~~ 152 (168)
+...|..|+.-|+.+|+ ....||..|+.+|..+..
T Consensus 25 e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~ 65 (86)
T PF12711_consen 25 ENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQS 65 (86)
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555554333 455678888887777654
No 151
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=74.20 E-value=4 Score=32.97 Aligned_cols=29 Identities=21% Similarity=0.433 Sum_probs=4.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 120 KDLERKNSELDERLSTLQNENQMLRHILKN 149 (168)
Q Consensus 120 ~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~ 149 (168)
+.|..+++.|+.++..|..|+ .+++++..
T Consensus 27 E~L~~~~QRLkDE~RDLKqEl-~V~ek~~~ 55 (166)
T PF04880_consen 27 ENLREEVQRLKDELRDLKQEL-IVQEKLRK 55 (166)
T ss_dssp HHHHHCH-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHhhh
Confidence 336666666666666666666 55555543
No 152
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=74.16 E-value=37 Score=25.99 Aligned_cols=48 Identities=19% Similarity=0.356 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 97 NRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLR 144 (168)
Q Consensus 97 NR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr 144 (168)
.|+....-..+...-+..|+..+..|+.++..+..++..++.....|.
T Consensus 53 ~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~ 100 (151)
T PF11559_consen 53 QREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQ 100 (151)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444333333333
No 153
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=74.12 E-value=10 Score=31.88 Aligned_cols=42 Identities=21% Similarity=0.403 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 106 ERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHIL 147 (168)
Q Consensus 106 ~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L 147 (168)
+++..+++.++.++..|.+.-..+..+.+.|..|+..|+.++
T Consensus 168 ~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 168 EKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666666666666777777766
No 154
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=74.11 E-value=34 Score=28.56 Aligned_cols=28 Identities=21% Similarity=0.490 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 111 YLNELETRVKDLERKNSELDERLSTLQN 138 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~~ 138 (168)
|+..|+..+..++.+...|..++..+..
T Consensus 71 ~~~~l~~~v~~q~~el~~L~~qi~~~~~ 98 (251)
T PF11932_consen 71 YNEQLERQVASQEQELASLEQQIEQIEE 98 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 155
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=73.68 E-value=9.2 Score=27.57 Aligned_cols=28 Identities=29% Similarity=0.379 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 121 DLERKNSELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 121 ~Le~eN~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
.|..++..|+.++..|..+|..|+++|.
T Consensus 72 ~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 72 LLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455566677777777777777777764
No 156
>PHA03162 hypothetical protein; Provisional
Probab=73.49 E-value=4.9 Score=31.42 Aligned_cols=26 Identities=15% Similarity=0.436 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 108 KKAYLNELETRVKDLERKNSELDERL 133 (168)
Q Consensus 108 Kk~~~~~LE~~v~~Le~eN~~L~~~v 133 (168)
+..-|++|..++..|+-||..|+.+|
T Consensus 11 ~~~tmEeLaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 11 AQPTMEDLAAEIAKLQLENKALKKKI 36 (135)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44568999999999999999999888
No 157
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=73.16 E-value=41 Score=29.82 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 127 SELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 127 ~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
+.|+.++..|..|+..|...|...
T Consensus 181 N~L~Kqm~~l~~eKr~Lq~~l~~~ 204 (310)
T PF09755_consen 181 NRLWKQMDKLEAEKRRLQEKLEQP 204 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccc
Confidence 458889999999999999998763
No 158
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=73.09 E-value=10 Score=35.30 Aligned_cols=33 Identities=18% Similarity=0.365 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 030957 122 LERKNSELDERLSTLQNENQMLRHILKNTTASR 154 (168)
Q Consensus 122 Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~ 154 (168)
|..+..+|..+.+.|..+.+.|..+|..+...+
T Consensus 107 v~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 107 VQSETQELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677788888889888988888887544
No 159
>PHA03155 hypothetical protein; Provisional
Probab=73.04 E-value=5.3 Score=30.48 Aligned_cols=21 Identities=38% Similarity=0.543 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 030957 128 ELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 128 ~L~~~v~~L~~En~~Lr~~L~ 148 (168)
+|..+|..|+-||..|+++|.
T Consensus 12 eLaaeL~kL~~ENK~LKkkl~ 32 (115)
T PHA03155 12 ELEKELQKLKIENKALKKKLL 32 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555553
No 160
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=72.97 E-value=23 Score=34.56 Aligned_cols=40 Identities=18% Similarity=0.224 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 113 NELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
+.+..+..+||.|...|+.++...+.++..|...+.++..
T Consensus 541 e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 541 ESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777777777777777776655543
No 161
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=72.94 E-value=17 Score=26.55 Aligned_cols=38 Identities=26% Similarity=0.422 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 113 NELETRVKDLERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
+.|+.++..|+.....|...+..+..+...|+..|..+
T Consensus 90 ~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 90 EFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555555555566666666666666666665543
No 162
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=72.50 E-value=14 Score=23.74 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 126 NSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 126 N~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
...|...|..|..+|..|++.+..|
T Consensus 27 ~~~le~~~~~L~~en~~L~~~i~~L 51 (54)
T PF07716_consen 27 EEELEQEVQELEEENEQLRQEIAQL 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666554
No 163
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=72.16 E-value=24 Score=24.52 Aligned_cols=43 Identities=19% Similarity=0.302 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 108 KKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 108 Kk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
|-+.|..|-.+-+.|......+...|..|+..+..+-..+..+
T Consensus 10 KDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l 52 (74)
T PF12329_consen 10 KDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKEL 52 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777766655555555555444444444444333
No 164
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=72.01 E-value=18 Score=29.38 Aligned_cols=44 Identities=16% Similarity=0.290 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
++++..|+.+.+.|+.+|..|+.+...+..+...|..++.....
T Consensus 110 ~~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~Im~rark 153 (170)
T PRK13923 110 SEQIGKLQEEEEKLSWENQTLKQELAITEEDYRALIVIMNRARR 153 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999888876654
No 165
>PHA03155 hypothetical protein; Provisional
Probab=72.00 E-value=5.6 Score=30.37 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 111 YLNELETRVKDLERKNSELDERLST 135 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~~ 135 (168)
-+++|+.++..|+-||..|+.+|..
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4789999999999999999998854
No 166
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=71.65 E-value=12 Score=31.80 Aligned_cols=39 Identities=18% Similarity=0.329 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 106 ERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 106 ~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
.|.++||..|+.+.. .....|+.|..|+..|+++|.++.
T Consensus 101 ~kA~~~i~~l~~~~~-------~~~~~~e~l~~e~~~l~~rl~ql~ 139 (232)
T KOG2483|consen 101 DKALEHIQSLERKSA-------TQQQDIEDLSRENRKLKARLEQLS 139 (232)
T ss_pred hhHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456666666665555 555566667777777777777765
No 167
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=70.98 E-value=11 Score=32.91 Aligned_cols=39 Identities=26% Similarity=0.438 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 114 ELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 114 ~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
.|+.+++.|+.++.+|..++..++.|...|++.|..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (364)
T TIGR01242 3 ELDVRIRKLEDEKRSLEKEKIRLERELERLRSEIERLRS 41 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 445556666666666666666677777777777766653
No 168
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=70.94 E-value=9.7 Score=34.32 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNE 139 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~E 139 (168)
.-.|..+-..|.+||..|+.+++.|++|
T Consensus 34 ~~aLr~EN~~LKkEN~~Lk~eVerLE~e 61 (420)
T PF07407_consen 34 NFALRMENHSLKKENNDLKIEVERLENE 61 (420)
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777777443
No 169
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=70.73 E-value=47 Score=26.94 Aligned_cols=19 Identities=37% Similarity=0.732 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030957 114 ELETRVKDLERKNSELDER 132 (168)
Q Consensus 114 ~LE~~v~~Le~eN~~L~~~ 132 (168)
+|+.++..|+.++..|..+
T Consensus 124 ~l~~~i~~L~~e~~~L~~~ 142 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQ 142 (189)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444433333333
No 170
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=70.57 E-value=40 Score=27.90 Aligned_cols=41 Identities=24% Similarity=0.361 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 106 ERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHI 146 (168)
Q Consensus 106 ~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~ 146 (168)
..++..+..|..++..+..++..++.++..+...+...+..
T Consensus 66 ~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~ 106 (302)
T PF10186_consen 66 EELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSR 106 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444443333
No 171
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=70.56 E-value=53 Score=27.87 Aligned_cols=45 Identities=9% Similarity=0.169 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 107 RKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 107 RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
-=...|++|+.+|..|...++++.-+|+.|...-..|-..|....
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~ 102 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLS 102 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446789999999999999999999999999988877777766543
No 172
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=70.36 E-value=41 Score=25.90 Aligned_cols=47 Identities=21% Similarity=0.212 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCC
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTASRRGGS 158 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~~~~~ 158 (168)
-.+|..++..|+.++..++.-...|..-+.||...|++-......-.
T Consensus 27 RaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~ 73 (134)
T PF08232_consen 27 RAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLK 73 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 35788889999999999999999999999999999999887665533
No 173
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=70.00 E-value=29 Score=33.01 Aligned_cols=38 Identities=37% Similarity=0.580 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHILKN 149 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~ 149 (168)
+.+|+.++..+...+..|..++..|..||-.|+..|..
T Consensus 150 l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~ 187 (546)
T KOG0977|consen 150 LSELEAEINTLKRRIKALEDELKRLKAENSRLREELAR 187 (546)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 33444444444444444444444444444444444433
No 174
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=69.76 E-value=12 Score=31.49 Aligned_cols=36 Identities=25% Similarity=0.243 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcc
Q 030957 117 TRVKDLERKNSELDERLSTLQNENQML---RHILKNTTA 152 (168)
Q Consensus 117 ~~v~~Le~eN~~L~~~v~~L~~En~~L---r~~L~~~~~ 152 (168)
.....|.+||.+|++++..|+.++..| +....++..
T Consensus 69 ~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~ 107 (276)
T PRK13922 69 ASLFDLREENEELKKELLELESRLQELEQLEAENARLRE 107 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678889999999999998888854 444444443
No 175
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=69.68 E-value=15 Score=25.43 Aligned_cols=35 Identities=23% Similarity=0.504 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 114 ELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 114 ~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
++...+..|-.+|..|+. .|..-|.+||+++..+.
T Consensus 3 e~~~~l~~LL~EN~~LKe---alrQ~N~~Mker~e~l~ 37 (68)
T PF11577_consen 3 EMQQQLQELLQENQDLKE---ALRQNNQAMKERFEELL 37 (68)
T ss_dssp ----HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHH
Confidence 344567777788888874 45666777777776554
No 176
>PRK09039 hypothetical protein; Validated
Probab=69.62 E-value=45 Score=29.50 Aligned_cols=30 Identities=13% Similarity=0.117 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 122 LERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 122 Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
+..+..+...+|..|..|+..||.+|..+.
T Consensus 128 ~k~~~se~~~~V~~L~~qI~aLr~Qla~le 157 (343)
T PRK09039 128 EKQVSARALAQVELLNQQIAALRRQLAALE 157 (343)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444445555555555555555443
No 177
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=69.61 E-value=14 Score=34.47 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 030957 113 NELETRVKDLERKNSELDERL 133 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~L~~~v 133 (168)
.+++.+++.|+.+|..|+.++
T Consensus 100 ~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 100 GDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444
No 178
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=69.25 E-value=9.6 Score=25.15 Aligned_cols=32 Identities=25% Similarity=0.305 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 106 ERKKAYLNELETRVKDLERKNSELDERLSTLQ 137 (168)
Q Consensus 106 ~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~ 137 (168)
+++..--.....++..|+.+|..|+.++..++
T Consensus 18 E~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 18 EARSLDRSAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HhccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444456677889999999999999888765
No 179
>COG4420 Predicted membrane protein [Function unknown]
Probab=69.08 E-value=30 Score=28.63 Aligned_cols=62 Identities=23% Similarity=0.273 Sum_probs=43.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 030957 92 KRLLRNRVSAQQARERKKAYLNELET--RVKDLERKNSELDERLSTLQNENQMLRHILKNTTAS 153 (168)
Q Consensus 92 rR~~rNR~AA~~sR~RKk~~~~~LE~--~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~ 153 (168)
--+-+||.|++---.-...|--.|.. ++..|-.+...|+..+..+..|+..||+.|.++...
T Consensus 107 IlmSQNRQa~rDr~~a~~d~qvnlkaE~e~~~l~~kLd~lr~~lg~~~~~l~~lre~l~~i~~~ 170 (191)
T COG4420 107 ILMSQNRQAERDRLRAELDYQVNLKAEQEVAALHEKLDELRLDLGYVRDELDDLRELLAEIEPE 170 (191)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhchHHHHHHHHHhCcc
Confidence 34668988877655556666655544 455566777777777777778888888888877653
No 180
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=69.08 E-value=8.5 Score=31.05 Aligned_cols=30 Identities=17% Similarity=0.237 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 118 RVKDLERKNSELDERLSTLQNENQMLRHIL 147 (168)
Q Consensus 118 ~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L 147 (168)
++..+|.|+..|++-|..-++....||..|
T Consensus 37 EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 37 ELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 444455555555555555555555555554
No 181
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=68.92 E-value=20 Score=32.00 Aligned_cols=40 Identities=28% Similarity=0.375 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
+.+|+.+++.|+..+..|..++..+..+...|+..|..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (389)
T PRK03992 10 NSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLK 49 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445566666666666666666666666666666666554
No 182
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=68.90 E-value=56 Score=28.62 Aligned_cols=59 Identities=22% Similarity=0.324 Sum_probs=37.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 89 KRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHIL 147 (168)
Q Consensus 89 kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L 147 (168)
+.+.+.+.-|+--..|..--.+|-.+|+.++.+|+..|..|...+..|..|...++..+
T Consensus 24 ~ykq~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~ 82 (333)
T KOG1853|consen 24 EYKQHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQ 82 (333)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666777777777777777777777777766666666555555444433
No 183
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=68.89 E-value=36 Score=26.82 Aligned_cols=46 Identities=30% Similarity=0.501 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH----HHHHHHHH
Q 030957 104 ARERKKAYLNELETRVKDLER---KNSELDERLSTLQNENQ----MLRHILKN 149 (168)
Q Consensus 104 sR~RKk~~~~~LE~~v~~Le~---eN~~L~~~v~~L~~En~----~Lr~~L~~ 149 (168)
-+.--+..|.+....+..|.. .|..|+.+|+.|+.+|. .+...|..
T Consensus 28 e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~ 80 (155)
T PF06810_consen 28 ERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQ 80 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666766 67778888888887777 44444443
No 184
>PF14645 Chibby: Chibby family
Probab=68.69 E-value=9.6 Score=28.86 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 030957 118 RVKDLERKNSELDERLST 135 (168)
Q Consensus 118 ~v~~Le~eN~~L~~~v~~ 135 (168)
+.+.|++||.-|+-+++-
T Consensus 79 ~n~~L~EENN~Lklk~el 96 (116)
T PF14645_consen 79 ENQQLEEENNLLKLKIEL 96 (116)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444455555554444443
No 185
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=68.53 E-value=42 Score=31.00 Aligned_cols=70 Identities=11% Similarity=0.155 Sum_probs=50.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 030957 88 NKRLKRLLRNRVSAQQARERKK------------AYLNELETRVKDLERKNSELDE-------RLSTLQNENQMLRHILK 148 (168)
Q Consensus 88 ~kr~rR~~rNR~AA~~sR~RKk------------~~~~~LE~~v~~Le~eN~~L~~-------~v~~L~~En~~Lr~~L~ 148 (168)
.+...|+..-|.+=..+|.+.. ..|..||.++..++.+...|.. +|..|..++..|+++|.
T Consensus 252 ~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa 331 (434)
T PRK15178 252 KSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIG 331 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHH
Confidence 4455566677777777887753 5677788888888777777754 56677888888888888
Q ss_pred HhccccCCC
Q 030957 149 NTTASRRGG 157 (168)
Q Consensus 149 ~~~~~~~~~ 157 (168)
.....+.++
T Consensus 332 ~er~kl~~~ 340 (434)
T PRK15178 332 EQRNRLSNK 340 (434)
T ss_pred HHHHHhhcC
Confidence 877765443
No 186
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=68.35 E-value=22 Score=31.72 Aligned_cols=20 Identities=25% Similarity=0.371 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030957 115 LETRVKDLERKNSELDERLS 134 (168)
Q Consensus 115 LE~~v~~Le~eN~~L~~~v~ 134 (168)
|+.+.+.|+.++..|..+++
T Consensus 149 L~~enerL~~e~~~~~~qlE 168 (342)
T PF06632_consen 149 LQKENERLESEANKLLKQLE 168 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444333
No 187
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=68.30 E-value=68 Score=26.59 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 118 RVKDLERKNSELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 118 ~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
++..|+.+...++.++..|+..+..|..++.
T Consensus 155 ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~ 185 (192)
T PF11180_consen 155 EAQALEAERRAAQAQLRQLQRQVRQLQRQAN 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333444444444555555555554444443
No 188
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=68.15 E-value=16 Score=27.57 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030957 118 RVKDLERKNSELDERLSTLQNE 139 (168)
Q Consensus 118 ~v~~Le~eN~~L~~~v~~L~~E 139 (168)
+...|++||.-|+-+|+-|..-
T Consensus 80 k~~~LeEENNlLklKievLLDM 101 (108)
T cd07429 80 KNQQLEEENNLLKLKIEVLLDM 101 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888888888777766543
No 189
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=68.14 E-value=31 Score=23.45 Aligned_cols=39 Identities=18% Similarity=0.365 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
+++++.++..|+..+..+..++..+......|...+..+
T Consensus 15 l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~ 53 (71)
T PF10779_consen 15 LDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWI 53 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555554443
No 190
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=67.98 E-value=27 Score=26.40 Aligned_cols=32 Identities=25% Similarity=0.339 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 119 VKDLERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 119 v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
+..|+.....|...+..+..+...+.+.|.++
T Consensus 103 ~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l 134 (140)
T PRK03947 103 KEELEKALEKLEEALQKLASRIAQLAQELQQL 134 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444444433
No 191
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=67.96 E-value=16 Score=34.26 Aligned_cols=41 Identities=24% Similarity=0.349 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
+.+|..++..|...|..|.+.+...+.++..|+.+|..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 43 (512)
T TIGR03689 3 LRELQATNSSLGARNAKLAELLKAARDKLSKLKSQLEQLAQ 43 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45688899999999999999999999999999999999875
No 192
>PRK11546 zraP zinc resistance protein; Provisional
Probab=67.95 E-value=55 Score=25.82 Aligned_cols=30 Identities=17% Similarity=0.122 Sum_probs=14.1
Q ss_pred CcHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 030957 84 ADKENKRLKRLLRNRVSAQQARERKKAYLN 113 (168)
Q Consensus 84 ~e~e~kr~rR~~rNR~AA~~sR~RKk~~~~ 113 (168)
.+.|....-..+.+.-.++-..-|.+.+..
T Consensus 44 LT~EQQa~~q~I~~~f~~~t~~LRqqL~aK 73 (143)
T PRK11546 44 LTTEQQAAWQKIHNDFYAQTSALRQQLVSK 73 (143)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445555555444444444433
No 193
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=67.80 E-value=18 Score=30.14 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHhcc
Q 030957 136 LQNENQMLRHILKNTTA 152 (168)
Q Consensus 136 L~~En~~Lr~~L~~~~~ 152 (168)
|....++|..+|..|..
T Consensus 154 lae~~~~la~~ie~l~~ 170 (200)
T PF07412_consen 154 LAEHVQYLAEVIERLTG 170 (200)
T ss_dssp HHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 44445566666666654
No 194
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=67.64 E-value=17 Score=26.22 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 121 DLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 121 ~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
.|..+-..|+.++..|+.+...+...|..+.
T Consensus 71 ~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 71 ELKAEVKELKEEIKELEEQLKELEEELNELL 101 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444555555555555554444443
No 195
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=67.61 E-value=12 Score=30.77 Aligned_cols=13 Identities=31% Similarity=0.521 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 030957 137 QNENQMLRHILKN 149 (168)
Q Consensus 137 ~~En~~Lr~~L~~ 149 (168)
.+|+..|+.+|..
T Consensus 67 ~eEvr~Lr~~LR~ 79 (194)
T PF15619_consen 67 NEEVRVLRERLRK 79 (194)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 196
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=67.61 E-value=57 Score=28.66 Aligned_cols=50 Identities=24% Similarity=0.261 Sum_probs=24.1
Q ss_pred hHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 97 NRVSAQQAR-ERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHI 146 (168)
Q Consensus 97 NR~AA~~sR-~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~ 146 (168)
+.++....- .-++..+.+++.++..|......+..+...+..+++.+...
T Consensus 211 ~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~ 261 (312)
T smart00787 211 EKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKK 261 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455444333 44444455555555555555554444444444444444433
No 197
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=67.54 E-value=9.1 Score=31.70 Aligned_cols=55 Identities=25% Similarity=0.201 Sum_probs=41.4
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 98 RVSAQQARE-RKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 98 R~AA~~sR~-RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
|.-|-=|.. |-+-...+||..+..|......|......|+.|+..|+.+|..+..
T Consensus 92 RQVavWFQNRRARwK~kqlE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~~~ 147 (198)
T KOG0483|consen 92 RQVAVWFQNRRARWKTKQLEKDYESLKRQLESLRSENDRLQSEVQELVAELSSLKR 147 (198)
T ss_pred hHHHHHHhhccccccchhhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhh
Confidence 444444442 3345567899999999999999999999999999999998886543
No 198
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=67.42 E-value=17 Score=28.54 Aligned_cols=26 Identities=23% Similarity=0.528 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQ 137 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~ 137 (168)
+.+|..++..|..++..|..++..|.
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~ 106 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLS 106 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777777777777777766666543
No 199
>PF15556 Zwint: ZW10 interactor
Probab=67.40 E-value=66 Score=27.26 Aligned_cols=57 Identities=21% Similarity=0.284 Sum_probs=51.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 95 LRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 95 ~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
.+.++|..++|--.|+|.-.-|..+..|...-.+++++...-+.|...|.+.|..+.
T Consensus 112 aKKqva~eK~r~AQkqwqlqQeK~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~~lk 168 (252)
T PF15556_consen 112 AKKQVAMEKLRAAQKQWQLQQEKHLQHLAEVSAEVRERQTGTQQELERLYQELGTLK 168 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999998775
No 200
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=67.40 E-value=14 Score=31.44 Aligned_cols=49 Identities=22% Similarity=0.312 Sum_probs=34.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 89 KRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQN 138 (168)
Q Consensus 89 kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~ 138 (168)
.|-|.+.||.+==..- .+-++.+..|..+++.|...|..|=++|.-|+.
T Consensus 87 QRDRFR~Rn~ELE~el-r~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 87 QRDRFRQRNAELEEEL-RKQQQTISSLRREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555566665544444 334566788888999999999998888887765
No 201
>smart00340 HALZ homeobox associated leucin zipper.
Probab=67.34 E-value=20 Score=22.88 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Q 030957 129 LDERLSTLQNENQMLRHILKNTTAS 153 (168)
Q Consensus 129 L~~~v~~L~~En~~Lr~~L~~~~~~ 153 (168)
|++-.+.|..||..|...|.++...
T Consensus 10 LKrcce~LteeNrRL~ke~~eLral 34 (44)
T smart00340 10 LKRCCESLTEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444444555555555555555443
No 202
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.25 E-value=42 Score=33.70 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 030957 129 LDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 129 L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
|+.....|+-|...|..+|+++.
T Consensus 435 ~nak~~ql~~eletLn~k~qqls 457 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLS 457 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444555555554444444
No 203
>PF14645 Chibby: Chibby family
Probab=66.61 E-value=17 Score=27.58 Aligned_cols=31 Identities=26% Similarity=0.236 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 113 NELETRVKDLERKNSELDERLSTLQNENQML 143 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~L~~~v~~L~~En~~L 143 (168)
..|+.+...|.-++.-|-.-+.....|...+
T Consensus 81 ~~L~EENN~Lklk~elLlDMLtettae~~l~ 111 (116)
T PF14645_consen 81 QQLEEENNLLKLKIELLLDMLTETTAEAHLL 111 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443333
No 204
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=66.55 E-value=52 Score=24.61 Aligned_cols=47 Identities=21% Similarity=0.317 Sum_probs=32.8
Q ss_pred HHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 95 LRNRVSAQQARERK-KAYLNELETRVKDLERKNSELDERLSTLQNENQ 141 (168)
Q Consensus 95 ~rNR~AA~~sR~RK-k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~ 141 (168)
++.+.+.-+-.-+. ...+..++.+++.|.=.|.+|..+|+.|+.|..
T Consensus 24 EQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 24 EQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444443 347778888888888888888888888887766
No 205
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=66.48 E-value=18 Score=26.23 Aligned_cols=24 Identities=13% Similarity=0.274 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 115 LETRVKDLERKNSELDERLSTLQN 138 (168)
Q Consensus 115 LE~~v~~Le~eN~~L~~~v~~L~~ 138 (168)
+..+...|..+|.+|+.+....+.
T Consensus 28 a~~~~~kL~~en~qlk~Ek~~~~~ 51 (87)
T PF10883_consen 28 AKKQNAKLQKENEQLKTEKAVAET 51 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455555555555554444433
No 206
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=66.48 E-value=25 Score=26.20 Aligned_cols=39 Identities=18% Similarity=0.330 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 114 ELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 114 ~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
.|...+..|+.++..+..+++.|...+..+...++.+..
T Consensus 77 ~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~ 115 (118)
T PF13815_consen 77 YLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKK 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666666666666666666666666543
No 207
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.39 E-value=17 Score=31.42 Aligned_cols=49 Identities=14% Similarity=0.308 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 101 AQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 101 A~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
....++-.+..+++++.++..|+.+...|+..|.. .+.-|..+++.+..
T Consensus 64 ~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~---r~~~l~~raRAmq~ 112 (265)
T COG3883 64 IQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVE---RQELLKKRARAMQV 112 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 33344445555555555555555555555444332 23445555554443
No 208
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=66.21 E-value=11 Score=31.36 Aligned_cols=34 Identities=24% Similarity=0.315 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 114 ELETRVKDLERKNSELDERLSTLQNENQMLRHIL 147 (168)
Q Consensus 114 ~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L 147 (168)
+|..++..+|.|+.-|+.-+..-++-+..|+..|
T Consensus 48 elr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKL 81 (208)
T KOG4010|consen 48 ELRTELAKVEEEIVTLRQVLAAKERHAAELKRKL 81 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566666666666666665555555555554
No 209
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=65.99 E-value=15 Score=32.43 Aligned_cols=30 Identities=33% Similarity=0.512 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNE 139 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~E 139 (168)
..++.|..+++.|+.+|..|+.+...|..|
T Consensus 160 ~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~e 189 (306)
T PF04849_consen 160 IQLEALQEKLKSLEEENEQLRSEASQLKTE 189 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 345777888888888888888877777643
No 210
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=65.77 E-value=40 Score=24.10 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 128 ELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 128 ~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
+|-.+|..|+.|+..|.+.|..+.
T Consensus 58 eLL~EIA~lE~eV~~LE~~v~~L~ 81 (88)
T PF14389_consen 58 ELLEEIALLEAEVAKLEQKVLSLY 81 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777766554
No 211
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=65.45 E-value=29 Score=25.75 Aligned_cols=34 Identities=18% Similarity=0.153 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLRH 145 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~ 145 (168)
+..++.++..|+.++.+|+.+++-|..-....+.
T Consensus 73 ~~~~~~ei~~L~~el~~L~~E~diLKKa~~~~~~ 106 (121)
T PRK09413 73 LAAAMKQIKELQRLLGKKTMENELLKEAVEYGRA 106 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 3445566666666666666666666665555443
No 212
>PRK11239 hypothetical protein; Provisional
Probab=65.28 E-value=13 Score=31.33 Aligned_cols=27 Identities=37% Similarity=0.523 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQN 138 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~ 138 (168)
+..|+.+|..|+.+..+|+++++.|..
T Consensus 185 ~~~Le~rv~~Le~eva~L~~~l~~l~~ 211 (215)
T PRK11239 185 DGDLQARVEALEIEVAELKQRLDSLLA 211 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355777777777777777766666654
No 213
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=65.17 E-value=28 Score=28.54 Aligned_cols=27 Identities=30% Similarity=0.470 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 121 DLERKNSELDERLSTLQNENQMLRHIL 147 (168)
Q Consensus 121 ~Le~eN~~L~~~v~~L~~En~~Lr~~L 147 (168)
++..+|..|..-+..++.|+..|+..|
T Consensus 52 ei~~eN~~L~epL~~a~~e~~eL~k~L 78 (201)
T PF13851_consen 52 EISQENKRLSEPLKKAEEEVEELRKQL 78 (201)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444333
No 214
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=65.09 E-value=15 Score=28.16 Aligned_cols=35 Identities=20% Similarity=0.374 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Q 030957 123 ERKNSELDERLSTLQNENQMLRHILKNTTASRRGG 157 (168)
Q Consensus 123 e~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~~~~ 157 (168)
+.....|.-+|..|++.-..|+.+|.++...+..-
T Consensus 76 ~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 76 EERKETLELRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555556666666666666666554443
No 215
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.07 E-value=44 Score=31.14 Aligned_cols=32 Identities=22% Similarity=0.201 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 030957 87 ENKRLKRLLRNRVSAQQARERKKAYLNELETR 118 (168)
Q Consensus 87 e~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~ 118 (168)
+..---+++.||..-++.+++++..|..|-..
T Consensus 98 e~q~~~~leqertq~qq~~e~~erEv~~l~~l 129 (542)
T KOG0993|consen 98 ECQMCQNLEQERTQLQQNEEKLEREVKALMEL 129 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455567888888888888877766555443
No 216
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=65.06 E-value=39 Score=28.41 Aligned_cols=55 Identities=18% Similarity=0.247 Sum_probs=47.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 93 RLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHIL 147 (168)
Q Consensus 93 R~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L 147 (168)
-++.=|++|+.-.+|+++.+..|..=+..--+|-.+.+.+++.|..++..|-+..
T Consensus 16 ELE~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll~~~~~l~~~~ 70 (214)
T PF07795_consen 16 ELEATKMEANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLLLEKLSLQQQQ 70 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 3677789999999999999999999999999999999999999997776665544
No 217
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=64.91 E-value=28 Score=28.09 Aligned_cols=29 Identities=14% Similarity=0.265 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 111 YLNELETRVKDLERKNSELDERLSTLQNE 139 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~~E 139 (168)
++..+|.++..|.+-...-..+...|...
T Consensus 37 EL~KvEeEI~TLrqvL~aKer~~~eLKrk 65 (162)
T PF04201_consen 37 ELAKVEEEIQTLRQVLAAKERHCAELKRK 65 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 35555666665555444444444444433
No 218
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=64.78 E-value=8.9 Score=24.40 Aligned_cols=21 Identities=43% Similarity=0.627 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 030957 127 SELDERLSTLQNENQMLRHIL 147 (168)
Q Consensus 127 ~~L~~~v~~L~~En~~Lr~~L 147 (168)
..|...+..|..||..||.++
T Consensus 24 ~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 24 QELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ------HHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHh
Confidence 334444444555555555443
No 219
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=64.72 E-value=22 Score=31.57 Aligned_cols=44 Identities=25% Similarity=0.388 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Q 030957 113 NELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTASRRG 156 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~~~ 156 (168)
.+...+...|..+...|+.++..++-+|..||..|........+
T Consensus 75 ~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~ 118 (319)
T PF09789_consen 75 SESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEG 118 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhcc
Confidence 33444555677777778888888888899999999887765443
No 220
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=64.53 E-value=53 Score=26.80 Aligned_cols=33 Identities=18% Similarity=0.427 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 106 ERKKAYLNELETRVKDLERKNSELDERLSTLQN 138 (168)
Q Consensus 106 ~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~ 138 (168)
++|++++.+-+.+..+++.+..+|+.+|...+.
T Consensus 142 ~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~~ 174 (176)
T PF12999_consen 142 KIRQELIEEAKKKREELEKKLEELEKEIQAAKQ 174 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345666766666666666666666555555444
No 221
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=64.43 E-value=11 Score=34.49 Aligned_cols=31 Identities=42% Similarity=0.520 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQM 142 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~ 142 (168)
+.+++.+.+.|+..|.+|..+|+.|+.++..
T Consensus 292 ~~E~~~rqk~le~~n~~L~~rieeLk~~~~~ 322 (411)
T KOG1318|consen 292 ARELENRQKKLESTNQELALRIEELKSEAGR 322 (411)
T ss_pred HHHHHhhhhHHHhHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555555544433
No 222
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=64.15 E-value=25 Score=32.77 Aligned_cols=41 Identities=20% Similarity=0.330 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
+..|+.+.++|+..++.|++.|..+..++-.||+++..+..
T Consensus 415 le~Lq~Q~eeL~e~~n~l~qrI~eer~~v~~lkql~~~~q~ 455 (514)
T KOG4370|consen 415 LELLQRQNEELEEKVNHLNQRIAEERERVIELKQLVNLLQE 455 (514)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666777788888888888888888888888887766553
No 223
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=63.89 E-value=97 Score=29.04 Aligned_cols=49 Identities=20% Similarity=0.253 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCC
Q 030957 110 AYLNELETRVKDLER----KNSELDERLSTLQNENQMLRHILKNTTASRRGGS 158 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~----eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~~~~~ 158 (168)
+.|+..+.+|.++.. +...|..+|..|...|..|.+.-.+|+..++|..
T Consensus 147 e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~ALkgd~ 199 (475)
T PRK10361 147 EQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAINLTRALKGDN 199 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 445555566666553 4567889999999999999998888888887753
No 224
>PLN02320 seryl-tRNA synthetase
Probab=63.75 E-value=17 Score=34.21 Aligned_cols=53 Identities=23% Similarity=0.216 Sum_probs=25.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 95 LRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHIL 147 (168)
Q Consensus 95 ~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L 147 (168)
++|.++.+-...+++...++|-.+++.|..+...|..++..++.+...|-..|
T Consensus 115 ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~i 167 (502)
T PLN02320 115 ERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSI 167 (502)
T ss_pred HHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44444444333222233445555555555555555555555555444443333
No 225
>smart00340 HALZ homeobox associated leucin zipper.
Probab=63.73 E-value=26 Score=22.37 Aligned_cols=20 Identities=20% Similarity=0.383 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030957 118 RVKDLERKNSELDERLSTLQ 137 (168)
Q Consensus 118 ~v~~Le~eN~~L~~~v~~L~ 137 (168)
=++.|..+|..|+.++++|+
T Consensus 13 cce~LteeNrRL~ke~~eLr 32 (44)
T smart00340 13 CCESLTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554443
No 226
>PRK14140 heat shock protein GrpE; Provisional
Probab=63.55 E-value=30 Score=28.43 Aligned_cols=6 Identities=50% Similarity=0.501 Sum_probs=2.1
Q ss_pred HHHHHH
Q 030957 115 LETRVK 120 (168)
Q Consensus 115 LE~~v~ 120 (168)
|..++.
T Consensus 56 lkd~~l 61 (191)
T PRK14140 56 LEERYL 61 (191)
T ss_pred HHHHHH
Confidence 333333
No 227
>PRK14162 heat shock protein GrpE; Provisional
Probab=63.46 E-value=30 Score=28.56 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 110 AYLNELETRVKDLERKNSELDERL 133 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v 133 (168)
+.+.+|..++..+..+...++.++
T Consensus 53 ~e~~elkd~~lR~~AEfeN~rkR~ 76 (194)
T PRK14162 53 AKNKDLEDKYLRSQAEIQNMQNRY 76 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555544433
No 228
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=63.44 E-value=80 Score=29.32 Aligned_cols=29 Identities=31% Similarity=0.357 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 108 KKAYLNELETRVKDLERKNSELDERLSTL 136 (168)
Q Consensus 108 Kk~~~~~LE~~v~~Le~eN~~L~~~v~~L 136 (168)
=++++..+|.++..|+.||.+|..+.-.+
T Consensus 46 i~a~~~~~E~~l~~Lq~e~~~l~e~~v~~ 74 (459)
T KOG0288|consen 46 IKAKLQEKELELNRLQEENTQLNEERVRE 74 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888876654443
No 229
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=63.22 E-value=33 Score=24.27 Aligned_cols=27 Identities=30% Similarity=0.538 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQN 138 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~ 138 (168)
++.|+.+...|+.+|..|+-++..|.+
T Consensus 44 l~~l~~~~~~l~~e~~~L~lE~~~l~~ 70 (97)
T PF04999_consen 44 LQQLEKEIDQLQEENERLRLEIATLSS 70 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 555555555555555555555555543
No 230
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=63.15 E-value=31 Score=27.20 Aligned_cols=35 Identities=31% Similarity=0.500 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 113 NELETRVKDLERKNSELDERLSTLQNENQMLRHIL 147 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L 147 (168)
++|+.....|+.....|-.++..|..+++.+-+..
T Consensus 104 ~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~ 138 (145)
T COG1730 104 EELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQ 138 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555566666666666666655554443
No 231
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=62.43 E-value=32 Score=27.11 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 030957 128 ELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 128 ~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
.|+++++.|..|+..|.+.+...
T Consensus 70 Kl~Rk~~kl~~el~~~~~~~~~~ 92 (161)
T PF04420_consen 70 KLNRKLDKLEEELEKLNKSLSSE 92 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777777777777777766543
No 232
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=62.32 E-value=72 Score=30.76 Aligned_cols=47 Identities=19% Similarity=0.298 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhcc
Q 030957 106 ERKKAYLNELETRVKDLERKNSELDER----------LSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 106 ~RKk~~~~~LE~~v~~Le~eN~~L~~~----------v~~L~~En~~Lr~~L~~~~~ 152 (168)
..+++.+.+||..+..+.........- |.....+|..|+++|.++..
T Consensus 118 ~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~ 174 (617)
T PF15070_consen 118 QEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQD 174 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHH
Confidence 456777777777777766654433322 33344677888888877653
No 233
>PRK09343 prefoldin subunit beta; Provisional
Probab=62.17 E-value=34 Score=25.79 Aligned_cols=35 Identities=29% Similarity=0.388 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 113 NELETRVKDLERKNSELDERLSTLQNENQMLRHIL 147 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L 147 (168)
+.++.++..|++....|+.++..++..+..|.+.+
T Consensus 81 E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~ 115 (121)
T PRK09343 81 ELLELRSRTLEKQEKKLREKLKELQAKINEMLSKY 115 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33447888888888888888888887666655544
No 234
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=61.91 E-value=27 Score=33.78 Aligned_cols=8 Identities=25% Similarity=0.256 Sum_probs=3.0
Q ss_pred HHHHHHHh
Q 030957 143 LRHILKNT 150 (168)
Q Consensus 143 Lr~~L~~~ 150 (168)
|+..|..+
T Consensus 500 L~~~l~~l 507 (652)
T COG2433 500 LERKLAEL 507 (652)
T ss_pred HHHHHHHH
Confidence 33333333
No 235
>PRK14154 heat shock protein GrpE; Provisional
Probab=61.74 E-value=29 Score=28.97 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDERLS 134 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~ 134 (168)
+.+|..++..|..+...++.++.
T Consensus 68 ~~elkd~~lRl~ADfeNyRKR~~ 90 (208)
T PRK14154 68 VDEYKTQYLRAQAEMDNLRKRIE 90 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 236
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=61.66 E-value=26 Score=31.34 Aligned_cols=43 Identities=23% Similarity=0.453 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
.+|++||.++..|+....++...+..+..++..|.+.|..+..
T Consensus 144 ~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEn 186 (370)
T PF02994_consen 144 SRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLEN 186 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 4677777777777777777777777777777777777776543
No 237
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=61.58 E-value=18 Score=24.45 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDERLS 134 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~ 134 (168)
+++|+.++..|+.|...++..+.
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~ 45 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIA 45 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555544444
No 238
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=61.49 E-value=29 Score=26.13 Aligned_cols=41 Identities=27% Similarity=0.403 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 111 YLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
++-+|+.-+.+|.+.....+++.-.|+.||+.|=|-|.++-
T Consensus 64 QVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLM 104 (120)
T KOG3650|consen 64 QVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLM 104 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Confidence 34566666666666666666666678888888888777764
No 239
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=61.46 E-value=39 Score=27.03 Aligned_cols=43 Identities=23% Similarity=0.353 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
..|+..|+.++..++.++..|+..|.....++......|..+.
T Consensus 78 ~~~r~~l~~~~~~~e~~~a~l~~~l~~~~~~ia~~~raIarn~ 120 (158)
T PF09486_consen 78 RRYRDVLEERVRAAEAELAALRQALRAAEDEIAATRRAIARND 120 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4577788888888888888888888887777777777666554
No 240
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=61.46 E-value=23 Score=32.00 Aligned_cols=35 Identities=29% Similarity=0.392 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 106 ERKKAYLNELETRVKDLERKNSELDERLSTLQNEN 140 (168)
Q Consensus 106 ~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En 140 (168)
.|-|..+..||.-+..|++||..|+.+++.|..|+
T Consensus 123 ~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~ 157 (401)
T PF06785_consen 123 MKTKGDIQHLEGLIRHLREENQCLQLQLDALQQEC 157 (401)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45566677778888888888888888877776654
No 241
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=61.42 E-value=71 Score=24.40 Aligned_cols=31 Identities=39% Similarity=0.554 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 106 ERKKAYLNELETRVKDLERKNSELDERLSTL 136 (168)
Q Consensus 106 ~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L 136 (168)
+|=+..+..++.++..++.....|..++..+
T Consensus 76 ~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~ 106 (151)
T PF11559_consen 76 ERLKEQLEELERELASAEEKERQLQKQLKSL 106 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444333333333333333
No 242
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=61.33 E-value=2.7 Score=31.46 Aligned_cols=38 Identities=29% Similarity=0.402 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 114 ELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 114 ~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
+|+...-.|-++...|...+..|+.|...|++.|.++.
T Consensus 3 ~Ld~~k~~laK~~~~LE~~l~~l~~el~~L~~~l~eLe 40 (118)
T PF08286_consen 3 ELDNEKFRLAKELSDLESELESLQSELEELKEELEELE 40 (118)
T ss_dssp --------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444443
No 243
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=61.27 E-value=29 Score=24.80 Aligned_cols=20 Identities=35% Similarity=0.529 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030957 128 ELDERLSTLQNENQMLRHIL 147 (168)
Q Consensus 128 ~L~~~v~~L~~En~~Lr~~L 147 (168)
.|+.++..+..++..++.++
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~ 100 (104)
T PF13600_consen 81 ALEDELAALQDEIQALEAQI 100 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444443
No 244
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=61.26 E-value=27 Score=24.03 Aligned_cols=18 Identities=33% Similarity=0.481 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 030957 132 RLSTLQNENQMLRHILKN 149 (168)
Q Consensus 132 ~v~~L~~En~~Lr~~L~~ 149 (168)
.+..|..|+..|++.|..
T Consensus 48 e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 48 ENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444555555554443
No 245
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=61.25 E-value=15 Score=26.06 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 118 RVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 118 ~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
....+..++..|+.++..|+.||..|+-.+..+.
T Consensus 36 ~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 36 QSRQLFYELQQLEKEIDQLQEENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555666777777777777777776666554
No 246
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=61.03 E-value=1.1e+02 Score=26.22 Aligned_cols=27 Identities=30% Similarity=0.439 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 121 DLERKNSELDERLSTLQNENQMLRHIL 147 (168)
Q Consensus 121 ~Le~eN~~L~~~v~~L~~En~~Lr~~L 147 (168)
.++.+...|+.++..++.+++.++.++
T Consensus 49 ~~~~e~e~le~qv~~~e~ei~~~r~r~ 75 (239)
T COG1579 49 ALEIELEDLENQVSQLESEIQEIRERI 75 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 247
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=61.01 E-value=65 Score=28.05 Aligned_cols=21 Identities=24% Similarity=0.435 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 030957 129 LDERLSTLQNENQMLRHILKN 149 (168)
Q Consensus 129 L~~~v~~L~~En~~Lr~~L~~ 149 (168)
|...|+.+..+...|...|.+
T Consensus 242 l~~~i~~~~~~k~~l~~eI~e 262 (325)
T PF08317_consen 242 LEEKIEELEEQKQELLAEIAE 262 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444443333
No 248
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=60.97 E-value=62 Score=25.76 Aligned_cols=31 Identities=19% Similarity=0.320 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 109 KAYLNELETRVKDLERKNSELDERLSTLQNE 139 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~E 139 (168)
++.+++|..++...+.+...|+.|.+.|..|
T Consensus 160 ~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 160 SEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445555555555555555555555555544
No 249
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=60.81 E-value=34 Score=29.48 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhcc
Q 030957 118 RVKDLERKNSELDERLSTLQNENQM----LRHILKNTTA 152 (168)
Q Consensus 118 ~v~~Le~eN~~L~~~v~~L~~En~~----Lr~~L~~~~~ 152 (168)
.+..|.+||.+|++++..|..+... |++...+|..
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~ 105 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRE 105 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777888888887776444433 4444444443
No 250
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=60.70 E-value=71 Score=32.84 Aligned_cols=48 Identities=25% Similarity=0.376 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 030957 106 ERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTAS 153 (168)
Q Consensus 106 ~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~ 153 (168)
+++....+.|+.++++|+.+...++.++..+..++..|...+.++.+.
T Consensus 811 ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~k 858 (1174)
T KOG0933|consen 811 EKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAK 858 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566666666666666666666666666666666665555443
No 251
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=60.54 E-value=30 Score=26.14 Aligned_cols=31 Identities=29% Similarity=0.405 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 120 KDLERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 120 ~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
..|.++|..|.++..-|+-++.-|.++|.+.
T Consensus 75 ~rlkkk~~~LeEENNlLklKievLLDMLtet 105 (108)
T cd07429 75 LRLKKKNQQLEEENNLLKLKIEVLLDMLAET 105 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443
No 252
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=60.52 E-value=58 Score=28.65 Aligned_cols=58 Identities=22% Similarity=0.311 Sum_probs=27.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 90 RLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHIL 147 (168)
Q Consensus 90 r~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L 147 (168)
++.-++.+-.--.+-|+-|+-+|+.||+-+..-......-+.++..|..||..|...+
T Consensus 19 KIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c 76 (307)
T PF10481_consen 19 KIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESC 76 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHH
Confidence 3344444444445555556666666665554443333333334444444444444333
No 253
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=60.10 E-value=36 Score=30.11 Aligned_cols=44 Identities=23% Similarity=0.306 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 107 RKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 107 RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
+|.+.....+.+|..|..+...|..++..+..||..|.++|...
T Consensus 224 ~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~s 267 (306)
T PF04849_consen 224 RKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQAS 267 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34444444444444455555555555555556666666666544
No 254
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=59.85 E-value=3 Score=35.42 Aligned_cols=34 Identities=26% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNENQML 143 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~L 143 (168)
-.|.+|..-|..|..+|..|+.++..|..||..|
T Consensus 129 T~I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 129 TKIADLRRLVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777788888888888888888888888888
No 255
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=59.84 E-value=44 Score=24.18 Aligned_cols=30 Identities=30% Similarity=0.520 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 119 VKDLERKNSELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 119 v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
+..|+.....|..++..+..+...+...|.
T Consensus 86 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~ 115 (120)
T PF02996_consen 86 IKELEEQLEKLEKELAELQAQIEQLEQTLQ 115 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444433
No 256
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=59.78 E-value=24 Score=33.55 Aligned_cols=46 Identities=22% Similarity=0.330 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Q 030957 111 YLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTASRRG 156 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~~~ 156 (168)
.+++|+.++..+..+...+..++..++.+...+...|..+....+.
T Consensus 210 ~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~ 255 (650)
T TIGR03185 210 EIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRS 255 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555555555555555554444
No 257
>PRK14148 heat shock protein GrpE; Provisional
Probab=59.73 E-value=39 Score=27.85 Aligned_cols=17 Identities=0% Similarity=0.149 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 030957 113 NELETRVKDLERKNSEL 129 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~L 129 (168)
.+|..++..+..+...+
T Consensus 57 ~elkd~~lR~~Ae~eN~ 73 (195)
T PRK14148 57 DQFKDEALRAKAEMENI 73 (195)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 258
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=59.52 E-value=62 Score=23.09 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 111 YLNELETRVKDLERKNSELDERLSTLQ 137 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~ 137 (168)
+|+....++..|..+|.-|...|..|.
T Consensus 38 Rve~Vk~E~~kL~~EN~~Lq~YI~nLm 64 (80)
T PF10224_consen 38 RVEEVKEENEKLESENEYLQQYIGNLM 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 259
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=59.46 E-value=37 Score=24.59 Aligned_cols=33 Identities=39% Similarity=0.587 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 111 YLNELETRVKDLERKNSELDERLSTLQNENQML 143 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~L 143 (168)
+++.|+.++..|+.....|..++..|+.++..|
T Consensus 71 ~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 71 RLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666666555544
No 260
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=59.40 E-value=84 Score=26.58 Aligned_cols=27 Identities=30% Similarity=0.465 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 122 LERKNSELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 122 Le~eN~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
+......|..++..|...|..|...|.
T Consensus 221 ~r~~~~~l~~el~~l~~~~~~Le~~l~ 247 (312)
T PF00038_consen 221 LRRQIQSLQAELESLRAKNASLERQLR 247 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHhhhhhhccccchhhhhhhHH
Confidence 333333334444444444444444443
No 261
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=59.28 E-value=27 Score=33.28 Aligned_cols=43 Identities=16% Similarity=0.137 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
.-+.+||..+..+=.+.+.|+...+.|...++.|+.+|.....
T Consensus 363 sI~kcLe~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~~ 405 (557)
T PF01763_consen 363 SINKCLEGQINNQFDTIEDLKEENQDLEKKLRELESELSRYRE 405 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566555555555555555555555555555555555444
No 262
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=59.27 E-value=8.6 Score=24.93 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 030957 110 AYLNELETRVKDLERKNSELD 130 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~ 130 (168)
.++.+||.+|..|.+.|..|-
T Consensus 18 vrv~eLEeEV~~LrKINrdLf 38 (48)
T PF14077_consen 18 VRVSELEEEVRTLRKINRDLF 38 (48)
T ss_pred eeHHHHHHHHHHHHHHhHHHH
Confidence 345666666666666666553
No 263
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=59.22 E-value=21 Score=24.00 Aligned_cols=28 Identities=18% Similarity=0.353 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 115 LETRVKDLERKNSELDERLSTLQNENQM 142 (168)
Q Consensus 115 LE~~v~~Le~eN~~L~~~v~~L~~En~~ 142 (168)
+|.++..||++..+.+.++...+.+...
T Consensus 30 iEqRLa~LE~rL~~ae~ra~~ae~~~~~ 57 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRAQAAEARAKQ 57 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556665555555555555555554443
No 264
>PRK14158 heat shock protein GrpE; Provisional
Probab=59.18 E-value=41 Score=27.73 Aligned_cols=25 Identities=8% Similarity=-0.073 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 109 KAYLNELETRVKDLERKNSELDERL 133 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~~~v 133 (168)
++.+.+|..++..+..+...++.++
T Consensus 53 e~e~~el~d~~lR~~AefeN~RkR~ 77 (194)
T PRK14158 53 EAEAAANWDKYLRERADLENYRKRV 77 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 265
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=59.10 E-value=75 Score=27.88 Aligned_cols=40 Identities=28% Similarity=0.342 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Q 030957 109 KAYLNELETRVKDLERKNSE----------LDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~----------L~~~v~~L~~En~~Lr~~L~ 148 (168)
--.+++++.++...-..|+- |-..|..|..|...|||.|.
T Consensus 132 i~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkdEardlrqela 181 (333)
T KOG1853|consen 132 IYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDEARDLRQELA 181 (333)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345555555443334443 44556677888888888774
No 266
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=59.05 E-value=76 Score=23.97 Aligned_cols=55 Identities=18% Similarity=0.270 Sum_probs=31.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 94 LLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 94 ~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
+.+-.+-..-++..=...-++|+..+..|..+|..+...+..|+.++..++..|.
T Consensus 21 Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le 75 (107)
T PF09304_consen 21 LERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLE 75 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444434444556666666666666666666666666666665554
No 267
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=59.01 E-value=21 Score=27.75 Aligned_cols=36 Identities=22% Similarity=0.382 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 111 YLNELETRVKDLERKNSELDERLSTLQNENQMLRHI 146 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~ 146 (168)
.++.|+.++..=..+...|+.++..+...|..|..+
T Consensus 95 ~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekr 130 (131)
T PF04859_consen 95 VVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKR 130 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 345566666666666666777777777766666543
No 268
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=58.97 E-value=37 Score=24.87 Aligned_cols=31 Identities=42% Similarity=0.540 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 113 NELETRVKDLERKNSELDERLSTLQNENQML 143 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~L~~~v~~L~~En~~L 143 (168)
+.|+..++.|++....|+.++..++...+.|
T Consensus 77 e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 77 ETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4447777777777777777777777665544
No 269
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=58.92 E-value=72 Score=23.66 Aligned_cols=10 Identities=10% Similarity=0.305 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 030957 129 LDERLSTLQN 138 (168)
Q Consensus 129 L~~~v~~L~~ 138 (168)
.+.+|+.|+.
T Consensus 88 ~~k~i~~le~ 97 (100)
T PF04568_consen 88 HRKEIDELEK 97 (100)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 270
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=58.78 E-value=13 Score=23.56 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 110 AYLNELETRVKDLERKNSELDERL 133 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v 133 (168)
..+.+||.++..|..||..|+.++
T Consensus 21 ~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 21 IKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ---------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHh
Confidence 456777777777777777777665
No 271
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=58.65 E-value=88 Score=24.57 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 102 QQARERKKAYLNELETRVKDLERKNSELD 130 (168)
Q Consensus 102 ~~sR~RKk~~~~~LE~~v~~Le~eN~~L~ 130 (168)
....+..++.+..++..++.+..+...|.
T Consensus 122 ~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 122 RELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555
No 272
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=58.58 E-value=24 Score=31.49 Aligned_cols=39 Identities=26% Similarity=0.261 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 030957 110 AYLNELETRVKDLERKNSELDERLST---LQNENQMLRHILK 148 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~---L~~En~~Lr~~L~ 148 (168)
.+.-.|..+.+.|..+|.+|+.++.. +..||..|+..+.
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~l~~~e~l~~En~~Lr~ll~ 98 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEERLKSYEEANQTPPLFSEILS 98 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34456666666677777766554444 3456665665543
No 273
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=58.54 E-value=28 Score=24.02 Aligned_cols=20 Identities=30% Similarity=0.408 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030957 124 RKNSELDERLSTLQNENQML 143 (168)
Q Consensus 124 ~eN~~L~~~v~~L~~En~~L 143 (168)
.+|..|+.+++.|..|+..+
T Consensus 47 ~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 47 EENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444443
No 274
>PRK14143 heat shock protein GrpE; Provisional
Probab=58.45 E-value=42 Score=28.51 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDER 132 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~ 132 (168)
+.+|..++..+..+...++++
T Consensus 83 ~~elkd~~lR~~AdfeN~RKR 103 (238)
T PRK14143 83 LEELNSQYMRIAADFDNFRKR 103 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 275
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=58.28 E-value=72 Score=24.11 Aligned_cols=40 Identities=15% Similarity=0.361 Sum_probs=18.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 88 NKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSE 128 (168)
Q Consensus 88 ~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~ 128 (168)
.++.+-+..+-.+++....=|.+ +..+...+..|..+...
T Consensus 45 ~~YE~El~~Ha~~~~~L~~lr~e-~~~~~~~~~~l~~~~~~ 84 (132)
T PF07926_consen 45 QKYERELVKHAEDIKELQQLREE-LQELQQEINELKAEAES 84 (132)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 34444455555554444433332 34455555555444443
No 276
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=58.21 E-value=52 Score=24.29 Aligned_cols=31 Identities=29% Similarity=0.446 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 117 TRVKDLERKNSELDERLSTLQNENQMLRHIL 147 (168)
Q Consensus 117 ~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L 147 (168)
.++..|+.....|...+..+..+...+.+.|
T Consensus 93 ~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l 123 (126)
T TIGR00293 93 KRIEELEKAIEKLQEALAELASRAQQLEQEA 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444555555454444
No 277
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=58.20 E-value=40 Score=22.89 Aligned_cols=40 Identities=30% Similarity=0.291 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcccc
Q 030957 115 LETRVKDLERKNSELDER----LSTLQNENQMLRHILKNTTASR 154 (168)
Q Consensus 115 LE~~v~~Le~eN~~L~~~----v~~L~~En~~Lr~~L~~~~~~~ 154 (168)
|+.+|..|++-..-|+.+ +..|..|+..|+..-.+++-.+
T Consensus 1 l~~qv~s~e~~i~FLq~eH~~tL~~LH~EIe~Lq~~~~dL~~kL 44 (60)
T PF14916_consen 1 LEQQVQSLEKSILFLQQEHAQTLKGLHAEIERLQKRNKDLTFKL 44 (60)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceee
Confidence 578889999988888776 4568899999999999987543
No 278
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=58.10 E-value=48 Score=26.13 Aligned_cols=47 Identities=15% Similarity=0.242 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTASRRG 156 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~~~ 156 (168)
..+++|...+..|..+...|..++..|..-...|+..+..+......
T Consensus 6 ~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~ 52 (145)
T COG1730 6 QELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGA 52 (145)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45778888888888888888888888887777777777666654333
No 279
>KOG1055 consensus GABA-B ion channel receptor subunit GABABR1 and related subunits, G-protein coupled receptor superfamily [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=57.96 E-value=3.4 Score=40.78 Aligned_cols=63 Identities=25% Similarity=0.370 Sum_probs=47.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 89 KRLKRLLRNRVSAQQARERKKAY----LNELET-RVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 89 kr~rR~~rNR~AA~~sR~RKk~~----~~~LE~-~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
.+++.+.+|=..+...+..+.-. +.+.++ +.+.|..||.+|+..|.+.++...+|+++|....
T Consensus 726 pKv~~l~t~p~~~se~q~n~~~~~ss~~~k~~eer~~~lk~EN~~l~~~i~ekee~i~e~~~~l~~~~ 793 (865)
T KOG1055|consen 726 PKLRHLITNPQWASEAQRNMKTGPSSSVNENEEERLRLLKKENRRLRKKIMEKEERLSELKHQLQPRP 793 (865)
T ss_pred hhheeeecCchhhhhhhhccccCcccccchhHHHHhhhhhcccHHHHHhcccchHHHHHHHHhccccc
Confidence 34555666666666655444443 555555 8888999999999999999999999999997655
No 280
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=57.83 E-value=25 Score=24.62 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDERLSTL 136 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L 136 (168)
+.+.+..+..|.++|-.|+-+|-.|
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fL 26 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFL 26 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4567777888888887776655543
No 281
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=57.82 E-value=45 Score=25.18 Aligned_cols=45 Identities=20% Similarity=0.265 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 108 KKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 108 Kk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
...++..|...+..|..+...|...+..|......++..+..+..
T Consensus 4 ~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~ 48 (140)
T PRK03947 4 SEQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEE 48 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456778888888888888888888888888777777776655543
No 282
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=57.64 E-value=31 Score=23.38 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030957 126 NSELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 126 N~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
-..+..+|.....+...|+..|.
T Consensus 56 r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 56 RNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34456666666777777766664
No 283
>PRK14139 heat shock protein GrpE; Provisional
Probab=57.52 E-value=42 Score=27.44 Aligned_cols=19 Identities=11% Similarity=0.188 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030957 113 NELETRVKDLERKNSELDE 131 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~L~~ 131 (168)
.+|..++..+..+...++.
T Consensus 49 ~elkd~~lR~~AefeN~rK 67 (185)
T PRK14139 49 AELQDSFLRAKAETENVRR 67 (185)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 284
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=57.39 E-value=33 Score=31.21 Aligned_cols=35 Identities=26% Similarity=0.326 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 113 NELETRVKDLERKNSELDERLSTLQNENQMLRHIL 147 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L 147 (168)
+.|-.++..|.++..+|..++..++.+...+-..|
T Consensus 69 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i 103 (425)
T PRK05431 69 EALIAEVKELKEEIKALEAELDELEAELEELLLRI 103 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444555555555555555555544444433333
No 285
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=57.35 E-value=1.2e+02 Score=27.03 Aligned_cols=60 Identities=27% Similarity=0.518 Sum_probs=40.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 89 KRLKRLLRNRVSAQQARERKKAY-LNELETRVKDLERKNSELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 89 kr~rR~~rNR~AA~~sR~RKk~~-~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
|++.++..-++..-..=.+.++| |..|..++..|+.+-..+...+..|..|...|...|.
T Consensus 113 rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE 173 (310)
T PF09755_consen 113 RKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLE 173 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHH
Confidence 45555555555555555555655 6888888888888777777777777777666665553
No 286
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.31 E-value=37 Score=29.16 Aligned_cols=18 Identities=17% Similarity=0.283 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 030957 135 TLQNENQMLRHILKNTTA 152 (168)
Q Consensus 135 ~L~~En~~Lr~~L~~~~~ 152 (168)
.|+++...|+-.+..+.+
T Consensus 93 ~ie~~l~~l~~~aG~v~V 110 (247)
T COG3879 93 ALEDRLEKLRMLAGSVPV 110 (247)
T ss_pred HHHHHHHHHHHHhccCCC
Confidence 344455555555554443
No 287
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=57.21 E-value=40 Score=31.42 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 030957 129 LDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 129 L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
|+.+++.|..||..||..+..+.
T Consensus 302 lqmr~qqleeentelRs~~arlk 324 (502)
T KOG0982|consen 302 LQMRDQQLEEENTELRSLIARLK 324 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555554443
No 288
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=57.05 E-value=38 Score=28.52 Aligned_cols=50 Identities=16% Similarity=0.235 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCC
Q 030957 109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTASRRGGS 158 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~~~~~ 158 (168)
+..++....+++.+++.+..|+.+.+.+..|...|...-..++..+-+++
T Consensus 164 ~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~~~ 213 (216)
T KOG1962|consen 164 ETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIESGG 213 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhccC
Confidence 33444444444455556667777777777777777766666665544433
No 289
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=57.01 E-value=85 Score=32.32 Aligned_cols=64 Identities=23% Similarity=0.312 Sum_probs=45.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 88 NKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 88 ~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
.+.++-++.||.=-...-+++-..++.+-.+.-.|++++..|..+++.|+..+..|.+++.++.
T Consensus 372 ~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~ele 435 (1195)
T KOG4643|consen 372 DRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELE 435 (1195)
T ss_pred HHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777776666677777777777777777777777777777777777777777766553
No 290
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=56.60 E-value=76 Score=23.21 Aligned_cols=39 Identities=23% Similarity=0.461 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 99 VSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQ 137 (168)
Q Consensus 99 ~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~ 137 (168)
....+-+..+...|..|...+..|..++..|...|..+.
T Consensus 70 ~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 70 EEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555555555544443
No 291
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=56.50 E-value=48 Score=25.61 Aligned_cols=37 Identities=27% Similarity=0.359 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 115 LETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 115 LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
-..++..|+.+|.....++.....|...|...|..+-
T Consensus 102 Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~i 138 (144)
T PF11221_consen 102 QLKRIKELEEENEEAEEELQEAVKEAEELLKQVQELI 138 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457778888888877777777777777776666543
No 292
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=56.40 E-value=1.1e+02 Score=24.97 Aligned_cols=21 Identities=10% Similarity=0.218 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 030957 130 DERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 130 ~~~v~~L~~En~~Lr~~L~~~ 150 (168)
+.....++.++..|+..|...
T Consensus 152 ~~~~~e~~~~l~~l~~ei~~~ 172 (176)
T PF12999_consen 152 KKKREELEKKLEELEKEIQAA 172 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555443
No 293
>PRK14151 heat shock protein GrpE; Provisional
Probab=56.32 E-value=38 Score=27.42 Aligned_cols=13 Identities=0% Similarity=-0.151 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHH
Q 030957 115 LETRVKDLERKNS 127 (168)
Q Consensus 115 LE~~v~~Le~eN~ 127 (168)
|..++..+..+..
T Consensus 39 l~d~~lR~~Ae~e 51 (176)
T PRK14151 39 AKDQSLRAAADLQ 51 (176)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 294
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=56.29 E-value=40 Score=27.98 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDERLST 135 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~ 135 (168)
|++|+.--..|..+|..|+..|..
T Consensus 10 v~dL~~~n~~L~~en~kL~~~ve~ 33 (193)
T PF14662_consen 10 VEDLQLNNQKLADENAKLQRSVET 33 (193)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHH
Confidence 444555555555555555544443
No 295
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=56.24 E-value=68 Score=28.12 Aligned_cols=61 Identities=21% Similarity=0.273 Sum_probs=39.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 90 RLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 90 r~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
++.....+-..++..=..++..+.+|+.++..|+.+......+...|+.+.......|...
T Consensus 222 ~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA 282 (344)
T PF12777_consen 222 KLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERA 282 (344)
T ss_dssp HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccH
Confidence 3334444444455555667777788888888887777777777777777666666655543
No 296
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=55.87 E-value=84 Score=23.46 Aligned_cols=47 Identities=21% Similarity=0.296 Sum_probs=24.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 94 LLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRH 145 (168)
Q Consensus 94 ~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~ 145 (168)
+-+||.+++.-++-...|...|.. +.++..|.+.++.|......+..
T Consensus 55 msQNRq~~~dr~ra~~D~~inl~a-----e~ei~~l~~~l~~l~~~~~~~~~ 101 (108)
T PF06210_consen 55 MSQNRQAARDRLRAELDYQINLKA-----EQEIERLHRKLDALREKLGELLE 101 (108)
T ss_pred HHhhHhHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHhHHHHH
Confidence 568998887655555555444433 23344555555555444443333
No 297
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=55.85 E-value=37 Score=33.80 Aligned_cols=37 Identities=27% Similarity=0.340 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 114 ELETRVKDLERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 114 ~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
+.....+.|...|.+|...|+.+..||..|+..+.+-
T Consensus 445 es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ek 481 (861)
T PF15254_consen 445 ESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEK 481 (861)
T ss_pred HHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445577889999999999999999999887553
No 298
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=55.79 E-value=55 Score=26.31 Aligned_cols=39 Identities=23% Similarity=0.376 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 113 NELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
.++..++..|..++..|..+|..+..++..++..|..+-
T Consensus 25 q~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 25 QENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666666666666665554
No 299
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=55.70 E-value=65 Score=25.13 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030957 123 ERKNSELDERLSTLQNENQMLRH 145 (168)
Q Consensus 123 e~eN~~L~~~v~~L~~En~~Lr~ 145 (168)
......-+.+|..|.+||..||.
T Consensus 74 ~~~l~~re~~i~rL~~ENe~lR~ 96 (135)
T TIGR03495 74 RALLAQREQRIERLKRENEDLRR 96 (135)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHH
Confidence 33333345677778888887775
No 300
>PLN02678 seryl-tRNA synthetase
Probab=55.52 E-value=51 Score=30.46 Aligned_cols=37 Identities=14% Similarity=0.167 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 111 YLNELETRVKDLERKNSELDERLSTLQNENQMLRHIL 147 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L 147 (168)
..++|-.++..|..+...|..++..|+.+...+-..|
T Consensus 72 ~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~i 108 (448)
T PLN02678 72 DATELIAETKELKKEITEKEAEVQEAKAALDAKLKTI 108 (448)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3344555555555555555555555555444443333
No 301
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.33 E-value=33 Score=29.67 Aligned_cols=35 Identities=29% Similarity=0.357 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHIL 147 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L 147 (168)
+.+|+.++..|+.+..+|+. +..|+.+++..+..+
T Consensus 58 ~~~l~~Ql~~l~g~i~~L~~-~~~~q~q~~~~~~~q 92 (262)
T COG1729 58 LTQLEQQLRQLQGKIEELRG-IQELQYQNNQNVERQ 92 (262)
T ss_pred cHHHHHHHHHHHhhHHHHHh-HHHHHHHHHHHHHHH
Confidence 56677777777777777776 666666653333333
No 302
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=55.15 E-value=51 Score=29.59 Aligned_cols=20 Identities=20% Similarity=0.451 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030957 129 LDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 129 L~~~v~~L~~En~~Lr~~L~ 148 (168)
|..+++.+.+++..+.+.+.
T Consensus 278 ~~~q~~~~~k~~~~~~~~~~ 297 (406)
T PF02388_consen 278 LEEQLASLEKRIEEAEELIA 297 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443
No 303
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=55.10 E-value=66 Score=29.02 Aligned_cols=37 Identities=14% Similarity=0.221 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRH 145 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~ 145 (168)
+..+..|+.+...|+.++..|+.++..|+.|+..|+.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 28 EKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3567889999999999999999999999999888865
No 304
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=54.97 E-value=79 Score=22.92 Aligned_cols=40 Identities=23% Similarity=0.298 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 030957 114 ELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTAS 153 (168)
Q Consensus 114 ~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~ 153 (168)
-+--++..+.++|..|.++.+.|..|...-..++++....
T Consensus 20 y~~~k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vr 59 (87)
T PF10883_consen 20 YLWWKVKKAKKQNAKLQKENEQLKTEKAVAETQVKNAKVR 59 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445777888888888888888888888888888777643
No 305
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=54.96 E-value=43 Score=23.88 Aligned_cols=32 Identities=25% Similarity=0.420 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 111 YLNELETRVKDLERKNSELDERLSTLQNENQM 142 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~ 142 (168)
.+..|+.+++.|+.+...+..++..+..+...
T Consensus 71 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~ 102 (104)
T PF13600_consen 71 ELKELEEELEALEDELAALQDEIQALEAQIAF 102 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555555555555443
No 306
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=54.89 E-value=63 Score=31.01 Aligned_cols=46 Identities=15% Similarity=0.300 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 107 RKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 107 RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
+=+.|+.+++.+...+++....|+.++..-+.|+..|+.....|..
T Consensus 277 K~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~ 322 (581)
T KOG0995|consen 277 KFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKK 322 (581)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777776666666666666555555555555555544443
No 307
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=54.88 E-value=36 Score=30.85 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHIL 147 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L 147 (168)
.+.|-.+++.|..+..+|..++..++.+...+-..|
T Consensus 71 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 106 (418)
T TIGR00414 71 IEEIKKELKELKEELTELSAALKALEAELQDKLLSI 106 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345555555555555555555555555544444433
No 308
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=54.85 E-value=53 Score=27.38 Aligned_cols=25 Identities=28% Similarity=0.553 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 122 LERKNSELDERLSTLQNENQMLRHI 146 (168)
Q Consensus 122 Le~eN~~L~~~v~~L~~En~~Lr~~ 146 (168)
|..+...|..+|..|..||..|+..
T Consensus 130 Lh~~ie~~~eEi~~lk~en~~L~el 154 (200)
T PF07412_consen 130 LHKEIEQKDEEIAKLKEENEELKEL 154 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555444443
No 309
>PHA03308 transcriptional regulator ICP4; Provisional
Probab=54.65 E-value=22 Score=35.55 Aligned_cols=17 Identities=24% Similarity=0.503 Sum_probs=11.7
Q ss_pred CCCCCCCCCCcHHHHHH
Q 030957 75 GQRKRGRSPADKENKRL 91 (168)
Q Consensus 75 ~~rkr~r~~~e~e~kr~ 91 (168)
++|||||.+.-.+.|..
T Consensus 1292 ~~KKRGRK~LPpe~Ka~ 1308 (1463)
T PHA03308 1292 GGKRRGRQRLPIRDRVY 1308 (1463)
T ss_pred CccccCCCCCChHHhhh
Confidence 36788887776666654
No 310
>PRK14127 cell division protein GpsB; Provisional
Probab=54.64 E-value=54 Score=24.68 Aligned_cols=32 Identities=13% Similarity=0.373 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQML 143 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~L 143 (168)
++.|..++..|+.+|..|+.++..++.....+
T Consensus 39 ye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~ 70 (109)
T PRK14127 39 YEAFQKEIEELQQENARLKAQVDELTKQVSVG 70 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 44455555555555555555555555544433
No 311
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=54.62 E-value=58 Score=26.86 Aligned_cols=47 Identities=26% Similarity=0.340 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 030957 108 KKAYLNELETRVKDLERK--NSELDERLSTLQNENQMLRHILKNTTASR 154 (168)
Q Consensus 108 Kk~~~~~LE~~v~~Le~e--N~~L~~~v~~L~~En~~Lr~~L~~~~~~~ 154 (168)
+++.....+.+++.|..- ..+|++.|..|..|+...+..|.++...+
T Consensus 98 l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~ 146 (201)
T KOG4603|consen 98 LQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGT 146 (201)
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445556667777777653 34688889999999999999998887643
No 312
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=54.10 E-value=1.2e+02 Score=24.62 Aligned_cols=30 Identities=23% Similarity=0.402 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 106 ERKKAYLNELETRVKDLERKNSELDERLST 135 (168)
Q Consensus 106 ~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~ 135 (168)
..-...+..|+.+...|+.+...|+..++.
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~ 152 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQ 152 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666665555554444333
No 313
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=54.03 E-value=1.7e+02 Score=27.22 Aligned_cols=51 Identities=27% Similarity=0.367 Sum_probs=36.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 94 LLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLR 144 (168)
Q Consensus 94 ~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr 144 (168)
..+|...|++--.|-.+...+|..++..|-.+..+|.++.+.|.++-..|.
T Consensus 128 a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 128 ARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777777776777777777777887777777777777777776666655
No 314
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=53.80 E-value=41 Score=30.07 Aligned_cols=32 Identities=22% Similarity=0.231 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 117 TRVKDLERKNSELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 117 ~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
..+..|..||.+|++++..|+.++..+.....
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~l~~~e~l~~ 88 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEERLKSYEEANQ 88 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678899999999999999888777654443
No 315
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=53.73 E-value=25 Score=33.44 Aligned_cols=44 Identities=27% Similarity=0.396 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
+..+..|+..+..|..+|++|..-+..|..+|..|+..+.-+..
T Consensus 422 ~~e~s~l~~~~vt~~~q~~el~~~v~~l~~~n~~l~s~~~~~r~ 465 (669)
T KOG0818|consen 422 KSELSDLRKQAVTLTKQVQELTEVVHALQASNAKLQSLMKVNRE 465 (669)
T ss_pred hhhhhhHhhcchhhHHHHHHHHHHHHHHHhhhHHHHHHHhhccc
Confidence 56678999999999999999999999999999999999876653
No 316
>PRK14160 heat shock protein GrpE; Provisional
Probab=53.72 E-value=61 Score=27.09 Aligned_cols=32 Identities=31% Similarity=0.360 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 113 NELETRVKDLERKNSELDERLSTLQNENQMLR 144 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr 144 (168)
..|+.++..|+.+...|+.++..+..+...+|
T Consensus 64 ~~l~~~l~~l~~e~~elkd~~lR~~AefeN~R 95 (211)
T PRK14160 64 NKLKEENKKLENELEALKDRLLRTVAEYDNYR 95 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433333
No 317
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=53.52 E-value=43 Score=29.75 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 128 ELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 128 ~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
-|.-+|..|+++|..|-+.|+.|..
T Consensus 316 CLENRVAVLENQNKaLIEELKtLKe 340 (348)
T KOG3584|consen 316 CLENRVAVLENQNKALIEELKTLKE 340 (348)
T ss_pred HHHhHHHHHhcccHHHHHHHHHHHH
Confidence 4777888888888888888877654
No 318
>PRK09039 hypothetical protein; Validated
Probab=53.43 E-value=1.3e+02 Score=26.55 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030957 115 LETRVKDLERKNSELDERLSTL 136 (168)
Q Consensus 115 LE~~v~~Le~eN~~L~~~v~~L 136 (168)
|+..+..++.+...++.+|+.|
T Consensus 156 le~~L~~ae~~~~~~~~~i~~L 177 (343)
T PRK09039 156 LEAALDASEKRDRESQAKIADL 177 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 319
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=53.35 E-value=42 Score=25.71 Aligned_cols=17 Identities=35% Similarity=0.698 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 030957 117 TRVKDLERKNSELDERL 133 (168)
Q Consensus 117 ~~v~~Le~eN~~L~~~v 133 (168)
.+++.|+.+..+|..++
T Consensus 112 ~~l~~L~~~i~~L~~~~ 128 (134)
T PF07047_consen 112 ERLEELEERIEELEEQV 128 (134)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 320
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=53.20 E-value=38 Score=34.67 Aligned_cols=36 Identities=31% Similarity=0.444 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Q 030957 108 KKAYLNELETRVKDLERKNSELDERLSTLQN--ENQML 143 (168)
Q Consensus 108 Kk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~--En~~L 143 (168)
...+++.|+..+-.|+.+|+.|..+|..|.. +|.++
T Consensus 528 ~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~ 565 (1195)
T KOG4643|consen 528 LSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGAL 565 (1195)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3455666777777778888888888887766 54443
No 321
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=53.11 E-value=82 Score=22.53 Aligned_cols=35 Identities=26% Similarity=0.573 Sum_probs=25.1
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 100 SAQQARERKK----AYLNELETRVKDLERKNSELDERLS 134 (168)
Q Consensus 100 AA~~sR~RKk----~~~~~LE~~v~~Le~eN~~L~~~v~ 134 (168)
|-.+-|.||. ..+..|..++..|..+|..|+.++.
T Consensus 61 aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 61 ALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445555554 4667788888888888888887764
No 322
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=53.00 E-value=37 Score=25.93 Aligned_cols=30 Identities=40% Similarity=0.443 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 102 QQARERKKAYLNELETRVKDLERKNSELDE 131 (168)
Q Consensus 102 ~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~ 131 (168)
+.-=+-=|+.|.+|+.++..|+.||.-|+.
T Consensus 66 REEVe~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 66 REEVEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344555666666666666666666654
No 323
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=52.82 E-value=79 Score=25.64 Aligned_cols=45 Identities=22% Similarity=0.396 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 030957 105 RERKKAYLNELETRVKDLERKNSELD----ERLSTLQNENQMLRHILKN 149 (168)
Q Consensus 105 R~RKk~~~~~LE~~v~~Le~eN~~L~----~~v~~L~~En~~Lr~~L~~ 149 (168)
|...-+.+.+|+.++..|..+...+. ..|..+..++..++..+..
T Consensus 105 R~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~anr 153 (188)
T PF03962_consen 105 REELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKEAANR 153 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555444444332 2344444444444444433
No 324
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=52.70 E-value=64 Score=27.19 Aligned_cols=39 Identities=21% Similarity=0.325 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 114 ELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 114 ~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
.||.-+..++.+....+..+..|..|...|++.+-.+..
T Consensus 64 ~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~ 102 (230)
T PF10146_consen 64 TLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRK 102 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555566666666666666666655543
No 325
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=52.70 E-value=5.3 Score=29.54 Aligned_cols=39 Identities=26% Similarity=0.388 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
..+..|..++..|..++..|..++..+......|+..|.
T Consensus 32 ~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~ 70 (131)
T PF05103_consen 32 EELERLQRENAELKEEIEELQAQLEELREEEESLQRALI 70 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCT----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhh
Confidence 345666677777777777777777777666666666653
No 326
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=52.63 E-value=59 Score=25.34 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=10.0
Q ss_pred hHHHHHHHH-HHHHHHHHHHHHHH
Q 030957 97 NRVSAQQAR-ERKKAYLNELETRV 119 (168)
Q Consensus 97 NR~AA~~sR-~RKk~~~~~LE~~v 119 (168)
+|+.+.+.- .-+|..++.|+.-.
T Consensus 30 ~R~~~lk~dik~~k~~~enledA~ 53 (131)
T KOG1760|consen 30 SRKDDLKADIKEAKTEIENLEDAS 53 (131)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444332 33444455554433
No 327
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=52.56 E-value=90 Score=26.16 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 104 ARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 104 sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
-=+|--+||..|..+...-+.+...|+.++..|+--...+.++++....
T Consensus 106 ILqksidyi~~L~~~k~kqe~e~s~L~k~vtAL~iIk~~YEqM~~~~qd 154 (229)
T KOG1319|consen 106 ILQKTIDYIQFLHKEKKKQEEEVSTLRKDVTALKIIKVNYEQMVKAHQD 154 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3455667777777777777888888888888888777777787776655
No 328
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=52.49 E-value=55 Score=31.22 Aligned_cols=36 Identities=31% Similarity=0.382 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 104 ARERKKAYLNELETRVKDLERKNSELDERLSTLQNE 139 (168)
Q Consensus 104 sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~E 139 (168)
+|.|-|+.|.+|-.++..+-.....|..+...|..+
T Consensus 36 sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~d 71 (546)
T KOG0977|consen 36 SREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHD 71 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777766554433333333333333333
No 329
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=52.40 E-value=42 Score=24.36 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 121 DLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 121 ~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
.+......|...+..|+.+|..|.+.|....
T Consensus 77 ~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 77 YKKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455667788888889999999888887654
No 330
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=52.25 E-value=53 Score=23.89 Aligned_cols=32 Identities=34% Similarity=0.586 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQML 143 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~L 143 (168)
++.|+.++..|++....+..++..|..+.+.+
T Consensus 96 ~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 96 LETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566677777777777777777777665543
No 331
>PRK14155 heat shock protein GrpE; Provisional
Probab=52.13 E-value=43 Score=27.89 Aligned_cols=20 Identities=5% Similarity=0.117 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDE 131 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~ 131 (168)
+.+|..++..+..+...++.
T Consensus 29 ~~elkd~~lR~~AefeN~RK 48 (208)
T PRK14155 29 VAALKDQALRYAAEAENTKR 48 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333
No 332
>PRK14011 prefoldin subunit alpha; Provisional
Probab=51.85 E-value=64 Score=25.28 Aligned_cols=39 Identities=18% Similarity=0.254 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 98 RVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNE 139 (168)
Q Consensus 98 R~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~E 139 (168)
..-|..+=+||.++ |+.....|.....++...+..|..+
T Consensus 86 ~~eA~~~~~~ri~~---l~~~~~~l~~~i~~~~~~~~~l~~~ 124 (144)
T PRK14011 86 VSEVIEDFKKSVEE---LDKTKKEGNKKIEELNKEITKLRKE 124 (144)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444443 3444444445555555555555544
No 333
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=51.79 E-value=79 Score=24.51 Aligned_cols=43 Identities=19% Similarity=0.189 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 108 KKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 108 Kk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
|.+-|..|..+...|..-+..+++-.+.=++.+..|+.+|...
T Consensus 83 KdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~~~ 125 (126)
T PF13118_consen 83 KDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLKIM 125 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4444555555555555555555555555566778888888654
No 334
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=51.76 E-value=1.8e+02 Score=27.35 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 030957 130 DERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 130 ~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
++.+..+..+++.|..||..+-
T Consensus 427 ~~~~~s~d~~I~dLqEQlrDlm 448 (493)
T KOG0804|consen 427 KEALGSKDEKITDLQEQLRDLM 448 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhHh
Confidence 3344444555666666665543
No 335
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=51.69 E-value=24 Score=25.70 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 127 SELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 127 ~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
-.|-.+|+.|+.|+..|+.+|..+.
T Consensus 74 l~LLd~i~~Lr~el~~L~~~l~~~~ 98 (101)
T PRK10265 74 LTLLDEIAHLKQENRLLRQRLSRFV 98 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3577777888888888888776553
No 336
>PRK01203 prefoldin subunit alpha; Provisional
Probab=51.60 E-value=77 Score=24.58 Aligned_cols=40 Identities=13% Similarity=0.262 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 113 NELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
.+|+.++..|+.+...|..++..|+.....+...+..+..
T Consensus 3 ~~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~ 42 (130)
T PRK01203 3 RDVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSD 42 (130)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4677788888888888888888888877777777776655
No 337
>PRK14147 heat shock protein GrpE; Provisional
Probab=51.37 E-value=51 Score=26.52 Aligned_cols=15 Identities=0% Similarity=-0.135 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 030957 114 ELETRVKDLERKNSE 128 (168)
Q Consensus 114 ~LE~~v~~Le~eN~~ 128 (168)
+|..++..+..+...
T Consensus 36 elkd~~lR~~Ad~eN 50 (172)
T PRK14147 36 LVKADALRERADLEN 50 (172)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 338
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=51.36 E-value=92 Score=23.01 Aligned_cols=24 Identities=25% Similarity=0.603 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 114 ELETRVKDLERKNSELDERLSTLQ 137 (168)
Q Consensus 114 ~LE~~v~~Le~eN~~L~~~v~~L~ 137 (168)
.|+..+..|+.....|..++..+.
T Consensus 98 ~l~~~~~~l~~~l~~l~~~~~~~~ 121 (129)
T cd00584 98 ELTKQIEKLQKELAKLKDQINTLE 121 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 339
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=51.17 E-value=50 Score=29.43 Aligned_cols=36 Identities=31% Similarity=0.556 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRH 145 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~ 145 (168)
..++.|+.+...|..+...++.++..|..++.+|..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (389)
T PRK03992 15 EQIRQLELKLRDLEAENEKLERELERLKSELEKLKS 50 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 456777777777777777888888888888777663
No 340
>PRK14163 heat shock protein GrpE; Provisional
Probab=51.03 E-value=56 Score=27.41 Aligned_cols=19 Identities=11% Similarity=0.197 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030957 113 NELETRVKDLERKNSELDE 131 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~L~~ 131 (168)
.+|..++..|..+..+++.
T Consensus 57 ~el~d~~lR~~AEfeN~rk 75 (214)
T PRK14163 57 GERTADLQRLQAEYQNYRR 75 (214)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 341
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=50.89 E-value=70 Score=25.85 Aligned_cols=29 Identities=24% Similarity=0.401 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 119 VKDLERKNSELDERLSTLQNENQMLRHIL 147 (168)
Q Consensus 119 v~~Le~eN~~L~~~v~~L~~En~~Lr~~L 147 (168)
+..|......|+.+|..++.+..+|+.+.
T Consensus 114 ~~~l~~~l~~l~~kl~e~k~k~~~l~ar~ 142 (221)
T PF04012_consen 114 VEKLKEQLEELEAKLEELKSKREELKARE 142 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444433
No 342
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=50.67 E-value=52 Score=30.54 Aligned_cols=38 Identities=29% Similarity=0.444 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 114 ELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 114 ~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
+|-.+.+.|..++.+|..++..|..+...|-..|+++.
T Consensus 180 ~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~ 217 (447)
T KOG2751|consen 180 DLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELE 217 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555666777777777777777777666666554
No 343
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=50.50 E-value=68 Score=26.02 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030957 127 SELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 127 ~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
....+.|..|..||..||.+|.
T Consensus 156 ~~~qe~i~qL~~EN~~LRelL~ 177 (181)
T PF05769_consen 156 QEEQEIIAQLETENKGLRELLQ 177 (181)
T ss_pred HhHHHHHHHHHHHHHHHHHHHh
Confidence 3567889999999999999985
No 344
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=50.47 E-value=1.9e+02 Score=26.71 Aligned_cols=45 Identities=27% Similarity=0.328 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 101 AQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRH 145 (168)
Q Consensus 101 A~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~ 145 (168)
.++.+.+=...|.+|+.++..++.+..+....+..+...+..+..
T Consensus 57 ~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~ 101 (420)
T COG4942 57 QQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNA 101 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHH
Confidence 344444445556666666666555444443333333333333333
No 345
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=50.43 E-value=1.6e+02 Score=30.46 Aligned_cols=53 Identities=19% Similarity=0.326 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 100 SAQQARERKKAYLNELETRV--------KDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 100 AA~~sR~RKk~~~~~LE~~v--------~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
+.+.+.++....|.+++.+. .+.+.+...|..+|+.|+.++..|+..+..+..
T Consensus 369 ~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~ 429 (1074)
T KOG0250|consen 369 KLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKE 429 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444454444444 223344445666666666666666666655543
No 346
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=50.38 E-value=79 Score=30.22 Aligned_cols=38 Identities=24% Similarity=0.411 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHI 146 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~ 146 (168)
..||++|-..++.|+.+|..|..++..++.|...++..
T Consensus 369 e~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~~~ 406 (557)
T PF01763_consen 369 EGQINNQFDTIEDLKEENQDLEKKLRELESELSRYREE 406 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57999999999999999999999999999998888876
No 347
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=50.24 E-value=73 Score=25.06 Aligned_cols=41 Identities=20% Similarity=0.376 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
.++..|+..+..+..+...|......+.+....|++-|...
T Consensus 47 ~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~ 87 (162)
T PF05565_consen 47 KVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDA 87 (162)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777788888888887777777777777776554
No 348
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=50.10 E-value=1e+02 Score=27.06 Aligned_cols=65 Identities=29% Similarity=0.307 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhH-----HHHHHHH-HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 86 KENKRLKRLLRNR-----VSAQQAR-ERKKAYLNELETRVKDLERKN-------SELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 86 ~e~kr~rR~~rNR-----~AA~~sR-~RKk~~~~~LE~~v~~Le~eN-------~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
-|+|..+-|.-|- -++-.|. +-=|..+.+||..+.+|..++ ..++..+..|..|...|+.+|.+.
T Consensus 89 vEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~r 166 (302)
T PF09738_consen 89 VEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQR 166 (302)
T ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677766676652 2333333 222455555665555555443 234555556666666666666543
No 349
>PHA00728 hypothetical protein
Probab=49.92 E-value=24 Score=27.54 Aligned_cols=22 Identities=36% Similarity=0.666 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030957 117 TRVKDLERKNSELDERLSTLQN 138 (168)
Q Consensus 117 ~~v~~Le~eN~~L~~~v~~L~~ 138 (168)
.++++|.++|.+|+.++..|+.
T Consensus 5 teveql~keneelkkkla~lea 26 (151)
T PHA00728 5 TEVEQLKKENEELKKKLAELEA 26 (151)
T ss_pred hHHHHHHHhHHHHHHHHHHHHH
Confidence 3677888888888887777654
No 350
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=49.82 E-value=1.2e+02 Score=25.86 Aligned_cols=42 Identities=29% Similarity=0.322 Sum_probs=20.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 90 RLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDE 131 (168)
Q Consensus 90 r~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~ 131 (168)
.++++.--..++.+.=.-++..+++|+.++..++.+...+++
T Consensus 32 ~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~ 73 (239)
T COG1579 32 ALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRE 73 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444445555566666666665555544433
No 351
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=49.79 E-value=91 Score=23.54 Aligned_cols=53 Identities=17% Similarity=0.243 Sum_probs=23.2
Q ss_pred HhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 96 RNRVSA-QQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 96 rNR~AA-~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
+|++|+ ..+.+-=|.-..+|-.+-+.|+.-+..|+.+...+..-+..|...|.
T Consensus 15 ~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ 68 (107)
T PF09304_consen 15 QNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKID 68 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 23344444444444444444444444444444444444444444443
No 352
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=49.74 E-value=69 Score=26.88 Aligned_cols=11 Identities=18% Similarity=0.646 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 030957 129 LDERLSTLQNE 139 (168)
Q Consensus 129 L~~~v~~L~~E 139 (168)
|..+|..|...
T Consensus 125 Le~Ki~e~~~~ 135 (225)
T COG1842 125 LEQKIAELRAK 135 (225)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 353
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=49.62 E-value=25 Score=31.26 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 123 ERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 123 e~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
..+..++.++|.+|++++..|+..|..+..
T Consensus 288 RsElDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 288 RSELDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456777778888888888888888877654
No 354
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=49.07 E-value=86 Score=25.32 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Q 030957 130 DERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 130 ~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
+.+++.+...++.|.+.|..+..
T Consensus 124 r~e~ee~~~~l~~le~~~~~~e~ 146 (175)
T PRK13182 124 RREMEEMLERLQKLEARLKKLEP 146 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666677777777766554
No 355
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=48.91 E-value=1.2e+02 Score=25.34 Aligned_cols=44 Identities=25% Similarity=0.262 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 107 RKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 107 RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
.|...++..+.++.....+..-|+.++..|..|+..||..+..+
T Consensus 63 ~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 63 TKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 45666777777777777788889999999999999999999887
No 356
>PRK14145 heat shock protein GrpE; Provisional
Probab=48.84 E-value=76 Score=26.23 Aligned_cols=21 Identities=10% Similarity=0.022 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 030957 111 YLNELETRVKDLERKNSELDE 131 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~ 131 (168)
.+.+|..++..+..+...++.
T Consensus 60 e~~el~d~~lR~~AEfeN~rk 80 (196)
T PRK14145 60 EAQEYLDIAQRLKAEFENYRK 80 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 357
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=48.63 E-value=83 Score=21.31 Aligned_cols=40 Identities=23% Similarity=0.362 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 111 YLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
.+..++.+++.++.....|......+......+..+|..+
T Consensus 7 ~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I 46 (71)
T PF10779_consen 7 KLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKI 46 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444433
No 358
>PF14282 FlxA: FlxA-like protein
Probab=48.51 E-value=1.1e+02 Score=22.52 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 030957 130 DERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 130 ~~~v~~L~~En~~Lr~~L~~~ 150 (168)
..++..|..++.+|..+|..+
T Consensus 50 ~~q~q~Lq~QI~~LqaQI~ql 70 (106)
T PF14282_consen 50 QQQIQLLQAQIQQLQAQIAQL 70 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555444
No 359
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=48.37 E-value=59 Score=28.15 Aligned_cols=75 Identities=24% Similarity=0.300 Sum_probs=36.7
Q ss_pred CCCCCCCCCCCCcHHHH-HHHHHHH--hHHHHHHHHHHHHHH-HHHHHHHHH-------HHHHHH-------HHHHHHHH
Q 030957 73 GEGQRKRGRSPADKENK-RLKRLLR--NRVSAQQARERKKAY-LNELETRVK-------DLERKN-------SELDERLS 134 (168)
Q Consensus 73 ~~~~rkr~r~~~e~e~k-r~rR~~r--NR~AA~~sR~RKk~~-~~~LE~~v~-------~Le~eN-------~~L~~~v~ 134 (168)
....|--.-+++||..+ +++-+.. |=-=-.+.|.-+-+| |.+|+.+.+ .|...| ++|..+++
T Consensus 56 rKr~RL~HLS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le 135 (292)
T KOG4005|consen 56 RKRRRLDHLSWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELE 135 (292)
T ss_pred HHHHhhcccCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34556677888888544 4443332 211223444434333 445554443 344444 45555555
Q ss_pred HHHHHHHHHHHHH
Q 030957 135 TLQNENQMLRHIL 147 (168)
Q Consensus 135 ~L~~En~~Lr~~L 147 (168)
.|..|...|+++.
T Consensus 136 ~~~~~l~~~~~~~ 148 (292)
T KOG4005|consen 136 LLRQELAELKQQQ 148 (292)
T ss_pred HHHHHHHhhHHHH
Confidence 5555555555543
No 360
>PRK14141 heat shock protein GrpE; Provisional
Probab=48.30 E-value=54 Score=27.35 Aligned_cols=11 Identities=27% Similarity=0.416 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 030957 115 LETRVKDLERK 125 (168)
Q Consensus 115 LE~~v~~Le~e 125 (168)
|..++..+..+
T Consensus 50 lkd~~lR~~Ae 60 (209)
T PRK14141 50 LKDRMLRLAAE 60 (209)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 361
>PRK04863 mukB cell division protein MukB; Provisional
Probab=48.23 E-value=1.7e+02 Score=31.32 Aligned_cols=23 Identities=13% Similarity=0.056 Sum_probs=14.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Q 030957 88 NKRLKRLLRNRVSAQQARERKKA 110 (168)
Q Consensus 88 ~kr~rR~~rNR~AA~~sR~RKk~ 110 (168)
..+++.+.+....|.++..-+.+
T Consensus 320 e~rL~kLEkQaEkA~kyleL~ee 342 (1486)
T PRK04863 320 NEAESDLEQDYQAASDHLNLVQT 342 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777655443
No 362
>COG3132 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.11 E-value=26 Score=29.05 Aligned_cols=22 Identities=50% Similarity=0.733 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030957 115 LETRVKDLERKNSELDERLSTL 136 (168)
Q Consensus 115 LE~~v~~Le~eN~~L~~~v~~L 136 (168)
||.+|+.|+.+..+|++.++.|
T Consensus 190 learv~aLe~eva~L~~rld~l 211 (215)
T COG3132 190 LEARVEALEQEVAELRARLDSL 211 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444433
No 363
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=48.05 E-value=1.5e+02 Score=24.16 Aligned_cols=44 Identities=25% Similarity=0.511 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 030957 106 ERKKAYLNELETRVKDLERKNSELD-------ERLSTLQNENQMLRHILKN 149 (168)
Q Consensus 106 ~RKk~~~~~LE~~v~~Le~eN~~L~-------~~v~~L~~En~~Lr~~L~~ 149 (168)
.+....|.+||.++-+|+.+...|. .+|..|+.+...|.+.+..
T Consensus 127 ~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~ 177 (190)
T PF05266_consen 127 KELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIEN 177 (190)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666665433333 2344444444444444443
No 364
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=47.95 E-value=61 Score=28.47 Aligned_cols=33 Identities=15% Similarity=0.236 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 030957 122 LERKNSELDERLSTLQNENQMLRHILKNTTASR 154 (168)
Q Consensus 122 Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~ 154 (168)
+......|+.++..|+.++....+.|......+
T Consensus 145 ~K~~~d~L~~e~~~Lre~L~~rdeli~khGlVl 177 (302)
T PF09738_consen 145 QKRAHDSLREELDELREQLKQRDELIEKHGLVL 177 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeee
Confidence 333444455555555555555555555554433
No 365
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=47.45 E-value=75 Score=24.68 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
+.++...+..++.-...|+.++..-..|+..||..|..+.
T Consensus 82 ~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~ 121 (131)
T PF04859_consen 82 IQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELN 121 (131)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555666666666666666666665543
No 366
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=47.41 E-value=20 Score=34.11 Aligned_cols=23 Identities=39% Similarity=0.423 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030957 124 RKNSELDERLSTLQNENQMLRHI 146 (168)
Q Consensus 124 ~eN~~L~~~v~~L~~En~~Lr~~ 146 (168)
.+|+-|.++|..|+.||+.||+.
T Consensus 650 ~eNe~l~aelk~lreenq~lr~~ 672 (673)
T KOG4378|consen 650 NENEMLKAELKFLREENQTLRCG 672 (673)
T ss_pred hhhHHHHHHHHHHHHhhhhhhcc
Confidence 46677778888888888887763
No 367
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.36 E-value=68 Score=22.58 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 115 LETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 115 LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
-|.-+.+|.....+.+..|+.++.....|-+.|..+..
T Consensus 20 QE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~ 57 (72)
T COG2900 20 QEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34445555555566666777777777777777766654
No 368
>PRK10698 phage shock protein PspA; Provisional
Probab=47.28 E-value=1.1e+02 Score=25.34 Aligned_cols=9 Identities=33% Similarity=0.615 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 030957 129 LDERLSTLQ 137 (168)
Q Consensus 129 L~~~v~~L~ 137 (168)
|+..|..+.
T Consensus 125 L~~ki~eak 133 (222)
T PRK10698 125 LENKLSETR 133 (222)
T ss_pred HHHHHHHHH
Confidence 333333333
No 369
>KOG3501 consensus Molecular chaperone Prefoldin, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=47.18 E-value=1.2e+02 Score=23.09 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 122 LERKNSELDERLSTLQNENQMLRHILKN 149 (168)
Q Consensus 122 Le~eN~~L~~~v~~L~~En~~Lr~~L~~ 149 (168)
|+.+...+++.|+.|+....+|...+.+
T Consensus 72 leak~k~see~IeaLqkkK~YlEk~v~e 99 (114)
T KOG3501|consen 72 LEAKMKSSEEKIEALQKKKTYLEKTVSE 99 (114)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555544443
No 370
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=47.18 E-value=90 Score=32.69 Aligned_cols=46 Identities=20% Similarity=0.317 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 106 ERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 106 ~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
..+...|.+|+.++..|..+...|..++..|......|.+.+..+.
T Consensus 738 ~~R~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~P 783 (1353)
T TIGR02680 738 RARLRRIAELDARLAAVDDELAELARELRALGARQRALADELAGAP 783 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3455668888888888888888888888888887777777766554
No 371
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=47.14 E-value=82 Score=27.30 Aligned_cols=45 Identities=13% Similarity=0.285 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTASR 154 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~ 154 (168)
..+..++..+..|..+...|..+|+....|....+.+|..+...+
T Consensus 176 ~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vR 220 (267)
T PF10234_consen 176 QQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVR 220 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 445555666666666666777777777777777777777666543
No 372
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=47.01 E-value=42 Score=22.63 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030957 127 SELDERLSTLQNENQMLRHILKN 149 (168)
Q Consensus 127 ~~L~~~v~~L~~En~~Lr~~L~~ 149 (168)
.+|..+|..|+.|+..|+..+..
T Consensus 24 ~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 24 EELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666665543
No 373
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=46.74 E-value=1.1e+02 Score=25.17 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 113 NELETRVKDLERKNSELDERLSTLQNENQML 143 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~L~~~v~~L~~En~~L 143 (168)
..|+..+..+......|+.+|..|+..+..+
T Consensus 102 ~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~ 132 (219)
T TIGR02977 102 EALERELAAVEETLAKLQEDIAKLQAKLAEA 132 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433333
No 374
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=46.62 E-value=52 Score=21.21 Aligned_cols=26 Identities=15% Similarity=0.456 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 110 AYLNELETRVKDLERKNSELDERLST 135 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~ 135 (168)
++.+..|.+++++..+..+|.++-..
T Consensus 12 e~~d~IEqkiedid~qIaeLe~KR~~ 37 (46)
T PF08946_consen 12 EHYDNIEQKIEDIDEQIAELEAKRQR 37 (46)
T ss_dssp ---THHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHhHHHHHHHHHHHHHHHHH
Confidence 34455666666665555555544333
No 375
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=46.55 E-value=51 Score=23.26 Aligned_cols=30 Identities=23% Similarity=0.343 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNE 139 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~E 139 (168)
..+.+|..+.+.|+.+...|..+|-.++.+
T Consensus 2 ~~L~~l~~~k~~Le~~L~~lE~qIy~~Et~ 31 (80)
T PF09340_consen 2 KELKELLQKKKKLEKDLAALEKQIYDKETS 31 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777788888888888887776654
No 376
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=46.47 E-value=1.9e+02 Score=27.12 Aligned_cols=28 Identities=29% Similarity=0.391 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 109 KAYLNELETRVKDLERKNSELDERLSTL 136 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L 136 (168)
--.++.|+.+++.|+.+|.+|+..+..|
T Consensus 296 sle~Enlqmr~qqleeentelRs~~arl 323 (502)
T KOG0982|consen 296 SLEKENLQMRDQQLEEENTELRSLIARL 323 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777888888888776655543
No 377
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=46.02 E-value=1.4e+02 Score=23.26 Aligned_cols=47 Identities=15% Similarity=0.123 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCC
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTASRRGGS 158 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~~~~~ 158 (168)
+.-+|..+-........|+.-+..+..+++.|++.+..+....++|+
T Consensus 92 ~~~~e~~i~~~~~~I~~Lq~~~~~~~~ki~~Le~~i~~~~~~Ck~pC 138 (146)
T PF08702_consen 92 IYILETKIINQPSNIRVLQNILRSNRQKIQRLEQDIDQQERYCKEPC 138 (146)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTB
T ss_pred HHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcc
Confidence 56666666777777778888888888899999998888877777765
No 378
>PRK14160 heat shock protein GrpE; Provisional
Probab=45.83 E-value=74 Score=26.59 Aligned_cols=17 Identities=12% Similarity=0.151 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 030957 113 NELETRVKDLERKNSEL 129 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~L 129 (168)
.+|..++..+..+...+
T Consensus 78 ~elkd~~lR~~AefeN~ 94 (211)
T PRK14160 78 EALKDRLLRTVAEYDNY 94 (211)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 379
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=45.80 E-value=40 Score=30.50 Aligned_cols=15 Identities=33% Similarity=0.330 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q 030957 108 KKAYLNELETRVKDL 122 (168)
Q Consensus 108 Kk~~~~~LE~~v~~L 122 (168)
=|+.+++|..+|..|
T Consensus 44 LKkEN~~Lk~eVerL 58 (420)
T PF07407_consen 44 LKKENNDLKIEVERL 58 (420)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445555555555
No 380
>PF11690 DUF3287: Protein of unknown function (DUF3287); InterPro: IPR021704 This eukaryotic family of proteins has no known function.
Probab=45.79 E-value=1.1e+02 Score=23.10 Aligned_cols=37 Identities=8% Similarity=0.266 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Q 030957 109 KAYLNELETRVKDLERKNSELDERLSTL--QNENQMLRH 145 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L--~~En~~Lr~ 145 (168)
...++.+..+-+.|..++..|..+++.| +.++.+|..
T Consensus 41 ~~F~~kV~~qH~~~~~e~r~L~kKi~~l~veRkmr~Les 79 (109)
T PF11690_consen 41 YDFIDKVVDQHQRYCDERRKLRKKIQDLRVERKMRALES 79 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4567777778888888888888888887 666666643
No 381
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=45.68 E-value=1.2e+02 Score=26.15 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 030957 99 VSAQQARERKKAYLNELETRV 119 (168)
Q Consensus 99 ~AA~~sR~RKk~~~~~LE~~v 119 (168)
..-.+|-.+-++.+++|+.++
T Consensus 189 ~~m~kei~~~re~i~el~e~I 209 (258)
T PF15397_consen 189 QVMQKEIVQFREEIDELEEEI 209 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 382
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=45.68 E-value=65 Score=23.28 Aligned_cols=33 Identities=30% Similarity=0.501 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLR 144 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr 144 (168)
++.|+.....|..+...+..++..+.....+|-
T Consensus 86 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 118 (120)
T PF02996_consen 86 IKELEEQLEKLEKELAELQAQIEQLEQTLQQLY 118 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666666777777777777777766665553
No 383
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=45.67 E-value=1.3e+02 Score=23.09 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhccccCCC
Q 030957 136 LQNENQMLRHILKNTTASRRGG 157 (168)
Q Consensus 136 L~~En~~Lr~~L~~~~~~~~~~ 157 (168)
|..|-..|+.+|..+...+..+
T Consensus 105 l~~eEe~L~~~le~l~~~l~~p 126 (141)
T PF13874_consen 105 LSPEEEELRKRLEALEAQLNAP 126 (141)
T ss_dssp ----------------------
T ss_pred CCHHHHHHHHHHHHHHHHHcCc
Confidence 3344455555555555544444
No 384
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=45.55 E-value=78 Score=27.54 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 127 SELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 127 ~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
..|+.++..++.|+.....+|.++
T Consensus 168 ~~LeqELvraEae~lvaEAqL~n~ 191 (271)
T PF13805_consen 168 VVLEQELVRAEAENLVAEAQLSNI 191 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHh
Confidence 345555555555555555555443
No 385
>PF04599 Pox_G5: Poxvirus G5 protein; InterPro: IPR007678 Protein G5 is found in a number of Poxviruses.
Probab=45.47 E-value=96 Score=28.72 Aligned_cols=50 Identities=24% Similarity=0.309 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 98 RVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHIL 147 (168)
Q Consensus 98 R~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L 147 (168)
|.|-+.+-.||+++++.|+.....|.-...-..+.-+.|+.++..|+.++
T Consensus 87 r~a~k~~~~RK~~~i~~l~~~~~~ld~~d~~yeEikt~~~lki~K~~F~~ 136 (425)
T PF04599_consen 87 RKALKNTIKRKREEIENLEDCIKNLDVDDEFYEEIKTDLELKIQKLSFQL 136 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888999999999999888775554444444455555555555444
No 386
>PRK06835 DNA replication protein DnaC; Validated
Probab=45.42 E-value=1.9e+02 Score=25.40 Aligned_cols=21 Identities=24% Similarity=0.218 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 030957 130 DERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 130 ~~~v~~L~~En~~Lr~~L~~~ 150 (168)
...+..|..++..|+.....+
T Consensus 64 ~~~~~~l~~~~~~l~~~~~~l 84 (329)
T PRK06835 64 EETLKELKEKITDLRVKKAEL 84 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666665544443
No 387
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=45.39 E-value=1e+02 Score=24.44 Aligned_cols=21 Identities=38% Similarity=0.408 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 030957 127 SELDERLSTLQNENQMLRHIL 147 (168)
Q Consensus 127 ~~L~~~v~~L~~En~~Lr~~L 147 (168)
..|+.+.+.|+.|+..|++.|
T Consensus 76 ~~lr~~~e~L~~eie~l~~~L 96 (177)
T PF07798_consen 76 AELRSENEKLQREIEKLRQEL 96 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555544444444
No 388
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=45.12 E-value=82 Score=29.33 Aligned_cols=13 Identities=23% Similarity=0.394 Sum_probs=6.1
Q ss_pred HHhccccCCCCCC
Q 030957 148 KNTTASRRGGSGG 160 (168)
Q Consensus 148 ~~~~~~~~~~~~~ 160 (168)
..+...+.|.|||
T Consensus 484 trLRtlltgdGgG 496 (593)
T KOG4807|consen 484 TRLRTLLTGDGGG 496 (593)
T ss_pred HHHHHHhccCCCC
Confidence 3444445555544
No 389
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=45.00 E-value=1.1e+02 Score=23.10 Aligned_cols=52 Identities=25% Similarity=0.302 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCC
Q 030957 107 RKKAYLNELETRVKDLER--KNSELDERLSTLQNENQMLRHILKNTTASRRGGS 158 (168)
Q Consensus 107 RKk~~~~~LE~~v~~Le~--eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~~~~~ 158 (168)
..+..+.+|+.++..+.. +...++.++..+..+...+-+.|.++.+.+++-.
T Consensus 24 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~Gv~vKd~~ 77 (120)
T PF09969_consen 24 ELKAELEELEERLQELEDSLEVNGLEAELEELEARLRELIDEIEELGVEVKDLD 77 (120)
T ss_pred HHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHHHHHHcCcEEeCCc
Confidence 344455555555555433 4556778888888888888888888888777764
No 390
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=44.97 E-value=1.5e+02 Score=24.66 Aligned_cols=38 Identities=32% Similarity=0.365 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHILKN 149 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~ 149 (168)
+..|...+...+-.+..|...|.+...||..|-.+...
T Consensus 163 ~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDe 200 (207)
T PF05010_consen 163 LLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDE 200 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444555555555555444433
No 391
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=44.82 E-value=67 Score=19.17 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 030957 130 DERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 130 ~~~v~~L~~En~~Lr~~L~~~ 150 (168)
..+.+.|+.....|+..|.++
T Consensus 7 ~sekeqLrrr~eqLK~kLeql 27 (32)
T PF02344_consen 7 ISEKEQLRRRREQLKHKLEQL 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444443
No 392
>PRK14157 heat shock protein GrpE; Provisional
Probab=44.77 E-value=68 Score=27.17 Aligned_cols=16 Identities=0% Similarity=-0.134 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 030957 115 LETRVKDLERKNSELD 130 (168)
Q Consensus 115 LE~~v~~Le~eN~~L~ 130 (168)
|..++..|..++..++
T Consensus 96 ~kd~llR~~AEfeNyR 111 (227)
T PRK14157 96 YLEALQRERAEFINYR 111 (227)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 393
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=44.65 E-value=74 Score=27.75 Aligned_cols=36 Identities=28% Similarity=0.466 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRH 145 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~ 145 (168)
..++.|+.+.+.+..+...++.++..++.++..|+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (364)
T TIGR01242 6 VRIRKLEDEKRSLEKEKIRLERELERLRSEIERLRS 41 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 457788888888888888888888888888766653
No 394
>PF05929 Phage_GPO: Phage capsid scaffolding protein (GPO) serine peptidase; InterPro: IPR009228 This entry is represented by Bacteriophage P2, GpO. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacteriophage capsid scaffolding protein (GpO) and some related bacterial sequences. GpO is thought to function in both the assembly of proheads and the cleavage of GpN [].; GO: 0019069 viral capsid assembly
Probab=44.43 E-value=1.7e+02 Score=25.50 Aligned_cols=29 Identities=28% Similarity=0.345 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 124 RKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 124 ~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
.....|..++..|..+...|+..|.....
T Consensus 228 ~~~~~l~~~~~~~~~~f~~L~~~L~~~~~ 256 (276)
T PF05929_consen 228 ELKQELKEQHEALTEDFAALKEKLSSTDA 256 (276)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHhhCCCC
Confidence 33455666778889999999999988776
No 395
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.29 E-value=2.1e+02 Score=29.01 Aligned_cols=48 Identities=21% Similarity=0.282 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 105 RERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 105 R~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
+..-.-.++.|...+..|+.+|.+|..++..+..+...|+.++..+..
T Consensus 666 I~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~ 713 (970)
T KOG0946|consen 666 IRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKN 713 (970)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444566677777778888888887777776666666666655554
No 396
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=44.26 E-value=1.1e+02 Score=27.19 Aligned_cols=48 Identities=29% Similarity=0.380 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 105 RERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 105 R~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
|++-.+.+++|+.+...|.++|...+..+..|......|..-..-+..
T Consensus 103 Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~ 150 (355)
T PF09766_consen 103 RKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQE 150 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 666777888888888888888888888888888777777666555543
No 397
>PRK14144 heat shock protein GrpE; Provisional
Probab=44.25 E-value=90 Score=25.88 Aligned_cols=19 Identities=5% Similarity=-0.135 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELD 130 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~ 130 (168)
+.+|..++..+..+..+++
T Consensus 61 ~~elkdk~lR~~AefeN~R 79 (199)
T PRK14144 61 AHENWEKSVRALAELENVR 79 (199)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 398
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=44.24 E-value=1.3e+02 Score=22.27 Aligned_cols=28 Identities=25% Similarity=0.529 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 113 NELETRVKDLERKNSELDERLSTLQNEN 140 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~L~~~v~~L~~En 140 (168)
..|+.+...|+.+..+|...+..|....
T Consensus 83 ~~l~~~~~~l~~~~~~l~~~~~~L~~~~ 110 (118)
T cd04776 83 EKIEKRRAELEQQRRDIDAALAELDAAE 110 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444333
No 399
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=44.20 E-value=15 Score=29.50 Aligned_cols=41 Identities=29% Similarity=0.437 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
+..|...+..|+.+...|+.++..|..||.-|+..+..+..
T Consensus 10 ~~~l~~~L~~l~~erqkl~~qv~rL~qEN~~Lr~el~~tq~ 50 (181)
T PF09311_consen 10 MRALQQHLQSLEAERQKLRAQVRRLCQENDWLRGELANTQQ 50 (181)
T ss_dssp HHHHHHHHHHHHHCCHHHHT---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666677777766666655544
No 400
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=44.05 E-value=1.1e+02 Score=30.54 Aligned_cols=34 Identities=15% Similarity=0.256 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 118 RVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 118 ~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
+++.+.+...+++..-+.|.+.+..||++|..+.
T Consensus 224 e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 224 ELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333333333444444455566667777766654
No 401
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=44.01 E-value=2.9e+02 Score=28.55 Aligned_cols=57 Identities=18% Similarity=0.288 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 030957 99 VSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTASRR 155 (168)
Q Consensus 99 ~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~~ 155 (168)
..|+.......+.+..++.+...+..+..+...++..+..+...|++++..+...+-
T Consensus 479 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~ 535 (1201)
T PF12128_consen 479 EQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLD 535 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 455666666677777888888888888888778888888888888888887776543
No 402
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=43.99 E-value=1.7e+02 Score=23.58 Aligned_cols=52 Identities=23% Similarity=0.307 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 100 SAQQARERKKAY---LNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 100 AA~~sR~RKk~~---~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
-|+.+=.+|..| +..|+..+..+......|+..|..|...+..|+.....+.
T Consensus 85 LAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ 139 (221)
T PF04012_consen 85 LAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELK 139 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444433 3344445555555555666666666666666666555554
No 403
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=43.99 E-value=92 Score=30.44 Aligned_cols=30 Identities=23% Similarity=0.413 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNE 139 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~E 139 (168)
..+.+||.+-++|..+..++...|++|+.+
T Consensus 93 ~EL~ele~krqel~seI~~~n~kiEelk~~ 122 (907)
T KOG2264|consen 93 LELTELEVKRQELNSEIEEINTKIEELKRL 122 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 445556666555555555555555554443
No 404
>PHA02109 hypothetical protein
Probab=43.95 E-value=74 Score=26.43 Aligned_cols=32 Identities=19% Similarity=0.387 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 108 KKAYLNELETRVKDLERKNSELDERLSTLQNE 139 (168)
Q Consensus 108 Kk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~E 139 (168)
|-++|.+|+.+++.|..|..+|+.+|..++.+
T Consensus 191 ~L~~I~~L~~ki~~LS~E~~Q~~~Ki~N~R~~ 222 (233)
T PHA02109 191 KLKQISELTIKLEALSDEACQVKHKILNLRAE 222 (233)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666655555544
No 405
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=43.84 E-value=2.6e+02 Score=26.23 Aligned_cols=38 Identities=18% Similarity=0.406 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHILKN 149 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~ 149 (168)
+..|+.+..++..+..+|+-+++.|...-..|+.+|..
T Consensus 455 ~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 455 REDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666777777777777777776654
No 406
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=43.81 E-value=98 Score=25.26 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030957 114 ELETRVKDLERKNSELDERLSTL 136 (168)
Q Consensus 114 ~LE~~v~~Le~eN~~L~~~v~~L 136 (168)
=.|.++..|.++|.+|+.+++.|
T Consensus 44 L~erQ~~~LR~~~~~L~~~l~~L 66 (225)
T PF04340_consen 44 LVERQLERLRERNRQLEEQLEEL 66 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 407
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=43.75 E-value=1.2e+02 Score=29.91 Aligned_cols=49 Identities=24% Similarity=0.457 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 101 AQQARERKKAYLNELETRVKDLER---------------------------KNSELDERLSTLQNENQMLRHILKN 149 (168)
Q Consensus 101 A~~sR~RKk~~~~~LE~~v~~Le~---------------------------eN~~L~~~v~~L~~En~~Lr~~L~~ 149 (168)
+.++|+.++..+..|++++..|.. +..+|+.++..+..-|+.|++.+..
T Consensus 550 t~~~~~~~k~~~e~LqaE~~~lk~~l~~le~~~~~~~d~~i~~~s~~~~~~ev~qlk~ev~s~ekr~~rlk~vF~~ 625 (716)
T KOG4593|consen 550 TSKARQIKKNRLEELQAELERLKERLTALEGDKMQFRDGEIAVHSLLAFSKEVAQLKKEVESAEKRNQRLKEVFAS 625 (716)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
No 408
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=43.61 E-value=72 Score=26.63 Aligned_cols=36 Identities=17% Similarity=0.378 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRH 145 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~ 145 (168)
++++.+...+..+..+|..|+.++..|..++.....
T Consensus 30 eFLD~V~~dye~~l~e~~~l~~~i~~L~~~l~~~~~ 65 (212)
T COG3599 30 EFLDDVIDDYEQLLDENEDLEDEIDELKEELKEAAD 65 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344555555555666666666666666655555444
No 409
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=43.41 E-value=1.2e+02 Score=21.75 Aligned_cols=60 Identities=20% Similarity=0.191 Sum_probs=39.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHh
Q 030957 91 LKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNS-------ELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 91 ~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~-------~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
+.++..........=..|...+..||.++..|+.+.. .+....+.|.+|+..|+.++..-
T Consensus 5 L~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks 71 (96)
T PF08647_consen 5 LVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKS 71 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 3445566666666667777777788887777766544 35556667777777777776543
No 410
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=43.33 E-value=1.3e+02 Score=21.97 Aligned_cols=35 Identities=26% Similarity=0.334 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 108 KKAYLNELETRVKDLERKNSELDERLSTLQNENQM 142 (168)
Q Consensus 108 Kk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~ 142 (168)
-.......+.++..|..++..|+..+..|...+..
T Consensus 72 e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~ 106 (126)
T PF13863_consen 72 EKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEE 106 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555555555554443
No 411
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=43.30 E-value=95 Score=24.44 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 030957 110 AYLNELETRVKDLERKNS 127 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~ 127 (168)
.-+++|..++..|+.+|.
T Consensus 51 ~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 51 KDNEELKKQIEELQAKNK 68 (155)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 445556666666666665
No 412
>KOG3819 consensus Uncharacterized conserved proteins (Hepatitis delta antigen-interacting protein A) [Function unknown]
Probab=43.14 E-value=1.8e+02 Score=27.39 Aligned_cols=43 Identities=21% Similarity=0.275 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCC
Q 030957 118 RVKDLERKNSELDERLSTLQNENQMLRHILKNTTASRRGGSGG 160 (168)
Q Consensus 118 ~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~~~~~~~ 160 (168)
+|.-...+..+|..+...|..||.+|++..--.-...+.+..|
T Consensus 140 eva~~~qKl~~LE~kqe~l~renlelkelc~~~~~e~~q~~~g 182 (513)
T KOG3819|consen 140 EVAGYQQKLYELENKQEELLRENLELKELCHSRLGEPPQPATG 182 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCCCCCCC
Confidence 4555666778889999999999999999987644434444433
No 413
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=43.03 E-value=58 Score=24.95 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030957 109 KAYLNELETRVKDLERKNSELD 130 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~ 130 (168)
.+.+++|+.++.+|+.++..++
T Consensus 111 ~~~l~~L~~~i~~L~~~~~~~~ 132 (134)
T PF07047_consen 111 QERLEELEERIEELEEQVEKQQ 132 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3556666666666666665554
No 414
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=42.99 E-value=87 Score=27.86 Aligned_cols=19 Identities=11% Similarity=0.349 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030957 121 DLERKNSELDERLSTLQNE 139 (168)
Q Consensus 121 ~Le~eN~~L~~~v~~L~~E 139 (168)
++-+...+|+++|..|.++
T Consensus 293 e~~krL~ELrR~vr~L~k~ 311 (320)
T TIGR01834 293 EAHQRIQQLRREVKSLKKR 311 (320)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 415
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=42.90 E-value=83 Score=25.86 Aligned_cols=30 Identities=23% Similarity=0.377 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNE 139 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~E 139 (168)
..++.|+.+++++++...+|..++...+.|
T Consensus 113 ~~~~~l~~~i~~~~~~~~~L~~~l~~~~~e 142 (181)
T KOG3335|consen 113 LKVEKLENAIAELTKFFSQLHSKLNKPESE 142 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 334444444444444444444444444333
No 416
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=42.61 E-value=3e+02 Score=27.04 Aligned_cols=45 Identities=22% Similarity=0.322 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 106 ERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 106 ~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
++....+.+|+.+.+.|......|.++++.+...-..|.+++..+
T Consensus 575 e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~v 619 (717)
T PF10168_consen 575 EQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRV 619 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666677777776666666666666655555555554444
No 417
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=42.38 E-value=2e+02 Score=24.50 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Q 030957 130 DERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 130 ~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
..+|+.|..-|+.|+.+|.-+.+
T Consensus 234 ~eei~fLk~tN~qLKaQLegI~a 256 (259)
T KOG4001|consen 234 KEEIEFLKETNRQLKAQLEGILA 256 (259)
T ss_pred HHHHHHHHHHHHHHHHHHhhccc
Confidence 44566677778888888876543
No 418
>PF07767 Nop53: Nop53 (60S ribosomal biogenesis); InterPro: IPR011687 This entry contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60) []. This protein has been found to interact with herpes simplex type 1 regulatory proteins, but its exact role in the life cycle of the virus is not known [].
Probab=42.21 E-value=1.5e+02 Score=26.38 Aligned_cols=17 Identities=29% Similarity=0.427 Sum_probs=6.8
Q ss_pred HHHhHHHHHHHHHHHHH
Q 030957 94 LLRNRVSAQQARERKKA 110 (168)
Q Consensus 94 ~~rNR~AA~~sR~RKk~ 110 (168)
.+|||+..++-.++...
T Consensus 281 ~qRnK~~r~k~~~~~~~ 297 (387)
T PF07767_consen 281 AQRNKEKRRKEEERKEK 297 (387)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444443333333
No 419
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=42.06 E-value=2e+02 Score=28.46 Aligned_cols=43 Identities=21% Similarity=0.409 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 106 ERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 106 ~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
.++...|..|+.+|..|.+.......-|..|+.+|..|+.++.
T Consensus 583 ~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~ 625 (786)
T PF05483_consen 583 LKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKIT 625 (786)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555566666666666553
No 420
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=42.03 E-value=2e+02 Score=23.74 Aligned_cols=40 Identities=23% Similarity=0.269 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 111 YLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
-+..|-.-+..+..+|..|+..+..|..|+..|...-..+
T Consensus 150 A~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~L 189 (206)
T PF14988_consen 150 AKKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQL 189 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666677888888888888877777776655444
No 421
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=41.77 E-value=1.3e+02 Score=21.53 Aligned_cols=33 Identities=36% Similarity=0.500 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 111 YLNELETRVKDLERKNSELDERLSTLQNENQML 143 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~L 143 (168)
..+.|-.++..|..+...|..++..+..+...|
T Consensus 68 ~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 68 DAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666666666666666655555444
No 422
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=41.76 E-value=2e+02 Score=23.77 Aligned_cols=37 Identities=24% Similarity=0.399 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 111 YLNELETRVKDLERKNSELDERLSTLQNENQMLRHIL 147 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L 147 (168)
.|..|..++...+.........|..|+.++..|...|
T Consensus 177 ~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL 213 (237)
T PF00261_consen 177 KIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDEL 213 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444433334444444444444444444
No 423
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=41.42 E-value=92 Score=23.66 Aligned_cols=9 Identities=33% Similarity=0.231 Sum_probs=4.0
Q ss_pred HHhHHHHHH
Q 030957 95 LRNRVSAQQ 103 (168)
Q Consensus 95 ~rNR~AA~~ 103 (168)
..|+.-|..
T Consensus 41 ~~n~~lAe~ 49 (150)
T PF07200_consen 41 AENEELAEQ 49 (150)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444443
No 424
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=41.22 E-value=1.5e+02 Score=26.06 Aligned_cols=43 Identities=23% Similarity=0.326 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 107 RKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKN 149 (168)
Q Consensus 107 RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~ 149 (168)
.....+..++.++..|+.+...|+.+++....+...|...+..
T Consensus 232 ~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~ 274 (344)
T PF12777_consen 232 EAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEE 274 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555555555555555555544443
No 425
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=41.22 E-value=1.5e+02 Score=23.45 Aligned_cols=16 Identities=31% Similarity=0.312 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 030957 106 ERKKAYLNELETRVKD 121 (168)
Q Consensus 106 ~RKk~~~~~LE~~v~~ 121 (168)
++|++|+.+|..+...
T Consensus 18 ~~K~~~LqEL~~Q~va 33 (142)
T PF08781_consen 18 KKKKEQLQELILQQVA 33 (142)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5566666666655443
No 426
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=41.02 E-value=1.1e+02 Score=27.28 Aligned_cols=39 Identities=31% Similarity=0.526 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
+.+|+.++.+++.+...++..+...+.-|.-|..+|...
T Consensus 184 ~~~l~~~l~~~~~eL~~~~k~L~faqekn~LlqslLdda 222 (323)
T PF08537_consen 184 IDELEERLNDLEKELEITKKDLKFAQEKNALLQSLLDDA 222 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345555555555555555555555566666666666543
No 427
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=41.01 E-value=1e+02 Score=28.49 Aligned_cols=35 Identities=17% Similarity=0.299 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 118 RVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 118 ~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
++..|..+...|..++..|+.++..|+.+|..+..
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 139 EIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33344444455666666666677777776666543
No 428
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=40.90 E-value=1.3e+02 Score=24.87 Aligned_cols=7 Identities=29% Similarity=0.458 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 030957 123 ERKNSEL 129 (168)
Q Consensus 123 e~eN~~L 129 (168)
+..+..|
T Consensus 203 e~~id~l 209 (237)
T PF00261_consen 203 EKEIDRL 209 (237)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 429
>PRK14153 heat shock protein GrpE; Provisional
Probab=40.89 E-value=74 Score=26.24 Aligned_cols=27 Identities=11% Similarity=0.202 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 108 KKAYLNELETRVKDLERKNSELDERLS 134 (168)
Q Consensus 108 Kk~~~~~LE~~v~~Le~eN~~L~~~v~ 134 (168)
.++.+.+|..++..+..+...++.+..
T Consensus 45 l~~e~~elkd~~lR~~AEfeN~rKR~~ 71 (194)
T PRK14153 45 CREEIESLKEQLFRLAAEFDNFRKRTA 71 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555444433
No 430
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=40.81 E-value=1.8e+02 Score=25.85 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 129 LDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 129 L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
.+.+...|..|+.+|++.|.++..
T Consensus 77 sre~Nk~L~~Ev~~Lrqkl~E~qG 100 (319)
T PF09789_consen 77 SREQNKKLKEEVEELRQKLNEAQG 100 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345556677777777777766553
No 431
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=40.72 E-value=1.4e+02 Score=23.76 Aligned_cols=43 Identities=16% Similarity=0.293 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
..++.|..++.++..+..+.-.+++.|.......|..|..+..
T Consensus 27 ~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~ 69 (159)
T PF05384_consen 27 QEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSR 69 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566666666666667777777777777777777766654
No 432
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=40.60 E-value=2.7e+02 Score=28.63 Aligned_cols=20 Identities=30% Similarity=0.401 Sum_probs=12.2
Q ss_pred HHHHHHHHHhHHHHHHHHHH
Q 030957 88 NKRLKRLLRNRVSAQQARER 107 (168)
Q Consensus 88 ~kr~rR~~rNR~AA~~sR~R 107 (168)
.++++++.+-+..|.+|...
T Consensus 199 ~~~l~~L~~q~~~a~~y~~l 218 (1163)
T COG1196 199 EKQLEKLERQAEKAERYQEL 218 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555666666677766643
No 433
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=40.43 E-value=1e+02 Score=22.62 Aligned_cols=37 Identities=14% Similarity=0.253 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 114 ELETRVKDLERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 114 ~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
.|......|..+...|..++..|......++..+..+
T Consensus 3 ql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L 39 (126)
T TIGR00293 3 QLAAELQILQQQVESLQAQIAALRALIAELETAIETL 39 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555444444444333
No 434
>PRK11239 hypothetical protein; Provisional
Probab=40.38 E-value=59 Score=27.40 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 030957 129 LDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 129 L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
|..+|..|+.|...|+.+|..+
T Consensus 188 Le~rv~~Le~eva~L~~~l~~l 209 (215)
T PRK11239 188 LQARVEALEIEVAELKQRLDSL 209 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555444444
No 435
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=40.13 E-value=1.4e+02 Score=24.21 Aligned_cols=42 Identities=31% Similarity=0.418 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhc
Q 030957 110 AYLNELETRVKDLERKNSELD---ERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~---~~v~~L~~En~~Lr~~L~~~~ 151 (168)
....+|+.+++.|+.+.+.|. .....|++.-..|...|..+.
T Consensus 120 ~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~ 164 (171)
T PF04799_consen 120 QTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQ 164 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666655543 344456666666666666654
No 436
>PHA03065 Hypothetical protein; Provisional
Probab=40.10 E-value=99 Score=28.70 Aligned_cols=55 Identities=22% Similarity=0.467 Sum_probs=33.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Q 030957 95 LRNRVSAQQARERKKAYLNELETRVKDL-------ERKNSELDERLSTLQ-----NENQMLRHILKN 149 (168)
Q Consensus 95 ~rNR~AA~~sR~RKk~~~~~LE~~v~~L-------e~eN~~L~~~v~~L~-----~En~~Lr~~L~~ 149 (168)
+|-|.|-+.+-.||++.++.|+.....| ++.-..|+.+|+.|. .++..|+..|..
T Consensus 86 eKRr~a~~~~~kRK~~ei~~l~~~i~~ld~~d~~yEEikt~~~lrI~Kl~F~~fLa~~~nlk~~l~~ 152 (438)
T PHA03065 86 EKRRKASKNTIKRKREEIEKLEDDIKNLDVDDEMYEEIKTDLELKIDKLSFQLFLANSNNLKRLLES 152 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHcchhhHHHHHHH
Confidence 4445566666699999999999998754 333444544554432 334455555554
No 437
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=40.09 E-value=2.6e+02 Score=30.88 Aligned_cols=36 Identities=28% Similarity=0.438 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHIL 147 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L 147 (168)
++++|.....|+.+...+..+|..|..++..|...+
T Consensus 945 ~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~ 980 (1930)
T KOG0161|consen 945 LEELELTLQKLELEKNAAENKLKNLEEEINSLDENI 980 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444443333
No 438
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=40.05 E-value=2.1e+02 Score=23.53 Aligned_cols=37 Identities=14% Similarity=0.158 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 115 LETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 115 LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
...++..|+..-..|...+-.++..+..|++.+..+.
T Consensus 173 ~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~ 209 (221)
T PF05700_consen 173 AGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLK 209 (221)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555566666666766666554
No 439
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=39.98 E-value=2.7e+02 Score=24.65 Aligned_cols=49 Identities=18% Similarity=0.233 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 104 ARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 104 sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
.|+|=--.+.-=|..|..|+..+...+.+|+.|..|+..|+..|.....
T Consensus 82 ~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~ 130 (307)
T PF10481_consen 82 TRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQ 130 (307)
T ss_pred HHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344445667778888888899999999999999999987664
No 440
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=39.97 E-value=61 Score=22.20 Aligned_cols=19 Identities=42% Similarity=0.562 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030957 129 LDERLSTLQNENQMLRHIL 147 (168)
Q Consensus 129 L~~~v~~L~~En~~Lr~~L 147 (168)
|.++|.-|+.|+..|+.+|
T Consensus 30 l~eRIalLq~EIeRlkAe~ 48 (65)
T COG5509 30 LEERIALLQAEIERLKAEL 48 (65)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444
No 441
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=39.80 E-value=2.1e+02 Score=23.40 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 111 YLNELETRVKDLERKNSELDERLSTLQNENQMLRHIL 147 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L 147 (168)
.+..+...|..|+.....|+.+|..+...-..|..++
T Consensus 107 ~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~ 143 (219)
T TIGR02977 107 ELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRH 143 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444333333
No 442
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=39.62 E-value=1.4e+02 Score=26.74 Aligned_cols=7 Identities=29% Similarity=0.520 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 030957 115 LETRVKD 121 (168)
Q Consensus 115 LE~~v~~ 121 (168)
|+..+..
T Consensus 156 L~~e~~~ 162 (342)
T PF06632_consen 156 LESEANK 162 (342)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 443
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=39.60 E-value=31 Score=32.37 Aligned_cols=22 Identities=18% Similarity=0.572 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030957 111 YLNELETRVKDLERKNSELDER 132 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~ 132 (168)
+|++|+.++++|+++...|..+
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~ 53 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDR 53 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccc
Confidence 3444444444444443333333
No 444
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=39.43 E-value=1.8e+02 Score=27.69 Aligned_cols=53 Identities=21% Similarity=0.419 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH--HHHHHHHHHHHHHHhc
Q 030957 99 VSAQQARERKKAYLNELETRVKDLERKNSE--LDERLST--LQNENQMLRHILKNTT 151 (168)
Q Consensus 99 ~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~--L~~~v~~--L~~En~~Lr~~L~~~~ 151 (168)
.+-..+|+-=.+++.+...++..|+.|..+ |..++.. |++|++.+.+..+++.
T Consensus 298 ~sstes~e~L~qqV~qs~EKIa~LEqEKEHw~LEaQL~kIKLEKEnkRiadLekeva 354 (518)
T PF10212_consen 298 LSSTESREGLAQQVQQSQEKIAKLEQEKEHWMLEAQLAKIKLEKENKRIADLEKEVA 354 (518)
T ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467889999999999999999999887776 5677764 6777888777666664
No 445
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=39.22 E-value=66 Score=27.22 Aligned_cols=20 Identities=25% Similarity=0.624 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030957 114 ELETRVKDLERKNSELDERL 133 (168)
Q Consensus 114 ~LE~~v~~Le~eN~~L~~~v 133 (168)
.|..++..|+.+...|+.++
T Consensus 22 ~Lk~kir~le~~l~~Lk~~l 41 (236)
T PF12017_consen 22 KLKKKIRRLEKELKKLKQKL 41 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444
No 446
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=39.18 E-value=4.4e+02 Score=26.97 Aligned_cols=111 Identities=14% Similarity=0.205 Sum_probs=0.0
Q ss_pred CchhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCcHHHHHHHH-HHHhHHHHHHHHHHHHHHHH
Q 030957 35 ESDEEIRRVPEIGGEPGGTSASGRELVSTGGPDRVQQLGEGQRKRGRSPADKENKRLKR-LLRNRVSAQQARERKKAYLN 113 (168)
Q Consensus 35 dsd~~i~~vPe~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~~rkr~r~~~e~e~kr~rR-~~rNR~AA~~sR~RKk~~~~ 113 (168)
++.++....|+....++.....-...--...+...+....-+ .+.+.-.....| ...++..--.--..-+.++.
T Consensus 287 ~se~~~~n~~~~s~~~pa~~~~~~~~~~~~~~~~~~~~~sqk-----d~~~~~~~~~~~e~~~~~~~l~~~~~ear~~~~ 361 (980)
T KOG0980|consen 287 VSEDEEMNLPDTSASTPAGHDPEPLDLFEAEPASDPPNASQK-----DPRELQIEQLSREVAQLKAQLENLKEEARRRIE 361 (980)
T ss_pred CCCccccccccccccccccCCCCCccccccCcccCCcccccC-----ChhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 114 ELETRVKDLERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 114 ~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
.++..+..|+.++++-+...+.-..|+..||+.|..+
T Consensus 362 q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql 398 (980)
T KOG0980|consen 362 QYENQLLALEGELQEQQREAQENREEQEQLRNELAQL 398 (980)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
No 447
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=39.16 E-value=28 Score=25.27 Aligned_cols=27 Identities=33% Similarity=0.415 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHh
Q 030957 124 RKNSELDERLSTLQN-----ENQMLRHILKNT 150 (168)
Q Consensus 124 ~eN~~L~~~v~~L~~-----En~~Lr~~L~~~ 150 (168)
-||..|+.++..|++ |-.+|-+.+..+
T Consensus 51 ~EN~rL~ee~rrl~~f~~~gerE~l~~eis~L 82 (86)
T PF12711_consen 51 MENIRLREELRRLQSFYVEGEREMLLQEISEL 82 (86)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 477777777766654 444555555444
No 448
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=39.04 E-value=1.6e+02 Score=26.18 Aligned_cols=49 Identities=18% Similarity=0.241 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 104 ARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 104 sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
++.-=.+.+++||..+.+-.+....|.++-..|......||..|+-++.
T Consensus 18 ~~~y~~~ki~~~~~~v~~kt~nlrrleaqrneln~kvr~lreel~~lqe 66 (404)
T KOG0728|consen 18 LRQYYLQKIEELQLQVAEKTQNLRRLEAQRNELNAKVRLLREELQLLQE 66 (404)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 3444455667777777776666666777777777777777777766654
No 449
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=38.92 E-value=1.1e+02 Score=22.51 Aligned_cols=37 Identities=16% Similarity=0.265 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 114 ELETRVKDLERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 114 ~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
.|......|..+...|..++..|......+...+..+
T Consensus 3 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l 39 (129)
T cd00584 3 QLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETL 39 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555444444443333
No 450
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=38.91 E-value=2.6e+02 Score=24.31 Aligned_cols=10 Identities=50% Similarity=0.627 Sum_probs=4.2
Q ss_pred CchhhhhcCC
Q 030957 35 ESDEEIRRVP 44 (168)
Q Consensus 35 dsd~~i~~vP 44 (168)
+.|+++..|+
T Consensus 73 ~~~~e~~Sv~ 82 (269)
T PF05278_consen 73 EGDEEMSSVI 82 (269)
T ss_pred ccchhhhhcc
Confidence 3344444443
No 451
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=38.80 E-value=79 Score=21.21 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 111 YLNELETRVKDLERKNSELDERLS 134 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~ 134 (168)
++..||.++...+++....+.++.
T Consensus 33 RLa~LE~rL~~ae~ra~~ae~~~~ 56 (60)
T PF11471_consen 33 RLAALEQRLQAAEQRAQAAEARAK 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 452
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=38.79 E-value=2e+02 Score=25.83 Aligned_cols=43 Identities=23% Similarity=0.493 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhcc
Q 030957 110 AYLNELETRVKDLERKNSELDE----------RLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~----------~v~~L~~En~~Lr~~L~~~~~ 152 (168)
+|++.|+.++..|+.+..+|.. ++..|..+...+...+.++..
T Consensus 242 ~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~ 294 (406)
T PF02388_consen 242 EYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEE 294 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666665555 456666666666666666654
No 453
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=38.77 E-value=49 Score=21.63 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 030957 113 NELETRVKDLERKNSE 128 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~ 128 (168)
..++.+++.+++++++
T Consensus 51 ~~~~k~l~~le~e~~~ 66 (68)
T PF06305_consen 51 RRLRKELKKLEKELEQ 66 (68)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3344444444444444
No 454
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=38.70 E-value=3e+02 Score=24.92 Aligned_cols=33 Identities=33% Similarity=0.513 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 118 RVKDLERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 118 ~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
.+..|......|..++..|..+...|...|...
T Consensus 376 ~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 376 QLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444555566667777777777777777777766
No 455
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=38.65 E-value=3.1e+02 Score=26.44 Aligned_cols=19 Identities=32% Similarity=0.602 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030957 113 NELETRVKDLERKNSELDE 131 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~L~~ 131 (168)
+.-|.+++.|..+|..|+.
T Consensus 304 e~kEeE~e~lq~~~d~Lk~ 322 (581)
T KOG0995|consen 304 EEKEEEIEKLQKENDELKK 322 (581)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444554443
No 456
>PRK10722 hypothetical protein; Provisional
Probab=38.48 E-value=1.4e+02 Score=25.80 Aligned_cols=53 Identities=21% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 030957 103 QARERKKAYLNELETRVKDL----ERKNSELDERLSTLQNENQMLRHILKNTTASRR 155 (168)
Q Consensus 103 ~sR~RKk~~~~~LE~~v~~L----e~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~~ 155 (168)
+.++--.-.+.+-..++..| ..+...|+++...|+.++..+...|.+++.+-|
T Consensus 151 r~~Q~l~l~LaeEr~Ry~rLQq~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnLTdIER 207 (247)
T PRK10722 151 RDGQALQLALAEERQRYQKLQQSSDSELDALRQQQQRLQYQLELTTRKLENLTDIER 207 (247)
T ss_pred HHhhHHHHhHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 457
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=38.44 E-value=3e+02 Score=25.08 Aligned_cols=58 Identities=19% Similarity=0.240 Sum_probs=33.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 95 LRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 95 ~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
..+|+.-..+.+|=++.-+.|+..-..|-++..+|...+.....++..|+.+|.....
T Consensus 313 ~~~~~~k~~~~~ki~~~e~~l~~~E~~l~~e~~~~n~~Le~~~~~l~~~e~~l~~~~~ 370 (373)
T COG5019 313 EEERELKKKFTEKIREKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEKRLEKLKS 370 (373)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3334444444444444444444444455556666777777777777777777765543
No 458
>PRK02224 chromosome segregation protein; Provisional
Probab=38.43 E-value=1.8e+02 Score=28.37 Aligned_cols=60 Identities=18% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 030957 95 LRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTASR 154 (168)
Q Consensus 95 ~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~ 154 (168)
...+++--.+..++.+.+.+++.++..++.+...|+..+..|......|+..|..+...+
T Consensus 577 ~~~~~~~l~~~~~~le~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i 636 (880)
T PRK02224 577 LNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERK 636 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 459
>COG5570 Uncharacterized small protein [Function unknown]
Probab=38.20 E-value=83 Score=21.00 Aligned_cols=42 Identities=29% Similarity=0.365 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhcc
Q 030957 111 YLNELETRVKDLERKNSEL-------DERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L-------~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
++.+|+.+-..|+.+.++- -..|..|..-...|+..+..+..
T Consensus 6 hl~eL~kkHg~le~ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEkLka 54 (57)
T COG5570 6 HLAELEKKHGNLEREIQEAMNSPSSDDLAIRELKRRKLRLKEEIEKLKA 54 (57)
T ss_pred HHHHHHHhhchHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhc
Confidence 5566666666666665542 12344555556666666665543
No 460
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=38.05 E-value=52 Score=28.15 Aligned_cols=12 Identities=17% Similarity=0.008 Sum_probs=7.4
Q ss_pred chhhhhcCCCCC
Q 030957 36 SDEEIRRVPEIG 47 (168)
Q Consensus 36 sd~~i~~vPe~~ 47 (168)
+-.||.||-+-+
T Consensus 55 SlADv~wva~de 66 (253)
T PF05308_consen 55 SLADVLWVANDE 66 (253)
T ss_pred chhhhcceeccc
Confidence 445777776544
No 461
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=38.04 E-value=1.1e+02 Score=19.57 Aligned_cols=36 Identities=25% Similarity=0.379 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 114 ELETRVKDLERKNSELDERLSTLQNENQMLRHILKN 149 (168)
Q Consensus 114 ~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~ 149 (168)
.|-..+.+|..-..+|+..+..-..|...||.-|.+
T Consensus 5 ~l~~ql~~l~~~l~elk~~l~~Q~kE~~~LRntI~e 40 (45)
T PF11598_consen 5 QLIKQLSELNQMLQELKELLRQQIKETRFLRNTIME 40 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777888888888888899999988765
No 462
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=38.03 E-value=1.9e+02 Score=23.06 Aligned_cols=47 Identities=21% Similarity=0.279 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 106 ERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 106 ~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
...+.|++.|+..+..|......|-.....|-.....|=..+..+..
T Consensus 27 ~~~~~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la~ 73 (236)
T PF09325_consen 27 EEIKDYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLAK 73 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34688999999999998888888877777777776666666665554
No 463
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=37.98 E-value=1.7e+02 Score=21.86 Aligned_cols=35 Identities=26% Similarity=0.400 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 116 ETRVKDLERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 116 E~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
+..+..++.|+..|.-....|...+..|-..|...
T Consensus 39 e~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 39 EQALRKLEQENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445556666666666667777777776666644
No 464
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=37.81 E-value=1.2e+02 Score=26.25 Aligned_cols=9 Identities=44% Similarity=0.663 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 030957 129 LDERLSTLQ 137 (168)
Q Consensus 129 L~~~v~~L~ 137 (168)
|..+|..|.
T Consensus 36 L~~~l~~l~ 44 (304)
T PF02646_consen 36 LKEQLKQLS 44 (304)
T ss_pred HHHHHHHHH
Confidence 444443333
No 465
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=37.65 E-value=1.4e+02 Score=28.63 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQ 137 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~ 137 (168)
++.|...+..+..+..+++.....|+
T Consensus 351 ~~~l~~~~~q~~~e~~~~~~~~~~le 376 (594)
T PF05667_consen 351 IKMLKSSLKQLEEELEEKEAENEELE 376 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 466
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=37.63 E-value=79 Score=22.22 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 114 ELETRVKDLERKNSELDERLSTLQN 138 (168)
Q Consensus 114 ~LE~~v~~Le~eN~~L~~~v~~L~~ 138 (168)
+.+.++.+|-..+..|+++|+.|+.
T Consensus 39 ~d~~~L~~L~~~a~rm~eRI~tLE~ 63 (75)
T TIGR02976 39 DDQALLQELYAKADRLEERIDTLER 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666553
No 467
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=37.62 E-value=2.7e+02 Score=24.05 Aligned_cols=33 Identities=24% Similarity=0.404 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 104 ARERKKAYLNELETRVKDLERKNSELDERLSTL 136 (168)
Q Consensus 104 sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L 136 (168)
.-++-...+..|+.++..|..+......+|..|
T Consensus 75 ~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L 107 (258)
T PF15397_consen 75 WEEKEESKLSKLQQQLEQLDAKIQKTQEELNFL 107 (258)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566677777777766666555444443
No 468
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=37.52 E-value=1.5e+02 Score=21.16 Aligned_cols=46 Identities=26% Similarity=0.429 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 106 ERKKAYLNELETRVKDLER-----KNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 106 ~RKk~~~~~LE~~v~~Le~-----eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
+|-++.+.+++.+++.|+. ||.+.-.-|..+.--...|-..|....
T Consensus 11 eK~k~Kiae~Q~rlK~Le~qk~E~EN~EIv~~VR~~~mtp~eL~~~L~~~~ 61 (83)
T PF14193_consen 11 EKTKEKIAELQARLKELEAQKTEAENLEIVQMVRSMKMTPEELAAFLRAMK 61 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3444555666666666644 566666666666655566666665543
No 469
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=37.37 E-value=3.6e+02 Score=27.47 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 030957 129 LDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 129 L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
+..++++|..|+..|...|+..
T Consensus 668 ~~~q~eel~Ke~kElq~rL~~q 689 (988)
T KOG2072|consen 668 KARQIEELEKERKELQSRLQYQ 689 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777776654
No 470
>PF08941 USP8_interact: USP8 interacting; InterPro: IPR015036 This protein interacts with the UBP deubiquitinating enzyme USP8. ; GO: 0016881 acid-amino acid ligase activity, 0031386 protein tag, 0016567 protein ubiquitination; PDB: 2FZP_A 2GWF_B 2OGB_A.
Probab=37.28 E-value=11 Score=30.82 Aligned_cols=42 Identities=17% Similarity=0.434 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 111 YLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
.|.....++.+|+++..+.+.++.....|...|+.-+..+..
T Consensus 5 lVq~Qq~~i~ELk~~~aeq~~ql~eqkREl~lLk~yirAlR~ 46 (179)
T PF08941_consen 5 LVQQQQTKIAELKKEQAEQQQQLSEQKRELELLKEYIRALRS 46 (179)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 456667788888888888888888888888888888776654
No 471
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=37.12 E-value=98 Score=29.44 Aligned_cols=36 Identities=28% Similarity=0.462 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 116 ETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 116 E~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
+..+..+.++...|.+++.+|++|...|++++..+.
T Consensus 92 ~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~ 127 (646)
T PRK05771 92 EEELEKIEKEIKELEEEISELENEIKELEQEIERLE 127 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444555555555555555555555555443
No 472
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=37.03 E-value=1.3e+02 Score=29.06 Aligned_cols=43 Identities=12% Similarity=0.251 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
++++..|-.+|..|..+...+..+|..|+..+..|+.++....
T Consensus 28 qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~ 70 (617)
T PF15070_consen 28 QQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPP 70 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 6778888888888888888888888899988888888887665
No 473
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=36.97 E-value=1.7e+02 Score=22.51 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 030957 127 SELDERLSTLQNENQM 142 (168)
Q Consensus 127 ~~L~~~v~~L~~En~~ 142 (168)
.+|+..+..+..++..
T Consensus 65 ~~Le~~~~~~~~e~~~ 80 (160)
T PF13094_consen 65 QELEKNAKALEREREE 80 (160)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444443333
No 474
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=36.94 E-value=31 Score=32.35 Aligned_cols=14 Identities=21% Similarity=0.510 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 030957 118 RVKDLERKNSELDE 131 (168)
Q Consensus 118 ~v~~Le~eN~~L~~ 131 (168)
++++|+++.++|++
T Consensus 32 kie~L~kql~~Lk~ 45 (489)
T PF11853_consen 32 KIEALKKQLEELKA 45 (489)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 475
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=36.93 E-value=2.9e+02 Score=24.16 Aligned_cols=62 Identities=19% Similarity=0.320 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 85 DKENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHI 146 (168)
Q Consensus 85 e~e~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~ 146 (168)
++--++++++++-...-+.-.+.-...|.++-.+...+..+...|..++..|++=+..|..+
T Consensus 247 ekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ~e 308 (309)
T PF09728_consen 247 EKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQAE 308 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
No 476
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=36.91 E-value=1e+02 Score=27.51 Aligned_cols=48 Identities=23% Similarity=0.417 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Q 030957 109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTASRRG 156 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~~~ 156 (168)
.++|.+||.++..++.....+..++..|..-+..|..........+.|
T Consensus 150 Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRnNiRIiG 197 (370)
T PF02994_consen 150 EERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRRNNIRIIG 197 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEES
T ss_pred HhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCCceeEEe
No 477
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=36.86 E-value=1.6e+02 Score=21.12 Aligned_cols=62 Identities=19% Similarity=0.273 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 89 KRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 89 kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
+++...+-+=+++-.-|.-+.....+|+.+++.|......|-.++.........|...-.++
T Consensus 11 ~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Ev 72 (89)
T PF13747_consen 11 TRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREV 72 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHH
No 478
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=36.59 E-value=3.3e+02 Score=24.75 Aligned_cols=69 Identities=16% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Q 030957 88 NKRLKRLLRNRVSAQQARERKKAYLNELETR---VKDLERKNSELDERLSTLQNENQMLRHILKNTTASRRG 156 (168)
Q Consensus 88 ~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~---v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~~~ 156 (168)
++.++.+...-...+.-|..--..|..+... +..|..+..+|+.++..|+.+...|.+.|..+...++.
T Consensus 34 d~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN 105 (425)
T PRK05431 34 DEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRIPN 105 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
No 479
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=36.47 E-value=85 Score=29.85 Aligned_cols=36 Identities=31% Similarity=0.511 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLR 144 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr 144 (168)
...+++++.++..|.++..+|+.+++.|+++...|+
T Consensus 92 ~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~ 127 (646)
T PRK05771 92 EEELEKIEKEIKELEEEISELENEIKELEQEIERLE 127 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 480
>PF11461 RILP: Rab interacting lysosomal protein; InterPro: IPR021563 RILP contains a domain which contains two coiled-coil regions and is found mainly in the cytosol. RILP is recruited onto late endosomal and lysosomal membranes by Rab7 and acts as a downstream effector of Rab7. This recruitment process is important for phagosome maturation and fusion with late endosomes and lysosomes. ; PDB: 1YHN_B.
Probab=36.30 E-value=1.1e+02 Score=20.80 Aligned_cols=30 Identities=20% Similarity=0.352 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 118 RVKDLERKNSELDERLSTLQNENQMLRHIL 147 (168)
Q Consensus 118 ~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L 147 (168)
++.+.-.|-++|+.+|-.|+.|..+++.-+
T Consensus 4 ELr~VL~ERNeLK~~v~~leEEL~~yk~~~ 33 (60)
T PF11461_consen 4 ELREVLQERNELKARVFLLEEELAYYKSEL 33 (60)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
No 481
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=36.25 E-value=1.3e+02 Score=24.56 Aligned_cols=38 Identities=26% Similarity=0.338 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHILKN 149 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~ 149 (168)
...+..++..|+.++.+|+.++-.+..+...+|.++..
T Consensus 38 ~~~~~~~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~~r 75 (193)
T COG0576 38 LEEEQQEIAELEAQLEELKDKYLRAQAEFENLRKRTER 75 (193)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 482
>PF13971 Mei4: Meiosis-specific protein Mei4
Probab=35.90 E-value=89 Score=28.45 Aligned_cols=37 Identities=22% Similarity=0.414 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 108 KKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHIL 147 (168)
Q Consensus 108 Kk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L 147 (168)
.++|.+.|-..+.. +...-+.+++.|+.|...|||.|
T Consensus 39 ~ReytE~La~~l~~---qd~~WK~kae~LE~EvLqlrQeL 75 (375)
T PF13971_consen 39 SREYTEHLAKRLSE---QDESWKSKAEALEAEVLQLRQEL 75 (375)
T ss_pred HHHHHHHHHHHHhh---hhhhHHHHHHHHHHHHHHHHHHH
No 483
>PF14661 HAUS6_N: HAUS augmin-like complex subunit 6 N-terminus
Probab=35.86 E-value=2.2e+02 Score=23.77 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 102 QQARERKKAYLNELETRVKD---LERKNSELDERLSTLQNENQMLRHIL 147 (168)
Q Consensus 102 ~~sR~RKk~~~~~LE~~v~~---Le~eN~~L~~~v~~L~~En~~Lr~~L 147 (168)
..+..-+..++..|+.++.. +....+.|..++..|..+...+..++
T Consensus 160 a~~~~~r~~~~~~~~~~~~~~~~~~~~aq~L~~k~r~l~~~~~~~~~~~ 208 (247)
T PF14661_consen 160 ARILAHRNSFLQILQEKDAARQKYQEFAQLLRKKYRELSAECAELQAQL 208 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 484
>PRK02224 chromosome segregation protein; Provisional
Probab=35.82 E-value=3.9e+02 Score=26.07 Aligned_cols=65 Identities=20% Similarity=0.305 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 86 KENKRLKRLLRNRVSAQQARERK------KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 86 ~e~kr~rR~~rNR~AA~~sR~RK------k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
.+.+..+...++++...+.|... .+..+.|..++..+......|...+..+..+...|...|..+
T Consensus 616 ~~l~~~~~~~~~~l~~~r~~i~~l~~~~~~~~~e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~ 686 (880)
T PRK02224 616 EALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAV 686 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 485
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.62 E-value=1.6e+02 Score=25.49 Aligned_cols=57 Identities=16% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCC
Q 030957 109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTASRRGGSGGDTNADG 166 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~~~~~~~~~~~~~ 166 (168)
.++|..|+.+|.+|.. +.+|+.+......+....-..|..+.........+.+.-.+
T Consensus 62 ~~Ql~~l~g~i~~L~~-~~~~q~q~~~~~~~qe~~~~~~~~~~~g~~a~~~~~~~~~~ 118 (262)
T COG1729 62 EQQLRQLQGKIEELRG-IQELQYQNNQNVERQEENEARLDSLESGRQALAQGIGDQSG 118 (262)
T ss_pred HHHHHHHHhhHHHHHh-HHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccc
No 486
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=35.52 E-value=3.1e+02 Score=28.86 Aligned_cols=63 Identities=27% Similarity=0.315 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHh
Q 030957 88 NKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQ--------NENQMLRHILKNT 150 (168)
Q Consensus 88 ~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~--------~En~~Lr~~L~~~ 150 (168)
...+..+...-..+..-+......+..++.++..|+.+...|..++..|. .+...|++++..+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~~~~eL~el~~ql~~~ 345 (1353)
T TIGR02680 275 QTQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGSPAYQDAEELERARADAEAL 345 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
No 487
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=35.52 E-value=1.6e+02 Score=20.93 Aligned_cols=38 Identities=18% Similarity=0.331 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHILKN 149 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~ 149 (168)
+.+|-.++..|+.....++.++..-..|+..-.++|.+
T Consensus 34 vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarAn~rldn 71 (78)
T COG4238 34 VQTLNAKVDQLENDVNAMRSDVQAAKDEAARANQRLDN 71 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
No 488
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=35.50 E-value=3.4e+02 Score=24.54 Aligned_cols=77 Identities=13% Similarity=0.200 Sum_probs=0.0
Q ss_pred CcHHHHHHHHHHHhHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Q 030957 84 ADKENKRLKRLLRNRVSAQQARER------------KKAYLNELETRVKDLERKNSELDERL-------STLQNENQMLR 144 (168)
Q Consensus 84 ~e~e~kr~rR~~rNR~AA~~sR~R------------Kk~~~~~LE~~v~~Le~eN~~L~~~v-------~~L~~En~~Lr 144 (168)
++...+..+|..+-+..=..+|.+ +-..+..||.++..++.....++... ..|..+...||
T Consensus 185 e~eV~~~eerv~kAs~~L~~yr~kngvfdp~~qaevq~~Lvs~Le~eL~~iqaqL~tvks~m~~~nPqi~~LkarieSlr 264 (372)
T COG3524 185 EEEVQKAEERVKKASNDLTDYRIKNGVFDPKAQAEVQMSLVSKLEDELIVIQAQLDTVKSVMNPENPQIPGLKARIESLR 264 (372)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhhcCccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHH
Q ss_pred HHHHHhccccCCCCCC
Q 030957 145 HILKNTTASRRGGSGG 160 (168)
Q Consensus 145 ~~L~~~~~~~~~~~~~ 160 (168)
++|..-...+.+++.|
T Consensus 265 kql~qe~q~isag~~~ 280 (372)
T COG3524 265 KQLLQEKQAISAGGSS 280 (372)
T ss_pred HHHHHHHHHhcCCCCc
No 489
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=35.48 E-value=1.2e+02 Score=27.83 Aligned_cols=58 Identities=16% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Q 030957 99 VSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTASRRG 156 (168)
Q Consensus 99 ~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~~~ 156 (168)
+.|..-|+|-.+.-.+.|..+.++..+...|+.++..+.+--.+|+..+..+....++
T Consensus 227 ee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkd 284 (561)
T KOG1103|consen 227 EEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKD 284 (561)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 490
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=35.44 E-value=2.5e+02 Score=26.73 Aligned_cols=66 Identities=14% Similarity=0.292 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 86 KENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLER-------KNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 86 ~e~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~-------eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
++.+..-...+++.-++...--+++.+++++.+++.|+. +..+.+++++.|..|....++.+..+.
T Consensus 167 ~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~ 239 (555)
T TIGR03545 167 EEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAK 239 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 491
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=35.35 E-value=2.4e+02 Score=24.49 Aligned_cols=65 Identities=25% Similarity=0.363 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 85 DKENKRLKRLLRNRVSAQQARERKKAYLNELETRVKD-LERKNSELDERLSTLQNENQMLRHILKN 149 (168)
Q Consensus 85 e~e~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~-Le~eN~~L~~~v~~L~~En~~Lr~~L~~ 149 (168)
.+-.++.-+.+-.-.-+-+-.+||++...+|-.+... +-.+..+|++++..|+.+...|++.+..
T Consensus 181 ~k~~~~qv~~in~qlErLRL~krrlQl~g~Ld~~~q~~~~ae~seLq~r~~~l~~~L~~L~~e~~r 246 (289)
T COG4985 181 DKMVEQQVRVINSQLERLRLEKRRLQLNGQLDDEFQQHYVAEKSELQKRLAQLQTELDALRAELER 246 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
No 492
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=35.30 E-value=2.1e+02 Score=22.08 Aligned_cols=44 Identities=16% Similarity=0.328 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH
Q 030957 106 ERKKAYLNELETRVKDLERKNSELDERLSTLQNENQ--------MLRHILKN 149 (168)
Q Consensus 106 ~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~--------~Lr~~L~~ 149 (168)
..|..-+.+|+..+..++.+..+|.-+...+..|+. .+++++..
T Consensus 16 ~~K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~ 67 (131)
T PF11068_consen 16 KWKEELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQ 67 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHH
No 493
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=35.30 E-value=2.4e+02 Score=22.79 Aligned_cols=63 Identities=21% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 89 KRLKRLLRNRVSAQQARERKKAYLNELETRVKDLER------KNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 89 kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~------eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
.....+...-....+.-+.-+..+..|+.++..+.. +-..|..++..|..++..|+..|..+.
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~ 130 (188)
T PF03962_consen 62 QAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYS 130 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=35.21 E-value=1.6e+02 Score=23.67 Aligned_cols=42 Identities=14% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
++|++.|+..+..+++.+..|-.+...|......|=..+..+
T Consensus 20 ~eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~~~efg~~~~~l 61 (200)
T cd07624 20 NEYLTLFGEKLGTIERISQRIHKERIEYFDELKEYSPIFQLW 61 (200)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 495
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=35.18 E-value=34 Score=26.39 Aligned_cols=41 Identities=37% Similarity=0.497 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKN 149 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~ 149 (168)
...+..|+.++..|+.+...|..++..+..+...++..+..
T Consensus 10 ~~~~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~ 50 (165)
T PF01025_consen 10 DEEIEELEEELEELEKEIEELKERLLRLQAEFENYRKRLEK 50 (165)
T ss_dssp HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 496
>PRK00106 hypothetical protein; Provisional
Probab=35.04 E-value=4e+02 Score=25.32 Aligned_cols=65 Identities=9% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 86 KENKRLKRLLRNRVSAQQAR-ERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 86 ~e~kr~rR~~rNR~AA~~sR-~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
.+..+.-+.+++++..+..| .+|.+.++.-+..+...+.+.......+..+..+...+...+..+
T Consensus 86 ~ElEkel~eEr~rL~qrE~rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~ 151 (535)
T PRK00106 86 EEIEQEFKSERQELKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKL 151 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=34.84 E-value=3.7e+02 Score=24.83 Aligned_cols=85 Identities=15% Similarity=0.179 Sum_probs=0.0
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---------------------------------HHHHHH
Q 030957 75 GQRKRGRSPADKENKRLKRLLRNRVSAQQARERKKAYLNEL---------------------------------ETRVKD 121 (168)
Q Consensus 75 ~~rkr~r~~~e~e~kr~rR~~rNR~AA~~sR~RKk~~~~~L---------------------------------E~~v~~ 121 (168)
.++.-..+.....+|..+|+.-..+-=+|-|..=..+|.+| ..++.+
T Consensus 215 ~~rt~~~~~~~~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E 294 (411)
T KOG1318|consen 215 GPRTHPKTDATALERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRARE 294 (411)
T ss_pred CCCCCCCcccchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 030957 122 LERKNSELDERLSTLQNENQMLRHILKNTTASRRGGSG 159 (168)
Q Consensus 122 Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~~~~~~ 159 (168)
++..-..|...+..|...|.+|+.++..+...+....+
T Consensus 295 ~~~rqk~le~~n~~L~~rieeLk~~~~~~~~~~~~~~~ 332 (411)
T KOG1318|consen 295 LENRQKKLESTNQELALRIEELKSEAGRHGLQVEPSKL 332 (411)
T ss_pred HHhhhhHHHhHHHHHHHHHHHHHHHHHHhcCccccccc
No 498
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=34.84 E-value=2.3e+02 Score=22.34 Aligned_cols=51 Identities=27% Similarity=0.339 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 99 VSAQQARERKKAYLNE--------LETRVKDLERKNSELDERLSTLQNENQMLRHILKN 149 (168)
Q Consensus 99 ~AA~~sR~RKk~~~~~--------LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~ 149 (168)
+...+.+.-++.|..- ||.-+..+..++.+++..++.++.++..|...+..
T Consensus 20 ~~~~kl~kl~r~Y~~lm~g~~~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 78 (151)
T PF14584_consen 20 ILNIKLRKLKRRYDALMRGKDGKNLEDLLNELFDQIDELKEELEELEKRIEELEEKLRN 78 (151)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 499
>PRK14146 heat shock protein GrpE; Provisional
Probab=34.80 E-value=1.4e+02 Score=24.95 Aligned_cols=38 Identities=11% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHILKN 149 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~ 149 (168)
+..|+.++..|+.+...|+.++-.+..+...+|.+...
T Consensus 56 ~~~l~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~k 93 (215)
T PRK14146 56 ETSLQKELDNAKKEIESLKDSWARERAEFQNFKRRSAQ 93 (215)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>PF14335 DUF4391: Domain of unknown function (DUF4391)
Probab=34.78 E-value=1.3e+02 Score=24.66 Aligned_cols=51 Identities=22% Similarity=0.249 Sum_probs=0.0
Q ss_pred hHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH
Q 030957 97 NRVSAQQARER-------KKAYLNELETRVKDLERKNSELDERLS---------TLQNENQMLRHIL 147 (168)
Q Consensus 97 NR~AA~~sR~R-------Kk~~~~~LE~~v~~Le~eN~~L~~~v~---------~L~~En~~Lr~~L 147 (168)
|++.+-.+... .-.+.-+...++..|+++...|+.++. +|..|++.|+.+|
T Consensus 155 ~~i~~~~~~~~~g~~~~~~~~~~~~~~~~i~~L~kei~~L~~~~~kEkq~nrkveln~elk~l~~eL 221 (221)
T PF14335_consen 155 NQIIALNAAPNTGEFEKTSLWERIERLEQIEKLEKEIAKLKKKIKKEKQFNRKVELNTELKKLKKEL 221 (221)
T ss_pred HHHhcchhhhhcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcC
Done!