Query 030957
Match_columns 168
No_of_seqs 201 out of 1116
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 11:02:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030957.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030957hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1t2k_D Cyclic-AMP-dependent tr 99.7 3.1E-16 1.1E-20 105.2 9.3 59 89-147 1-59 (61)
2 2wt7_A Proto-oncogene protein 99.7 4.6E-16 1.6E-20 105.2 9.7 61 89-149 2-62 (63)
3 1jnm_A Proto-oncogene C-JUN; B 99.6 7.4E-16 2.5E-20 103.8 6.9 60 90-149 2-61 (62)
4 1ci6_A Transcription factor AT 99.6 2E-15 6.9E-20 102.2 8.3 62 89-150 2-63 (63)
5 1hjb_A Ccaat/enhancer binding 99.5 1.1E-13 3.6E-18 99.4 9.9 74 82-155 8-81 (87)
6 1dh3_A Transcription factor CR 99.5 4.1E-14 1.4E-18 93.4 6.9 51 89-139 1-51 (55)
7 1gu4_A CAAT/enhancer binding p 99.5 1.9E-13 6.4E-18 96.3 7.8 69 82-150 8-76 (78)
8 2dgc_A Protein (GCN4); basic d 99.4 1.3E-12 4.4E-17 88.4 6.8 53 87-139 7-59 (63)
9 1gd2_E Transcription factor PA 99.2 1.3E-10 4.4E-15 80.2 8.7 59 91-149 10-68 (70)
10 2oqq_A Transcription factor HY 99.0 4.3E-10 1.5E-14 69.8 5.9 41 109-149 2-42 (42)
11 2wt7_B Transcription factor MA 98.8 8.6E-08 2.9E-12 68.9 10.6 65 87-151 25-89 (90)
12 3a5t_A Transcription factor MA 98.6 7.1E-10 2.4E-14 82.2 -4.0 66 86-151 34-99 (107)
13 1skn_P DNA-binding domain of S 97.5 4.6E-05 1.6E-09 54.6 2.4 31 87-117 60-90 (92)
14 2c9l_Y EB1, zebra, BZLF1 trans 96.6 0.016 5.5E-07 37.9 7.8 38 93-130 5-42 (63)
15 2oxj_A Hybrid alpha/beta pepti 96.2 0.0065 2.2E-07 35.8 4.1 28 110-137 1-28 (34)
16 1kd8_A GABH AIV, GCN4 acid bas 96.2 0.0068 2.3E-07 36.2 4.0 30 111-140 2-31 (36)
17 3m48_A General control protein 96.1 0.0074 2.5E-07 35.4 3.7 27 111-137 1-27 (33)
18 1kd8_B GABH BLL, GCN4 acid bas 96.0 0.018 6E-07 34.4 5.1 29 110-138 1-29 (36)
19 3c3f_A Alpha/beta peptide with 95.9 0.012 4.3E-07 34.6 4.1 28 110-137 1-28 (34)
20 2bni_A General control protein 95.5 0.018 6.2E-07 33.9 3.9 28 110-137 1-28 (34)
21 3c3g_A Alpha/beta peptide with 95.4 0.031 1.1E-06 32.7 4.7 26 112-137 2-27 (33)
22 2kz5_A Transcription factor NF 95.3 0.0011 3.6E-08 47.4 -2.3 24 87-110 64-87 (91)
23 2hy6_A General control protein 95.3 0.024 8.2E-07 33.4 3.9 27 111-137 2-28 (34)
24 2yy0_A C-MYC-binding protein; 95.2 0.044 1.5E-06 35.3 5.3 33 117-149 19-51 (53)
25 1uo4_A General control protein 95.1 0.029 9.8E-07 33.1 3.9 27 111-137 2-28 (34)
26 2wq1_A General control protein 95.1 0.045 1.5E-06 32.0 4.7 26 112-137 2-27 (33)
27 3he5_A Synzip1; heterodimeric 94.8 0.091 3.1E-06 32.5 5.6 37 111-147 4-47 (49)
28 1gd2_E Transcription factor PA 94.5 0.047 1.6E-06 37.1 4.2 36 109-144 35-70 (70)
29 2r2v_A GCN4 leucine zipper; co 94.3 0.083 2.9E-06 31.1 4.5 31 111-148 2-32 (34)
30 2jee_A YIIU; FTSZ, septum, coi 94.1 0.092 3.2E-06 36.7 5.3 41 112-152 22-69 (81)
31 3efg_A Protein SLYX homolog; x 94.1 0.21 7.2E-06 34.4 7.0 47 110-156 14-60 (78)
32 3m91_A Proteasome-associated A 93.8 0.34 1.2E-05 30.9 7.1 42 110-151 9-50 (51)
33 1fmh_A General control protein 93.5 0.15 5.2E-06 29.1 4.5 29 112-140 3-31 (33)
34 1nkp_B MAX protein, MYC proto- 93.0 0.13 4.6E-06 35.2 4.6 35 110-151 47-81 (83)
35 1deb_A APC protein, adenomatou 93.0 0.42 1.5E-05 30.6 6.5 41 112-152 5-52 (54)
36 1nlw_A MAD protein, MAX dimeri 92.0 0.36 1.2E-05 33.2 5.6 34 108-148 45-78 (80)
37 3oja_B Anopheles plasmodium-re 91.9 1.3 4.4E-05 39.2 10.7 53 102-154 529-581 (597)
38 1nkp_B MAX protein, MYC proto- 91.9 0.68 2.3E-05 31.5 7.0 23 128-150 51-73 (83)
39 3ra3_B P2F; coiled coil domain 91.7 0.15 5.3E-06 28.1 2.8 26 119-144 2-27 (28)
40 1nkp_A C-MYC, MYC proto-oncoge 91.5 0.35 1.2E-05 33.8 5.3 30 122-151 57-86 (88)
41 3m9b_A Proteasome-associated A 91.1 0.3 1E-05 40.7 5.3 44 109-152 53-96 (251)
42 3mq7_A Bone marrow stromal ant 90.9 1.3 4.3E-05 33.0 7.9 37 112-148 73-109 (121)
43 1nlw_A MAD protein, MAX dimeri 90.7 0.41 1.4E-05 32.9 4.9 30 106-135 50-79 (80)
44 3nmd_A CGMP dependent protein 90.5 0.41 1.4E-05 32.7 4.7 36 108-143 31-66 (72)
45 1a93_B MAX protein, coiled coi 90.5 0.6 2E-05 27.5 4.7 29 122-150 5-33 (34)
46 1hjb_A Ccaat/enhancer binding 90.1 3.3 0.00011 29.0 9.2 53 96-148 29-81 (87)
47 1nkp_A C-MYC, MYC proto-oncoge 89.7 1.6 5.6E-05 30.3 7.4 37 108-144 50-86 (88)
48 2jee_A YIIU; FTSZ, septum, coi 89.6 1.4 4.8E-05 30.7 6.8 31 112-142 8-38 (81)
49 1gmj_A ATPase inhibitor; coile 89.5 3.7 0.00013 28.7 9.0 29 123-151 50-78 (84)
50 1kd8_B GABH BLL, GCN4 acid bas 88.8 0.96 3.3E-05 26.8 4.7 32 118-149 2-33 (36)
51 1am9_A Srebp-1A, protein (ster 88.8 0.74 2.5E-05 31.6 5.0 25 127-151 53-77 (82)
52 2w6a_A ARF GTPase-activating p 88.7 1.6 5.4E-05 28.8 6.2 30 115-144 25-61 (63)
53 3s4r_A Vimentin; alpha-helix, 88.6 1.1 3.6E-05 31.7 5.8 39 109-147 55-93 (93)
54 3o0z_A RHO-associated protein 88.6 2.4 8.2E-05 33.2 8.3 49 102-150 82-130 (168)
55 1dip_A Delta-sleep-inducing pe 88.4 0.45 1.5E-05 32.7 3.5 30 118-147 16-45 (78)
56 1uii_A Geminin; human, DNA rep 88.3 2.6 9E-05 29.4 7.5 31 118-148 47-77 (83)
57 1go4_E MAD1 (mitotic arrest de 88.1 1.4 4.7E-05 31.8 6.2 25 128-152 72-96 (100)
58 1p9i_A Cortexillin I/GCN4 hybr 88.1 0.83 2.8E-05 25.7 3.9 26 113-138 2-27 (31)
59 2xdj_A Uncharacterized protein 87.8 5.2 0.00018 27.7 9.0 42 110-151 20-61 (83)
60 2zqm_A Prefoldin beta subunit 87.5 2.5 8.7E-05 29.7 7.4 45 108-152 68-112 (117)
61 2oxj_A Hybrid alpha/beta pepti 87.1 1.2 4.3E-05 26.0 4.4 30 118-147 2-31 (34)
62 4dzn_A Coiled-coil peptide CC- 87.1 1.7 5.8E-05 24.7 4.8 27 119-145 4-30 (33)
63 3m48_A General control protein 87.0 0.81 2.8E-05 26.7 3.5 28 120-147 3-30 (33)
64 1kd8_A GABH AIV, GCN4 acid bas 86.9 0.99 3.4E-05 26.8 3.9 32 118-149 2-33 (36)
65 2lz1_A Nuclear factor erythroi 86.9 0.0078 2.7E-07 42.9 -6.2 24 87-110 64-87 (90)
66 2wq1_A General control protein 86.5 1.4 4.9E-05 25.6 4.4 29 119-147 2-30 (33)
67 2wuj_A Septum site-determining 86.2 0.82 2.8E-05 29.4 3.7 29 110-138 27-55 (57)
68 1wlq_A Geminin; coiled-coil; 2 85.8 3.5 0.00012 28.8 7.0 23 122-144 43-65 (83)
69 3c3f_A Alpha/beta peptide with 85.7 1.7 5.6E-05 25.5 4.4 31 118-148 2-32 (34)
70 3a7p_A Autophagy protein 16; c 85.5 9.7 0.00033 29.3 10.0 40 110-149 96-135 (152)
71 2dgc_A Protein (GCN4); basic d 85.2 1.4 4.8E-05 28.9 4.6 26 126-151 32-57 (63)
72 2zxx_A Geminin; coiled-coil, c 85.2 3.1 0.00011 28.8 6.5 26 122-147 39-64 (79)
73 1dh3_A Transcription factor CR 85.1 1.7 5.8E-05 27.7 4.8 30 125-154 23-52 (55)
74 2wvr_A Geminin; DNA replicatio 84.4 3.7 0.00013 33.1 7.5 36 112-151 124-159 (209)
75 3i00_A HIP-I, huntingtin-inter 84.3 6 0.0002 29.2 8.1 51 102-152 32-82 (120)
76 3c3g_A Alpha/beta peptide with 84.3 2.1 7.2E-05 24.9 4.4 30 119-148 2-31 (33)
77 1gu4_A CAAT/enhancer binding p 84.2 8 0.00027 26.4 9.1 43 96-138 29-71 (78)
78 1go4_E MAD1 (mitotic arrest de 84.1 2.1 7E-05 30.9 5.3 28 111-138 13-40 (100)
79 3hnw_A Uncharacterized protein 83.8 11 0.00039 28.1 9.7 37 114-150 93-129 (138)
80 1dip_A Delta-sleep-inducing pe 83.8 1.3 4.5E-05 30.4 4.0 23 109-131 21-43 (78)
81 2oqq_A Transcription factor HY 83.7 2.1 7.3E-05 26.2 4.5 24 110-133 17-40 (42)
82 3oja_A Leucine-rich immune mol 83.6 9.7 0.00033 32.9 10.6 51 101-151 426-476 (487)
83 1fxk_A Prefoldin; archaeal pro 83.6 4.6 0.00016 28.0 7.0 41 109-149 64-104 (107)
84 1uo4_A General control protein 83.5 1.6 5.5E-05 25.6 3.7 31 118-148 2-32 (34)
85 3mq7_A Bone marrow stromal ant 83.4 3.5 0.00012 30.5 6.5 43 116-158 70-112 (121)
86 2dfs_A Myosin-5A; myosin-V, in 83.4 6.9 0.00024 38.3 10.4 23 129-151 1021-1043(1080)
87 1wt6_A Myotonin-protein kinase 83.3 9.2 0.00031 26.5 9.4 48 96-143 24-71 (81)
88 2xdj_A Uncharacterized protein 83.1 4.9 0.00017 27.8 6.8 46 103-148 20-65 (83)
89 3hnw_A Uncharacterized protein 83.0 4.9 0.00017 30.2 7.3 21 130-150 102-122 (138)
90 1a93_B MAX protein, coiled coi 82.9 2.1 7.1E-05 25.1 4.1 25 113-137 10-34 (34)
91 1jnm_A Proto-oncogene C-JUN; B 82.5 3.4 0.00012 26.7 5.5 35 118-152 23-57 (62)
92 3qh9_A Liprin-beta-2; coiled-c 82.2 5.9 0.0002 27.5 6.9 41 109-149 25-65 (81)
93 3s9g_A Protein hexim1; cyclin 82.1 9.3 0.00032 27.5 8.1 16 131-146 72-87 (104)
94 1t2k_D Cyclic-AMP-dependent tr 82.1 4 0.00014 26.2 5.7 33 119-151 24-56 (61)
95 1deb_A APC protein, adenomatou 82.0 1.9 6.3E-05 27.6 3.9 26 126-151 5-30 (54)
96 2j5u_A MREC protein; bacterial 81.9 0.59 2E-05 38.4 2.0 36 113-148 22-60 (255)
97 3swy_A Cyclic nucleotide-gated 81.9 6 0.0002 24.6 6.2 37 114-150 2-42 (46)
98 3nmd_A CGMP dependent protein 81.8 8.4 0.00029 26.1 7.4 27 109-135 39-65 (72)
99 2bni_A General control protein 81.7 1.8 6.2E-05 25.3 3.5 31 118-148 2-32 (34)
100 4etp_A Kinesin-like protein KA 81.7 1.6 5.3E-05 38.1 4.7 41 111-151 18-58 (403)
101 2hy6_A General control protein 81.6 2.7 9.1E-05 24.6 4.1 31 118-148 2-32 (34)
102 3w03_C DNA repair protein XRCC 81.6 4 0.00014 32.3 6.6 40 109-148 144-183 (184)
103 1zme_C Proline utilization tra 81.1 1.5 5.2E-05 28.0 3.4 25 109-133 43-67 (70)
104 2yy0_A C-MYC-binding protein; 81.0 3.5 0.00012 26.2 5.0 26 113-138 22-47 (53)
105 1uii_A Geminin; human, DNA rep 80.8 7.3 0.00025 27.1 7.0 32 120-151 42-73 (83)
106 3s4r_A Vimentin; alpha-helix, 80.6 6.4 0.00022 27.6 6.8 29 122-150 54-82 (93)
107 3s9g_A Protein hexim1; cyclin 80.3 5.2 0.00018 28.8 6.2 29 110-145 65-93 (104)
108 2oa5_A Hypothetical protein BQ 80.0 1.1 3.8E-05 32.9 2.7 22 127-148 11-32 (110)
109 2fxo_A Myosin heavy chain, car 79.9 6.6 0.00022 28.8 7.0 44 110-153 83-126 (129)
110 2wt7_B Transcription factor MA 79.7 4.3 0.00015 28.6 5.6 35 118-152 49-83 (90)
111 3ghg_A Fibrinogen alpha chain; 79.7 5 0.00017 36.7 7.4 47 105-151 105-151 (562)
112 3mq9_A Bone marrow stromal ant 79.7 16 0.00056 31.3 10.5 30 123-152 435-464 (471)
113 2dfs_A Myosin-5A; myosin-V, in 79.1 11 0.00038 36.9 10.1 33 110-142 1016-1048(1080)
114 3ra3_A P1C; coiled coil domain 78.5 2.8 9.7E-05 23.0 3.4 24 121-144 4-27 (28)
115 4dzn_A Coiled-coil peptide CC- 78.2 4.4 0.00015 23.0 4.2 27 125-151 3-29 (33)
116 2w83_C C-JUN-amino-terminal ki 78.1 4.8 0.00017 27.7 5.3 39 113-151 33-71 (77)
117 3a2a_A Voltage-gated hydrogen 77.9 2.9 0.0001 27.1 3.9 16 136-151 37-52 (58)
118 3oja_B Anopheles plasmodium-re 77.8 9.9 0.00034 33.4 8.7 41 110-150 530-570 (597)
119 1ci6_A Transcription factor AT 77.4 6.8 0.00023 25.4 5.7 27 111-137 31-57 (63)
120 3efg_A Protein SLYX homolog; x 77.4 5.4 0.00018 27.2 5.4 44 110-153 21-64 (78)
121 3u06_A Protein claret segregat 77.0 3.3 0.00011 36.3 5.3 45 109-153 16-60 (412)
122 3ol1_A Vimentin; structural ge 76.7 9.7 0.00033 27.6 7.0 44 105-148 36-79 (119)
123 3ljm_A Coil Ser L9C; de novo d 76.7 5.6 0.00019 22.3 4.3 25 113-137 4-28 (31)
124 2v71_A Nuclear distribution pr 76.2 27 0.00092 27.6 10.6 51 100-150 32-82 (189)
125 1l8d_A DNA double-strand break 76.2 13 0.00044 26.0 7.4 39 110-148 64-102 (112)
126 3m9b_A Proteasome-associated A 76.1 3.1 0.00011 34.5 4.6 38 108-145 59-96 (251)
127 3swf_A CGMP-gated cation chann 76.1 6.4 0.00022 26.9 5.4 26 114-139 4-29 (74)
128 1wlq_A Geminin; coiled-coil; 2 76.0 12 0.00042 26.0 7.0 36 112-151 47-82 (83)
129 3a7o_A Autophagy protein 16; c 75.9 10 0.00035 25.8 6.3 47 106-152 28-74 (75)
130 2ve7_C Kinetochore protein NUF 75.1 4.8 0.00016 32.9 5.5 63 87-149 118-180 (250)
131 3m91_A Proteasome-associated A 75.1 9.8 0.00034 24.0 5.8 29 113-141 19-47 (51)
132 4h22_A Leucine-rich repeat fli 74.7 8.4 0.00029 27.8 6.0 40 109-148 36-75 (103)
133 3he5_B Synzip2; heterodimeric 74.7 13 0.00043 23.1 6.1 28 113-140 20-47 (52)
134 1hlo_A Protein (transcription 74.6 2.9 9.9E-05 28.2 3.4 7 134-140 67-73 (80)
135 3cve_A Homer protein homolog 1 74.6 8.4 0.00029 26.1 5.7 11 139-149 57-67 (72)
136 2w6b_A RHO guanine nucleotide 74.5 14 0.0005 23.7 6.6 39 112-150 12-50 (56)
137 3q8t_A Beclin-1; autophagy, AT 74.4 13 0.00044 26.1 6.9 30 114-143 22-51 (96)
138 3vmx_A Voltage-gated hydrogen 74.4 6.9 0.00024 24.6 4.8 18 133-150 27-44 (48)
139 2akf_A Coronin-1A; coiled coil 74.1 5.3 0.00018 22.7 3.8 27 114-140 3-29 (32)
140 3he4_A Synzip6; heterodimeric 74.1 12 0.00041 23.5 5.9 34 112-145 19-52 (56)
141 1l8d_A DNA double-strand break 74.0 10 0.00036 26.4 6.5 43 110-152 3-45 (112)
142 3a7p_A Autophagy protein 16; c 73.6 19 0.00066 27.6 8.2 48 105-152 77-124 (152)
143 3u06_A Protein claret segregat 73.5 10 0.00034 33.2 7.5 38 113-150 6-43 (412)
144 1jcd_A Major outer membrane li 73.0 14 0.0005 23.3 6.2 31 111-141 5-35 (52)
145 4ati_A MITF, microphthalmia-as 72.7 1.4 4.9E-05 32.2 1.6 40 108-151 72-111 (118)
146 3oa7_A Head morphogenesis prot 72.7 13 0.00045 29.8 7.3 46 108-153 28-73 (206)
147 1zxa_A CGMP-dependent protein 72.2 9.1 0.00031 25.5 5.3 31 107-137 22-52 (67)
148 2wt7_A Proto-oncogene protein 72.1 17 0.00057 23.4 8.3 33 119-151 25-57 (63)
149 1jcd_A Major outer membrane li 71.6 12 0.00042 23.7 5.6 31 118-148 5-35 (52)
150 1lwu_C Fibrinogen gamma chain; 71.3 14 0.00049 31.4 7.8 27 119-145 28-54 (323)
151 1ytz_T Troponin T; muscle, THI 71.1 20 0.00068 25.8 7.4 41 112-152 51-91 (107)
152 1ik9_A DNA repair protein XRCC 71.0 12 0.00042 29.9 6.9 33 108-140 137-169 (213)
153 1j1d_B Troponin T, TNT; THIN f 70.9 15 0.00052 26.4 6.7 44 109-152 48-91 (106)
154 1fxk_C Protein (prefoldin); ar 70.4 19 0.00063 25.9 7.3 32 113-144 98-129 (133)
155 4ath_A MITF, microphthalmia-as 70.3 16 0.00054 25.4 6.4 30 110-139 49-78 (83)
156 4etp_A Kinesin-like protein KA 70.2 13 0.00044 32.3 7.3 40 106-145 20-59 (403)
157 4b4t_K 26S protease regulatory 70.1 11 0.00038 33.0 7.0 41 112-152 51-91 (428)
158 2oa5_A Hypothetical protein BQ 69.4 2.8 9.6E-05 30.7 2.5 24 111-134 9-32 (110)
159 3u1c_A Tropomyosin alpha-1 cha 69.3 26 0.0009 24.5 10.7 38 111-148 31-68 (101)
160 3u1c_A Tropomyosin alpha-1 cha 69.1 21 0.00072 25.1 7.1 26 103-128 37-62 (101)
161 3he4_B Synzip5; heterodimeric 68.5 17 0.00058 22.0 5.9 24 109-132 9-32 (46)
162 3vmx_A Voltage-gated hydrogen 68.4 19 0.00065 22.5 7.1 31 119-149 6-36 (48)
163 3cve_A Homer protein homolog 1 67.9 25 0.00085 23.7 6.9 20 117-136 7-26 (72)
164 2er8_A Regulatory protein Leu3 67.5 3.1 0.00011 26.8 2.3 21 109-129 48-68 (72)
165 1ic2_A Tropomyosin alpha chain 66.9 26 0.00088 23.5 7.1 38 112-149 29-66 (81)
166 2wvr_A Geminin; DNA replicatio 66.8 18 0.00063 29.1 7.0 36 116-151 114-149 (209)
167 3u59_A Tropomyosin beta chain; 66.1 25 0.00084 24.6 6.9 27 114-140 34-60 (101)
168 3mud_A DNA repair protein XRCC 65.4 22 0.00076 27.9 7.1 21 119-139 137-157 (175)
169 1m1j_C Fibrinogen gamma chain; 65.3 32 0.0011 30.1 8.9 44 110-153 91-134 (409)
170 3a2a_A Voltage-gated hydrogen 65.3 24 0.00082 22.8 6.0 32 119-150 13-44 (58)
171 3cvf_A Homer-3, homer protein 64.9 30 0.001 23.6 6.9 11 139-149 63-73 (79)
172 2pnv_A Small conductance calci 64.5 13 0.00043 22.8 4.4 27 122-148 14-40 (43)
173 2zdi_C Prefoldin subunit alpha 64.3 29 0.00099 25.6 7.4 35 118-152 106-140 (151)
174 3kin_B Kinesin heavy chain; mo 63.9 13 0.00044 26.9 5.2 27 118-144 90-116 (117)
175 3lay_A Zinc resistance-associa 63.9 49 0.0017 25.6 8.9 9 142-150 135-143 (175)
176 1fzc_C Fibrin; blood coagulati 63.6 4 0.00014 34.8 2.7 41 111-151 5-45 (319)
177 4h22_A Leucine-rich repeat fli 63.6 30 0.001 24.9 7.0 36 113-148 33-68 (103)
178 2oto_A M protein; helical coil 63.2 27 0.00092 26.1 7.1 27 113-139 53-79 (155)
179 2pnv_A Small conductance calci 63.0 17 0.00059 22.1 4.8 32 111-142 10-41 (43)
180 4e61_A Protein BIM1; EB1-like 62.7 33 0.0011 24.8 7.1 27 113-139 14-40 (106)
181 3mq9_A Bone marrow stromal ant 62.7 23 0.00077 30.4 7.4 42 110-151 429-470 (471)
182 4ath_A MITF, microphthalmia-as 62.6 22 0.00074 24.7 5.9 40 108-151 37-76 (83)
183 2yko_A LINE-1 ORF1P; RNA-bindi 62.3 16 0.00054 29.9 6.0 40 112-151 8-47 (233)
184 4ani_A Protein GRPE; chaperone 62.2 22 0.00074 28.6 6.7 20 112-131 75-94 (213)
185 3ra3_A P1C; coiled coil domain 62.1 8.7 0.0003 21.0 2.9 25 113-137 3-27 (28)
186 3oja_A Leucine-rich immune mol 62.1 32 0.0011 29.5 8.3 39 114-152 425-463 (487)
187 2lw1_A ABC transporter ATP-bin 61.9 34 0.0012 23.2 7.5 18 113-130 25-42 (89)
188 3l4f_A RHO guanine nucleotide 61.5 31 0.0011 22.6 6.6 40 112-151 9-48 (61)
189 3swf_A CGMP-gated cation chann 60.9 36 0.0012 23.1 6.6 30 112-141 16-49 (74)
190 3cvf_A Homer-3, homer protein 60.8 36 0.0012 23.3 6.7 13 121-133 17-29 (79)
191 3he5_B Synzip2; heterodimeric 60.5 27 0.00092 21.5 6.7 28 118-145 18-45 (52)
192 1fxk_C Protein (prefoldin); ar 60.0 31 0.0011 24.7 6.7 41 111-151 89-129 (133)
193 1t3j_A Mitofusin 1; coiled coi 59.5 37 0.0013 24.0 6.8 41 111-151 48-91 (96)
194 3vkg_A Dynein heavy chain, cyt 59.4 50 0.0017 36.2 10.5 60 90-149 2015-2074(3245)
195 2v4h_A NF-kappa-B essential mo 59.3 38 0.0013 24.7 6.9 31 94-124 29-59 (110)
196 2l5g_A GPS2 protein, G protein 59.3 12 0.00043 22.2 3.5 21 109-129 14-34 (38)
197 1j1d_C Troponin I, TNI; THIN f 59.1 38 0.0013 25.3 7.1 40 113-152 68-107 (133)
198 1ykh_B RNA polymerase II holoe 58.3 29 0.00099 25.6 6.4 37 115-151 90-126 (132)
199 3qh9_A Liprin-beta-2; coiled-c 58.2 29 0.00099 24.0 5.8 38 114-151 16-53 (81)
200 2xzr_A Immunoglobulin-binding 58.1 43 0.0015 24.1 6.9 33 117-149 76-108 (114)
201 1deq_A Fibrinogen (alpha chain 57.9 19 0.00064 31.6 5.9 44 109-152 112-155 (390)
202 2ocy_A RAB guanine nucleotide 57.4 28 0.00096 26.7 6.3 26 123-148 114-139 (154)
203 1gk7_A Vimentin; intermediate 57.3 26 0.00089 20.7 4.8 17 131-147 20-36 (39)
204 2wg5_A General control protein 56.9 11 0.00038 26.9 3.7 25 120-144 10-34 (109)
205 3rrk_A V-type ATPase 116 kDa s 56.8 26 0.00089 29.0 6.6 28 112-139 101-128 (357)
206 1yke_B RNA polymerase II holoe 56.6 31 0.0011 26.1 6.4 39 115-153 90-128 (151)
207 2zxx_A Geminin; coiled-coil, c 55.8 44 0.0015 22.9 6.4 36 111-150 42-77 (79)
208 2eqb_B RAB guanine nucleotide 55.8 52 0.0018 23.3 7.0 13 137-149 82-94 (97)
209 2w83_C C-JUN-amino-terminal ki 55.7 20 0.00067 24.6 4.6 22 129-150 35-56 (77)
210 1g6u_A Domain swapped dimer; d 55.7 26 0.0009 21.3 4.7 25 126-150 22-46 (48)
211 3he4_A Synzip6; heterodimeric 55.7 2.6 9E-05 26.5 0.2 24 125-148 18-41 (56)
212 1gmj_A ATPase inhibitor; coile 55.3 49 0.0017 22.9 8.5 28 110-137 51-78 (84)
213 3o0z_A RHO-associated protein 55.2 48 0.0016 25.8 7.3 36 113-148 37-72 (168)
214 3gp4_A Transcriptional regulat 54.2 39 0.0013 24.7 6.6 41 112-152 90-130 (142)
215 1am9_A Srebp-1A, protein (ster 54.2 46 0.0016 22.3 9.6 28 109-136 49-76 (82)
216 1zxa_A CGMP-dependent protein 54.0 23 0.0008 23.5 4.7 27 127-153 28-54 (67)
217 1wle_A Seryl-tRNA synthetase; 53.7 1.2E+02 0.0042 27.0 11.0 31 121-151 120-150 (501)
218 3w03_C DNA repair protein XRCC 53.4 25 0.00085 27.7 5.5 30 110-139 152-181 (184)
219 3sja_C Golgi to ER traffic pro 53.3 40 0.0014 22.3 5.7 23 127-149 35-57 (65)
220 1vcs_A Vesicle transport throu 53.1 55 0.0019 22.8 7.6 26 128-153 71-96 (102)
221 3swy_A Cyclic nucleotide-gated 52.3 39 0.0013 20.8 6.6 19 111-129 6-24 (46)
222 3u59_A Tropomyosin beta chain; 51.6 57 0.002 22.6 10.6 23 105-127 39-61 (101)
223 2wg5_A General control protein 51.4 15 0.00052 26.1 3.7 24 113-136 10-33 (109)
224 3ghg_C Fibrinogen gamma chain; 51.2 95 0.0033 27.3 9.5 49 109-157 90-138 (411)
225 1ic2_A Tropomyosin alpha chain 51.2 52 0.0018 21.9 10.8 37 113-149 37-73 (81)
226 1gk6_A Vimentin; intermediate 51.1 27 0.00091 22.2 4.5 14 135-148 39-52 (59)
227 3q0x_A Centriole protein; cent 51.1 49 0.0017 26.8 7.1 57 89-151 163-219 (228)
228 2w6b_A RHO guanine nucleotide 51.1 20 0.00068 23.1 3.8 24 127-150 13-36 (56)
229 1fmh_A General control protein 50.6 23 0.0008 19.9 3.6 24 127-150 4-27 (33)
230 4dzo_A Mitotic spindle assembl 50.4 51 0.0018 24.0 6.6 39 110-148 4-42 (123)
231 1t6f_A Geminin; coiled-coil, c 50.3 37 0.0013 20.0 4.5 23 124-146 7-29 (37)
232 4b4t_J 26S protease regulatory 50.0 32 0.0011 30.0 6.2 42 110-151 25-66 (405)
233 2v66_B Nuclear distribution pr 49.8 45 0.0015 24.2 6.0 39 112-150 37-75 (111)
234 3gpv_A Transcriptional regulat 49.7 50 0.0017 24.3 6.5 34 120-153 98-131 (148)
235 2aze_A Transcription factor DP 49.3 37 0.0013 26.1 5.8 15 106-120 22-36 (155)
236 2v71_A Nuclear distribution pr 49.2 95 0.0032 24.4 10.6 35 112-146 90-124 (189)
237 2wuj_A Septum site-determining 48.9 32 0.0011 21.7 4.6 23 129-151 32-54 (57)
238 4fm3_A Uncharacterized hypothe 48.5 62 0.0021 23.0 6.5 43 107-149 54-96 (98)
239 3gpv_A Transcriptional regulat 47.5 34 0.0012 25.2 5.3 46 110-155 95-140 (148)
240 3sjb_C Golgi to ER traffic pro 47.2 52 0.0018 23.2 5.8 24 127-150 52-75 (93)
241 2aze_B Transcription factor E2 46.9 32 0.0011 24.5 4.8 28 113-140 9-36 (106)
242 3q4f_C DNA repair protein XRCC 46.7 40 0.0014 26.6 5.7 29 111-139 155-183 (186)
243 3tul_A Cell invasion protein S 46.7 46 0.0016 25.5 5.9 41 111-151 77-127 (158)
244 2yko_A LINE-1 ORF1P; RNA-bindi 46.3 44 0.0015 27.3 6.1 49 109-157 12-60 (233)
245 3trt_A Vimentin; cytoskeleton, 46.2 59 0.002 21.1 7.1 49 93-144 21-76 (77)
246 1m1j_A Fibrinogen alpha subuni 46.1 1.7E+02 0.0057 26.3 10.4 42 109-150 110-151 (491)
247 2ve7_A Kinetochore protein HEC 45.9 54 0.0018 27.4 6.8 30 110-139 185-214 (315)
248 1j1e_C Troponin I, TNI; THIN f 45.8 74 0.0025 24.9 7.1 37 115-151 70-106 (180)
249 1lrz_A FEMA, factor essential 45.6 57 0.002 27.7 7.1 20 110-129 247-266 (426)
250 2j5u_A MREC protein; bacterial 45.2 8.4 0.00029 31.4 1.7 27 120-146 22-48 (255)
251 1wle_A Seryl-tRNA synthetase; 45.2 94 0.0032 27.7 8.7 38 111-148 117-154 (501)
252 3htk_A Structural maintenance 44.5 54 0.0018 20.2 7.6 9 118-126 20-28 (60)
253 3q0x_A Centriole protein; cent 44.1 66 0.0022 26.1 6.8 36 115-150 169-204 (228)
254 1hlo_A Protein (transcription 43.7 35 0.0012 22.6 4.4 18 133-150 59-76 (80)
255 2ve7_C Kinetochore protein NUF 43.7 17 0.00058 29.6 3.3 20 115-134 153-172 (250)
256 2gkw_A TNF receptor-associated 43.5 44 0.0015 25.4 5.5 33 112-144 2-34 (192)
257 1gk7_A Vimentin; intermediate 43.4 49 0.0017 19.5 4.6 18 117-134 20-37 (39)
258 2ve7_A Kinetochore protein HEC 43.3 20 0.00068 30.0 3.8 31 115-145 183-213 (315)
259 2zqm_A Prefoldin beta subunit 43.2 78 0.0027 21.7 6.9 41 112-152 8-48 (117)
260 3brv_B NF-kappa-B essential mo 43.2 48 0.0016 22.2 4.9 27 121-150 12-38 (70)
261 3tnu_B Keratin, type II cytosk 42.9 90 0.0031 22.4 6.9 14 132-145 83-96 (129)
262 2zvf_A Alanyl-tRNA synthetase; 42.9 34 0.0011 25.3 4.6 30 114-143 29-58 (171)
263 3he4_B Synzip5; heterodimeric 42.8 53 0.0018 19.7 6.6 37 112-148 5-41 (46)
264 3viq_B Mating-type switching p 42.6 21 0.00071 24.9 3.1 18 112-129 10-27 (85)
265 3ni0_A Bone marrow stromal ant 42.6 89 0.003 22.2 6.6 22 130-151 66-87 (99)
266 2zdi_C Prefoldin subunit alpha 42.6 43 0.0015 24.7 5.2 37 112-148 107-143 (151)
267 3rrk_A V-type ATPase 116 kDa s 42.5 52 0.0018 27.1 6.2 41 112-152 94-137 (357)
268 1zme_C Proline utilization tra 41.9 24 0.00081 22.1 3.2 14 131-144 51-64 (70)
269 1lwu_C Fibrinogen gamma chain; 41.8 54 0.0018 27.8 6.2 42 111-152 13-54 (323)
270 3m0d_C TNF receptor-associated 41.6 68 0.0023 20.6 7.1 35 109-143 5-39 (65)
271 3a5t_A Transcription factor MA 41.2 0.72 2.5E-05 33.7 -4.8 35 118-152 59-93 (107)
272 2aze_B Transcription factor E2 41.2 74 0.0025 22.5 6.0 28 110-137 13-40 (106)
273 1hwt_C Protein (heme activator 41.2 11 0.00038 24.5 1.5 22 108-129 56-77 (81)
274 2dq0_A Seryl-tRNA synthetase; 41.1 1.5E+02 0.0051 25.9 9.2 30 122-151 74-103 (455)
275 3vkg_A Dynein heavy chain, cyt 41.1 1.1E+02 0.0036 33.9 9.4 46 106-151 2024-2069(3245)
276 1g6u_A Domain swapped dimer; d 41.0 59 0.002 19.7 6.6 24 111-134 21-44 (48)
277 1x4t_A Hypothetical protein LO 40.9 92 0.0031 21.9 9.8 47 107-153 29-81 (92)
278 3i00_A HIP-I, huntingtin-inter 40.9 1E+02 0.0035 22.4 7.2 48 98-145 35-82 (120)
279 2riq_A Poly [ADP-ribose] polym 40.5 69 0.0023 24.5 6.1 34 122-155 24-59 (160)
280 3ghg_A Fibrinogen alpha chain; 40.4 63 0.0022 29.5 6.7 23 128-150 114-136 (562)
281 2v4h_A NF-kappa-B essential mo 40.4 1E+02 0.0035 22.3 9.4 38 110-147 62-106 (110)
282 3q8t_A Beclin-1; autophagy, AT 40.3 90 0.0031 21.6 10.2 58 90-147 26-83 (96)
283 1ses_A Seryl-tRNA synthetase; 40.2 35 0.0012 29.7 4.9 29 122-150 69-97 (421)
284 3htk_A Structural maintenance 40.1 64 0.0022 19.9 6.4 29 118-146 27-55 (60)
285 3azd_A Short alpha-tropomyosin 40.1 8.2 0.00028 22.7 0.6 26 112-137 6-31 (37)
286 4dci_A Uncharacterized protein 40.0 1.2E+02 0.0041 23.0 7.6 18 135-152 88-105 (150)
287 3viq_A SWI5-dependent recombin 39.3 47 0.0016 24.3 4.8 13 129-141 41-53 (122)
288 4dzo_A Mitotic spindle assembl 38.5 42 0.0014 24.5 4.5 26 124-149 4-29 (123)
289 3trt_A Vimentin; cytoskeleton, 38.1 81 0.0028 20.4 9.7 36 117-152 35-70 (77)
290 3qne_A Seryl-tRNA synthetase, 38.1 1.9E+02 0.0064 25.8 9.4 30 122-151 76-105 (485)
291 2aze_A Transcription factor DP 37.4 68 0.0023 24.6 5.6 44 111-154 6-49 (155)
292 3mud_A DNA repair protein XRCC 36.9 1.2E+02 0.0042 23.6 7.1 29 106-134 138-166 (175)
293 2v66_B Nuclear distribution pr 36.7 1.2E+02 0.004 21.9 10.0 13 131-143 42-54 (111)
294 1t6f_A Geminin; coiled-coil, c 36.6 65 0.0022 18.9 5.7 28 118-145 8-35 (37)
295 1joc_A EEA1, early endosomal a 36.2 1.1E+02 0.0036 22.1 6.3 18 117-134 18-35 (125)
296 2e7s_A RAB guanine nucleotide 36.1 15 0.00051 27.7 1.6 7 140-146 105-111 (135)
297 2dq0_A Seryl-tRNA synthetase; 36.1 51 0.0018 28.9 5.4 41 110-150 69-109 (455)
298 4abm_A Charged multivesicular 35.9 98 0.0034 20.8 5.9 22 95-116 41-62 (79)
299 1ytz_I Troponin I; muscle, THI 34.7 67 0.0023 25.2 5.3 39 113-151 65-103 (182)
300 2zvf_A Alanyl-tRNA synthetase; 34.6 64 0.0022 23.7 5.1 24 124-147 32-55 (171)
301 3vlc_E Golgi to ER traffic pro 34.6 38 0.0013 24.0 3.4 24 127-150 59-82 (94)
302 3qne_A Seryl-tRNA synthetase, 34.5 65 0.0022 28.8 5.8 38 111-148 72-109 (485)
303 1zhc_A Hypothetical protein HP 34.5 87 0.003 20.7 5.2 40 112-151 19-64 (76)
304 1fmh_B General control protein 34.3 64 0.0022 18.1 5.0 25 113-137 4-28 (33)
305 3tnu_A Keratin, type I cytoske 34.3 80 0.0027 22.8 5.4 13 132-144 85-97 (131)
306 1lq7_A Alpha3W; three helix bu 34.3 51 0.0018 21.2 3.8 38 113-150 5-44 (67)
307 2yo3_A General control protein 34.2 47 0.0016 27.7 4.5 38 112-149 225-262 (268)
308 3coq_A Regulatory protein GAL4 34.1 43 0.0015 21.8 3.6 20 110-129 45-64 (89)
309 3q4f_C DNA repair protein XRCC 33.9 42 0.0014 26.5 4.0 26 108-133 159-184 (186)
310 4ati_A MITF, microphthalmia-as 33.8 11 0.00037 27.4 0.5 16 120-135 94-109 (118)
311 4gkw_A Spindle assembly abnorm 33.7 1.5E+02 0.0053 22.4 6.9 32 116-147 45-76 (167)
312 4b4t_K 26S protease regulatory 33.6 53 0.0018 28.6 5.0 34 112-145 58-91 (428)
313 1lwu_B Fibrinogen beta chain; 33.4 62 0.0021 27.4 5.3 30 118-147 29-58 (323)
314 1fxk_A Prefoldin; archaeal pro 32.9 1.1E+02 0.0038 20.5 6.6 41 112-152 3-43 (107)
315 4b4t_M 26S protease regulatory 32.7 30 0.001 30.3 3.3 36 115-150 37-72 (434)
316 3gp4_A Transcriptional regulat 32.5 1.4E+02 0.0048 21.6 6.6 36 113-148 84-119 (142)
317 4e61_A Protein BIM1; EB1-like 31.9 98 0.0034 22.2 5.4 31 102-132 10-40 (106)
318 2xv5_A Lamin-A/C; structural p 31.9 1.1E+02 0.0039 20.3 8.2 44 105-148 7-57 (74)
319 3he5_A Synzip1; heterodimeric 31.5 89 0.003 18.9 5.4 23 119-141 5-27 (49)
320 1rtm_1 Mannose-binding protein 31.4 56 0.0019 23.1 4.1 20 118-137 5-24 (149)
321 1f5n_A Interferon-induced guan 31.2 3E+02 0.01 24.9 11.1 15 139-153 568-582 (592)
322 1wt6_A Myotonin-protein kinase 31.2 1.3E+02 0.0044 20.7 8.0 31 121-151 42-72 (81)
323 1pyi_A Protein (pyrimidine pat 30.9 41 0.0014 22.4 3.1 14 111-124 49-62 (96)
324 4g1a_A AQ-C16C19 peptide; heli 30.9 18 0.00062 20.3 1.0 25 113-137 3-27 (32)
325 3kqg_A Langerin, C-type lectin 30.7 47 0.0016 24.3 3.7 17 130-146 22-38 (182)
326 4b4t_M 26S protease regulatory 30.4 58 0.002 28.5 4.7 33 113-145 42-74 (434)
327 2q6q_A Spindle POLE BODY compo 30.0 55 0.0019 22.0 3.5 41 108-148 15-55 (74)
328 1gk4_A Vimentin; intermediate 30.0 1.2E+02 0.0043 20.2 7.8 28 109-136 25-52 (84)
329 1yhn_B RILP, RAB interacting l 29.9 1E+02 0.0034 20.3 4.7 29 119-147 5-33 (65)
330 2lw1_A ABC transporter ATP-bin 29.8 86 0.0029 21.1 4.7 39 110-148 29-73 (89)
331 3lss_A Seryl-tRNA synthetase; 29.8 1.5E+02 0.0053 26.3 7.5 27 126-152 113-139 (484)
332 3onj_A T-snare VTI1; helix, HA 29.5 1.4E+02 0.0047 20.5 6.6 43 110-152 48-94 (97)
333 3tnu_A Keratin, type I cytoske 29.1 1.6E+02 0.0055 21.1 7.8 35 110-144 77-111 (131)
334 3tnu_B Keratin, type II cytosk 28.7 1.6E+02 0.0055 21.0 7.8 34 111-144 76-109 (129)
335 1avy_A Fibritin, gpwac M; bact 28.5 1.4E+02 0.0046 20.1 5.9 34 112-145 10-43 (74)
336 2oto_A M protein; helical coil 28.2 1.8E+02 0.0061 21.4 7.6 22 126-147 52-73 (155)
337 1joc_A EEA1, early endosomal a 27.9 1.7E+02 0.0057 21.0 7.4 34 111-144 19-52 (125)
338 1fzc_C Fibrin; blood coagulati 27.9 54 0.0018 27.8 4.0 35 114-148 15-49 (319)
339 1a93_A Coiled coil, LZ, MYC pr 27.7 93 0.0032 17.9 4.7 26 125-150 8-33 (34)
340 2z5i_A TM, general control pro 27.6 1.1E+02 0.0039 18.9 7.0 36 115-150 10-45 (52)
341 1q08_A Zn(II)-responsive regul 27.6 1.3E+02 0.0046 19.7 6.2 32 119-150 41-72 (99)
342 1x8y_A Lamin A/C; structural p 27.3 1.4E+02 0.0049 20.0 7.8 24 111-134 29-52 (86)
343 1ses_A Seryl-tRNA synthetase; 27.3 2.4E+02 0.0081 24.3 8.1 42 107-148 61-102 (421)
344 3tq7_B Microtubule-associated 26.9 64 0.0022 22.1 3.5 16 112-127 10-25 (82)
345 2l5g_B Putative uncharacterize 26.7 1.1E+02 0.0038 18.5 5.0 17 132-148 17-33 (42)
346 1gk4_A Vimentin; intermediate 26.3 1.5E+02 0.005 19.8 7.0 40 108-147 31-77 (84)
347 2xzr_A Immunoglobulin-binding 26.2 1.8E+02 0.0062 20.8 9.2 47 106-152 58-104 (114)
348 1uuj_A Platelet-activating fac 25.6 27 0.00092 24.4 1.4 14 115-128 63-76 (88)
349 1ca9_A TRAF2, protein (TNF rec 25.4 88 0.003 23.4 4.5 32 112-143 5-36 (192)
350 3t97_C Nuclear pore glycoprote 25.2 1.4E+02 0.0049 19.3 5.7 45 110-154 12-56 (64)
351 3swk_A Vimentin; cytoskeleton, 25.0 1.6E+02 0.0055 19.9 5.3 17 128-144 67-83 (86)
352 1wdg_A E2 glycoprotein; MHV, c 24.8 1.4E+02 0.0048 20.8 4.9 39 122-160 20-58 (94)
353 1buu_A Protein (mannose-bindin 24.7 84 0.0029 22.8 4.1 20 118-137 24-43 (168)
354 3e98_A GAF domain of unknown f 24.3 1.6E+02 0.0055 23.6 6.1 31 109-139 78-111 (252)
355 2i1j_A Moesin; FERM, coiled-co 23.9 65 0.0022 29.1 3.9 18 112-129 337-354 (575)
356 4ghu_A TNF receptor-associated 23.8 1.2E+02 0.004 23.2 5.0 31 114-144 4-34 (198)
357 3ni0_A Bone marrow stromal ant 23.4 2E+02 0.0069 20.3 6.9 29 108-136 58-86 (99)
358 4b4t_L 26S protease subunit RP 23.4 99 0.0034 27.0 4.9 34 111-144 66-99 (437)
359 1a92_A Delta antigen; leucine 22.9 1.5E+02 0.005 18.5 5.4 26 118-143 15-40 (50)
360 3iyn_Q Protein IX, PIX, hexon- 22.8 1.5E+02 0.005 22.1 5.0 26 112-137 100-125 (140)
361 3mtu_E Head morphogenesis prot 22.2 1.9E+02 0.0065 19.6 7.3 27 113-139 33-59 (77)
362 1j1d_B Troponin T, TNT; THIN f 22.2 2.2E+02 0.0074 20.2 6.7 23 121-143 46-68 (106)
363 4i0x_B ESAT-6-like protein MAB 22.0 1.8E+02 0.0063 19.4 5.9 13 112-124 34-46 (103)
364 3lss_A Seryl-tRNA synthetase; 21.9 4.2E+02 0.014 23.5 10.1 38 111-148 100-142 (484)
365 1dkg_A Nucleotide exchange fac 21.9 2.1E+02 0.0073 22.2 6.2 12 119-130 62-73 (197)
366 1rtm_1 Mannose-binding protein 21.8 1.2E+02 0.004 21.3 4.3 22 110-131 4-25 (149)
367 3haj_A Human pacsin2 F-BAR; pa 21.7 3.9E+02 0.013 23.0 9.1 61 89-149 189-250 (486)
368 3twe_A Alpha4H; unknown functi 21.7 1.1E+02 0.0036 16.5 3.8 11 136-146 13-23 (27)
369 3pjs_K KCSA, voltage-gated pot 21.7 2.3E+02 0.0078 20.8 6.1 25 107-131 135-159 (166)
370 2ieq_A S glycoprotein, spike g 21.7 1E+02 0.0034 22.3 3.8 27 111-137 77-103 (109)
371 3i5c_A Fusion of general contr 21.6 94 0.0032 22.4 3.9 26 112-137 2-27 (206)
372 3jsv_C NF-kappa-B essential mo 21.6 2.2E+02 0.0074 20.0 8.3 29 95-123 8-36 (94)
373 3kin_B Kinesin heavy chain; mo 21.5 1.9E+02 0.0066 20.5 5.4 15 111-125 97-111 (117)
374 1bb1_B Designed, thermostable 21.2 1.3E+02 0.0043 17.2 5.4 30 120-149 5-34 (36)
375 3plt_A Sphingolipid long chain 21.1 2.1E+02 0.0072 23.2 6.1 22 93-114 97-119 (234)
376 3t97_B Nuclear pore complex pr 21.0 1.8E+02 0.0063 19.0 5.8 19 110-128 10-28 (65)
377 1t7s_A BAG-1 cochaperone; stru 20.8 1.5E+02 0.0051 22.2 4.8 22 131-152 108-129 (137)
378 3mtu_A Tropomyosin alpha-1 cha 20.2 1.9E+02 0.0066 19.0 6.9 19 120-138 12-30 (75)
379 2p4v_A Transcription elongatio 20.1 2.1E+02 0.0073 21.2 5.6 27 129-155 51-77 (158)
No 1
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.67 E-value=3.1e-16 Score=105.24 Aligned_cols=59 Identities=36% Similarity=0.590 Sum_probs=57.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 89 KRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHIL 147 (168)
Q Consensus 89 kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L 147 (168)
|+.+|+++||+||++||+||++|+.+||.++..|+.+|..|..+|..|..|+..|+++|
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999999999999999999999999999987
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.66 E-value=4.6e-16 Score=105.21 Aligned_cols=61 Identities=30% Similarity=0.474 Sum_probs=58.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 89 KRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKN 149 (168)
Q Consensus 89 kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~ 149 (168)
|+.+|+++||+||++||+||++|+.+|+.+|..|+.+|..|..+|..|..|+..|+.+|..
T Consensus 2 kr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~~ 62 (63)
T 2wt7_A 2 KRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILAA 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6788999999999999999999999999999999999999999999999999999999864
No 3
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.62 E-value=7.4e-16 Score=103.78 Aligned_cols=60 Identities=32% Similarity=0.490 Sum_probs=53.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 90 RLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKN 149 (168)
Q Consensus 90 r~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~ 149 (168)
..+|+++||+||++||+||++|+.+||.+|..|+.+|..|..+|..|..|+..|+++|..
T Consensus 2 ~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~~ 61 (62)
T 1jnm_A 2 AERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVMN 61 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457789999999999999999999999999999999999999999999999999999864
No 4
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=99.61 E-value=2e-15 Score=102.19 Aligned_cols=62 Identities=34% Similarity=0.557 Sum_probs=54.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 89 KRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 89 kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
|+.+++++||+||++||+||++++.+|+.++..|+.+|..|+.+|..|+.|+.+|+++|.++
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e~ 63 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEEV 63 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 56788899999999999999999999999999999999999999999999999999999764
No 5
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=99.51 E-value=1.1e-13 Score=99.37 Aligned_cols=74 Identities=20% Similarity=0.306 Sum_probs=62.7
Q ss_pred CCCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 030957 82 SPADKENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTASRR 155 (168)
Q Consensus 82 ~~~e~e~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~~ 155 (168)
..+.++++++.|+.+|++||++||+++++...+++.++..|+.+|..|+.+|..|..|+..|+.+|..+...+-
T Consensus 8 ~~dk~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~~~ 81 (87)
T 1hjb_A 8 TVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEPLL 81 (87)
T ss_dssp --CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred CcCcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHh
Confidence 33445677888899999999999999999999999999999999999999999999999999999998776544
No 6
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.50 E-value=4.1e-14 Score=93.45 Aligned_cols=51 Identities=43% Similarity=0.632 Sum_probs=47.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 89 KRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNE 139 (168)
Q Consensus 89 kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~E 139 (168)
|+.+|+++||+||++||.||++|+++||.+|..|+.+|..|..++..|..+
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999998888754
No 7
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=99.45 E-value=1.9e-13 Score=96.26 Aligned_cols=69 Identities=22% Similarity=0.347 Sum_probs=61.0
Q ss_pred CCCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 82 SPADKENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 82 ~~~e~e~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
..+.+++.++.|+.+|++||++||+++++...+++.++..|+.+|..|+.+|..|..|+..|+++|.++
T Consensus 8 ~~dk~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q~ 76 (78)
T 1gu4_A 8 TVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL 76 (78)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred CcccCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 444556778888899999999999999999999999999999999999999999999999999988654
No 8
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.36 E-value=1.3e-12 Score=88.44 Aligned_cols=53 Identities=26% Similarity=0.399 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 87 ENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNE 139 (168)
Q Consensus 87 e~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~E 139 (168)
+++..+++.+||+||++||+||++|+.+|+.+|..|+.+|..|..+|..|..+
T Consensus 7 ~d~~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 7 SDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556789999999999999999999999999999999988777776654
No 9
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=99.17 E-value=1.3e-10 Score=80.17 Aligned_cols=59 Identities=29% Similarity=0.316 Sum_probs=47.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 91 LKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKN 149 (168)
Q Consensus 91 ~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~ 149 (168)
.+|+.+||.|++.||+||++||.+||.+|.+|+..|..|..++..|..++..|...|..
T Consensus 10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999887777666666666666666555543
No 10
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=99.04 E-value=4.3e-10 Score=69.79 Aligned_cols=41 Identities=88% Similarity=1.152 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKN 149 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~ 149 (168)
|+|+.+||.++++|+..|.+|..+|..|++||+||||.|++
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl~n 42 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLSTLQNENQMLRHILKN 42 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcC
Confidence 68999999999999999999999999999999999999963
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=98.76 E-value=8.6e-08 Score=68.93 Aligned_cols=65 Identities=23% Similarity=0.275 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 87 ENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 87 e~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
..|.+||..+||.+|+-||.||...+..||.++..|..+...|+.++..+..|...+++.+..+.
T Consensus 25 ~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L~ 89 (90)
T 2wt7_B 25 RLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKLA 89 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56788899999999999999999999999999999999999999999999999999999998764
No 12
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.62 E-value=7.1e-10 Score=82.15 Aligned_cols=66 Identities=23% Similarity=0.281 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 86 KENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 86 ~e~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
.+.|.+||..+||.+|+.||.||.+.+.+||.++..|..+...|..+...|..|...|+..+..+.
T Consensus 34 ~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~k~e~L~ 99 (107)
T 3a5t_A 34 IQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEALQ 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSSCC----
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366889999999999999999999999999988888777777777777777776666665555544
No 13
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=97.48 E-value=4.6e-05 Score=54.56 Aligned_cols=31 Identities=19% Similarity=0.404 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 030957 87 ENKRLKRLLRNRVSAQQARERKKAYLNELET 117 (168)
Q Consensus 87 e~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~ 117 (168)
..+.++|..+||+||++||+||.+.++.|+.
T Consensus 60 ~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~ 90 (92)
T 1skn_P 60 LIRKIRRRGKNKVAARTCRQRRTDRHDKMSH 90 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 4677888999999999999999999888763
No 14
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=96.55 E-value=0.016 Score=37.89 Aligned_cols=38 Identities=24% Similarity=0.353 Sum_probs=26.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 93 RLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELD 130 (168)
Q Consensus 93 R~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~ 130 (168)
++.+||+|+++||.|=+..++....-...-..||..|+
T Consensus 5 kryknr~asrk~rakfkn~lqh~r~vaaaks~en~rlr 42 (63)
T 2c9l_Y 5 KRYKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRLR 42 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHH
Confidence 35899999999999988877665554444444444433
No 15
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=96.23 E-value=0.0065 Score=35.84 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQ 137 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~ 137 (168)
++|.+||.+|++|-.+|..|..+|..|+
T Consensus 1 eRMnQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 1 XRMXQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3588999999999999988666555543
No 16
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=96.17 E-value=0.0068 Score=36.17 Aligned_cols=30 Identities=27% Similarity=0.494 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 111 YLNELETRVKDLERKNSELDERLSTLQNEN 140 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~~En 140 (168)
+|.+||.+|++|..+|..|..+|..|+..+
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 578999999999999999777776666543
No 17
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=96.06 E-value=0.0074 Score=35.42 Aligned_cols=27 Identities=30% Similarity=0.524 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 111 YLNELETRVKDLERKNSELDERLSTLQ 137 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~ 137 (168)
+|.+||.+|++|-.+|..|..+|..|.
T Consensus 1 RM~QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 1 RMAQLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 367899999999999988666665554
No 18
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=95.97 E-value=0.018 Score=34.38 Aligned_cols=29 Identities=21% Similarity=0.424 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQN 138 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~ 138 (168)
++|.+||.+|++|-.+|..|..+|..|+.
T Consensus 1 eRMnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 1 XKVKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 35789999999999999887666665543
No 19
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=95.85 E-value=0.012 Score=34.58 Aligned_cols=28 Identities=4% Similarity=0.148 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQ 137 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~ 137 (168)
++|.+||.+|++|-.+|..|..+|..|+
T Consensus 1 eRMnQLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 1 XRMXQIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3588999999999999988666555543
No 20
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=95.52 E-value=0.018 Score=33.94 Aligned_cols=28 Identities=11% Similarity=0.375 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQ 137 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~ 137 (168)
++|.+||.+|++|-.+|..|..+|..|.
T Consensus 1 eRMnQLEdKvEeLl~~~~~L~~EV~RLk 28 (34)
T 2bni_A 1 XRMKQIEDKLEEILSKGHHICNELARIK 28 (34)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHccHHHHHHHHHHH
Confidence 3578999999999999988666555543
No 21
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=95.43 E-value=0.031 Score=32.71 Aligned_cols=26 Identities=12% Similarity=0.386 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQ 137 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~ 137 (168)
|.+||.+|++|-.+|..|..+|..|+
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 78999999999999988666555543
No 22
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=95.31 E-value=0.0011 Score=47.43 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Q 030957 87 ENKRLKRLLRNRVSAQQARERKKA 110 (168)
Q Consensus 87 e~kr~rR~~rNR~AA~~sR~RKk~ 110 (168)
..+.+||+-+||+||+.||+||.+
T Consensus 64 lIrdiRRRgKNKvAAqnCRKRKld 87 (91)
T 2kz5_A 64 LVRDIRRRGKNKVAAQNYRKRKLE 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHH
Confidence 467788999999999999999854
No 23
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=95.29 E-value=0.024 Score=33.39 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 111 YLNELETRVKDLERKNSELDERLSTLQ 137 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~ 137 (168)
+|.+||.+|++|-.+|..|..+|..|+
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~ 28 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLA 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 578999999999999988666555544
No 24
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=95.19 E-value=0.044 Score=35.28 Aligned_cols=33 Identities=21% Similarity=0.346 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 117 TRVKDLERKNSELDERLSTLQNENQMLRHILKN 149 (168)
Q Consensus 117 ~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~ 149 (168)
..++.|..+|.+|+.++..|..++..|+.+|.+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578889999999999999999999999998864
No 25
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=95.13 E-value=0.029 Score=33.09 Aligned_cols=27 Identities=11% Similarity=0.343 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 111 YLNELETRVKDLERKNSELDERLSTLQ 137 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~ 137 (168)
+|.+||.+|++|-.+|..|..+|..|.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 478899999999988888655555443
No 26
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=95.12 E-value=0.045 Score=32.03 Aligned_cols=26 Identities=12% Similarity=0.222 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQ 137 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~ 137 (168)
|.+||.+|++|-.+|..|..+|..|.
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 68899999988888888655555443
No 27
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=94.75 E-value=0.091 Score=32.50 Aligned_cols=37 Identities=30% Similarity=0.439 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q 030957 111 YLNELETRVKDLERKNSELDE-------RLSTLQNENQMLRHIL 147 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~-------~v~~L~~En~~Lr~~L 147 (168)
.+.+||.+|..|+.+|..|+. -|..|+.|+..||..+
T Consensus 4 lvaqlenevaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 456788888888888888765 4566777777777665
No 28
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=94.47 E-value=0.047 Score=37.15 Aligned_cols=36 Identities=17% Similarity=0.301 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLR 144 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr 144 (168)
...+.+|+.....|..+|..|+.+|..|..||..|+
T Consensus 35 E~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 35 ETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 445678888888888889999999999988888765
No 29
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=94.33 E-value=0.083 Score=31.10 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 111 YLNELETRVKDLERKNSELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
.|.+||.+|++|-.+|.. |++|...|+.+|.
T Consensus 2 RMnQledKvEel~~~~~~-------l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYH-------NANELARVAKLLG 32 (34)
T ss_dssp CHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHH-------HHHHHHHHHHHhc
Confidence 478899999988888777 5555555666653
No 30
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=94.14 E-value=0.092 Score=36.72 Aligned_cols=41 Identities=22% Similarity=0.407 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcc
Q 030957 112 LNELETRVKDLERKNSELDERLST-------LQNENQMLRHILKNTTA 152 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~-------L~~En~~Lr~~L~~~~~ 152 (168)
|.-|+.++++|..+|..|..++.. |..||..|++.......
T Consensus 22 I~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~ 69 (81)
T 2jee_A 22 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666665555554 77788888877665443
No 31
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=94.08 E-value=0.21 Score=34.42 Aligned_cols=47 Identities=26% Similarity=0.226 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTASRRG 156 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~~~ 156 (168)
++|.+||.++..++.-..+|...|...+.++..|..+|..+...+..
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999998888888888777777777777777777765544
No 32
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=93.84 E-value=0.34 Score=30.93 Aligned_cols=42 Identities=26% Similarity=0.358 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
..+.+|..++..|...|..|-..+.....++..|+.+|..+.
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445678889999999999999999999999999999998775
No 33
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=93.55 E-value=0.15 Score=29.13 Aligned_cols=29 Identities=28% Similarity=0.486 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNEN 140 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En 140 (168)
+.+||.+|...+.+|-+|..++.+|+.|+
T Consensus 3 vaqlekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 56899999999999999999999998774
No 34
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=93.04 E-value=0.13 Score=35.19 Aligned_cols=35 Identities=11% Similarity=0.341 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
.||..|+.++. .|..+++.|..+|..|+++|..+.
T Consensus 47 ~YI~~L~~~~~-------~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 47 EYIQYMRRKNH-------THQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555555444 555666667777777777776654
No 35
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=93.03 E-value=0.42 Score=30.58 Aligned_cols=41 Identities=27% Similarity=0.459 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhcc
Q 030957 112 LNELETRVKDLERKNSELDERLS-------TLQNENQMLRHILKNTTA 152 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~-------~L~~En~~Lr~~L~~~~~ 152 (168)
.++|-.+|+.|..||..|++++. .|+.|---++..|+.+..
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq~ 52 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQG 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHcc
Confidence 46788889999999999887654 688888888888887754
No 36
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=91.95 E-value=0.36 Score=33.23 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 108 KKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 108 Kk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
-.+||..|+.+...|..++.. |..++..|+++|.
T Consensus 45 A~~yI~~L~~~~~~l~~e~~~-------L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 45 AKLHIKKLEDSDRKAVHQIDQ-------LQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHh
Confidence 347777777777766666555 5555555555554
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.93 E-value=1.3 Score=39.17 Aligned_cols=53 Identities=19% Similarity=0.283 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 030957 102 QQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTASR 154 (168)
Q Consensus 102 ~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~ 154 (168)
.+..+.+++.++.|+.++..|+......+.++..|..|+..+++.|+++-...
T Consensus 529 ~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 529 RTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344555666777788888888888888888889999888888888776543
No 38
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=91.87 E-value=0.68 Score=31.54 Aligned_cols=23 Identities=13% Similarity=-0.009 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 030957 128 ELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 128 ~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
.|..++..|..|+..|+.....+
T Consensus 51 ~L~~~~~~l~~e~~~L~~~~~~L 73 (83)
T 1nkp_B 51 YMRRKNHTHQQDIDDLKRQNALL 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 39
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=91.71 E-value=0.15 Score=28.11 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 119 VKDLERKNSELDERLSTLQNENQMLR 144 (168)
Q Consensus 119 v~~Le~eN~~L~~~v~~L~~En~~Lr 144 (168)
+..|.+.|..|+++|..|+-|+..|.
T Consensus 2 irrlkqknarlkqeiaaleyeiaale 27 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIAALE 27 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHhc
Confidence 44677888888888888888887764
No 40
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=91.51 E-value=0.35 Score=33.77 Aligned_cols=30 Identities=17% Similarity=0.284 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 122 LERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 122 Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
|+.++..|..++..|..+|..|+.+|..+.
T Consensus 57 L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 57 VQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444555555667777777777777664
No 41
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=91.13 E-value=0.3 Score=40.69 Aligned_cols=44 Identities=25% Similarity=0.338 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
...+.+|+.++..|..+|..|...+..++.|+..|+.+|..+..
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44577889999999999999999999999999999999988863
No 42
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=90.92 E-value=1.3 Score=32.96 Aligned_cols=37 Identities=27% Similarity=0.414 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
+++|+.++..|..+...+..+|+.|+.+|..|...+.
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~ 109 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIA 109 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhh
Confidence 6666666666666666666666666666666665553
No 43
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=90.75 E-value=0.41 Score=32.92 Aligned_cols=30 Identities=13% Similarity=0.269 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 106 ERKKAYLNELETRVKDLERKNSELDERLST 135 (168)
Q Consensus 106 ~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~ 135 (168)
..=+.....|+.+...|..+|..|+.++..
T Consensus 50 ~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 50 KKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444455666666666666666666554
No 44
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=90.53 E-value=0.41 Score=32.69 Aligned_cols=36 Identities=28% Similarity=0.302 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 108 KKAYLNELETRVKDLERKNSELDERLSTLQNENQML 143 (168)
Q Consensus 108 Kk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~L 143 (168)
|-+.+...+..++.|+.+..++...|..|+.++..+
T Consensus 31 K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 31 KIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444445555554444444444444444444433
No 45
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=90.52 E-value=0.6 Score=27.49 Aligned_cols=29 Identities=21% Similarity=0.455 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 122 LERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 122 Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
+..+|......|+.|..+|..|..++..+
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 34566777777777777777777776543
No 46
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=90.11 E-value=3.3 Score=28.98 Aligned_cols=53 Identities=26% Similarity=0.268 Sum_probs=36.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 96 RNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 96 rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
+-|..++.-=.--...+.+|+.+...|..++..|..++..|..-...|...|.
T Consensus 29 rSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~~~ 81 (87)
T 1hjb_A 29 KSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEPLL 81 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHh
Confidence 44544444445566778999999999999999999999999877766665543
No 47
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=89.68 E-value=1.6 Score=30.28 Aligned_cols=37 Identities=19% Similarity=0.286 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 108 KKAYLNELETRVKDLERKNSELDERLSTLQNENQMLR 144 (168)
Q Consensus 108 Kk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr 144 (168)
--+||..|+.+...|..+...|+.+...|..++..|+
T Consensus 50 A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 50 ATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4589999999999988888888888888888888775
No 48
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=89.56 E-value=1.4 Score=30.67 Aligned_cols=31 Identities=19% Similarity=0.319 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQM 142 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~ 142 (168)
++.||.+|..+-..+.-|+-+|+.|..+|..
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~ 38 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNS 38 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555444333333333333333333
No 49
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=89.51 E-value=3.7 Score=28.69 Aligned_cols=29 Identities=21% Similarity=0.245 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 123 ERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 123 e~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
+.+......+|..|+.++..++..|.++.
T Consensus 50 ~~el~~h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 50 ENEISHHAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44445555566666666666666666553
No 50
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=88.85 E-value=0.96 Score=26.82 Aligned_cols=32 Identities=31% Similarity=0.381 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 118 RVKDLERKNSELDERLSTLQNENQMLRHILKN 149 (168)
Q Consensus 118 ~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~ 149 (168)
++.+|+....+|..+...|++|...|+.+|..
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 46788888888888888888888888888764
No 51
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=88.84 E-value=0.74 Score=31.56 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 127 SELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 127 ~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
..|+.++..|..|+..|+..+++..
T Consensus 53 ~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 53 RFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4566666677777777777666543
No 52
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=88.73 E-value=1.6 Score=28.80 Aligned_cols=30 Identities=40% Similarity=0.535 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q 030957 115 LETRVKDLERKNSEL-------DERLSTLQNENQMLR 144 (168)
Q Consensus 115 LE~~v~~Le~eN~~L-------~~~v~~L~~En~~Lr 144 (168)
-|.++..|.+-|..| +..|..|+.||..||
T Consensus 25 SeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 25 SEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 345555555555554 456666777777666
No 53
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=88.56 E-value=1.1 Score=31.69 Aligned_cols=39 Identities=21% Similarity=0.321 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHIL 147 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L 147 (168)
..||.+|...+..+..++..|..++..|..+...|+..|
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~KL 93 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL 93 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 456666666666666666666666666666666666543
No 54
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=88.56 E-value=2.4 Score=33.23 Aligned_cols=49 Identities=16% Similarity=0.418 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 102 QQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 102 ~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
++.|.+-.+.+.+|+.++..|..+...++..+..+..+|..|-..|..+
T Consensus 82 r~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~l 130 (168)
T 3o0z_A 82 RRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHS 130 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777888888888887777777766666666666666555443
No 55
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=88.37 E-value=0.45 Score=32.73 Aligned_cols=30 Identities=33% Similarity=0.442 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 118 RVKDLERKNSELDERLSTLQNENQMLRHIL 147 (168)
Q Consensus 118 ~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L 147 (168)
+|+.|.....+|..++..|+.||..||...
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 466677777777777778888999998764
No 56
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=88.28 E-value=2.6 Score=29.40 Aligned_cols=31 Identities=19% Similarity=0.378 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 118 RVKDLERKNSELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 118 ~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
+...|-..+..|..+|..|..+|..|+.+..
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk~en~eL~elae 77 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLKKENKELAEVAE 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555443
No 57
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=88.11 E-value=1.4 Score=31.81 Aligned_cols=25 Identities=36% Similarity=0.416 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 128 ELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 128 ~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
+++..++.|+.||..||..|..+..
T Consensus 72 ~~~~~~e~Lq~E~erLr~~v~~lEe 96 (100)
T 1go4_E 72 RLREDHSQLQAECERLRGLLRAMER 96 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567788888888888888877654
No 58
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=88.05 E-value=0.83 Score=25.70 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 113 NELETRVKDLERKNSELDERLSTLQN 138 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~L~~~v~~L~~ 138 (168)
++|..-+..|+.+|.+|+.+++.|..
T Consensus 2 dqlnallasleaenkqlkakveella 27 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELLA 27 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777888888877777654
No 59
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=87.78 E-value=5.2 Score=27.66 Aligned_cols=42 Identities=14% Similarity=0.152 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
.-+-+|..++..|..+...|+-+|+.+..++..|+++..++.
T Consensus 20 q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y 61 (83)
T 2xdj_A 20 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIL 61 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 445678888889999999999999999998888888776655
No 60
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=87.51 E-value=2.5 Score=29.74 Aligned_cols=45 Identities=18% Similarity=0.289 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 108 KKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 108 Kk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
+.+.+..|+.+.+.++.+...|..++..+..+...|+..|..+-.
T Consensus 68 ~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~ 112 (117)
T 2zqm_A 68 KDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALR 112 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345566777777777888888888888888888888888877664
No 61
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=87.11 E-value=1.2 Score=26.02 Aligned_cols=30 Identities=30% Similarity=0.391 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 118 RVKDLERKNSELDERLSTLQNENQMLRHIL 147 (168)
Q Consensus 118 ~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L 147 (168)
+..+|+....+|-.+...|+.|+..|+.+|
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 345677777777777777777777777666
No 62
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=87.05 E-value=1.7 Score=24.74 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 119 VKDLERKNSELDERLSTLQNENQMLRH 145 (168)
Q Consensus 119 v~~Le~eN~~L~~~v~~L~~En~~Lr~ 145 (168)
+..|.++...|+.+|..|.-|+..|+|
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 444555555555555555555555554
No 63
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=86.98 E-value=0.81 Score=26.70 Aligned_cols=28 Identities=32% Similarity=0.362 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 120 KDLERKNSELDERLSTLQNENQMLRHIL 147 (168)
Q Consensus 120 ~~Le~eN~~L~~~v~~L~~En~~Lr~~L 147 (168)
.+|+.+..+|..+...|++|...|+..|
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 4566666677666677777777666665
No 64
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=86.92 E-value=0.99 Score=26.77 Aligned_cols=32 Identities=28% Similarity=0.322 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 118 RVKDLERKNSELDERLSTLQNENQMLRHILKN 149 (168)
Q Consensus 118 ~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~ 149 (168)
++.+|+.+..+|..+...|++|...|+..|..
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 35678888888888888888888888887754
No 65
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=86.89 E-value=0.0078 Score=42.88 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Q 030957 87 ENKRLKRLLRNRVSAQQARERKKA 110 (168)
Q Consensus 87 e~kr~rR~~rNR~AA~~sR~RKk~ 110 (168)
-.+.++|.-+||+||+.||.||..
T Consensus 64 lIrdiRRRgKNkvAAqnCRKRKld 87 (90)
T 2lz1_A 64 LIRDIRRRGKNKVAAQNCRKRKLE 87 (90)
T ss_dssp HHHHHHHHSCSCCCCCCCSCCCCS
T ss_pred HHHHHHHhhhhHHHHHHcchhhcc
Confidence 356778889999999999998753
No 66
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=86.51 E-value=1.4 Score=25.61 Aligned_cols=29 Identities=24% Similarity=0.225 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 119 VKDLERKNSELDERLSTLQNENQMLRHIL 147 (168)
Q Consensus 119 v~~Le~eN~~L~~~v~~L~~En~~Lr~~L 147 (168)
..+|+.+..+|-.+...|++|...|+.+|
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 45778888888888888888888888776
No 67
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=86.16 E-value=0.82 Score=29.40 Aligned_cols=29 Identities=21% Similarity=0.454 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQN 138 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~ 138 (168)
++++.+...+..|..+|..|+.++..|+.
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666677677777776666666554
No 68
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=85.79 E-value=3.5 Score=28.77 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030957 122 LERKNSELDERLSTLQNENQMLR 144 (168)
Q Consensus 122 Le~eN~~L~~~v~~L~~En~~Lr 144 (168)
|......+..+|..|..||..|+
T Consensus 43 Lh~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 43 LHKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444433
No 69
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=85.65 E-value=1.7 Score=25.47 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 118 RVKDLERKNSELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 118 ~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
+..+|+.+..+|-.+...|++|...|+.+|.
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 3567777777888888888888888877763
No 70
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=85.47 E-value=9.7 Score=29.31 Aligned_cols=40 Identities=20% Similarity=0.194 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKN 149 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~ 149 (168)
.-++.|..++..|.-++..|..++..|+.||..|.+++-.
T Consensus 96 K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~ 135 (152)
T 3a7p_A 96 KNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLK 135 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777888888888888999999888877643
No 71
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=85.23 E-value=1.4 Score=28.90 Aligned_cols=26 Identities=15% Similarity=0.287 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 126 NSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 126 N~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
...|..+|..|..+|..|+..+..+.
T Consensus 32 ~~~Le~~v~~L~~eN~~L~~ev~~Lr 57 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLENEVARLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555444
No 72
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=85.23 E-value=3.1 Score=28.77 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 122 LERKNSELDERLSTLQNENQMLRHIL 147 (168)
Q Consensus 122 Le~eN~~L~~~v~~L~~En~~Lr~~L 147 (168)
|-.+...+..+|..|+.||..|+..+
T Consensus 39 Lh~~ie~~~eEi~~LkeEN~~L~el~ 64 (79)
T 2zxx_A 39 LHKEIEQKDSEIARLRKENKDLAEVA 64 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433
No 73
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=85.09 E-value=1.7 Score=27.75 Aligned_cols=30 Identities=27% Similarity=0.311 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 030957 125 KNSELDERLSTLQNENQMLRHILKNTTASR 154 (168)
Q Consensus 125 eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~ 154 (168)
....|..+|..|+.||..|+.+|..+....
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677788888889999988888877543
No 74
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=84.42 E-value=3.7 Score=33.13 Aligned_cols=36 Identities=17% Similarity=0.421 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
|+.|+.++..|+.+|.+|+. |..+.++|-..|..|.
T Consensus 124 ie~l~eEi~~LkeEn~eLke----Lae~~q~la~vi~~l~ 159 (209)
T 2wvr_A 124 IEQKDNEIARLKKENKELAE----VAEHVQYMAELIERLN 159 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence 34444444444444444443 2333344444554444
No 75
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=84.28 E-value=6 Score=29.17 Aligned_cols=51 Identities=16% Similarity=0.225 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 102 QQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 102 ~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
......-..||.+|+.+|..|+.++.+-+........||..||..+..+..
T Consensus 32 e~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~ 82 (120)
T 3i00_A 32 ENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRR 82 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666778999999999999999999988888888999999998887643
No 76
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=84.27 E-value=2.1 Score=24.88 Aligned_cols=30 Identities=20% Similarity=0.345 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 119 VKDLERKNSELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 119 v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
..+|+.+..+|-.+-..|++|...|+.+|.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 356677777777777777777777777663
No 77
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=84.16 E-value=8 Score=26.43 Aligned_cols=43 Identities=28% Similarity=0.350 Sum_probs=30.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 96 RNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQN 138 (168)
Q Consensus 96 rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~ 138 (168)
+-|+.++.-=.--...+.+|+.+...|..++..|..++..|..
T Consensus 29 rSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 29 KSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455554444555667788888888888888888888887763
No 78
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=84.06 E-value=2.1 Score=30.90 Aligned_cols=28 Identities=29% Similarity=0.420 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 111 YLNELETRVKDLERKNSELDERLSTLQN 138 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~~ 138 (168)
.+..|..+++.|+.+|..|+++++.|+.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~ 40 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEA 40 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666665555555443
No 79
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=83.85 E-value=11 Score=28.11 Aligned_cols=37 Identities=11% Similarity=0.157 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 114 ELETRVKDLERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 114 ~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
.|-.++..+.-++..+..++..|..++..|..++..+
T Consensus 93 ~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 93 DLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444555554444443
No 80
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=83.75 E-value=1.3 Score=30.40 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030957 109 KAYLNELETRVKDLERKNSELDE 131 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~~ 131 (168)
|+.|.+|+.++..|+.||.-|+.
T Consensus 21 Ke~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 21 KEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777776664
No 81
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=83.73 E-value=2.1 Score=26.20 Aligned_cols=24 Identities=33% Similarity=0.392 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 110 AYLNELETRVKDLERKNSELDERL 133 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v 133 (168)
..+.+||.++..|+.||.-|++.+
T Consensus 17 ~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 17 NKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHh
Confidence 345788888888888888887755
No 82
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=83.64 E-value=9.7 Score=32.87 Aligned_cols=51 Identities=10% Similarity=0.061 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 101 AQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 101 A~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
-+.-|++.+.+++....+++.|.++|+.|+..+..+..+...-++.++.+.
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (487)
T 3oja_A 426 QQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELV 476 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHH
Confidence 344555666677777777777777777777777777777666666665543
No 83
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=83.57 E-value=4.6 Score=27.96 Aligned_cols=41 Identities=10% Similarity=0.261 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKN 149 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~ 149 (168)
.+.+..|+.+.+.++.+...|..++..++.+...|+..|..
T Consensus 64 ~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 64 DELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666667777777777777777766654
No 84
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=83.50 E-value=1.6 Score=25.56 Aligned_cols=31 Identities=29% Similarity=0.498 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 118 RVKDLERKNSELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 118 ~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
+..+|+.+..+|-.+...|++|...|+..|.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKKLLG 32 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence 3456777777777777777777777777663
No 85
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=83.45 E-value=3.5 Score=30.55 Aligned_cols=43 Identities=19% Similarity=0.241 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCC
Q 030957 116 ETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTASRRGGS 158 (168)
Q Consensus 116 E~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~~~~~ 158 (168)
+.+|++|+.|+..|..++..+..|...||.....+...+....
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~~ 112 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIADKK 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhhcc
Confidence 4458888888888888888888899999888887776655443
No 86
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=83.35 E-value=6.9 Score=38.28 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 030957 129 LDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 129 L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
|..+|..|+.||..|++++.++.
T Consensus 1021 L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1021 TEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666665554
No 87
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=83.31 E-value=9.2 Score=26.50 Aligned_cols=48 Identities=19% Similarity=0.340 Sum_probs=27.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 96 RNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQML 143 (168)
Q Consensus 96 rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~L 143 (168)
+.+.+-+.-=.+=+.-...++.++.+.+..|..|..++..|+.+...|
T Consensus 24 qAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 24 LTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344445555666677777777777666666666555554
No 88
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=83.09 E-value=4.9 Score=27.81 Aligned_cols=46 Identities=11% Similarity=0.148 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 103 QARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 103 ~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
++---=...++.|..+|..|...+.++.-+|..|......+-.-|.
T Consensus 20 q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD 65 (83)
T 2xdj_A 20 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQID 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334556678888889988888888888888888776655555443
No 89
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=82.96 E-value=4.9 Score=30.19 Aligned_cols=21 Identities=10% Similarity=0.105 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 030957 130 DERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 130 ~~~v~~L~~En~~Lr~~L~~~ 150 (168)
+.+++.+..++..|+..+..+
T Consensus 102 ~~k~e~~~~e~~~l~~~~~~l 122 (138)
T 3hnw_A 102 QIKAESSAKEIKELKSEINKY 122 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444433
No 90
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=82.89 E-value=2.1 Score=25.13 Aligned_cols=25 Identities=24% Similarity=0.528 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 113 NELETRVKDLERKNSELDERLSTLQ 137 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~L~~~v~~L~ 137 (168)
......+.+|+.+|..|..+|..|+
T Consensus 10 ~a~qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 10 DTHQQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HhhHhhHHHHHHHHHHHHHHHHhcC
Confidence 5667788888888888888876653
No 91
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=82.52 E-value=3.4 Score=26.65 Aligned_cols=35 Identities=29% Similarity=0.367 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 118 RVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 118 ~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
.+..|+.+...|..+...|..++..|+..+..|..
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777777777777777777777666654
No 92
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=82.25 E-value=5.9 Score=27.48 Aligned_cols=41 Identities=20% Similarity=0.283 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKN 149 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~ 149 (168)
-+.|.+|--+|.+|+++-.+...++..-..|+..|+++|..
T Consensus 25 ~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~ 65 (81)
T 3qh9_A 25 LQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVAL 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 35677777788888777777777777777777777777643
No 93
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=82.06 E-value=9.3 Score=27.53 Aligned_cols=16 Identities=31% Similarity=0.225 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 030957 131 ERLSTLQNENQMLRHI 146 (168)
Q Consensus 131 ~~v~~L~~En~~Lr~~ 146 (168)
.+|..|..||+.|++.
T Consensus 72 ~everL~~ENq~L~~e 87 (104)
T 3s9g_A 72 LELDRLRAENLQLLTE 87 (104)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 94
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=82.06 E-value=4 Score=26.17 Aligned_cols=33 Identities=30% Similarity=0.418 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 119 VKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 119 v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
+..|+.+...|..+...|..++..|+..+..+.
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666666655544
No 95
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=82.02 E-value=1.9 Score=27.59 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 126 NSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 126 N~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
..+|-.+|+.|..||..||+.|....
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS 30 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNS 30 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhH
Confidence 35788999999999999999998754
No 96
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=81.94 E-value=0.59 Score=38.40 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 030957 113 NELETRVKDLERKNSELDER---LSTLQNENQMLRHILK 148 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~L~~~---v~~L~~En~~Lr~~L~ 148 (168)
..|..+.+.|.++|.+|+.+ +..|+.||..||.+|.
T Consensus 22 ~~l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 22 KNTYTENQHLKERLEELAQLESEVADLKKENKDLKESLD 60 (255)
T ss_dssp ----CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555666677777666543 4457778999998875
No 97
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=81.87 E-value=6 Score=24.59 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHh
Q 030957 114 ELETRVKDLERKNSELDERLSTLQNEN----QMLRHILKNT 150 (168)
Q Consensus 114 ~LE~~v~~Le~eN~~L~~~v~~L~~En----~~Lr~~L~~~ 150 (168)
+||.+|..|+.-...|+.++..|..|. ..|+++|..+
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~l 42 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQL 42 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777777777777777777777664 4456655544
No 98
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=81.84 E-value=8.4 Score=26.11 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 109 KAYLNELETRVKDLERKNSELDERLST 135 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~~~v~~ 135 (168)
.+.|.+|+.++.+++.++.+|+.+++.
T Consensus 39 d~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 39 DALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444443
No 99
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=81.72 E-value=1.8 Score=25.34 Aligned_cols=31 Identities=26% Similarity=0.346 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 118 RVKDLERKNSELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 118 ~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
+..+|+.+..+|-.+-..|++|...|+.+|.
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHHHhc
Confidence 3456777777777777777777777776654
No 100
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=81.71 E-value=1.6 Score=38.14 Aligned_cols=41 Identities=24% Similarity=0.295 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 111 YLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
.+.+|+.+++.|+.++.+|.+++...+.+...|-..|.++.
T Consensus 18 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 18 KIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33445555555555555555555544444555555555554
No 101
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=81.61 E-value=2.7 Score=24.61 Aligned_cols=31 Identities=26% Similarity=0.223 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 118 RVKDLERKNSELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 118 ~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
++.+|+....+|-..-..|++|...|+..|.
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAKAVG 32 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 4567777777777777778888777777764
No 102
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=81.59 E-value=4 Score=32.35 Aligned_cols=40 Identities=10% Similarity=0.113 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
.++++.|-..+..|..+|..|+++.+.|..|-.....+|.
T Consensus 144 ~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 144 RELICYCLDTIAENQAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4577888888888888888888888888888777666664
No 103
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=81.09 E-value=1.5 Score=28.04 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 109 KAYLNELETRVKDLERKNSELDERL 133 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~~~v 133 (168)
..|++.|+.++..|+..+..|...|
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888888888888777776654
No 104
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=81.01 E-value=3.5 Score=26.21 Aligned_cols=26 Identities=15% Similarity=0.238 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 113 NELETRVKDLERKNSELDERLSTLQN 138 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~L~~~v~~L~~ 138 (168)
+.|..++.+|..++..|..+++.|..
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 105
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=80.81 E-value=7.3 Score=27.12 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 120 KDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 120 ~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
.+--.+|..|..+|..|..|+..|++.+..+.
T Consensus 42 ~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 42 YEALKENEKLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445777777777777777777777776654
No 106
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=80.59 E-value=6.4 Score=27.56 Aligned_cols=29 Identities=21% Similarity=0.255 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 122 LERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 122 Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
++.+...|+.+|..+..++..|.-.+.++
T Consensus 54 ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl 82 (93)
T 3s4r_A 54 YEEEMRELRRQVDQLTNDKARVEVERDNL 82 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666655555544
No 107
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=80.34 E-value=5.2 Score=28.85 Aligned_cols=29 Identities=34% Similarity=0.486 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRH 145 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~ 145 (168)
..|.+|+.+|..|..+|.. |..||.+-++
T Consensus 65 ~~v~eLe~everL~~ENq~-------L~~e~~~~~~ 93 (104)
T 3s9g_A 65 ARVRELELELDRLRAENLQ-------LLTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH-------HHHHHHhhcc
Confidence 3444555555554444444 4445555443
No 108
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=80.01 E-value=1.1 Score=32.86 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030957 127 SELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 127 ~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
.+|.++|..|+-||..||++|.
T Consensus 11 EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 11 EEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4667777778888888888874
No 109
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=79.95 E-value=6.6 Score=28.80 Aligned_cols=44 Identities=25% Similarity=0.390 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTAS 153 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~ 153 (168)
..|.+|+.++.+.+..|..|...-..|+.++..|+..|..+-..
T Consensus 83 ~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~~ 126 (129)
T 2fxo_A 83 AKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLELT 126 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666777777777788888888888888888888888776543
No 110
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=79.70 E-value=4.3 Score=28.64 Aligned_cols=35 Identities=17% Similarity=0.221 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 118 RVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 118 ~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
+...|+.++..|..+++.|..|+..+...+..+..
T Consensus 49 q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~ 83 (90)
T 2wt7_B 49 QKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKV 83 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44679999999999999999999999888776653
No 111
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=79.67 E-value=5 Score=36.67 Aligned_cols=47 Identities=19% Similarity=0.179 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 105 RERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 105 R~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
...+.+|.++|+.++..|+.+...-..+|..|++-+..|+..|+.|-
T Consensus 105 dNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLE 151 (562)
T 3ghg_A 105 DNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLE 151 (562)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555577777777776665544666777776666666666654
No 112
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=79.65 E-value=16 Score=31.26 Aligned_cols=30 Identities=20% Similarity=0.400 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 123 ERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 123 e~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
+++..+-..+|++|+.|+..|.++|+++.+
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (471)
T 3mq9_A 435 DAEKAQGQKKVEELEGEITTLNHKLQDASA 464 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333445677777777777777776654
No 113
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=79.14 E-value=11 Score=36.89 Aligned_cols=33 Identities=24% Similarity=0.301 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNENQM 142 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~ 142 (168)
+..++|+.++..|+++|..|+++++.|+.....
T Consensus 1016 ~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~ 1048 (1080)
T 2dfs_A 1016 KYKHETEQLVSELKEQNTLLKTEKEELNRRIHD 1048 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334677777888888888888888877744333
No 114
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=78.46 E-value=2.8 Score=22.98 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 121 DLERKNSELDERLSTLQNENQMLR 144 (168)
Q Consensus 121 ~Le~eN~~L~~~v~~L~~En~~Lr 144 (168)
.|+=+|..|.+.|..|...+..|+
T Consensus 4 alefendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHHHHhc
Confidence 345556666655555555555544
No 115
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=78.20 E-value=4.4 Score=22.99 Aligned_cols=27 Identities=15% Similarity=0.268 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 125 KNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 125 eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
+...|+++|..|..|+..|+..+..+.
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777665543
No 116
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=78.14 E-value=4.8 Score=27.66 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 113 NELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
++|=.+|.+|..++..|+.++..++.-...|...+.++-
T Consensus 33 ~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elE 71 (77)
T 2w83_C 33 NDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELE 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777766666666666665554
No 117
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=77.92 E-value=2.9 Score=27.10 Aligned_cols=16 Identities=19% Similarity=0.310 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHhc
Q 030957 136 LQNENQMLRHILKNTT 151 (168)
Q Consensus 136 L~~En~~Lr~~L~~~~ 151 (168)
.+.||..|...|++..
T Consensus 37 ~eQEieRL~~LLkqHg 52 (58)
T 3a2a_A 37 KEQEIERLNKLLRQHG 52 (58)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHcC
Confidence 4455555666665543
No 118
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=77.76 E-value=9.9 Score=33.43 Aligned_cols=41 Identities=20% Similarity=0.274 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
+.++++..+++.|++++.+|+.+++..+.....|++.+..+
T Consensus 530 ~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~ 570 (597)
T 3oja_B 530 TEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLK 570 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 33444444444455555555555555555555555555444
No 119
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=77.44 E-value=6.8 Score=25.44 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 111 YLNELETRVKDLERKNSELDERLSTLQ 137 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~ 137 (168)
.+.+|+.+...|..+...|+.++..|.
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555554444443
No 120
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=77.43 E-value=5.4 Score=27.18 Aligned_cols=44 Identities=11% Similarity=-0.000 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTAS 153 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~ 153 (168)
..+..+|.-+++|.......+.+|+.|+.++..|.++|..+...
T Consensus 21 ~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~~ 64 (78)
T 3efg_A 21 TRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRST 64 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 45667788889999999999999999999999999999988763
No 121
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=77.04 E-value=3.3 Score=36.26 Aligned_cols=45 Identities=13% Similarity=0.082 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 030957 109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTAS 153 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~ 153 (168)
++.+++|+.+++.+..++..|.+++...+.+...|-..|.++...
T Consensus 16 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gn 60 (412)
T 3u06_A 16 RQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDN 60 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 334455666666666666666666666666666666666666543
No 122
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=76.74 E-value=9.7 Score=27.63 Aligned_cols=44 Identities=18% Similarity=0.144 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 105 RERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 105 R~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
+.|=...++.+...+.++..+...-......+++++..||..|.
T Consensus 36 ~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD 79 (119)
T 3ol1_A 36 KARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVD 79 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhccc
Confidence 33333344444444444433333222223334444444444443
No 123
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=76.66 E-value=5.6 Score=22.27 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 113 NELETRVKDLERKNSELDERLSTLQ 137 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~L~~~v~~L~ 137 (168)
+.||.++..|+...+.|...++.|+
T Consensus 4 ealekkcaalesklqalekkleale 28 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777777777777777766654
No 124
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=76.22 E-value=27 Score=27.62 Aligned_cols=51 Identities=22% Similarity=0.311 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 100 SAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 100 AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
-=..|..-=+++=.+||..+..+++.|..|+.++..|..|+..+|..+...
T Consensus 32 El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~ 82 (189)
T 2v71_A 32 ELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQ 82 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566666777778888888888888888877777777776666665544
No 125
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=76.19 E-value=13 Score=25.97 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
..+...+.++..|..+...|..++..|..+...|+..+.
T Consensus 64 ~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 64 ELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666666666666666666665
No 126
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=76.14 E-value=3.1 Score=34.49 Aligned_cols=38 Identities=24% Similarity=0.275 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 108 KKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRH 145 (168)
Q Consensus 108 Kk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~ 145 (168)
.+.++..|+.+...|.....+|+.+|..|+.|+..|++
T Consensus 59 L~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 59 LEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56677889999999999999999999999999988874
No 127
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=76.08 E-value=6.4 Score=26.87 Aligned_cols=26 Identities=27% Similarity=0.403 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 114 ELETRVKDLERKNSELDERLSTLQNE 139 (168)
Q Consensus 114 ~LE~~v~~Le~eN~~L~~~v~~L~~E 139 (168)
+||.+|..|+.-...|+.++..|..|
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaE 29 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAE 29 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555554444444444444
No 128
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=76.02 E-value=12 Score=25.96 Aligned_cols=36 Identities=14% Similarity=0.426 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
++.+..++..|+.+|.+|+. |....++|-..|..++
T Consensus 47 ie~~~eEi~~Lk~en~~L~e----lA~~~q~la~~i~~L~ 82 (83)
T 1wlq_A 47 IEQKDSEIARLRKENKDLAE----VAEHVQYMAEVIERLS 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTHH----HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhc
Confidence 44444444455555554443 4455566666666554
No 129
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=75.94 E-value=10 Score=25.75 Aligned_cols=47 Identities=17% Similarity=0.257 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 106 ERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 106 ~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
.-|...|..|+..+..--+....|..+|=.|.-||.-|.+.|..+..
T Consensus 28 ~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 28 KSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 34666777777766655555567888888899999999999987754
No 130
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=75.15 E-value=4.8 Score=32.94 Aligned_cols=63 Identities=17% Similarity=0.133 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 87 ENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKN 149 (168)
Q Consensus 87 e~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~ 149 (168)
+.+|.+|.+--=+==.++|+-+...++++-.+.+.+..+..+|..++..++.++..|+..+.+
T Consensus 118 ~~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e 180 (250)
T 2ve7_C 118 KAKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDE 180 (250)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC--------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467777776555555667777777666666666655555555555555555555444444433
No 131
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=75.09 E-value=9.8 Score=24.02 Aligned_cols=29 Identities=24% Similarity=0.303 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 113 NELETRVKDLERKNSELDERLSTLQNENQ 141 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~L~~~v~~L~~En~ 141 (168)
..|..+...|..-....+.+|..|..++.
T Consensus 19 ~~L~~rN~rL~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 19 DSLAARNSKLMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 132
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=74.68 E-value=8.4 Score=27.85 Aligned_cols=40 Identities=20% Similarity=0.334 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
|..+++++..+..|..++.+....+..+...+..|...+.
T Consensus 36 KD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~ 75 (103)
T 4h22_A 36 KDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFA 75 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555554443434433333333333333
No 133
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=74.66 E-value=13 Score=23.06 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 113 NELETRVKDLERKNSELDERLSTLQNEN 140 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~L~~~v~~L~~En 140 (168)
-+||..-+.|++....|+.+|..|++|.
T Consensus 20 lqlerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 20 LQLERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666666666666666654
No 134
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=74.61 E-value=2.9 Score=28.17 Aligned_cols=7 Identities=29% Similarity=0.178 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 030957 134 STLQNEN 140 (168)
Q Consensus 134 ~~L~~En 140 (168)
..|..++
T Consensus 67 ~~L~~e~ 73 (80)
T 1hlo_A 67 HTHQQDI 73 (80)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 135
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=74.57 E-value=8.4 Score=26.07 Aligned_cols=11 Identities=36% Similarity=0.283 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 030957 139 ENQMLRHILKN 149 (168)
Q Consensus 139 En~~Lr~~L~~ 149 (168)
|...||+.|..
T Consensus 57 eL~elrq~Lak 67 (72)
T 3cve_A 57 ELTELRDNLAK 67 (72)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344444433
No 136
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=74.54 E-value=14 Score=23.72 Aligned_cols=39 Identities=18% Similarity=0.391 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
+-.|-.+|.+|.++|..|+.-++.-+.--..|...+..+
T Consensus 12 VYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 12 VYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556888889999999988887776665555555555443
No 137
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=74.43 E-value=13 Score=26.13 Aligned_cols=30 Identities=27% Similarity=0.428 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 114 ELETRVKDLERKNSELDERLSTLQNENQML 143 (168)
Q Consensus 114 ~LE~~v~~Le~eN~~L~~~v~~L~~En~~L 143 (168)
.|..++..|+++...|..+|..++.|...|
T Consensus 22 ~L~~eL~~lEke~~~l~~el~~le~E~~~L 51 (96)
T 3q8t_A 22 RLIQELEDVEKNRKVVAENLEKVQAEAERL 51 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443333
No 138
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=74.42 E-value=6.9 Score=24.58 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 030957 133 LSTLQNENQMLRHILKNT 150 (168)
Q Consensus 133 v~~L~~En~~Lr~~L~~~ 150 (168)
-..++.||..|+..|+..
T Consensus 27 c~~~eQEieRL~~LLkqH 44 (48)
T 3vmx_A 27 CSEKEQEIERLNKLLKQN 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHc
Confidence 333455566666666543
No 139
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=74.11 E-value=5.3 Score=22.72 Aligned_cols=27 Identities=33% Similarity=0.484 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 114 ELETRVKDLERKNSELDERLSTLQNEN 140 (168)
Q Consensus 114 ~LE~~v~~Le~eN~~L~~~v~~L~~En 140 (168)
.||.++..|....++|+.+++.|+.-.
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777766677777777666543
No 140
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=74.06 E-value=12 Score=23.47 Aligned_cols=34 Identities=26% Similarity=0.408 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLRH 145 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~ 145 (168)
...||.-|..|+..|..|...|..|+..+..|..
T Consensus 19 naklenivarlendnanlekdianlekdianler 52 (56)
T 3he4_A 19 NAKLENIVARLENDNANLEKDIANLEKDIANLER 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 4567777888888888888888888888777654
No 141
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=74.05 E-value=10 Score=26.44 Aligned_cols=43 Identities=26% Similarity=0.443 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
..+.+++.+...+..+...|+..+..|..++..|...|..+..
T Consensus 3 ~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~ 45 (112)
T 1l8d_A 3 KLLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKK 45 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3466777777777777788888888888888888888877754
No 142
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=73.56 E-value=19 Score=27.61 Aligned_cols=48 Identities=17% Similarity=0.211 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 105 RERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 105 R~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
+...+..+.+|+.++..-.+-+..|+.++..|.-++..|.+.+..+..
T Consensus 77 l~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~ 124 (152)
T 3a7p_A 77 LKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKK 124 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666777776666677777777777777777777777776653
No 143
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=73.51 E-value=10 Score=33.17 Aligned_cols=38 Identities=21% Similarity=0.172 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 113 NELETRVKDLERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
..|+.++.+|.+++.+|.+++..++.|+..|+++|...
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 43 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQS 43 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777777777777777766543
No 144
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=72.98 E-value=14 Score=23.33 Aligned_cols=31 Identities=6% Similarity=0.143 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 111 YLNELETRVKDLERKNSELDERLSTLQNENQ 141 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~ 141 (168)
.|++|..+|..|..+..+|...|..|..+..
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~ 35 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDAQ 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555554444444433
No 145
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=72.70 E-value=1.4 Score=32.23 Aligned_cols=40 Identities=13% Similarity=0.213 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 108 KKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 108 Kk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
--+||..|+.++..|..+... ...|+.+|..|...|++|-
T Consensus 72 aieYIk~Lq~~~~~l~~~~~~----~~~l~~~n~~L~~riqeLE 111 (118)
T 4ati_A 72 SVDYIRKLQREQQRAKDLENR----QKKLEHANRHLLLRVQELE 111 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 345666666666665543222 3335666666666665554
No 146
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=72.69 E-value=13 Score=29.84 Aligned_cols=46 Identities=20% Similarity=0.255 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 030957 108 KKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTAS 153 (168)
Q Consensus 108 Kk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~ 153 (168)
+.+.+++|++.+...-.+...|...++.|+.|+..|+..|..+.+.
T Consensus 28 ~~~~~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeGn 73 (206)
T 3oa7_A 28 RTEALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEGN 73 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCC
Confidence 4567888999999999999999999999999999999999998764
No 147
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=72.18 E-value=9.1 Score=25.55 Aligned_cols=31 Identities=32% Similarity=0.446 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 107 RKKAYLNELETRVKDLERKNSELDERLSTLQ 137 (168)
Q Consensus 107 RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~ 137 (168)
.|.+.|.+||..+.+-..++.+|+.++..++
T Consensus 22 ~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~q 52 (67)
T 1zxa_A 22 LKEERIKELEKRLSEKEEEIQELKRKLHKCQ 52 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777777776666666666555555443
No 148
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=72.14 E-value=17 Score=23.38 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 119 VKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 119 v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
+..|+.+...|..+...|..++..|+..+..+.
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555443
No 149
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=71.65 E-value=12 Score=23.70 Aligned_cols=31 Identities=6% Similarity=0.124 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 118 RVKDLERKNSELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 118 ~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
++..|..+...|..+|..|..+...|+.-+.
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~ 35 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDAQ 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555443
No 150
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=71.32 E-value=14 Score=31.39 Aligned_cols=27 Identities=15% Similarity=0.182 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 119 VKDLERKNSELDERLSTLQNENQMLRH 145 (168)
Q Consensus 119 v~~Le~eN~~L~~~v~~L~~En~~Lr~ 145 (168)
+..|+.....+..+|..|+..+..|..
T Consensus 28 i~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 28 IQELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444443333333
No 151
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=71.14 E-value=20 Score=25.84 Aligned_cols=41 Identities=17% Similarity=0.230 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
..+|..++..|+.+--.|...+..-.-|+..|+.++..+..
T Consensus 51 ~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dlgK 91 (107)
T 1ytz_T 51 AKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQAQK 91 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHhcC
Confidence 33455555556666666777777777889999999999943
No 152
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=71.02 E-value=12 Score=29.88 Aligned_cols=33 Identities=15% Similarity=0.205 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 108 KKAYLNELETRVKDLERKNSELDERLSTLQNEN 140 (168)
Q Consensus 108 Kk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En 140 (168)
-++.+..|..++..|+..+..|..+++.+.++.
T Consensus 137 ~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K 169 (213)
T 1ik9_A 137 NQAKNEHLQKENERLLRDWNDVQGRFEKAVSAK 169 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666666666554443
No 153
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=70.86 E-value=15 Score=26.45 Aligned_cols=44 Identities=20% Similarity=0.333 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
++...+|...+..|+.+--.|...+..-.-|+..|+.++..+..
T Consensus 48 ~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dlgK 91 (106)
T 1j1d_B 48 REKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDNQK 91 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 45556666666667777777788888888899999999998843
No 154
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=70.37 E-value=19 Score=25.94 Aligned_cols=32 Identities=19% Similarity=0.323 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 113 NELETRVKDLERKNSELDERLSTLQNENQMLR 144 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr 144 (168)
+.|+..+..|+.....|+.++..+..+.+.+-
T Consensus 98 ~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 98 NELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555566666665555544443
No 155
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=70.33 E-value=16 Score=25.37 Aligned_cols=30 Identities=33% Similarity=0.402 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNE 139 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~E 139 (168)
+.+.+++.+.+.|+..|..|...|++|+..
T Consensus 49 ~r~~e~e~r~k~le~~n~~l~~riqELE~q 78 (83)
T 4ath_A 49 QRAKDLENRQKKLEHANRHLLLRVQELEMQ 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 445566667777777777777777777654
No 156
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=70.17 E-value=13 Score=32.32 Aligned_cols=40 Identities=28% Similarity=0.229 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 106 ERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRH 145 (168)
Q Consensus 106 ~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~ 145 (168)
....+++.+|+.++.+|..+..........|.++++.|+.
T Consensus 20 ~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkg 59 (403)
T 4etp_A 20 AALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRG 59 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3344455555555555555544444444455555555543
No 157
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.13 E-value=11 Score=33.03 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
+..|+.+++.|.-++..|+.++..|..|...|+..++.+..
T Consensus 51 lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 51 LKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQS 91 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45577777777777777888888888888888888776653
No 158
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=69.44 E-value=2.8 Score=30.69 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 111 YLNELETRVKDLERKNSELDERLS 134 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~ 134 (168)
-+++|..++..|+-||..|+.+|.
T Consensus 9 t~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 9 TYEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478999999999999999998886
No 159
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=69.34 E-value=26 Score=24.54 Aligned_cols=38 Identities=21% Similarity=0.263 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 111 YLNELETRVKDLERKNSELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
.+..++.+...++.+...|..++..|+.+...+...|.
T Consensus 31 ~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ 68 (101)
T 3u1c_A 31 DKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELH 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444443
No 160
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=69.14 E-value=21 Score=25.08 Aligned_cols=26 Identities=12% Similarity=0.224 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 103 QARERKKAYLNELETRVKDLERKNSE 128 (168)
Q Consensus 103 ~sR~RKk~~~~~LE~~v~~Le~eN~~ 128 (168)
....++...|..|..++..|+.+...
T Consensus 37 ~~~~~~E~Ei~sL~kk~~~lE~eld~ 62 (101)
T 3u1c_A 37 ERSKQLEDDIVQLEKQLRVTEDSRDQ 62 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444333
No 161
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=68.49 E-value=17 Score=21.96 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 109 KAYLNELETRVKDLERKNSELDER 132 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~~~ 132 (168)
|.||++||.+..+|..-...|+-.
T Consensus 9 knyiqeleernaelknlkehlkfa 32 (46)
T 3he4_B 9 KNYIQELEERNAELKNLKEHLKFA 32 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHhHHHHHHHH
Confidence 456666666655555444444433
No 162
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=68.37 E-value=19 Score=22.53 Aligned_cols=31 Identities=13% Similarity=0.199 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 119 VKDLERKNSELDERLSTLQNENQMLRHILKN 149 (168)
Q Consensus 119 v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~ 149 (168)
+..|..-|..|-.+|..|+.-+..+.|.+..
T Consensus 6 l~kLKe~n~~L~~kv~~Le~~c~~~eQEieR 36 (48)
T 3vmx_A 6 ILRLKQINIQLATKIQHLEFSCSEKEQEIER 36 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 3333344444444444444444444443333
No 163
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=67.90 E-value=25 Score=23.69 Aligned_cols=20 Identities=25% Similarity=0.612 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030957 117 TRVKDLERKNSELDERLSTL 136 (168)
Q Consensus 117 ~~v~~Le~eN~~L~~~v~~L 136 (168)
.+++.++.+|..|+.+|..|
T Consensus 7 ~kLq~~E~~N~~Le~~v~~l 26 (72)
T 3cve_A 7 MKLQEVEIRNKDLEGQLSEM 26 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHH
Confidence 33444444444444444333
No 164
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=67.51 E-value=3.1 Score=26.76 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 030957 109 KAYLNELETRVKDLERKNSEL 129 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L 129 (168)
+.|+..||.+|..|+.....|
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 367888888888777665554
No 165
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=66.90 E-value=26 Score=23.49 Aligned_cols=38 Identities=26% Similarity=0.314 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHILKN 149 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~ 149 (168)
+...+.+...++.+...|..+|..|+.+...+...|..
T Consensus 29 l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~ 66 (81)
T 1ic2_A 29 KKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKD 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444555555555554444444433
No 166
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=66.75 E-value=18 Score=29.05 Aligned_cols=36 Identities=17% Similarity=0.312 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 116 ETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 116 E~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
-.+...|-.++..|..+|..|..||..|+.++..+.
T Consensus 114 LeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q 149 (209)
T 2wvr_A 114 LKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQ 149 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335556666666777777777777777776655443
No 167
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=66.09 E-value=25 Score=24.56 Aligned_cols=27 Identities=30% Similarity=0.470 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 114 ELETRVKDLERKNSELDERLSTLQNEN 140 (168)
Q Consensus 114 ~LE~~v~~Le~eN~~L~~~v~~L~~En 140 (168)
.++.+...++.+...|..++..|+.+.
T Consensus 34 ~~e~~~~~~E~ei~sL~kKiq~lE~el 60 (101)
T 3u59_A 34 QAEDRCKQLEEEQQGLQKKLKGTEDEV 60 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444443333
No 168
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=65.38 E-value=22 Score=27.86 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 030957 119 VKDLERKNSELDERLSTLQNE 139 (168)
Q Consensus 119 v~~Le~eN~~L~~~v~~L~~E 139 (168)
|..|+.+|..|..++.....+
T Consensus 137 V~kLqkeiD~LEDeL~~eKek 157 (175)
T 3mud_A 137 TAKNEKSIDDLEEKVAHAKEE 157 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 169
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=65.34 E-value=32 Score=30.14 Aligned_cols=44 Identities=11% Similarity=0.086 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTAS 153 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~ 153 (168)
+.+..||..+...+.....|+..+..+...+..|+++|..+...
T Consensus 91 ~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~ 134 (409)
T 1m1j_C 91 EEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESH 134 (409)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34555566566666666677777777777777777777666543
No 170
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=65.26 E-value=24 Score=22.76 Aligned_cols=32 Identities=13% Similarity=0.182 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 119 VKDLERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 119 v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
+..|.+.|..|-.+|..|+-.|....|.+..+
T Consensus 13 ~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL 44 (58)
T 3a2a_A 13 LLRLKQMNVQLAAKIQHLEFSCSEKEQEIERL 44 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444433
No 171
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=64.87 E-value=30 Score=23.65 Aligned_cols=11 Identities=36% Similarity=0.223 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 030957 139 ENQMLRHILKN 149 (168)
Q Consensus 139 En~~Lr~~L~~ 149 (168)
|...||+-|..
T Consensus 63 eL~elRqgLak 73 (79)
T 3cvf_A 63 ELSELREGLAR 73 (79)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 172
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=64.54 E-value=13 Score=22.76 Aligned_cols=27 Identities=19% Similarity=0.421 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 122 LERKNSELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 122 Le~eN~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
|......|..+|..|+.....|...|.
T Consensus 14 l~~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 14 LNERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555554444
No 173
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=64.25 E-value=29 Score=25.62 Aligned_cols=35 Identities=11% Similarity=0.179 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 118 RVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 118 ~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
+++.|+.....|...+..+......+...|..+..
T Consensus 106 ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~ 140 (151)
T 2zdi_C 106 RLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQ 140 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444443
No 174
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=63.87 E-value=13 Score=26.93 Aligned_cols=27 Identities=22% Similarity=0.270 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 118 RVKDLERKNSELDERLSTLQNENQMLR 144 (168)
Q Consensus 118 ~v~~Le~eN~~L~~~v~~L~~En~~Lr 144 (168)
+++.+..++..|+.+|..|+.|+...|
T Consensus 90 ~~~~e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 90 KYEKEKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444555666666666666655543
No 175
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=63.87 E-value=49 Score=25.61 Aligned_cols=9 Identities=0% Similarity=-0.108 Sum_probs=4.0
Q ss_pred HHHHHHHHh
Q 030957 142 MLRHILKNT 150 (168)
Q Consensus 142 ~Lr~~L~~~ 150 (168)
.++.+|.+-
T Consensus 135 k~~~em~Ke 143 (175)
T 3lay_A 135 KRDVAMAQA 143 (175)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 344445444
No 176
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=63.60 E-value=4 Score=34.83 Aligned_cols=41 Identities=10% Similarity=0.054 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 111 YLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
.|..||.+|..++.+...|+..+..|+.++..|.++|..+.
T Consensus 5 ~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~ 45 (319)
T 1fzc_C 5 EIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLE 45 (319)
T ss_dssp -----CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555554443
No 177
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=63.56 E-value=30 Score=24.87 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 113 NELETRVKDLERKNSELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
+-|-..+.+++..+.+|+++.....+++..|+-.+.
T Consensus 33 dlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~ 68 (103)
T 4h22_A 33 DTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHS 68 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444433
No 178
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=63.19 E-value=27 Score=26.05 Aligned_cols=27 Identities=33% Similarity=0.574 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 113 NELETRVKDLERKNSELDERLSTLQNE 139 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~L~~~v~~L~~E 139 (168)
..|+.++..|+..|..|..++..+..+
T Consensus 53 ~eL~~~~~~Le~~n~~L~~~lke~~~~ 79 (155)
T 2oto_A 53 EELEKAKQALEDQRKDLETKLKELQQD 79 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556666666555555444433
No 179
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=63.04 E-value=17 Score=22.11 Aligned_cols=32 Identities=25% Similarity=0.460 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 111 YLNELETRVKDLERKNSELDERLSTLQNENQM 142 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~ 142 (168)
-+.+|..+-+.|++....|..+++.|......
T Consensus 10 lvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~a 41 (43)
T 2pnv_A 10 MISDLNERSEDFEKRIVTLETKLETLIGSIHA 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35666677777777777777777777665543
No 180
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=62.73 E-value=33 Score=24.77 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 113 NELETRVKDLERKNSELDERLSTLQNE 139 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~L~~~v~~L~~E 139 (168)
..+..++..|..+...|+..++.|+.|
T Consensus 14 ~~~~~ei~~L~~ei~eLk~~ve~lEkE 40 (106)
T 4e61_A 14 TKSQETIGSLNEEIEQYKGTVSTLEIE 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666666666666665
No 181
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=62.67 E-value=23 Score=30.37 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
..++.|+.++.+-++...+|..+|..|..+++.++.+++++.
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 429 ALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345667788877777788888888888888888887777653
No 182
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=62.63 E-value=22 Score=24.67 Aligned_cols=40 Identities=13% Similarity=0.217 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 108 KKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 108 Kk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
--+||..|..+...+..+...++ .|+..|..|-..++++-
T Consensus 37 svdYI~~Lq~e~~r~~e~e~r~k----~le~~n~~l~~riqELE 76 (83)
T 4ath_A 37 SVDYIRKLQREQQRAKDLENRQK----KLEHANRHLLLRVQELE 76 (83)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HhhhhhHHHHHHHHHHH
Confidence 46888888888777766555543 36777777776666653
No 183
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=62.29 E-value=16 Score=29.92 Aligned_cols=40 Identities=18% Similarity=0.145 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
++++|.++..|+..+.++....+..+..+..|.+.|.++.
T Consensus 8 vd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~ 47 (233)
T 2yko_A 8 CDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIW 47 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555544445545555555555444
No 184
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=62.18 E-value=22 Score=28.60 Aligned_cols=20 Identities=25% Similarity=0.287 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDE 131 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~ 131 (168)
+.+|..++..|..+...++.
T Consensus 75 ~~el~d~~lR~~AEfeN~Rk 94 (213)
T 4ani_A 75 LSEMEHRYLRLYADFENFRR 94 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433
No 185
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=62.07 E-value=8.7 Score=21.02 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 113 NELETRVKDLERKNSELDERLSTLQ 137 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~L~~~v~~L~ 137 (168)
+.||-+...|++....|++.|..|.
T Consensus 3 dalefendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 3 DALEFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHhccHHHHHHHHHHHHHHHHhc
Confidence 3456666666677777777766653
No 186
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=62.06 E-value=32 Score=29.53 Aligned_cols=39 Identities=15% Similarity=0.174 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 114 ELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 114 ~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
++|.+...+.......+.+++.|..|+..|+..|.++..
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (487)
T 3oja_A 425 EQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADL 463 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhh
Confidence 333444444445555667777777888888877776654
No 187
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=61.92 E-value=34 Score=23.19 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 030957 113 NELETRVKDLERKNSELD 130 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~L~ 130 (168)
+.|+.++..|+.+...|.
T Consensus 25 e~le~~Ie~LE~~i~~le 42 (89)
T 2lw1_A 25 EQLPQLLEDLEAKLEALQ 42 (89)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 188
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=61.45 E-value=31 Score=22.57 Aligned_cols=40 Identities=18% Similarity=0.371 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
+-.|-.+|.+|..+|..++.-++.-+..+..|...+..+.
T Consensus 9 VYalkDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~~ 48 (61)
T 3l4f_A 9 VYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVL 48 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999999988888888888877776554
No 189
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=60.94 E-value=36 Score=23.10 Aligned_cols=30 Identities=20% Similarity=0.329 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNS----ELDERLSTLQNENQ 141 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~----~L~~~v~~L~~En~ 141 (168)
++.|+.++..|-.+.. .|+++|..|+....
T Consensus 16 ld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~ 49 (74)
T 3swf_A 16 VDLLQTRFARILAEYESMQQKLKQRLTKVEKFLK 49 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445555544433332 34555555554433
No 190
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=60.85 E-value=36 Score=23.25 Aligned_cols=13 Identities=54% Similarity=0.920 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 030957 121 DLERKNSELDERL 133 (168)
Q Consensus 121 ~Le~eN~~L~~~v 133 (168)
.++.+|..|+.+|
T Consensus 17 ~~E~rN~~Le~~v 29 (79)
T 3cvf_A 17 DLETRNAELEHQL 29 (79)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHH
Confidence 3333333333333
No 191
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=60.48 E-value=27 Score=21.53 Aligned_cols=28 Identities=25% Similarity=0.396 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 118 RVKDLERKNSELDERLSTLQNENQMLRH 145 (168)
Q Consensus 118 ~v~~Le~eN~~L~~~v~~L~~En~~Lr~ 145 (168)
..-+|+..-+.|...|..|+.|+..|..
T Consensus 18 dnlqlerdeqnlekiianlrdeiarlen 45 (52)
T 3he5_B 18 DNLQLERDEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHhhHHHHHHHHHHHHHHHHH
Confidence 3333444444444455555555554443
No 192
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=59.98 E-value=31 Score=24.73 Aligned_cols=41 Identities=12% Similarity=0.200 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 111 YLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
-++.|+.+++.|+.....|...+..+......+...|.++.
T Consensus 89 A~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 89 AMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34667778888888888888888888877777777776653
No 193
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=59.55 E-value=37 Score=24.05 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhc
Q 030957 111 YLNELETRVKDLERKNSELDE---RLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~---~v~~L~~En~~Lr~~L~~~~ 151 (168)
...+|+.+++.|+.+...|.. ....|++.-..|...|..+.
T Consensus 48 t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F~ 91 (96)
T 1t3j_A 48 TQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENFS 91 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 456777777777777776543 44457777777777777664
No 194
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=59.39 E-value=50 Score=36.25 Aligned_cols=60 Identities=10% Similarity=0.186 Sum_probs=39.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 90 RLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKN 149 (168)
Q Consensus 90 r~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~ 149 (168)
++...+.+-..|+..=..+++.+.+|+.+++.|+.+..++..+.+.|+.|.......|..
T Consensus 2015 ~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~r 2074 (3245)
T 3vkg_A 2015 EVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDR 2074 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555567777778888888877777777766666666666665555544
No 195
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=59.29 E-value=38 Score=24.66 Aligned_cols=31 Identities=16% Similarity=0.212 Sum_probs=17.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 94 LLRNRVSAQQARERKKAYLNELETRVKDLER 124 (168)
Q Consensus 94 ~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~ 124 (168)
+..|=.+|.+.=..|...+++|..++..+..
T Consensus 29 L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~ 59 (110)
T 2v4h_A 29 LRQQLQQAEEALVAKQELIDKLKEEAEQHKI 59 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555556666666666666655544
No 196
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=59.28 E-value=12 Score=22.21 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 030957 109 KAYLNELETRVKDLERKNSEL 129 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L 129 (168)
|+.|..|+.++..|..+..+|
T Consensus 14 keQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 14 KEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 197
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=59.06 E-value=38 Score=25.31 Aligned_cols=40 Identities=13% Similarity=0.266 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 113 NELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
.+|...+..|+.+.-.|...+..-.-|+..|+.++..+..
T Consensus 68 keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~g 107 (133)
T 1j1d_C 68 RQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRG 107 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHHc
Confidence 3344444445555555666666666778888888888753
No 198
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=58.31 E-value=29 Score=25.57 Aligned_cols=37 Identities=11% Similarity=0.148 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 115 LETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 115 LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
-..++..|+.||.....++.....|...|..++..+-
T Consensus 90 Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l 126 (132)
T 1ykh_B 90 QLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMI 126 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557777888888887777777777777777766554
No 199
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=58.16 E-value=29 Score=23.96 Aligned_cols=38 Identities=24% Similarity=0.329 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 114 ELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 114 ~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
+.....+.|-++...|+-+|..|.+|.......|+.+.
T Consensus 16 e~~~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK 53 (81)
T 3qh9_A 16 EKQRKAEELLQELRHLKIKVEELENERNQYEWKLKATK 53 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 33345556667777777777777777777666666553
No 200
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=58.11 E-value=43 Score=24.07 Aligned_cols=33 Identities=21% Similarity=0.384 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 117 TRVKDLERKNSELDERLSTLQNENQMLRHILKN 149 (168)
Q Consensus 117 ~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~ 149 (168)
.+++.++.+..+|-..+-.|++|+..|+..++-
T Consensus 76 kEMKq~aaqsaaLlsk~yh~ene~ar~kkl~~~ 108 (114)
T 2xzr_A 76 KEMKQIEDKIEEILSKIYHIENEIARIKKLIKL 108 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 334444555555666666677888888877754
No 201
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=57.95 E-value=19 Score=31.62 Aligned_cols=44 Identities=25% Similarity=0.231 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
-+|.++||.++..|+.....--..|..|+.-+..++-.|+.|-.
T Consensus 112 ~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~ 155 (390)
T 1deq_A 112 KQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEV 155 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777664433222566666665555555555543
No 202
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=57.39 E-value=28 Score=26.68 Aligned_cols=26 Identities=31% Similarity=0.222 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 123 ERKNSELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 123 e~eN~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
+..|..|+.++..-..-+..|..+|.
T Consensus 114 e~r~~~L~~ql~e~~~~l~~lq~ql~ 139 (154)
T 2ocy_A 114 EILNKRLTEQLREKDTLLDTLTLQLK 139 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444433333333333333
No 203
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=57.32 E-value=26 Score=20.74 Aligned_cols=17 Identities=24% Similarity=0.452 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 030957 131 ERLSTLQNENQMLRHIL 147 (168)
Q Consensus 131 ~~v~~L~~En~~Lr~~L 147 (168)
.+|..|+.+|..|..+|
T Consensus 20 dkVR~LE~~N~~Le~~i 36 (39)
T 1gk7_A 20 DKVRFLEQQNKILLAEL 36 (39)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555555554444
No 204
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=56.91 E-value=11 Score=26.91 Aligned_cols=25 Identities=44% Similarity=0.422 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 120 KDLERKNSELDERLSTLQNENQMLR 144 (168)
Q Consensus 120 ~~Le~eN~~L~~~v~~L~~En~~Lr 144 (168)
+.|+.++..|+.++..|+.|+..|+
T Consensus 10 ~~l~~~~~~l~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 10 KQLEDKVEELLSKNYHLENEVARLR 34 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444555555555555555444
No 205
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=56.83 E-value=26 Score=29.02 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNE 139 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~E 139 (168)
+..|+.++..|..+..+|+.++..|...
T Consensus 101 ~~~l~~~~~~l~~~~~~L~~~~~~l~~~ 128 (357)
T 3rrk_A 101 LRPVASRAEVLGKERAALEEEIQTIELF 128 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4444444444444444444444444443
No 206
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=56.57 E-value=31 Score=26.12 Aligned_cols=39 Identities=10% Similarity=0.135 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 030957 115 LETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTAS 153 (168)
Q Consensus 115 LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~ 153 (168)
-..++..|+.||.....++.....|...|..++..+-..
T Consensus 90 Q~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~~ 128 (151)
T 1yke_B 90 QLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIED 128 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355777788888887777777777766666666555433
No 207
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=55.83 E-value=44 Score=22.90 Aligned_cols=36 Identities=14% Similarity=0.387 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 111 YLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
.|+.+..++..|+.+|..|+. |..+.++|...|..+
T Consensus 42 ~ie~~~eEi~~LkeEN~~L~e----l~~~~~~laevl~~l 77 (79)
T 2zxx_A 42 EIEQKDSEIARLRKENKDLAE----VAEHVQYMAEVIERL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHTTHH----HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 344445555555555555543 555556666666655
No 208
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=55.75 E-value=52 Score=23.35 Aligned_cols=13 Identities=23% Similarity=0.248 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHH
Q 030957 137 QNENQMLRHILKN 149 (168)
Q Consensus 137 ~~En~~Lr~~L~~ 149 (168)
+..|..|+.+|..
T Consensus 82 e~kn~~L~~qL~d 94 (97)
T 2eqb_B 82 EILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 4445556666544
No 209
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=55.73 E-value=20 Score=24.58 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 030957 129 LDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 129 L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
|-.+|+.|..|+..|+..|..+
T Consensus 35 LI~rvdELt~E~e~l~~El~s~ 56 (77)
T 2w83_C 35 LIAKVDELTCEKDVLQGELEAV 56 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 3455666666666666555444
No 210
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=55.70 E-value=26 Score=21.27 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 126 NSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 126 N~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
...|..+++.|+.....|+..|+.+
T Consensus 22 laaleselqalekklaalksklqal 46 (48)
T 1g6u_A 22 LAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444555555555555443
No 211
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=55.66 E-value=2.6 Score=26.53 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 125 KNSELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 125 eN~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
+|..|.-.+..|++.|..|..-+.
T Consensus 18 enaklenivarlendnanlekdia 41 (56)
T 3he4_A 18 ENAKLENIVARLENDNANLEKDIA 41 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHhcccchHHHHHH
Confidence 444444444444444444444433
No 212
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=55.28 E-value=49 Score=22.91 Aligned_cols=28 Identities=7% Similarity=0.236 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQ 137 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~ 137 (168)
..|+.-..+++.|+.+...++..|..|.
T Consensus 51 ~el~~h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 51 NEISHHAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444555555555555555555543
No 213
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=55.17 E-value=48 Score=25.76 Aligned_cols=36 Identities=28% Similarity=0.333 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 113 NELETRVKDLERKNSELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
.+|...+..++..+.+|+..+..|.+....|.+.+.
T Consensus 37 tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~ 72 (168)
T 3o0z_A 37 TEMSKSISQLESLNRELQERNRILENSKSQTDKDYY 72 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444433
No 214
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=54.25 E-value=39 Score=24.74 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
+..|+.++..|+.....|...+..++.........+..+.+
T Consensus 90 ~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~ 130 (142)
T 3gp4_A 90 RIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEELKDFNV 130 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc
Confidence 33444444444444444444444444333333333433333
No 215
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=54.19 E-value=46 Score=22.27 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 109 KAYLNELETRVKDLERKNSELDERLSTL 136 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L 136 (168)
-+||..|+.++..|+.++..|+..+...
T Consensus 49 i~YI~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 49 IDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4677777777777777777766665543
No 216
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=53.97 E-value=23 Score=23.52 Aligned_cols=27 Identities=33% Similarity=0.428 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Q 030957 127 SELDERLSTLQNENQMLRHILKNTTAS 153 (168)
Q Consensus 127 ~~L~~~v~~L~~En~~Lr~~L~~~~~~ 153 (168)
.+|...+..-..|+..|+.+|..+...
T Consensus 28 ~eLE~~L~~kd~eI~eLr~~LdK~qsV 54 (67)
T 1zxa_A 28 KELEKRLSEKEEEIQELKRKLHKCQSV 54 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444555555555555555443
No 217
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=53.72 E-value=1.2e+02 Score=27.01 Aligned_cols=31 Identities=16% Similarity=0.246 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 121 DLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 121 ~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
.|..+-..|+.+|..|+.+...+...|..+.
T Consensus 120 ~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l 150 (501)
T 1wle_A 120 SLRARGREIRKQLTLLYPKEAQLEEQFYLRA 150 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555555555554443
No 218
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=53.36 E-value=25 Score=27.73 Aligned_cols=30 Identities=17% Similarity=0.278 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNE 139 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~E 139 (168)
..+.+|..++..|+++|..|+.+......+
T Consensus 152 d~~~~L~~~n~~LqkeNeRL~~E~n~~l~q 181 (184)
T 3w03_C 152 DTIAENQAKNEHLQKENERLLRDWNDVQGR 181 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666665554443
No 219
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=53.31 E-value=40 Score=22.28 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030957 127 SELDERLSTLQNENQMLRHILKN 149 (168)
Q Consensus 127 ~~L~~~v~~L~~En~~Lr~~L~~ 149 (168)
..|+++++.|..|+..|...|..
T Consensus 35 aKL~Rk~DKl~~ele~l~~~l~~ 57 (65)
T 3sja_C 35 TKNNRKLDSLDKEINNLKDEIQS 57 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 46899999999999999888864
No 220
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=53.06 E-value=55 Score=22.81 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Q 030957 128 ELDERLSTLQNENQMLRHILKNTTAS 153 (168)
Q Consensus 128 ~L~~~v~~L~~En~~Lr~~L~~~~~~ 153 (168)
.|..+|...+.++..|+..|+.+...
T Consensus 71 ~~~~klr~Yk~dL~~lk~elk~~~~~ 96 (102)
T 1vcs_A 71 MYSNRMRSYKQEMGKLETDFKRSRIA 96 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46677788888888888888887765
No 221
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=52.29 E-value=39 Score=20.83 Aligned_cols=19 Identities=16% Similarity=0.347 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030957 111 YLNELETRVKDLERKNSEL 129 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L 129 (168)
.++.||.-++.|+-..+.|
T Consensus 6 kv~~Le~~ld~LqTr~ArL 24 (46)
T 3swy_A 6 KVEQLGSSLDTLQTRFARL 24 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 222
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=51.62 E-value=57 Score=22.59 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030957 105 RERKKAYLNELETRVKDLERKNS 127 (168)
Q Consensus 105 R~RKk~~~~~LE~~v~~Le~eN~ 127 (168)
..+....|..|..++..|+.+..
T Consensus 39 ~~~~E~ei~sL~kKiq~lE~eld 61 (101)
T 3u59_A 39 CKQLEEEQQGLQKKLKGTEDEVE 61 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333
No 223
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=51.42 E-value=15 Score=26.14 Aligned_cols=24 Identities=33% Similarity=0.574 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 113 NELETRVKDLERKNSELDERLSTL 136 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~L~~~v~~L 136 (168)
.+|+.+...|..+...|+.+|..|
T Consensus 10 ~~l~~~~~~l~~~i~~lkeel~~L 33 (109)
T 2wg5_A 10 KQLEDKVEELLSKNYHLENEVARL 33 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444454444444
No 224
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=51.20 E-value=95 Score=27.25 Aligned_cols=49 Identities=10% Similarity=0.028 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Q 030957 109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTASRRGG 157 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~~~~ 157 (168)
.+.+..||.-+...+.....|+..+......+..|++.+..+......+
T Consensus 90 l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~~~~~ 138 (411)
T 3ghg_C 90 LEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEP 138 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3444445555555566666777777777777777777777776654443
No 225
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=51.17 E-value=52 Score=21.93 Aligned_cols=37 Identities=16% Similarity=0.226 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 113 NELETRVKDLERKNSELDERLSTLQNENQMLRHILKN 149 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~ 149 (168)
..++.+|..|...+..|...++.+.......-..|..
T Consensus 37 ~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 37 KQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555554444444443
No 226
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=51.10 E-value=27 Score=22.23 Aligned_cols=14 Identities=29% Similarity=0.382 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHH
Q 030957 135 TLQNENQMLRHILK 148 (168)
Q Consensus 135 ~L~~En~~Lr~~L~ 148 (168)
.|..|+...|..|.
T Consensus 39 ~Le~EIatYRkLLE 52 (59)
T 1gk6_A 39 ALDIEIATYRKLLE 52 (59)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHc
Confidence 34555566665553
No 227
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=51.07 E-value=49 Score=26.81 Aligned_cols=57 Identities=14% Similarity=0.201 Sum_probs=41.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 89 KRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 89 kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
..+++-+..|..+-+ +.+..|+.+++....|+..+..++.+.+.....||.+-..+.
T Consensus 163 e~Ik~yLa~R~~~lK------~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~ 219 (228)
T 3q0x_A 163 SVVKQFLAFRLSEVK------GTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHL 219 (228)
T ss_dssp HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 444555555554433 356788889999999999999999988888888888765543
No 228
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=51.06 E-value=20 Score=23.07 Aligned_cols=24 Identities=17% Similarity=0.427 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 127 SELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 127 ~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
-.|+.+|..|+.||..|++-|.+-
T Consensus 13 YaLkDqV~eL~qe~k~m~k~lEeE 36 (56)
T 2w6b_A 13 YALKDEVQELRQDNKKMKKSLEEE 36 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777777766543
No 229
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=50.60 E-value=23 Score=19.95 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 127 SELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 127 ~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
.+|..++.+.+.||-.|.+.+.++
T Consensus 4 aqlekevaqaeaenyqleqevaql 27 (33)
T 1fmh_A 4 AQLEKEVAQAEAENYQLEQEVAQL 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 345555555666666666655544
No 230
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=50.39 E-value=51 Score=24.02 Aligned_cols=39 Identities=28% Similarity=0.238 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
..|.+|+.+++.+++.|..|++-...--.|-..--..|-
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ks~eFReav~~Ll 42 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQTKIQEFRKACYTLT 42 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457888999999999999988877776666555444443
No 231
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=50.25 E-value=37 Score=20.00 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030957 124 RKNSELDERLSTLQNENQMLRHI 146 (168)
Q Consensus 124 ~eN~~L~~~v~~L~~En~~Lr~~ 146 (168)
.+|..|...|+.-..|+..|+..
T Consensus 7 ~ENekLhk~ie~KdeeIa~Lk~e 29 (37)
T 1t6f_A 7 KENEKLHKEIEQKDNEIARLKKE 29 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555554444444444444443
No 232
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.96 E-value=32 Score=30.01 Aligned_cols=42 Identities=12% Similarity=0.271 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
..+.+++.++..+......|..+...|..+...|+..|..+.
T Consensus 25 ~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~l~ 66 (405)
T 4b4t_J 25 QKIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQ 66 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345666666666666666677777777777777777776554
No 233
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=49.80 E-value=45 Score=24.19 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
+..|+.++..|...|..|...|..|+..|-.|-..-..+
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t 75 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRAT 75 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 556778888888888888888888888777776554443
No 234
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=49.70 E-value=50 Score=24.25 Aligned_cols=34 Identities=3% Similarity=0.131 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 030957 120 KDLERKNSELDERLSTLQNENQMLRHILKNTTAS 153 (168)
Q Consensus 120 ~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~ 153 (168)
..|+.....|.+++..|+.-...|...|..+...
T Consensus 98 ~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~ 131 (148)
T 3gpv_A 98 KLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDE 131 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555444443
No 235
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=49.33 E-value=37 Score=26.09 Aligned_cols=15 Identities=27% Similarity=0.290 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHH
Q 030957 106 ERKKAYLNELETRVK 120 (168)
Q Consensus 106 ~RKk~~~~~LE~~v~ 120 (168)
++|++|+.+|..+..
T Consensus 22 ~~K~~~LqeL~~Q~v 36 (155)
T 2aze_A 22 KQKQSQLQELILQQI 36 (155)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555555444
No 236
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=49.23 E-value=95 Score=24.42 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHI 146 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~ 146 (168)
+..|+.++..|...+..|+.+|..|+..|-.|...
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~ 124 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERA 124 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 44444444555555555555555554444444333
No 237
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=48.92 E-value=32 Score=21.70 Aligned_cols=23 Identities=4% Similarity=0.092 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 030957 129 LDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 129 L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
+...+..|..||..|+.+|..+.
T Consensus 32 v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 32 VRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666666666554
No 238
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=48.53 E-value=62 Score=22.96 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 107 RKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKN 149 (168)
Q Consensus 107 RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~ 149 (168)
|......+|..++.+-......-+..+..|+.-+..||++|.+
T Consensus 54 r~lAEqAe~DArLAeAka~~~Ka~~~~~el~~~I~~LrqEl~~ 96 (98)
T 4fm3_A 54 RLLAEQAELDARLAESKVLTQKSKDQLGELDKSLKRLRKQLGE 96 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444456677777777777777888888999999999998854
No 239
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=47.55 E-value=34 Score=25.21 Aligned_cols=46 Identities=9% Similarity=0.167 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTASRR 155 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~~ 155 (168)
+...-|+.+...|+.+..+|+..+..|...+..++..+........
T Consensus 95 ~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~~~~ 140 (148)
T 3gpv_A 95 HRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEISSANATTK 140 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 4456788888888888889998888888888888888776655433
No 240
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=47.16 E-value=52 Score=23.20 Aligned_cols=24 Identities=17% Similarity=0.356 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 127 SELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 127 ~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
..|+++++.|..|+..|...|...
T Consensus 52 aKL~Rk~DKl~~ele~l~~~l~~~ 75 (93)
T 3sjb_C 52 TKNNRKLDSLDKEINNLKDEIQSE 75 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888888887777554
No 241
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=46.94 E-value=32 Score=24.51 Aligned_cols=28 Identities=14% Similarity=0.309 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 113 NELETRVKDLERKNSELDERLSTLQNEN 140 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~L~~~v~~L~~En 140 (168)
..|..++..|+.+-..|-..|..++..+
T Consensus 9 ~~Lk~El~~L~~~E~~LD~~i~~~~~~l 36 (106)
T 2aze_B 9 EGLTQDLRQLQESEQQLDHLMNICTTQL 36 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555444444444444444333
No 242
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=46.69 E-value=40 Score=26.64 Aligned_cols=29 Identities=14% Similarity=0.161 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 111 YLNELETRVKDLERKNSELDERLSTLQNE 139 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~~E 139 (168)
.|...-.++..|+.+|..|+++.+.|..|
T Consensus 155 Li~~~L~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 155 LICYCLDTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444455555555555544444444443
No 243
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=46.65 E-value=46 Score=25.53 Aligned_cols=41 Identities=7% Similarity=0.155 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 111 YLNELETRVKDLER----------KNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 111 ~~~~LE~~v~~Le~----------eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
.++.|+.++..++. ++.+|+..+++|.+|...+++-+....
T Consensus 77 ~~d~lekKl~~aq~kL~~L~P~~P~Yak~~a~~~q~~~d~~~~~~~~~kA~ 127 (158)
T 3tul_A 77 VYDAATKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEALDKAT 127 (158)
T ss_dssp HHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555544 344567888888888888888776543
No 244
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=46.25 E-value=44 Score=27.27 Aligned_cols=49 Identities=12% Similarity=0.196 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Q 030957 109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTASRRGG 157 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~~~~ 157 (168)
.+++.+|+.++.++.+....+..+|..+++-+..|-+.+......+.|-
T Consensus 12 EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~iRr~NIRIiGV 60 (233)
T 2yko_A 12 EERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYVKRPNLRLIGV 60 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEESC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccceeEeec
Confidence 5688999999999999888888889888888888888887666555544
No 245
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=46.20 E-value=59 Score=21.14 Aligned_cols=49 Identities=16% Similarity=0.244 Sum_probs=23.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 030957 93 RLLRNRVSAQQARERKKAYLNELETRVKD-------LERKNSELDERLSTLQNENQMLR 144 (168)
Q Consensus 93 R~~rNR~AA~~sR~RKk~~~~~LE~~v~~-------Le~eN~~L~~~v~~L~~En~~Lr 144 (168)
-..+||.=|-..=+.| +++|...+.. ...+..+|+..|..|+.|+..||
T Consensus 21 ia~knr~EaE~~y~~k---~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 21 VAAKNLQEAEEWYKSK---FADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHH---HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3456665554433333 3344444433 33445555555555555554443
No 246
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=46.06 E-value=1.7e+02 Score=26.35 Aligned_cols=42 Identities=24% Similarity=0.219 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
-+|.++||.++..|......--..|..|+.-+..++-.|+.|
T Consensus 110 ~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRL 151 (491)
T 1m1j_A 110 GHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRL 151 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777776543322255555555555444444444
No 247
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=45.86 E-value=54 Score=27.37 Aligned_cols=30 Identities=23% Similarity=0.323 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNE 139 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~E 139 (168)
+.++.|+.+.+.|+.+..+|+..+..+...
T Consensus 185 ~eie~L~~~~~~L~eEi~~Le~~~e~~~k~ 214 (315)
T 2ve7_A 185 FKLESLEAKNRALNEQIARLEQERSTANKA 214 (315)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 345555555555555555555555554443
No 248
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=45.83 E-value=74 Score=24.94 Aligned_cols=37 Identities=14% Similarity=0.265 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 115 LETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 115 LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
|...+..|+.+--.|...+..-.-|+..|+.++..+.
T Consensus 70 Lh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DLr 106 (180)
T 1j1e_C 70 LHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLR 106 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHHH
Confidence 3333344444444455555555567888888887775
No 249
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=45.58 E-value=57 Score=27.74 Aligned_cols=20 Identities=20% Similarity=0.350 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030957 110 AYLNELETRVKDLERKNSEL 129 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L 129 (168)
+|+..|+.++..|.++...|
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~ 266 (426)
T 1lrz_A 247 EYIKELNEERDILNKDLNKA 266 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555554
No 250
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=45.24 E-value=8.4 Score=31.36 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 120 KDLERKNSELDERLSTLQNENQMLRHI 146 (168)
Q Consensus 120 ~~Le~eN~~L~~~v~~L~~En~~Lr~~ 146 (168)
..|.+||.+|++++..|+.++..|.+.
T Consensus 22 ~~l~~eN~~Lk~e~~~l~~~~~~~~~l 48 (255)
T 2j5u_A 22 KNTYTENQHLKERLEELAQLESEVADL 48 (255)
T ss_dssp ----CTTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777665554443
No 251
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=45.16 E-value=94 Score=27.74 Aligned_cols=38 Identities=13% Similarity=0.163 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 111 YLNELETRVKDLERKNSELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
..+.|-.++..|..+...|..++..++.+...+-..|=
T Consensus 117 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~iP 154 (501)
T 1wle_A 117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLP 154 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45677777777777777777777777766655444443
No 252
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=44.54 E-value=54 Score=20.24 Aligned_cols=9 Identities=0% Similarity=-0.204 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 030957 118 RVKDLERKN 126 (168)
Q Consensus 118 ~v~~Le~eN 126 (168)
++..+..+.
T Consensus 20 ~~~~~~~~~ 28 (60)
T 3htk_A 20 KCSLKTDEF 28 (60)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 253
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=44.07 E-value=66 Score=26.06 Aligned_cols=36 Identities=17% Similarity=0.313 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 115 LETRVKDLERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 115 LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
|..++..+..++..|...++.++.|+..++.+|.+.
T Consensus 169 La~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~ 204 (228)
T 3q0x_A 169 LAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQC 204 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555443
No 254
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=43.75 E-value=35 Score=22.62 Aligned_cols=18 Identities=6% Similarity=0.233 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 030957 133 LSTLQNENQMLRHILKNT 150 (168)
Q Consensus 133 v~~L~~En~~Lr~~L~~~ 150 (168)
|..|+.++..|...+..+
T Consensus 59 I~~L~~~~~~L~~e~~~L 76 (80)
T 1hlo_A 59 IQYMRRKNHTHQQDIDDL 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555555444
No 255
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=43.69 E-value=17 Score=29.62 Aligned_cols=20 Identities=15% Similarity=0.222 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030957 115 LETRVKDLERKNSELDERLS 134 (168)
Q Consensus 115 LE~~v~~Le~eN~~L~~~v~ 134 (168)
+..+++.|..+|.+|+.+|+
T Consensus 153 ~~~~i~ql~~En~~le~~Ie 172 (250)
T 2ve7_C 153 SADKMQQLNAAHQEALMKLE 172 (250)
T ss_dssp HHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 256
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=43.48 E-value=44 Score=25.39 Aligned_cols=33 Identities=24% Similarity=0.237 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLR 144 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr 144 (168)
+..||.++..|+.....+..+|..|+.....|.
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (192)
T 2gkw_A 2 TGLLESQLSRHDQMLSVHDIRLADMDLRFQVLE 34 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345666666666666666666666655544443
No 257
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=43.42 E-value=49 Score=19.48 Aligned_cols=18 Identities=33% Similarity=0.385 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 030957 117 TRVKDLERKNSELDERLS 134 (168)
Q Consensus 117 ~~v~~Le~eN~~L~~~v~ 134 (168)
.+|..|+.+|..|..+|.
T Consensus 20 dkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 20 DKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467777888888777664
No 258
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=43.30 E-value=20 Score=30.04 Aligned_cols=31 Identities=26% Similarity=0.414 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 115 LETRVKDLERKNSELDERLSTLQNENQMLRH 145 (168)
Q Consensus 115 LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~ 145 (168)
.+.+++.|+.+|..|..+++.|+.+...+..
T Consensus 183 ~~~eie~L~~~~~~L~eEi~~Le~~~e~~~k 213 (315)
T 2ve7_A 183 DAFKLESLEAKNRALNEQIARLEQERSTANK 213 (315)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3456667777777777777777666555554
No 259
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=43.25 E-value=78 Score=21.72 Aligned_cols=41 Identities=7% Similarity=0.108 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
+.++-.++..|..+...|..++..|..+...+...+.++..
T Consensus 8 ~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~ 48 (117)
T 2zqm_A 8 VQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIES 48 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44555666677777777777777777777777777766654
No 260
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=43.16 E-value=48 Score=22.22 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 121 DLERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 121 ~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
.|-.+|++|+.. |..-|++||..+..+
T Consensus 12 ~ll~EN~~LreA---lkqsNq~mkeR~eeL 38 (70)
T 3brv_B 12 RCLEENQELRDA---IRQSNQILRERCEEL 38 (70)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHH---HHHHHHHHHHHHHHH
Confidence 344555555542 333445555554444
No 261
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=42.91 E-value=90 Score=22.42 Aligned_cols=14 Identities=21% Similarity=0.366 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 030957 132 RLSTLQNENQMLRH 145 (168)
Q Consensus 132 ~v~~L~~En~~Lr~ 145 (168)
.|..|+.+...+|.
T Consensus 83 ~i~~lE~eL~~~r~ 96 (129)
T 3tnu_B 83 KLAELEEALQKAKQ 96 (129)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHH
Confidence 33334444333333
No 262
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=42.86 E-value=34 Score=25.31 Aligned_cols=30 Identities=13% Similarity=0.144 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 114 ELETRVKDLERKNSELDERLSTLQNENQML 143 (168)
Q Consensus 114 ~LE~~v~~Le~eN~~L~~~v~~L~~En~~L 143 (168)
+|..++..|..++.+|+.++..|..+....
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666666654443
No 263
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=42.82 E-value=53 Score=19.71 Aligned_cols=37 Identities=27% Similarity=0.396 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
+.+|..-+++|+..|.+|+---+.|.=-...|...|.
T Consensus 5 vkelknyiqeleernaelknlkehlkfakaelefela 41 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKEHLKFAKAELEFELA 41 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHH
Confidence 4567777778888888777655555555555555443
No 264
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=42.64 E-value=21 Score=24.87 Aligned_cols=18 Identities=22% Similarity=0.296 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSEL 129 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L 129 (168)
+..|+.+...|+.+..+|
T Consensus 10 i~~L~~q~~~L~~ei~~~ 27 (85)
T 3viq_B 10 VHLLEQQKEQLESSLQDA 27 (85)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444333
No 265
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=42.58 E-value=89 Score=22.20 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 030957 130 DERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 130 ~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
..+|..|+.|+..|.+.|++..
T Consensus 66 q~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 66 QARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3568888888888888888765
No 266
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=42.58 E-value=43 Score=24.66 Aligned_cols=37 Identities=19% Similarity=0.344 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
++.|+..++.|+.....|+.++..++...+.|-+.+.
T Consensus 107 i~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~~~ 143 (151)
T 2zdi_C 107 LKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQKQS 143 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888888888999999988887777766544
No 267
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=42.51 E-value=52 Score=27.14 Aligned_cols=41 Identities=20% Similarity=0.287 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcc
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHI---LKNTTA 152 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~---L~~~~~ 152 (168)
+++++..+..+..+...|..++..|..++..|... |..+..
T Consensus 94 ~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~p 137 (357)
T 3rrk_A 94 LEEAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLAA 137 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Confidence 67788888888888899999999999999998888 777653
No 268
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=41.95 E-value=24 Score=22.14 Aligned_cols=14 Identities=29% Similarity=0.423 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 030957 131 ERLSTLQNENQMLR 144 (168)
Q Consensus 131 ~~v~~L~~En~~Lr 144 (168)
.+|..|+..+..|+
T Consensus 51 ~ri~~Le~~l~~l~ 64 (70)
T 1zme_C 51 KDLNDKTEENNRLK 64 (70)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 269
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=41.77 E-value=54 Score=27.83 Aligned_cols=42 Identities=19% Similarity=0.054 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 111 YLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
.+..||..+...+.+...|+..+..+...+..|.++|..+..
T Consensus 13 ~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 13 EVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444456666666666666666666666666666666555543
No 270
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=41.63 E-value=68 Score=20.60 Aligned_cols=35 Identities=17% Similarity=0.195 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 109 KAYLNELETRVKDLERKNSELDERLSTLQNENQML 143 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~L 143 (168)
...+..||.++..++.-...|...++.+..+...+
T Consensus 5 ~~~~~~le~kl~~lEnIv~~l~~eve~~~~~lea~ 39 (65)
T 3m0d_C 5 EKLLAELEGKLRVFENIVAVLNKEVEASHLALATS 39 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34455666666666655555544444444444433
No 271
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=41.24 E-value=0.72 Score=33.67 Aligned_cols=35 Identities=23% Similarity=0.433 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 118 RVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 118 ~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
++..|+.++..|+.+++.|..||..|+..+..+..
T Consensus 59 ~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~ 93 (107)
T 3a5t_A 59 QKEELEKQKAELQQEVEKLASENASMKLELDALRS 93 (107)
T ss_dssp HHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56779999999999999999999999988876654
No 272
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=41.17 E-value=74 Score=22.53 Aligned_cols=28 Identities=18% Similarity=0.201 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQ 137 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~ 137 (168)
..+..|+.+-..|-.....++..+..|.
T Consensus 13 ~El~~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 13 QDLRQLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444444443
No 273
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=41.16 E-value=11 Score=24.51 Aligned_cols=22 Identities=41% Similarity=0.537 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030957 108 KKAYLNELETRVKDLERKNSEL 129 (168)
Q Consensus 108 Kk~~~~~LE~~v~~Le~eN~~L 129 (168)
+..|+..|+.++..||.....|
T Consensus 56 ~~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 56 KDNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHTTC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 4567888888888777655544
No 274
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=41.14 E-value=1.5e+02 Score=25.93 Aligned_cols=30 Identities=27% Similarity=0.351 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 122 LERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 122 Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
|..+-..|+.+|..|+.+...|...|..+-
T Consensus 74 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (455)
T 2dq0_A 74 LLAKSREIVKRIGELENEVEELKKKIDYYL 103 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555554443
No 275
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=41.12 E-value=1.1e+02 Score=33.87 Aligned_cols=46 Identities=17% Similarity=0.239 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 106 ERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 106 ~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
...++.+..++.++.+|+.+.+.|+.+.+.+..|.+.|+..+..+.
T Consensus 2024 ~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~ 2069 (3245)
T 3vkg_A 2024 NELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVK 2069 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666666666677777777777777777666544
No 276
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=40.96 E-value=59 Score=19.68 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 111 YLNELETRVKDLERKNSELDERLS 134 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~ 134 (168)
.+..||.+++.|++....|+..++
T Consensus 21 elaaleselqalekklaalksklq 44 (48)
T 1g6u_A 21 ELAALESELQALEKKLAALKSKLQ 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445444444444444443
No 277
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=40.94 E-value=92 Score=21.88 Aligned_cols=47 Identities=13% Similarity=0.322 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 030957 107 RKKAYLNELETRVKDLER------KNSELDERLSTLQNENQMLRHILKNTTAS 153 (168)
Q Consensus 107 RKk~~~~~LE~~v~~Le~------eN~~L~~~v~~L~~En~~Lr~~L~~~~~~ 153 (168)
.+.+-|.++-.+|..+.. +...|..+|..|..|...-..+|.+|...
T Consensus 29 WR~qvikEIs~Kv~~Iqn~~L~E~~IRdLNDEINkL~rEK~~WE~rI~eLGGp 81 (92)
T 1x4t_A 29 WRRQIIGEISKKVAQIQNAGLGEFRIRDLNDEINKLLREKGHWEVRIKELGGP 81 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 345566677777776643 66778888888999999999999888753
No 278
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=40.90 E-value=1e+02 Score=22.40 Aligned_cols=48 Identities=19% Similarity=0.244 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 98 RVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRH 145 (168)
Q Consensus 98 R~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~ 145 (168)
++=|++.-..=+.+|..|+.++.+-...........+.|..|+..|+.
T Consensus 35 ~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~ 82 (120)
T 3i00_A 35 KTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRR 82 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556666667777777776666555555555566666555543
No 279
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=40.46 E-value=69 Score=24.54 Aligned_cols=34 Identities=15% Similarity=0.131 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHhccccC
Q 030957 122 LERKNSELDERLSTLQN--ENQMLRHILKNTTASRR 155 (168)
Q Consensus 122 Le~eN~~L~~~v~~L~~--En~~Lr~~L~~~~~~~~ 155 (168)
|+.+|..|+.-.+.|.. -..+|+++|......+.
T Consensus 24 lk~Q~~~lw~~rD~L~~~ls~~eLk~lL~~N~q~~~ 59 (160)
T 2riq_A 24 LKAQNDLIWNIKDELKKVCSTNDLKELLIFNKQQVP 59 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHcCCCCC
Confidence 78888888888788876 35779999887776544
No 280
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=40.43 E-value=63 Score=29.54 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 030957 128 ELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 128 ~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
+|+++|..|+.++..-.++|+.|
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvL 136 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLL 136 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555443333333333
No 281
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=40.42 E-value=1e+02 Score=22.31 Aligned_cols=38 Identities=16% Similarity=0.137 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 030957 110 AYLNELETRVKDLERKNSE-------LDERLSTLQNENQMLRHIL 147 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~-------L~~~v~~L~~En~~Lr~~L 147 (168)
+.|.-|+.++..+...... |..+++.|..++..|..++
T Consensus 62 E~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 62 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHH
Confidence 4677777777776554443 3334444444444444443
No 282
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=40.32 E-value=90 Score=21.62 Aligned_cols=58 Identities=19% Similarity=0.279 Sum_probs=29.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 90 RLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHIL 147 (168)
Q Consensus 90 r~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L 147 (168)
.+..+++++.....-....+.....|..+-..+-.+...+..++-.+.+|...|..++
T Consensus 26 eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~ 83 (96)
T 3q8t_A 26 ELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQM 83 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666665555555555555555444444444444444444444444444433
No 283
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=40.20 E-value=35 Score=29.66 Aligned_cols=29 Identities=17% Similarity=0.146 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 122 LERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 122 Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
|..+-..|+.+|..|+.+...+...|..+
T Consensus 69 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (421)
T 1ses_A 69 LIARGKALGEEAKRLEEALREKEARLEAL 97 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555544444443
No 284
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=40.09 E-value=64 Score=19.86 Aligned_cols=29 Identities=21% Similarity=0.240 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 118 RVKDLERKNSELDERLSTLQNENQMLRHI 146 (168)
Q Consensus 118 ~v~~Le~eN~~L~~~v~~L~~En~~Lr~~ 146 (168)
++..+.....++...|.....++..|+.+
T Consensus 27 ~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 27 EFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444333
No 285
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=40.08 E-value=8.2 Score=22.67 Aligned_cols=26 Identities=19% Similarity=0.539 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQ 137 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~ 137 (168)
++.|..+++.|+.++..+..++..|+
T Consensus 6 i~avKkKiq~lq~q~d~aee~~~~~~ 31 (37)
T 3azd_A 6 LEAVRRKIRSLQEQNYHLENEVARLK 31 (37)
T ss_dssp CHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555554444
No 286
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=39.97 E-value=1.2e+02 Score=22.95 Aligned_cols=18 Identities=11% Similarity=0.148 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 030957 135 TLQNENQMLRHILKNTTA 152 (168)
Q Consensus 135 ~L~~En~~Lr~~L~~~~~ 152 (168)
.+......|.++|..+..
T Consensus 88 ~r~e~k~~l~~ql~qv~~ 105 (150)
T 4dci_A 88 ELEEQKRNLLQQQAQVRE 105 (150)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 344445555555555543
No 287
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=39.28 E-value=47 Score=24.29 Aligned_cols=13 Identities=23% Similarity=0.327 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 030957 129 LDERLSTLQNENQ 141 (168)
Q Consensus 129 L~~~v~~L~~En~ 141 (168)
|..-|.....-.+
T Consensus 41 L~~LI~KWr~asq 53 (122)
T 3viq_A 41 LQTLIQKWKNAAQ 53 (122)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 288
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=38.47 E-value=42 Score=24.49 Aligned_cols=26 Identities=19% Similarity=0.447 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 124 RKNSELDERLSTLQNENQMLRHILKN 149 (168)
Q Consensus 124 ~eN~~L~~~v~~L~~En~~Lr~~L~~ 149 (168)
+|..+|+.+|+.++..++.|++....
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ 29 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQT 29 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777777788777777776654
No 289
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=38.14 E-value=81 Score=20.43 Aligned_cols=36 Identities=17% Similarity=0.284 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 117 TRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 117 ~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
.++++|......-...+.....|+..|+..|+.+..
T Consensus 35 ~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~ 70 (77)
T 3trt_A 35 SKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTM 70 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556555555445555566667777766666553
No 290
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=38.06 E-value=1.9e+02 Score=25.80 Aligned_cols=30 Identities=10% Similarity=0.145 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 122 LERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 122 Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
|..+-..|+.+|..|+.+...|...|..+-
T Consensus 76 l~~~~~~l~~~i~~le~~~~~~~~~~~~~l 105 (485)
T 3qne_A 76 LIAEKEKLSNEKKEIIEKEAEADKNLRSKI 105 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555544444433
No 291
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=37.42 E-value=68 Score=24.58 Aligned_cols=44 Identities=9% Similarity=0.142 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 030957 111 YLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTASR 154 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~ 154 (168)
.++.|+.+...+.....+-+.++..|..+...|+.++.......
T Consensus 6 e~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafknLv~RN~~~e 49 (155)
T 2aze_A 6 ECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRHAE 49 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555556666666666666666666665443
No 292
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=36.94 E-value=1.2e+02 Score=23.60 Aligned_cols=29 Identities=17% Similarity=0.410 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 106 ERKKAYLNELETRVKDLERKNSELDERLS 134 (168)
Q Consensus 106 ~RKk~~~~~LE~~v~~Le~eN~~L~~~v~ 134 (168)
.+-+..++.||.++.....++..+...++
T Consensus 138 ~kLqkeiD~LEDeL~~eKek~k~i~~eLD 166 (175)
T 3mud_A 138 AKNEKSIDDLEEKVAHAKEENLNMHQMLD 166 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555444444444444433
No 293
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=36.67 E-value=1.2e+02 Score=21.91 Aligned_cols=13 Identities=23% Similarity=0.291 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 030957 131 ERLSTLQNENQML 143 (168)
Q Consensus 131 ~~v~~L~~En~~L 143 (168)
.+|..|+.++..|
T Consensus 42 ~El~~lr~~~~~l 54 (111)
T 2v66_B 42 DDLSQTRAIKEQL 54 (111)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 294
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=36.58 E-value=65 Score=18.91 Aligned_cols=28 Identities=21% Similarity=0.381 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 118 RVKDLERKNSELDERLSTLQNENQMLRH 145 (168)
Q Consensus 118 ~v~~Le~eN~~L~~~v~~L~~En~~Lr~ 145 (168)
+-..|-.+..+-..+|..|..||..|..
T Consensus 8 ENekLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 8 ENEKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 3445555556666677778888877753
No 295
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=36.24 E-value=1.1e+02 Score=22.07 Aligned_cols=18 Identities=28% Similarity=0.457 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 030957 117 TRVKDLERKNSELDERLS 134 (168)
Q Consensus 117 ~~v~~Le~eN~~L~~~v~ 134 (168)
.++..|..++.+|+..++
T Consensus 18 ~e~~~l~~~~~el~~~l~ 35 (125)
T 1joc_A 18 GEIEKLQTKVLELQRKLD 35 (125)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 296
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=36.07 E-value=15 Score=27.72 Aligned_cols=7 Identities=29% Similarity=0.283 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 030957 140 NQMLRHI 146 (168)
Q Consensus 140 n~~Lr~~ 146 (168)
|..|+.+
T Consensus 105 ~~~L~~q 111 (135)
T 2e7s_A 105 NKRLTEQ 111 (135)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 3333333
No 297
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=36.05 E-value=51 Score=28.95 Aligned_cols=41 Identities=17% Similarity=0.306 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
+..+.|-.++..|..+...|..++..++.+...+-..|=++
T Consensus 69 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~ 109 (455)
T 2dq0_A 69 EPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNI 109 (455)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34567777888888888888888888887766555544433
No 298
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=35.94 E-value=98 Score=20.77 Aligned_cols=22 Identities=41% Similarity=0.514 Sum_probs=14.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHH
Q 030957 95 LRNRVSAQQARERKKAYLNELE 116 (168)
Q Consensus 95 ~rNR~AA~~sR~RKk~~~~~LE 116 (168)
.+|+.+|-.+=.|||.|-..|+
T Consensus 41 ~knK~~Al~aLkrKK~~E~qL~ 62 (79)
T 4abm_A 41 TKNKRAALQALKRKKRYEKQLA 62 (79)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHhHHHHHHH
Confidence 4577777777777776644443
No 299
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=34.68 E-value=67 Score=25.25 Aligned_cols=39 Identities=13% Similarity=0.269 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 113 NELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
.+|...+..|+.+.-.|...|..-.-|+..|+.++..+.
T Consensus 65 kELh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rVnDLr 103 (182)
T 1ytz_I 65 KKLHAKIDSVDEERYDTEVKLQKTNKELEDLSQKLFDLR 103 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHH
Confidence 334444444455555555555555666777777776664
No 300
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=34.62 E-value=64 Score=23.73 Aligned_cols=24 Identities=13% Similarity=0.224 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 124 RKNSELDERLSTLQNENQMLRHIL 147 (168)
Q Consensus 124 ~eN~~L~~~v~~L~~En~~Lr~~L 147 (168)
.....|..++..|+.|+..|+..|
T Consensus 32 ~~v~~l~~e~k~l~ke~~~l~~~~ 55 (171)
T 2zvf_A 32 KTVERFFEEWKDQRKEIERLKSVI 55 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443
No 301
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=34.57 E-value=38 Score=23.99 Aligned_cols=24 Identities=17% Similarity=0.356 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 127 SELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 127 ~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
..|+++++.|..|+..|+..|...
T Consensus 59 AKL~Rk~DKl~~ele~l~~~L~s~ 82 (94)
T 3vlc_E 59 TKNNRKLDSLDKEINNLKDEIQSE 82 (94)
T ss_dssp HHHHHHHHHHHHHTTTHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458888888888888888777543
No 302
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=34.53 E-value=65 Score=28.80 Aligned_cols=38 Identities=11% Similarity=0.086 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 111 YLNELETRVKDLERKNSELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
..+.|-.++..|..+...|..++..++.+...+-..|=
T Consensus 72 ~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iP 109 (485)
T 3qne_A 72 DAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVG 109 (485)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 35677778888888888888888888877665544443
No 303
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=34.46 E-value=87 Score=20.75 Aligned_cols=40 Identities=8% Similarity=0.253 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhc
Q 030957 112 LNELETRVKDLERKNSELDE------RLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~------~v~~L~~En~~Lr~~L~~~~ 151 (168)
+..|..+...|..+...|.. ++..|..+...|++.|..+-
T Consensus 19 f~~L~~eH~~LD~~I~~le~~~~~~~~l~~LKk~KL~LKDeI~~lL 64 (76)
T 1zhc_A 19 FDKIFEKHNQLDDDIKTAEQQNASDAEVSHMKKQKLKLKDEIHSMI 64 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhHHHHHHHH
Confidence 33444444444444444321 67888888888888876653
No 304
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=34.34 E-value=64 Score=18.13 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 113 NELETRVKDLERKNSELDERLSTLQ 137 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~L~~~v~~L~ 137 (168)
..|..+|+.|...|-..+..++.|+
T Consensus 4 qalkkrvqalkarnyaakqkvqalr 28 (33)
T 1fmh_B 4 QALKKRVQALKARNYAAKQKVQALR 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4455555555555555555555444
No 305
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=34.30 E-value=80 Score=22.79 Aligned_cols=13 Identities=15% Similarity=0.350 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 030957 132 RLSTLQNENQMLR 144 (168)
Q Consensus 132 ~v~~L~~En~~Lr 144 (168)
.|..|+.+...+|
T Consensus 85 ~i~~lE~eL~~~r 97 (131)
T 3tnu_A 85 MIGSVEEQLAQLR 97 (131)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 306
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=34.28 E-value=51 Score=21.21 Aligned_cols=38 Identities=29% Similarity=0.437 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHh
Q 030957 113 NELETRVKDLERKNSELD--ERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~L~--~~v~~L~~En~~Lr~~L~~~ 150 (168)
..||.+|..|+.....|- -+|+.|......|+..+.++
T Consensus 5 kaleekvkaleekvkalggggrieelkkkweelkkkieel 44 (67)
T 1lq7_A 5 KALEEKVKALEEKVKALGGGGRIEELKKKWEELKKKIEEL 44 (67)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHh
Confidence 345555555544443331 23344444444444444443
No 307
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=34.18 E-value=47 Score=27.69 Aligned_cols=38 Identities=21% Similarity=0.429 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHILKN 149 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~ 149 (168)
|..++.++..++....++...|..|.+|++.++.+++-
T Consensus 225 I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (268)
T 2yo3_A 225 IKGVENKMKQIEDKIEEILSKIYHIENEIARIKKLIKL 262 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 34444444555555555566666666666666655543
No 308
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=34.10 E-value=43 Score=21.80 Aligned_cols=20 Identities=35% Similarity=0.408 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030957 110 AYLNELETRVKDLERKNSEL 129 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L 129 (168)
.|+..|+.++..||.....|
T Consensus 45 ~~~~~L~~r~~~le~~l~~l 64 (89)
T 3coq_A 45 AHLTEVESRLERLEQLFLLI 64 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 37788888888887766665
No 309
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=33.86 E-value=42 Score=26.51 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 108 KKAYLNELETRVKDLERKNSELDERL 133 (168)
Q Consensus 108 Kk~~~~~LE~~v~~Le~eN~~L~~~v 133 (168)
=-..+.+|+.+...|++||..|..+-
T Consensus 159 ~L~~i~~L~a~N~hLqkENeRL~~e~ 184 (186)
T 3q4f_C 159 CLDTIAENQAKNEHLQKENERLLRDW 184 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34567788888888888888887653
No 310
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=33.82 E-value=11 Score=27.40 Aligned_cols=16 Identities=38% Similarity=0.403 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 030957 120 KDLERKNSELDERLST 135 (168)
Q Consensus 120 ~~Le~eN~~L~~~v~~ 135 (168)
..|+..|..|..+|+.
T Consensus 94 ~~l~~~n~~L~~riqe 109 (118)
T 4ati_A 94 KKLEHANRHLLLRVQE 109 (118)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 311
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=33.75 E-value=1.5e+02 Score=22.36 Aligned_cols=32 Identities=19% Similarity=0.337 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 116 ETRVKDLERKNSELDERLSTLQNENQMLRHIL 147 (168)
Q Consensus 116 E~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L 147 (168)
+.+|..|.+.|..-+.+|..|+.|+..+...|
T Consensus 45 qgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~ 76 (167)
T 4gkw_A 45 QGKVDQLQKRNVAHQKEIGKLRAELGTAQRNL 76 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHhccHHHHHHHHHHHHHHHHHHhH
Confidence 34555666666655666666666555544443
No 312
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.60 E-value=53 Score=28.64 Aligned_cols=34 Identities=15% Similarity=0.205 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLRH 145 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~ 145 (168)
++.|+.+.+.|+.+...|+.++..++.|+..|+.
T Consensus 58 ~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 58 YELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQS 91 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4555666666777777777777777777666543
No 313
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=33.41 E-value=62 Score=27.37 Aligned_cols=30 Identities=3% Similarity=0.224 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 118 RVKDLERKNSELDERLSTLQNENQMLRHIL 147 (168)
Q Consensus 118 ~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L 147 (168)
.++.|+.....|+.+|..|+..+..|...+
T Consensus 29 ~I~~Lq~~le~L~~KI~~LE~~v~~q~~~~ 58 (323)
T 1lwu_B 29 SLRSMKSVLEHLRAKMQRMEEAIKTQKELC 58 (323)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555566666666666666655555544
No 314
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=32.93 E-value=1.1e+02 Score=20.55 Aligned_cols=41 Identities=7% Similarity=0.163 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
+.++-.++..|..+...|..++..|..+...+...+.++..
T Consensus 3 ~Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~ 43 (107)
T 1fxk_A 3 VQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSR 43 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34455566666667777777777777777777766666643
No 315
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.67 E-value=30 Score=30.30 Aligned_cols=36 Identities=11% Similarity=0.197 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 115 LETRVKDLERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 115 LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
|+.++..|..++..|..++..|..+...++..+..+
T Consensus 37 le~e~~~l~~e~~r~~~e~~~~~~~~~~~~~~i~~~ 72 (434)
T 4b4t_M 37 LDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKNN 72 (434)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444455555555555555555555555555443
No 316
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=32.52 E-value=1.4e+02 Score=21.64 Aligned_cols=36 Identities=17% Similarity=0.155 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 113 NELETRVKDLERKNSELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
.-|+.+...|+.+..+|...+..|...+..+...+.
T Consensus 84 ~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~ 119 (142)
T 3gp4_A 84 ELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLI 119 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555554444443
No 317
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=31.93 E-value=98 Score=22.24 Aligned_cols=31 Identities=13% Similarity=0.228 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 102 QQARERKKAYLNELETRVKDLERKNSELDER 132 (168)
Q Consensus 102 ~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~ 132 (168)
++.-...+..+.+|..++.+|......|..+
T Consensus 10 ~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkE 40 (106)
T 4e61_A 10 QAELTKSQETIGSLNEEIEQYKGTVSTLEIE 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455555555555555555555443
No 318
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=31.85 E-value=1.1e+02 Score=20.27 Aligned_cols=44 Identities=18% Similarity=0.321 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q 030957 105 RERKKAYLNELETRVKDLERKNSELDERLST-------LQNENQMLRHILK 148 (168)
Q Consensus 105 R~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~-------L~~En~~Lr~~L~ 148 (168)
|+.-...|..||.++..+..+......+.+. |..|+..+|..|.
T Consensus 7 ~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLLE 57 (74)
T 2xv5_A 7 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 57 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666777777777766655544444443 4556666666553
No 319
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=31.47 E-value=89 Score=18.94 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030957 119 VKDLERKNSELDERLSTLQNENQ 141 (168)
Q Consensus 119 v~~Le~eN~~L~~~v~~L~~En~ 141 (168)
|.+|+.+...|.-+.+.|...|.
T Consensus 5 vaqlenevaslenenetlkkknl 27 (49)
T 3he5_A 5 VAQLENEVASLENENETLKKKNL 27 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHHHhcc
Confidence 44455555555555555544443
No 320
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=31.36 E-value=56 Score=23.06 Aligned_cols=20 Identities=15% Similarity=0.351 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030957 118 RVKDLERKNSELDERLSTLQ 137 (168)
Q Consensus 118 ~v~~Le~eN~~L~~~v~~L~ 137 (168)
++..|+.+...|+.++..|.
T Consensus 5 ~l~~l~~~~~~l~~~l~~l~ 24 (149)
T 1rtm_1 5 KLANMEAEINTLKSKLELTN 24 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444443
No 321
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=31.25 E-value=3e+02 Score=24.93 Aligned_cols=15 Identities=7% Similarity=0.410 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHhccc
Q 030957 139 ENQMLRHILKNTTAS 153 (168)
Q Consensus 139 En~~Lr~~L~~~~~~ 153 (168)
+...|..+|..+...
T Consensus 568 ~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 568 ESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 344455555554443
No 322
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=31.24 E-value=1.3e+02 Score=20.67 Aligned_cols=31 Identities=13% Similarity=0.176 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957 121 DLERKNSELDERLSTLQNENQMLRHILKNTT 151 (168)
Q Consensus 121 ~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~ 151 (168)
.++++..+...+...|..|+..|+..|..+.
T Consensus 42 ~~eskL~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 42 NFASQLREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666677788888888888888888865
No 323
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=30.95 E-value=41 Score=22.38 Aligned_cols=14 Identities=36% Similarity=0.451 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHH
Q 030957 111 YLNELETRVKDLER 124 (168)
Q Consensus 111 ~~~~LE~~v~~Le~ 124 (168)
|+..|+.++..|+.
T Consensus 49 ~~~~Le~rl~~le~ 62 (96)
T 1pyi_A 49 YVFFLEDRLAVMMR 62 (96)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666665543
No 324
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=30.90 E-value=18 Score=20.27 Aligned_cols=25 Identities=24% Similarity=0.531 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 113 NELETRVKDLERKNSELDERLSTLQ 137 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~L~~~v~~L~ 137 (168)
..||.++..|++....-..+|..|+
T Consensus 3 aaleqkiaaleqkcaaceqkiaale 27 (32)
T 4g1a_A 3 AALEQKIAALEQKCAACEQKIAALE 27 (32)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666555555555554443
No 325
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=30.68 E-value=47 Score=24.25 Aligned_cols=17 Identities=12% Similarity=0.350 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 030957 130 DERLSTLQNENQMLRHI 146 (168)
Q Consensus 130 ~~~v~~L~~En~~Lr~~ 146 (168)
..+|+.|+.++..|+..
T Consensus 22 ~~~~~~l~~~l~~~~~~ 38 (182)
T 3kqg_A 22 NTKIRALQGSLENMSKL 38 (182)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 326
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.42 E-value=58 Score=28.48 Aligned_cols=33 Identities=12% Similarity=0.221 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 113 NELETRVKDLERKNSELDERLSTLQNENQMLRH 145 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~ 145 (168)
..|..+...++.++..|+.++..++.++..+++
T Consensus 42 ~~l~~e~~r~~~e~~~~~~~~~~~~~~i~~~~~ 74 (434)
T 4b4t_M 42 RIFRSELQRLSHENNVMLEKIKDNKEKIKNNRQ 74 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 344555556666666666666666666555443
No 327
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=30.03 E-value=55 Score=21.99 Aligned_cols=41 Identities=20% Similarity=0.205 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 108 KKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 108 Kk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
|++.|+.|-.=|..|.......-.-...|+.+++-++.-+.
T Consensus 15 Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~ 55 (74)
T 2q6q_A 15 KQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKIS 55 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 44445555555544444333333333334444444443333
No 328
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=29.97 E-value=1.2e+02 Score=20.17 Aligned_cols=28 Identities=7% Similarity=0.164 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 109 KAYLNELETRVKDLERKNSELDERLSTL 136 (168)
Q Consensus 109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L 136 (168)
...+.+++..+..|+.+...++..+...
T Consensus 25 ~~~~~~~q~~i~~lE~eL~~~r~e~~~q 52 (84)
T 1gk4_A 25 AVEAANYQDTIGRLQDEIQNMKEEMARH 52 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555443
No 329
>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} SCOP: h.1.34.1
Probab=29.93 E-value=1e+02 Score=20.26 Aligned_cols=29 Identities=17% Similarity=0.307 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 119 VKDLERKNSELDERLSTLQNENQMLRHIL 147 (168)
Q Consensus 119 v~~Le~eN~~L~~~v~~L~~En~~Lr~~L 147 (168)
+.+.-.|-++|+.++--|+.|..+++-.+
T Consensus 5 lr~iLqERNELKa~vf~lqeEL~yY~~e~ 33 (65)
T 1yhn_B 5 FEQILQERNELKAKVFLLKEELAYFQREL 33 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44455566678888888888877777655
No 330
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=29.81 E-value=86 Score=21.09 Aligned_cols=39 Identities=15% Similarity=0.331 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHH--H----HHHHHHHHHHHHHHHHHHH
Q 030957 110 AYLNELETRVKDLERKNSE--L----DERLSTLQNENQMLRHILK 148 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~--L----~~~v~~L~~En~~Lr~~L~ 148 (168)
..|..||.++..|+..... + -..+..|..+...|...|.
T Consensus 29 ~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe 73 (89)
T 2lw1_A 29 QLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELE 73 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999886642 1 2344444455444444443
No 331
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=29.80 E-value=1.5e+02 Score=26.33 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 126 NSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 126 N~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
-..|+.+|..|+.+...|...|..+..
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~l~ 139 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKLML 139 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666665555443
No 332
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=29.49 E-value=1.4e+02 Score=20.48 Aligned_cols=43 Identities=12% Similarity=0.296 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHH-HHHHHHHhcc
Q 030957 110 AYLNELETRVKDL--E-RKNSELDERLSTLQNENQM-LRHILKNTTA 152 (168)
Q Consensus 110 ~~~~~LE~~v~~L--e-~eN~~L~~~v~~L~~En~~-Lr~~L~~~~~ 152 (168)
+.|.+++.++..+ - ..-..+..+|...+.++.. |+..|+.+..
T Consensus 48 ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l~d 94 (97)
T 3onj_A 48 DLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQSLVD 94 (97)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444444455444 1 1233456666666777777 7777776643
No 333
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=29.11 E-value=1.6e+02 Score=21.13 Aligned_cols=35 Identities=14% Similarity=0.261 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLR 144 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr 144 (168)
..+.++...+..|+.+...++..+.....|.+.|-
T Consensus 77 ~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll 111 (131)
T 3tnu_A 77 MQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILL 111 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666666666555544444443
No 334
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=28.69 E-value=1.6e+02 Score=21.02 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 111 YLNELETRVKDLERKNSELDERLSTLQNENQMLR 144 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr 144 (168)
.+.++...+..|+.+...++..+.....|.+.|-
T Consensus 76 ~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Ll 109 (129)
T 3tnu_B 76 ALKDARNKLAELEEALQKAKQDMARLLREYQELM 109 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3444455555566666666665555544444443
No 335
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=28.53 E-value=1.4e+02 Score=20.12 Aligned_cols=34 Identities=21% Similarity=0.390 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQMLRH 145 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~ 145 (168)
+..||..+..+..+...++..|..|+.+++.|..
T Consensus 10 Vk~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL~~ 43 (74)
T 1avy_A 10 IKAIETDIASVRQEVNTAKGNISSLQGDVQALQE 43 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccchhhhheeeccccchhhhhhhhhHHHHh
Confidence 4556666666666666677777777777666654
No 336
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=28.20 E-value=1.8e+02 Score=21.38 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030957 126 NSELDERLSTLQNENQMLRHIL 147 (168)
Q Consensus 126 N~~L~~~v~~L~~En~~Lr~~L 147 (168)
|..|..++..|...|..|...|
T Consensus 52 ~~eL~~~~~~Le~~n~~L~~~l 73 (155)
T 2oto_A 52 AEELEKAKQALEDQRKDLETKL 73 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433
No 337
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=27.92 E-value=1.7e+02 Score=20.96 Aligned_cols=34 Identities=32% Similarity=0.458 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 111 YLNELETRVKDLERKNSELDERLSTLQNENQMLR 144 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr 144 (168)
.++.|..++.+|..........+..|-.+++.|.
T Consensus 19 e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq 52 (125)
T 1joc_A 19 EIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQ 52 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 5666777777766666555555555555555544
No 338
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=27.87 E-value=54 Score=27.76 Aligned_cols=35 Identities=9% Similarity=0.197 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 114 ELETRVKDLERKNSELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 114 ~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
.++.++..|+.....|+.+|..|...+..|...+.
T Consensus 15 ~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~~ 49 (319)
T 1fzc_C 15 THDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQ 49 (319)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445555555555555555555555555555443
No 339
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=27.69 E-value=93 Score=17.95 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 125 KNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 125 eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
+-..|...-+.|.+.+..|++.|..+
T Consensus 8 dE~kLl~ekE~l~~r~eqL~~kLe~L 33 (34)
T 1a93_A 8 EEQKLISEEDLLRKRREQLKHKLEQL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445555555666666666666543
No 340
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=27.58 E-value=1.1e+02 Score=18.88 Aligned_cols=36 Identities=19% Similarity=0.322 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 115 LETRVKDLERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 115 LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
-|..|..|+++...|...+..-...+..+.+.|..+
T Consensus 10 AERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD~t 45 (52)
T 2z5i_A 10 LENEVARLKKLVDDLEDELYAQKLKYKAISEELDHA 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344455555555555555444444555555555443
No 341
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=27.58 E-value=1.3e+02 Score=19.74 Aligned_cols=32 Identities=16% Similarity=0.270 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957 119 VKDLERKNSELDERLSTLQNENQMLRHILKNT 150 (168)
Q Consensus 119 v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~ 150 (168)
...|+.....|..++..|+.-...|...+...
T Consensus 41 ~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~~ 72 (99)
T 1q08_A 41 KGIVQERLQEVEARIAELQSMQRSLQRLNDAC 72 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555443
No 342
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=27.32 E-value=1.4e+02 Score=20.01 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 111 YLNELETRVKDLERKNSELDERLS 134 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~ 134 (168)
.+.++...+..|+.+..+++..+.
T Consensus 29 ~l~~~q~~i~~lE~el~~~r~e~~ 52 (86)
T 1x8y_A 29 ERDTSRRLLAEKEREMAEMRARMQ 52 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 343
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=27.29 E-value=2.4e+02 Score=24.31 Aligned_cols=42 Identities=19% Similarity=0.128 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 107 RKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 107 RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
++++....|-.++..|..+...|..++..++.+...+-..|=
T Consensus 61 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip 102 (421)
T 1ses_A 61 APPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVP 102 (421)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 334556778888888888888888888888877655544443
No 344
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=26.86 E-value=64 Score=22.11 Aligned_cols=16 Identities=31% Similarity=0.511 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNS 127 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~ 127 (168)
+.+|...+..|+++-.
T Consensus 10 i~eLk~~ve~lEkERD 25 (82)
T 3tq7_B 10 LVDLKLTVDGLEKERD 25 (82)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444445555554443
No 345
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=26.70 E-value=1.1e+02 Score=18.48 Aligned_cols=17 Identities=6% Similarity=0.219 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 030957 132 RLSTLQNENQMLRHILK 148 (168)
Q Consensus 132 ~v~~L~~En~~Lr~~L~ 148 (168)
+|+..+..+.+|+..|.
T Consensus 17 EI~Kte~kI~~lqkKlk 33 (42)
T 2l5g_B 17 EITMVEQQISKLKKKQQ 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 346
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=26.30 E-value=1.5e+02 Score=19.79 Aligned_cols=40 Identities=13% Similarity=0.234 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Q 030957 108 KKAYLNELETRVKDLERKNSELDERLST-------LQNENQMLRHIL 147 (168)
Q Consensus 108 Kk~~~~~LE~~v~~Le~eN~~L~~~v~~-------L~~En~~Lr~~L 147 (168)
-+..|..||..+..+..+......+... |..|+..+|..|
T Consensus 31 ~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLL 77 (84)
T 1gk4_A 31 YQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3445566666666665555544444443 444555555544
No 347
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=26.16 E-value=1.8e+02 Score=20.77 Aligned_cols=47 Identities=4% Similarity=0.247 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957 106 ERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 106 ~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
+.-.++|+..+.++.+--++..++..+++.|...|-.|...+..+..
T Consensus 58 Qqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kk 104 (114)
T 2xzr_A 58 QQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKK 104 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34556677777777777777777777888888877777776665543
No 348
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=25.58 E-value=27 Score=24.38 Aligned_cols=14 Identities=43% Similarity=0.603 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 030957 115 LETRVKDLERKNSE 128 (168)
Q Consensus 115 LE~~v~~Le~eN~~ 128 (168)
|+.+|-+||.+|..
T Consensus 63 LQKKImdLE~~~~~ 76 (88)
T 1uuj_A 63 LQKKVMELESKLNE 76 (88)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 349
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=25.38 E-value=88 Score=23.44 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQNENQML 143 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~L 143 (168)
+..|+..+..|+........+|..|+.....|
T Consensus 5 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (192)
T 1ca9_A 5 IEALSSKVQQLERSIGLKDLAMADLEQKVLEM 36 (192)
T ss_dssp THHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555555555544444
No 350
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=25.22 E-value=1.4e+02 Score=19.30 Aligned_cols=45 Identities=18% Similarity=0.300 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 030957 110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTASR 154 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~ 154 (168)
+.|..|...|...+..-..|..++..+..+-..|-..|..+-...
T Consensus 12 ekI~~L~~~v~~~e~~Q~~ldq~Ld~Ie~QQ~ELe~~L~~~E~~v 56 (64)
T 3t97_C 12 EKITSLHREVEKVKLDQKRLDQELDFILSQQKELEDLLSPLEESV 56 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888889999999999999999999988888888886665443
No 351
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=25.03 E-value=1.6e+02 Score=19.86 Aligned_cols=17 Identities=29% Similarity=0.638 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 030957 128 ELDERLSTLQNENQMLR 144 (168)
Q Consensus 128 ~L~~~v~~L~~En~~Lr 144 (168)
.|..+|+.|..|+..||
T Consensus 67 dLE~kvesL~eEl~fLk 83 (86)
T 3swk_A 67 DLERKVESLQEEIAFLK 83 (86)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45555555665555554
No 352
>1wdg_A E2 glycoprotein; MHV, coronavirus, heptad repeat, fusion core, viral entry, V protein; 2.06A {Murine hepatitis virus} SCOP: h.3.3.1 PDB: 1wdf_A
Probab=24.82 E-value=1.4e+02 Score=20.82 Aligned_cols=39 Identities=23% Similarity=0.407 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCC
Q 030957 122 LERKNSELDERLSTLQNENQMLRHILKNTTASRRGGSGG 160 (168)
Q Consensus 122 Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~~~~~~~ 160 (168)
+..-|..|..--+..-..-..|-+.+.++....++++|.
T Consensus 20 F~avn~AL~KIQdVVN~Qg~AL~~Lt~QL~~~~~~~~~~ 58 (94)
T 1wdg_A 20 FDATNSALGKIQSVVNANAEALNNLLNQLSLVPRGSGGS 58 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 344445554444444455566888888888877776543
No 353
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=24.75 E-value=84 Score=22.83 Aligned_cols=20 Identities=15% Similarity=0.351 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030957 118 RVKDLERKNSELDERLSTLQ 137 (168)
Q Consensus 118 ~v~~Le~eN~~L~~~v~~L~ 137 (168)
++..|+.+...|+.++..|.
T Consensus 24 ~l~~L~~~~~~L~~~l~~l~ 43 (168)
T 1buu_A 24 KLANMEAEINTLKSKLELTN 43 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444443
No 354
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=24.28 E-value=1.6e+02 Score=23.58 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 030957 109 KAYLNELETRVKDLE---RKNSELDERLSTLQNE 139 (168)
Q Consensus 109 k~~~~~LE~~v~~Le---~eN~~L~~~v~~L~~E 139 (168)
++++..||.++..|- .+|..+..++..|.-.
T Consensus 78 R~r~~~Le~~L~~Li~~A~~Ne~l~~~~~~l~l~ 111 (252)
T 3e98_A 78 RERNIEMRHRLSQLMDVARENDRLFDKTRRLVLD 111 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777776654 3777777777766543
No 355
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=23.88 E-value=65 Score=29.12 Aligned_cols=18 Identities=11% Similarity=0.315 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSEL 129 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L 129 (168)
..+|+.++..++.+....
T Consensus 337 ~~~~~~~~~~~~~~~~~~ 354 (575)
T 2i1j_A 337 QQEYQDRLRQMQEEMERS 354 (575)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555544443
No 356
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=23.83 E-value=1.2e+02 Score=23.23 Aligned_cols=31 Identities=26% Similarity=0.262 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 114 ELETRVKDLERKNSELDERLSTLQNENQMLR 144 (168)
Q Consensus 114 ~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr 144 (168)
.||.+++.|+.....-..+|..|+..+..|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 34 (198)
T 4ghu_A 4 LLESQLSRHDQMLSVHDIRLADMDLRFQVLE 34 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455555555554444445555555444443
No 357
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=23.41 E-value=2e+02 Score=20.34 Aligned_cols=29 Identities=31% Similarity=0.476 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 108 KKAYLNELETRVKDLERKNSELDERLSTL 136 (168)
Q Consensus 108 Kk~~~~~LE~~v~~Le~eN~~L~~~v~~L 136 (168)
+|.+-.+-..++++|+.|...|..++..+
T Consensus 58 ekaq~q~qq~~v~elqgEI~~Lnq~Lqda 86 (99)
T 3ni0_A 58 KVSQALEQQARIKELENEVTKLNQELENL 86 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344555555555555544443
No 358
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.39 E-value=99 Score=26.99 Aligned_cols=34 Identities=12% Similarity=0.228 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 111 YLNELETRVKDLERKNSELDERLSTLQNENQMLR 144 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr 144 (168)
....|+.+++.++.+...|..++..++.|+..|+
T Consensus 66 ~~~~~e~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 99 (437)
T 4b4t_L 66 EHRRYDDQLKQRRQNIRDLEKLYDKTENDIKALQ 99 (437)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456677777666666666666666666654443
No 359
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=22.89 E-value=1.5e+02 Score=18.53 Aligned_cols=26 Identities=27% Similarity=0.597 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 118 RVKDLERKNSELDERLSTLQNENQML 143 (168)
Q Consensus 118 ~v~~Le~eN~~L~~~v~~L~~En~~L 143 (168)
++++|+......+..|..|+.||-=|
T Consensus 15 k~eeler~lrk~kk~iKklEdeNPWL 40 (50)
T 1a92_A 15 KLEELERDLRKLKKKIKKLEEDNPWL 40 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTH
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCch
Confidence 45555666666666667777776444
No 360
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=22.79 E-value=1.5e+02 Score=22.15 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQ 137 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~ 137 (168)
+..|-.+++.|.++..+|-.+|..|.
T Consensus 100 L~~~laqLe~ls~qL~~ls~~v~~L~ 125 (140)
T 3iyn_Q 100 LTALLAQLDSLTRELNVVSQQLLDLR 125 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555554
No 361
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=22.18 E-value=1.9e+02 Score=19.60 Aligned_cols=27 Identities=15% Similarity=0.361 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 113 NELETRVKDLERKNSELDERLSTLQNE 139 (168)
Q Consensus 113 ~~LE~~v~~Le~eN~~L~~~v~~L~~E 139 (168)
.+|...+-..++....|...+.....+
T Consensus 33 ~~~~~~~~~~EKTIDDLEDkL~~eKEK 59 (77)
T 3mtu_E 33 QQLRVNYGSFVSEYNDLEEKVAHAKEE 59 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 333333333333333333333333333
No 362
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=22.17 E-value=2.2e+02 Score=20.25 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030957 121 DLERKNSELDERLSTLQNENQML 143 (168)
Q Consensus 121 ~Le~eN~~L~~~v~~L~~En~~L 143 (168)
.|.....+|...|..|+.|.=.|
T Consensus 46 ~L~e~~keLh~~I~~LEeEKYDl 68 (106)
T 1j1d_B 46 QLREKAKELWQTIYNLEAEKFDL 68 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhH
Confidence 34444455555555555553333
No 363
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=22.04 E-value=1.8e+02 Score=19.40 Aligned_cols=13 Identities=38% Similarity=0.703 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLER 124 (168)
Q Consensus 112 ~~~LE~~v~~Le~ 124 (168)
+.+|+..+..|..
T Consensus 34 l~~L~~~v~~L~~ 46 (103)
T 4i0x_B 34 LDQLESRAQKLVQ 46 (103)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 3444444444433
No 364
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=21.89 E-value=4.2e+02 Score=23.48 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=23.8
Q ss_pred HHHHH----HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 111 YLNEL----ETR-VKDLERKNSELDERLSTLQNENQMLRHILK 148 (168)
Q Consensus 111 ~~~~L----E~~-v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~ 148 (168)
..+.| -.+ +..|..+...|..++..++.+...+-..|-
T Consensus 100 ~~~~l~~~~~~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iP 142 (484)
T 3lss_A 100 QVEQLCVLQLKQLSKDLSDQVAGLAKEAQQLEEERDKLMLNVG 142 (484)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34555 556 778888888888888888877665544443
No 365
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=21.86 E-value=2.1e+02 Score=22.17 Aligned_cols=12 Identities=8% Similarity=0.194 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 030957 119 VKDLERKNSELD 130 (168)
Q Consensus 119 v~~Le~eN~~L~ 130 (168)
+..+..+...++
T Consensus 62 ~lR~~Ae~eN~r 73 (197)
T 1dkg_A 62 ILRVKAEMENLR 73 (197)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 366
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=21.80 E-value=1.2e+02 Score=21.34 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030957 110 AYLNELETRVKDLERKNSELDE 131 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~L~~ 131 (168)
+.|..|+.++..|+.+...|..
T Consensus 4 ~~l~~l~~~~~~l~~~l~~l~~ 25 (149)
T 1rtm_1 4 VKLANMEAEINTLKSKLELTNK 25 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3466666666666666666654
No 367
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=21.74 E-value=3.9e+02 Score=23.03 Aligned_cols=61 Identities=13% Similarity=0.247 Sum_probs=29.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 030957 89 KRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNE-NQMLRHILKN 149 (168)
Q Consensus 89 kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~E-n~~Lr~~L~~ 149 (168)
|...+..+-+..|.++++.=+..|..+...-..++.+...+-..++.|+.+ +..|+..|..
T Consensus 189 K~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~y~~~~~~~~~~lQ~lEeeRi~~lK~~L~~ 250 (486)
T 3haj_A 189 KLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKRLRFFREVLLE 250 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555444445555544444444444444555555444 3445555544
No 368
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=21.73 E-value=1.1e+02 Score=16.49 Aligned_cols=11 Identities=36% Similarity=0.374 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 030957 136 LQNENQMLRHI 146 (168)
Q Consensus 136 L~~En~~Lr~~ 146 (168)
|+.....||..
T Consensus 13 lqerlrklrkk 23 (27)
T 3twe_A 13 LQERLRKLRKK 23 (27)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 369
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=21.70 E-value=2.3e+02 Score=20.79 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 107 RKKAYLNELETRVKDLERKNSELDE 131 (168)
Q Consensus 107 RKk~~~~~LE~~v~~Le~eN~~L~~ 131 (168)
+.++.+..++.+++.|..+..+|++
T Consensus 135 ~~~~~~~~l~~~i~~L~~~l~~le~ 159 (166)
T 3pjs_K 135 SEKAAEEAYTRTTRALHERFDRLER 159 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555544444444433
No 370
>2ieq_A S glycoprotein, spike glycoprotein, peplomer protein, E2; membrane fusion, virus entry, six-HEL bundle, viral protein; 1.75A {Human coronavirus}
Probab=21.67 E-value=1e+02 Score=22.34 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 111 YLNELETRVKDLERKNSELDERLSTLQ 137 (168)
Q Consensus 111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~ 137 (168)
+++.||.+++.|..--.+|+.-|+.|-
T Consensus 77 elD~LEa~A~~l~~~~~elq~~idn~n 103 (109)
T 2ieq_A 77 ELKQLEAKTASLFQTTVELQGLIDQIN 103 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677777766666666666665553
No 371
>3i5c_A Fusion of general control protein GCN4 and WSPR R regulator protein; C-DI-GMP, ggdef, leucine zipper, signaling protein; HET: C2E; 1.94A {Pseudomonas aeruginosa PAO1} PDB: 3i5b_A*
Probab=21.62 E-value=94 Score=22.43 Aligned_cols=26 Identities=31% Similarity=0.585 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 112 LNELETRVKDLERKNSELDERLSTLQ 137 (168)
Q Consensus 112 ~~~LE~~v~~Le~eN~~L~~~v~~L~ 137 (168)
|..|+.++..|...+..|+..+..|.
T Consensus 2 ~~~l~~~~~~l~~~~~~~~~~~~~l~ 27 (206)
T 3i5c_A 2 MKQLEDKVEELLSKNYHLENEVARLK 27 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777766666654
No 372
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=21.56 E-value=2.2e+02 Score=20.01 Aligned_cols=29 Identities=14% Similarity=0.208 Sum_probs=17.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 95 LRNRVSAQQARERKKAYLNELETRVKDLE 123 (168)
Q Consensus 95 ~rNR~AA~~sR~RKk~~~~~LE~~v~~Le 123 (168)
..|-.+|-++=..|...|++|..++..++
T Consensus 8 ~~~L~~aEeaL~~kq~~id~lke~~~q~~ 36 (94)
T 3jsv_C 8 RQQLQQAEEALVAKQELIDKLKEEAEQHK 36 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34445566666666666666666666555
No 373
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=21.47 E-value=1.9e+02 Score=20.48 Aligned_cols=15 Identities=20% Similarity=0.273 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 030957 111 YLNELETRVKDLERK 125 (168)
Q Consensus 111 ~~~~LE~~v~~Le~e 125 (168)
.+..|..++..|+.+
T Consensus 97 ~~~~L~~~i~~Le~e 111 (117)
T 3kin_B 97 KNKALKSVIQHLEVE 111 (117)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 374
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=21.18 E-value=1.3e+02 Score=17.18 Aligned_cols=30 Identities=7% Similarity=0.380 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957 120 KDLERKNSELDERLSTLQNENQMLRHILKN 149 (168)
Q Consensus 120 ~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~ 149 (168)
.....+...+.++++.+..|+..++..+.+
T Consensus 5 aaikeeqaaieeeiqaikeeiaaikyliaq 34 (36)
T 1bb1_B 5 AAIKEEQAAIEEEIQAIKEEIAAIKYLIAQ 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445556666666777777766666654
No 375
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=21.11 E-value=2.1e+02 Score=23.22 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=11.1
Q ss_pred HHHHhHHHH-HHHHHHHHHHHHH
Q 030957 93 RLLRNRVSA-QQARERKKAYLNE 114 (168)
Q Consensus 93 R~~rNR~AA-~~sR~RKk~~~~~ 114 (168)
+-+||++.. +-+|.+|..-..+
T Consensus 97 K~IR~~E~svqp~R~~R~~l~~~ 119 (234)
T 3plt_A 97 KSIRNIEASVQPSRDRKEKITDE 119 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 346777655 4444554443333
No 376
>3t97_B Nuclear pore complex protein NUP54; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=21.05 E-value=1.8e+02 Score=19.02 Aligned_cols=19 Identities=11% Similarity=0.389 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030957 110 AYLNELETRVKDLERKNSE 128 (168)
Q Consensus 110 ~~~~~LE~~v~~Le~eN~~ 128 (168)
.|++-++.++.+|...-..
T Consensus 10 ~~Ld~i~~el~eLq~~~~~ 28 (65)
T 3t97_B 10 TRLDIISEDISELQKNQTT 28 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333
No 377
>1t7s_A BAG-1 cochaperone; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.80A {Caenorhabditis elegans} SCOP: a.7.7.1
Probab=20.80 E-value=1.5e+02 Score=22.25 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc
Q 030957 131 ERLSTLQNENQMLRHILKNTTA 152 (168)
Q Consensus 131 ~~v~~L~~En~~Lr~~L~~~~~ 152 (168)
..|+.+.++|-.|...|.....
T Consensus 108 ~~IQ~~L~~~D~l~~~i~~~~~ 129 (137)
T 1t7s_A 108 NGIQTLLNQNDALLRRLQEYQS 129 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 3444455555555555554443
No 378
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=20.23 E-value=1.9e+02 Score=18.98 Aligned_cols=19 Identities=11% Similarity=0.095 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030957 120 KDLERKNSELDERLSTLQN 138 (168)
Q Consensus 120 ~~Le~eN~~L~~~v~~L~~ 138 (168)
..|+.++..+..++..|+.
T Consensus 12 qaLk~Ekdna~e~~e~lE~ 30 (75)
T 3mtu_A 12 QMLKLDKENALDRAEQAEA 30 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444443
No 379
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=20.10 E-value=2.1e+02 Score=21.20 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccC
Q 030957 129 LDERLSTLQNENQMLRHILKNTTASRR 155 (168)
Q Consensus 129 L~~~v~~L~~En~~Lr~~L~~~~~~~~ 155 (168)
-+.+...++..+..|..+|......-.
T Consensus 51 ak~~q~~~e~rI~~L~~~L~~A~vid~ 77 (158)
T 2p4v_A 51 NKKRLREIDRRVRYLTKCMENLKIVDY 77 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCEECCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhCeecCC
Confidence 356677788889999999988776433
Done!