BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030958
(168 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 192 bits (487), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 90/150 (60%), Positives = 110/150 (73%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
D+ + PVDGFSAGLVD++++++W V +IGPPDTLYEGGFF AI+ FP +YP PP ++F
Sbjct: 14 DMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFI 73
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDES 135
SE+WHPN+ +G VCISILH PGDD GYE ERW PVHTVE PN ES
Sbjct: 74 SEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFES 133
Query: 136 PANIDAAKEWRERKDEFKKKVSRCVRKSLE 165
PAN+DAAK RE EFKKKV++CVR+S E
Sbjct: 134 PANVDAAKMQRENYAEFKKKVAQCVRRSQE 163
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 186 bits (471), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 86/145 (59%), Positives = 108/145 (74%), Gaps = 1/145 (0%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
+L KNPV+GFSAGL+D+++++ W V IIGPPDTLYEGG F A +TFP +YP+ PP ++F
Sbjct: 28 ELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFI 87
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDES 135
+E+WHPNV +G VCISILH PG+D GYE ERW P+HTVE PN +S
Sbjct: 88 TEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDS 147
Query: 136 PANIDAAKEWRE-RKDEFKKKVSRC 159
PAN+DAAKEWRE R EFK+KV+RC
Sbjct: 148 PANVDAAKEWREDRNGEFKRKVARC 172
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 174 bits (441), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 80/151 (52%), Positives = 105/151 (69%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
L NP +G AG ++E N FEW I+GP DT +E G F AI++FP +YP+SPP +RFT
Sbjct: 20 QLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFT 79
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDES 135
EM+HPN+YPDG+VCISILH PGDDP GYE + ERW+PV +VE PNDES
Sbjct: 80 CEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDES 139
Query: 136 PANIDAAKEWRERKDEFKKKVSRCVRKSLEM 166
AN+DA+K WR+ +++F K + V+KSL +
Sbjct: 140 GANVDASKMWRDDREQFYKIAKQIVQKSLGL 170
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 174 bits (441), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 80/151 (52%), Positives = 105/151 (69%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
L NP +G AG ++E N FEW I+GP DT +E G F AI++FP +YP+SPP +RFT
Sbjct: 14 QLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFT 73
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDES 135
EM+HPN+YPDG+VCISILH PGDDP GYE + ERW+PV +VE PNDES
Sbjct: 74 CEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDES 133
Query: 136 PANIDAAKEWRERKDEFKKKVSRCVRKSLEM 166
AN+DA+K WR+ +++F K + V+KSL +
Sbjct: 134 GANVDASKMWRDDREQFYKIAKQIVQKSLGL 164
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 174 bits (441), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 80/151 (52%), Positives = 105/151 (69%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
L NP +G AG ++E N FEW I+GP DT +E G F AI++FP +YP+SPP +RFT
Sbjct: 18 QLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFT 77
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDES 135
EM+HPN+YPDG+VCISILH PGDDP GYE + ERW+PV +VE PNDES
Sbjct: 78 CEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDES 137
Query: 136 PANIDAAKEWRERKDEFKKKVSRCVRKSLEM 166
AN+DA+K WR+ +++F K + V+KSL +
Sbjct: 138 GANVDASKMWRDDREQFYKIAKQIVQKSLGL 168
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 174 bits (440), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 80/151 (52%), Positives = 105/151 (69%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
L NP +G AG ++E N FEW I+GP DT +E G F AI++FP +YP+SPP +RFT
Sbjct: 17 QLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFT 76
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDES 135
EM+HPN+YPDG+VCISILH PGDDP GYE + ERW+PV +VE PNDES
Sbjct: 77 CEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDES 136
Query: 136 PANIDAAKEWRERKDEFKKKVSRCVRKSLEM 166
AN+DA+K WR+ +++F K + V+KSL +
Sbjct: 137 GANVDASKMWRDDREQFYKIAKQIVQKSLGL 167
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 155 bits (392), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 76/149 (51%), Positives = 95/149 (63%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
L K+ G AG E+N+F W I GPPDT Y G FNA + FP +YP+SPP + FT
Sbjct: 15 QLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFT 74
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDES 135
+ HPN+YP+G+VCISILH PGDDPN YELA ERW+PV +VE PN ES
Sbjct: 75 PSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIES 134
Query: 136 PANIDAAKEWRERKDEFKKKVSRCVRKSL 164
ANIDA WR+ + EF+++V + KSL
Sbjct: 135 GANIDACILWRDNRPEFERQVKLSILKSL 163
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 148 bits (374), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 70/151 (46%), Positives = 95/151 (62%), Gaps = 4/151 (2%)
Query: 17 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
L + PV+GF LVDE +++ W V+I GPP+T YEGG+F A + FP +YP SPP RF +
Sbjct: 19 LQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLT 78
Query: 77 EMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESP 136
+MWHPN+Y G VCISILHPP DDP EL +ERW P V PN SP
Sbjct: 79 KMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSP 138
Query: 137 ANIDAA---KEWRERKDEFKKKVSRCVRKSL 164
AN+DA+ ++W+E K + ++ + +RK +
Sbjct: 139 ANVDASVMYRKWKESKGK-DREYTDIIRKQV 168
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 148 bits (374), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 70/151 (46%), Positives = 95/151 (62%), Gaps = 4/151 (2%)
Query: 17 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
L + PV+GF LVDE +++ W V+I GPP+T YEGG+F A + FP +YP SPP RF +
Sbjct: 16 LQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLT 75
Query: 77 EMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESP 136
+MWHPN+Y G VCISILHPP DDP EL +ERW P V PN SP
Sbjct: 76 KMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSP 135
Query: 137 ANIDAA---KEWRERKDEFKKKVSRCVRKSL 164
AN+DA+ ++W+E K + ++ + +RK +
Sbjct: 136 ANVDASVMYRKWKESKGK-DREYTDIIRKQV 165
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 104 bits (259), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 79/147 (53%), Gaps = 14/147 (9%)
Query: 17 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
L ++P G S G E+N+ +W+ I GP T +E G F ++ F + YP PPTVRF S
Sbjct: 16 LQEDPPVGVS-GAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLS 74
Query: 77 EMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESP 136
+M+HPNVY DG +C+ IL RW+P + V PN SP
Sbjct: 75 KMFHPNVYADGSICLDILQ-------------NRWSPTYDVSSILTSIQSLLDEPNPNSP 121
Query: 137 ANIDAAKEWRERKDEFKKKVSRCVRKS 163
AN AA+ ++E K E++K+VS V +S
Sbjct: 122 ANSQAAQLYQENKREYEKRVSAIVEQS 148
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 71/132 (53%), Gaps = 13/132 (9%)
Query: 34 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
NV W+ IIGP DT YE G F ++ F + YP PP V+F SEM+HPNVY +G++C+ I
Sbjct: 32 NVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDI 91
Query: 94 LHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFK 153
L RWTP + V PN SPAN++AA +++ K ++
Sbjct: 92 LQ-------------NRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYV 138
Query: 154 KKVSRCVRKSLE 165
K+V V KS E
Sbjct: 139 KRVKETVEKSWE 150
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 100 bits (249), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 78/147 (53%), Gaps = 14/147 (9%)
Query: 17 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
L ++P G S G ++N+ W+ I GP DT ++GG F + F ++YP PPTVRF S
Sbjct: 16 LQQDPPAGIS-GAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVS 74
Query: 77 EMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESP 136
M+HPN+Y DG +C+ IL +W+P++ V PN SP
Sbjct: 75 RMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSP 121
Query: 137 ANIDAAKEWRERKDEFKKKVSRCVRKS 163
AN +AA+ + E K E+ ++V V +S
Sbjct: 122 ANSEAARMYSESKREYNRRVRDVVEQS 148
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 98.6 bits (244), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 76/147 (51%), Gaps = 14/147 (9%)
Query: 17 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
L ++P G S G E N+ W I GP +T +E G F + F + YP PPTV+F S
Sbjct: 16 LQEDPPAGVS-GAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFIS 74
Query: 77 EMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESP 136
+M+HPNVY DG +C+ IL RW+P + V PN SP
Sbjct: 75 KMFHPNVYADGSICLDILQ-------------NRWSPTYDVAAILTSIQSLLDEPNPNSP 121
Query: 137 ANIDAAKEWRERKDEFKKKVSRCVRKS 163
AN AA+ ++E + E++K+V + V +S
Sbjct: 122 ANSLAAQLYQENRREYEKRVQQIVEQS 148
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 76/147 (51%), Gaps = 14/147 (9%)
Query: 17 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
L ++P G S G E N+ W I GP +T +E G F + F + YP PPTV+F S
Sbjct: 19 LQEDPPAGVS-GAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFIS 77
Query: 77 EMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESP 136
+M+HPNVY DG +C+ IL RW+P + V PN SP
Sbjct: 78 KMFHPNVYADGSICLDILQ-------------NRWSPTYDVAAILTSIQSLLDEPNPNSP 124
Query: 137 ANIDAAKEWRERKDEFKKKVSRCVRKS 163
AN AA+ ++E + E++K+V + V +S
Sbjct: 125 ANSLAAQLYQENRREYEKRVQQIVEQS 151
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 66/130 (50%), Gaps = 11/130 (8%)
Query: 34 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
++ W V I G P T +EGG + M FP+ YP PP RFT ++HPNVYP G VC+SI
Sbjct: 43 DLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSI 102
Query: 94 LHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFK 153
L+ E W P T++ PN SPA +A +++ K E++
Sbjct: 103 LN-----------EEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYE 151
Query: 154 KKVSRCVRKS 163
K+V R++
Sbjct: 152 KRVRAQAREN 161
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 86.7 bits (213), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 14/147 (9%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GPPD+ Y+GG F + FP +YP PP + FT
Sbjct: 30 DLQRDPPAHCSAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFT 88
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDES 135
++++HPN+ +G +C+ IL +W+P TV PN +
Sbjct: 89 TKIYHPNINSNGSICLDILR-------------SQWSPALTVSKVLLSICSLLCDPNPDD 135
Query: 136 PANIDAAKEWRERKDEFKKKVSRCVRK 162
P D A+ ++ K+++ + +K
Sbjct: 136 PLVPDIAQIYKSDKEKYNRHAREWTQK 162
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 86.3 bits (212), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 14/147 (9%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GPPD+ Y+GG F + FP +YP PP + FT
Sbjct: 18 DLQRDPPAHCSAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFT 76
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDES 135
++++HPN+ +G +C+ IL +W+P TV PN +
Sbjct: 77 TKIYHPNINSNGSICLDILR-------------SQWSPALTVSKVLLSICSLLCDPNPDD 123
Query: 136 PANIDAAKEWRERKDEFKKKVSRCVRK 162
P D A+ ++ K+++ + +K
Sbjct: 124 PLVPDIAQIYKSDKEKYNRHAREWTQK 150
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 86.3 bits (212), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 14/147 (9%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GPPD+ Y+GG F + FP +YP PP + FT
Sbjct: 14 DLQRDPPAHCSAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFT 72
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDES 135
++++HPN+ +G +C+ IL +W+P TV PN +
Sbjct: 73 TKIYHPNINSNGSICLDILR-------------SQWSPALTVSKVLLSICSLLCDPNPDD 119
Query: 136 PANIDAAKEWRERKDEFKKKVSRCVRK 162
P D A+ ++ K+++ + +K
Sbjct: 120 PLVPDIAQIYKSDKEKYNRHAREWTQK 146
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 82.8 bits (203), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 59/124 (47%), Gaps = 14/124 (11%)
Query: 31 DESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVC 90
D N+F+W ++ GP DT+YE + + FP +YP PP V+FT+ WHPNV G +C
Sbjct: 34 DGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNIC 93
Query: 91 ISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKD 150
+ IL E WT + V PN+ SP N AA W +
Sbjct: 94 LDILK-------------ENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQT 139
Query: 151 EFKK 154
E+KK
Sbjct: 140 EYKK 143
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 73/147 (49%), Gaps = 14/147 (9%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 17 DLQRDPPAQCSAGPVGD-DLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 75
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDES 135
++++HPN+ +G +C+ IL +W+P TV PN +
Sbjct: 76 TKIYHPNINSNGSICLDILR-------------SQWSPALTVSKVLLSICSLLCDPNPDD 122
Query: 136 PANIDAAKEWRERKDEFKKKVSRCVRK 162
P D A ++ K+++ + +K
Sbjct: 123 PLVPDIAHIYKSDKEKYNRLAREWTQK 149
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 63/129 (48%), Gaps = 11/129 (8%)
Query: 34 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
N+ W +I G T +EGG F M F D+YP SPP +F ++HPNVYP G VC+SI
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 99
Query: 94 LHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFK 153
L D W P T++ PN +SPA +A + + + E++
Sbjct: 100 LEEDKD-----------WRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYE 148
Query: 154 KKVSRCVRK 162
K+V +K
Sbjct: 149 KRVRAQAKK 157
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 74/143 (51%), Gaps = 15/143 (10%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 22 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 80
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDES 135
+ ++HPN+ +G +C+ IL +W+P T+ PN +
Sbjct: 81 TRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDD 127
Query: 136 PANIDAAKEWRERKDEFKKKVSR 158
P + A+ ++ +D++ ++SR
Sbjct: 128 PLVPEIARIYKTDRDKY-NRISR 149
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 74/143 (51%), Gaps = 15/143 (10%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 20 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 78
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDES 135
+ ++HPN+ +G +C+ IL +W+P T+ PN +
Sbjct: 79 TRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDD 125
Query: 136 PANIDAAKEWRERKDEFKKKVSR 158
P + A+ ++ +D++ ++SR
Sbjct: 126 PLVPEIARIYKTDRDKY-NRISR 147
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 74/143 (51%), Gaps = 15/143 (10%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 14 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 72
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDES 135
+ ++HPN+ +G +C+ IL +W+P T+ PN +
Sbjct: 73 TRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDD 119
Query: 136 PANIDAAKEWRERKDEFKKKVSR 158
P + A+ ++ +D++ ++SR
Sbjct: 120 PLVPEIARIYKTDRDKY-NRISR 141
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 74/143 (51%), Gaps = 15/143 (10%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 11 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 69
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDES 135
+ ++HPN+ +G +C+ IL +W+P T+ PN +
Sbjct: 70 TRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDD 116
Query: 136 PANIDAAKEWRERKDEFKKKVSR 158
P + A+ ++ +D++ ++SR
Sbjct: 117 PLVPEIARIYKTDRDKY-NRISR 138
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 63/129 (48%), Gaps = 11/129 (8%)
Query: 34 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
N+ W +I G T +EGG F M F D+YP SPP +F ++HPNVYP G VC+SI
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 99
Query: 94 LHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFK 153
L D W P T++ PN ++PA +A + + + E++
Sbjct: 100 LEEDKD-----------WRPAITIKQILLGIQELLNEPNIQAPAQAEAYTIYCQNRVEYE 148
Query: 154 KKVSRCVRK 162
K+V +K
Sbjct: 149 KRVRAQAKK 157
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 14/147 (9%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL K+P SAG V + ++F W +I+GP D+ Y GG F + FP +YP PP V FT
Sbjct: 12 DLGKDPPSSSSAGPVGD-DLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFT 70
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDES 135
+ ++HPN+ +G +C+ IL ++W+P T+ PN +
Sbjct: 71 TRIYHPNINSNGSICLDILR-------------DQWSPALTISKVLLSISSLLTDPNPDD 117
Query: 136 PANIDAAKEWRERKDEFKKKVSRCVRK 162
P + A ++ + ++ RK
Sbjct: 118 PLVPEIAHVYKTDRSRYELSAREWTRK 144
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 73/147 (49%), Gaps = 14/147 (9%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GPP++ Y+GG F + FP +YP PP V FT
Sbjct: 15 DLGRDPPAQCSAGPVGD-DLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFT 73
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDES 135
+ ++HPN+ +G +C+ IL +W+P T+ PN +
Sbjct: 74 TRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDD 120
Query: 136 PANIDAAKEWRERKDEFKKKVSRCVRK 162
P + A+ ++ ++ + + +K
Sbjct: 121 PLVPEIARIYKTDRERYNQLAREWTQK 147
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 80.1 bits (196), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 62/129 (48%), Gaps = 11/129 (8%)
Query: 34 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
N+ W +I G T +EGG F M F D+YP SPP +F ++HPNVYP G VC+SI
Sbjct: 39 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 98
Query: 94 LHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFK 153
L D W P T++ PN + PA +A + + + E++
Sbjct: 99 LEEDKD-----------WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYE 147
Query: 154 KKVSRCVRK 162
K+V +K
Sbjct: 148 KRVRAQAKK 156
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 80.1 bits (196), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 62/129 (48%), Gaps = 11/129 (8%)
Query: 34 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
N+ W +I G T +EGG F M F D+YP SPP +F ++HPNVYP G VC+SI
Sbjct: 42 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 101
Query: 94 LHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFK 153
L D W P T++ PN + PA +A + + + E++
Sbjct: 102 LEEDKD-----------WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYE 150
Query: 154 KKVSRCVRK 162
K+V +K
Sbjct: 151 KRVRAQAKK 159
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 80.1 bits (196), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 62/129 (48%), Gaps = 11/129 (8%)
Query: 34 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
N+ W +I G T +EGG F M F D+YP SPP +F ++HPNVYP G VC+SI
Sbjct: 38 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 97
Query: 94 LHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFK 153
L D W P T++ PN + PA +A + + + E++
Sbjct: 98 LEEDKD-----------WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYE 146
Query: 154 KKVSRCVRK 162
K+V +K
Sbjct: 147 KRVRAQAKK 155
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 80.1 bits (196), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 62/129 (48%), Gaps = 11/129 (8%)
Query: 34 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
N+ W +I G T +EGG F M F D+YP SPP +F ++HPNVYP G VC+SI
Sbjct: 39 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 98
Query: 94 LHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFK 153
L D W P T++ PN + PA +A + + + E++
Sbjct: 99 LEEDKD-----------WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYE 147
Query: 154 KKVSRCVRK 162
K+V +K
Sbjct: 148 KRVRAQAKK 156
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 80.1 bits (196), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 62/129 (48%), Gaps = 11/129 (8%)
Query: 34 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
N+ W +I G T +EGG F M F D+YP SPP +F ++HPNVYP G VC+SI
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 99
Query: 94 LHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFK 153
L D W P T++ PN + PA +A + + + E++
Sbjct: 100 LEEDKD-----------WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYE 148
Query: 154 KKVSRCVRK 162
K+V +K
Sbjct: 149 KRVRAQAKK 157
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 80.1 bits (196), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 62/129 (48%), Gaps = 11/129 (8%)
Query: 34 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
N+ W +I G T +EGG F M F D+YP SPP +F ++HPNVYP G VC+SI
Sbjct: 37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 96
Query: 94 LHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFK 153
L D W P T++ PN + PA +A + + + E++
Sbjct: 97 LEEDKD-----------WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYE 145
Query: 154 KKVSRCVRK 162
K+V +K
Sbjct: 146 KRVRAQAKK 154
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 80.1 bits (196), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 73/147 (49%), Gaps = 14/147 (9%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P AG V + ++F W +I+GPPD+ Y+GG F + FP +YP PP + FT
Sbjct: 18 DLQRDPPAHCRAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFT 76
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDES 135
++++HPN+ +G + + IL +W+P TV PN +
Sbjct: 77 TKIYHPNINSNGSIKLDILR-------------SQWSPALTVSKVLLSICSLLCDPNPDD 123
Query: 136 PANIDAAKEWRERKDEFKKKVSRCVRK 162
P D A+ ++ K+++ + +K
Sbjct: 124 PLVPDIAQIYKSDKEKYNRHAREWTQK 150
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 79.7 bits (195), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 71/139 (51%), Gaps = 14/139 (10%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 30 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 88
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDES 135
+ ++HPN+ +G +C+ IL +W+P T+ PN +
Sbjct: 89 TRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDD 135
Query: 136 PANIDAAKEWRERKDEFKK 154
P + A+ ++ ++++ +
Sbjct: 136 PLVPEIARIYKTDREKYNR 154
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 79.7 bits (195), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 73/147 (49%), Gaps = 14/147 (9%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 17 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 75
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDES 135
+ ++HPN+ +G +C+ IL +W+P T+ PN +
Sbjct: 76 TRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDD 122
Query: 136 PANIDAAKEWRERKDEFKKKVSRCVRK 162
P + A+ ++ ++++ + +K
Sbjct: 123 PLVPEIARIYKTDREKYNRIAREWTQK 149
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 79.3 bits (194), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 71/139 (51%), Gaps = 14/139 (10%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 14 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 72
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDES 135
+ ++HPN+ +G +C+ IL +W+P T+ PN +
Sbjct: 73 TRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDD 119
Query: 136 PANIDAAKEWRERKDEFKK 154
P + A+ ++ ++++ +
Sbjct: 120 PLVPEIARIYKTDREKYNR 138
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 79.3 bits (194), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 71/139 (51%), Gaps = 14/139 (10%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 12 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 70
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDES 135
+ ++HPN+ +G +C+ IL +W+P T+ PN +
Sbjct: 71 TRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDD 117
Query: 136 PANIDAAKEWRERKDEFKK 154
P + A+ ++ ++++ +
Sbjct: 118 PLVPEIARIYKTDREKYNR 136
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 79.3 bits (194), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 71/139 (51%), Gaps = 14/139 (10%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 14 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 72
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDES 135
+ ++HPN+ +G +C+ IL +W+P T+ PN +
Sbjct: 73 TRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDD 119
Query: 136 PANIDAAKEWRERKDEFKK 154
P + A+ ++ ++++ +
Sbjct: 120 PLVPEIARIYKTDREKYNR 138
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 71/139 (51%), Gaps = 14/139 (10%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 22 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 80
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDES 135
+ ++HPN+ +G +C+ IL +W+P T+ PN +
Sbjct: 81 TRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDD 127
Query: 136 PANIDAAKEWRERKDEFKK 154
P + A+ ++ ++++ +
Sbjct: 128 PLVPEIARIYQTDREKYNR 146
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 72/147 (48%), Gaps = 14/147 (9%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 14 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 72
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDES 135
+ ++HPN+ +G +C+ IL +W P T+ PN +
Sbjct: 73 TRIYHPNINSNGSICLDILR-------------SQWGPALTISKVLLSICSLLCDPNPDD 119
Query: 136 PANIDAAKEWRERKDEFKKKVSRCVRK 162
P + A+ ++ ++++ + +K
Sbjct: 120 PLVPEIARIYKTDREKYNRIAREWTQK 146
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 61/129 (47%), Gaps = 11/129 (8%)
Query: 34 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
N+ W +I G T +EGG F M F D+YP SPP +F ++HP VYP G VC+SI
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPQVYPSGTVCLSI 99
Query: 94 LHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFK 153
L D W P T++ PN + PA +A + + + E++
Sbjct: 100 LEEDKD-----------WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYE 148
Query: 154 KKVSRCVRK 162
K+V +K
Sbjct: 149 KRVRAQAKK 157
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 70/147 (47%), Gaps = 14/147 (9%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL K+P SAG V + ++F W +I+GP D+ Y GG F + FP +YP PP V FT
Sbjct: 32 DLSKDPPTNCSAGPVGD-DMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFT 90
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDES 135
++++HPN+ G +C+ IL ++W+P T+ PN +
Sbjct: 91 TKIYHPNINSQGAICLDIL-------------KDQWSPALTISKVLLSISSLLTDPNPDD 137
Query: 136 PANIDAAKEWRERKDEFKKKVSRCVRK 162
P + A ++ + + + +K
Sbjct: 138 PLVPEIAHLYKSDRMRYDQTAREWSQK 164
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 73/143 (51%), Gaps = 15/143 (10%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 12 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 70
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDES 135
+ ++HPN+ +G + + IL +W+P T+ PN +
Sbjct: 71 TRIYHPNINSNGSISLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDD 117
Query: 136 PANIDAAKEWRERKDEFKKKVSR 158
P + A+ ++ +D++ ++SR
Sbjct: 118 PLVPEIARIYKTDRDKY-NRISR 139
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 70/139 (50%), Gaps = 14/139 (10%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 14 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 72
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDES 135
+ ++HPN+ +G +C+ L +W+P T+ PN +
Sbjct: 73 TRIYHPNINSNGSICLDALR-------------SQWSPALTISKVLLSICSLLCDPNPDD 119
Query: 136 PANIDAAKEWRERKDEFKK 154
P + A+ ++ ++++ +
Sbjct: 120 PLVPEIARIYKTDREKYNR 138
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 70/139 (50%), Gaps = 14/139 (10%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W + +GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 14 DLARDPPAQCSAGPVGD-DMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 72
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDES 135
+ ++HPN+ +G +C+ IL +W+P T+ PN +
Sbjct: 73 TRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDD 119
Query: 136 PANIDAAKEWRERKDEFKK 154
P + A+ ++ ++++ +
Sbjct: 120 PLVPEIARIYKTDREKYNR 138
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 14/129 (10%)
Query: 30 VDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPD-GK 88
+ +SN FEW I GP T YEGG F +T P++YP +PP ++F +++WHPN+ G
Sbjct: 47 IKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGA 106
Query: 89 VCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRER 148
+C+ +L W+P T+ P + P + + AK ++E
Sbjct: 107 ICLDVLK-------------NEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKEN 153
Query: 149 KDEFKKKVS 157
F K S
Sbjct: 154 HALFVKTAS 162
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 61/129 (47%), Gaps = 11/129 (8%)
Query: 34 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
N+ W +I G T +EGG F M F D+YP SPP +F ++HPNV P G VC+SI
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVAPSGTVCLSI 99
Query: 94 LHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFK 153
L D W P T++ PN + PA +A + + + E++
Sbjct: 100 LEEDKD-----------WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYE 148
Query: 154 KKVSRCVRK 162
K+V +K
Sbjct: 149 KRVRAQAKK 157
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 76.6 bits (187), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 61/129 (47%), Gaps = 11/129 (8%)
Query: 34 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
N+ W +I G T +EGG F M F D+YP SPP +F ++HPNVYP G V +SI
Sbjct: 37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVXLSI 96
Query: 94 LHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFK 153
L D W P T++ PN + PA +A + + + E++
Sbjct: 97 LEEDKD-----------WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYXQNRVEYE 145
Query: 154 KKVSRCVRK 162
K+V +K
Sbjct: 146 KRVRAQAKK 154
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 76.3 bits (186), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 61/129 (47%), Gaps = 11/129 (8%)
Query: 34 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
N+ W +I G T +EGG F M F D+YP SPP +F ++HPNVYP G V +SI
Sbjct: 37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSI 96
Query: 94 LHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFK 153
L D W P T++ PN + PA +A + + + E++
Sbjct: 97 LEEDKD-----------WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYE 145
Query: 154 KKVSRCVRK 162
K+V +K
Sbjct: 146 KRVRAQAKK 154
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 76.3 bits (186), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 14/130 (10%)
Query: 17 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
L PV G A DESN + V I GP D+ +EGG F + P+ YP++ P VRF +
Sbjct: 20 LLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMT 78
Query: 77 EMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESP 136
+++HPNV G++C+ IL ++W+P + PN + P
Sbjct: 79 KIYHPNVDKLGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDP 125
Query: 137 ANIDAAKEWR 146
D A++W+
Sbjct: 126 LANDVAEQWK 135
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 76.3 bits (186), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 14/130 (10%)
Query: 17 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
L PV G A DESN + V I GP D+ +EGG F + P+ YP++ P VRF +
Sbjct: 13 LLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMT 71
Query: 77 EMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESP 136
+++HPNV G++C+ IL ++W+P + PN + P
Sbjct: 72 KIYHPNVDKLGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDP 118
Query: 137 ANIDAAKEWR 146
D A++W+
Sbjct: 119 LANDVAEQWK 128
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 75.9 bits (185), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 14/130 (10%)
Query: 17 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
L PV G A DESN + V I GP D+ +EGG F + P+ YP++ P VRF +
Sbjct: 17 LLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMT 75
Query: 77 EMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESP 136
+++HPNV G++C+ IL ++W+P + PN + P
Sbjct: 76 KIYHPNVDKLGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDP 122
Query: 137 ANIDAAKEWR 146
D A++W+
Sbjct: 123 LANDVAEQWK 132
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 75.9 bits (185), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 14/130 (10%)
Query: 17 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
L PV G A DESN + V I GP D+ +EGG F + P+ YP++ P VRF +
Sbjct: 15 LLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMT 73
Query: 77 EMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESP 136
+++HPNV G++C+ IL ++W+P + PN + P
Sbjct: 74 KIYHPNVDKLGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDP 120
Query: 137 ANIDAAKEWR 146
D A++W+
Sbjct: 121 LANDVAEQWK 130
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 14/130 (10%)
Query: 17 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
L PV G A DESN + V I GP D+ +EGG F + P+ YP++ P VRF +
Sbjct: 18 LLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMT 76
Query: 77 EMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESP 136
+++HPNV G++C+ IL ++W+P + PN + P
Sbjct: 77 KIYHPNVDKLGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDP 123
Query: 137 ANIDAAKEWR 146
D A++W+
Sbjct: 124 LANDVAEQWK 133
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 14/147 (9%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 15 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 73
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDES 135
+ ++HPN+ +G + + IL +W+P T+ PN +
Sbjct: 74 TRIYHPNINSNGSISLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDD 120
Query: 136 PANIDAAKEWRERKDEFKKKVSRCVRK 162
P + A+ ++ ++++ + +K
Sbjct: 121 PLVPEIARIYKTDREKYNRIAREWTQK 147
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 70/139 (50%), Gaps = 14/139 (10%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 30 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 88
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDES 135
+ ++HPN+ +G + + IL +W+P T+ PN +
Sbjct: 89 TRIYHPNINSNGSIXLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDD 135
Query: 136 PANIDAAKEWRERKDEFKK 154
P + A+ ++ ++++ +
Sbjct: 136 PLVPEIARIYKTDREKYNR 154
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 70/139 (50%), Gaps = 14/139 (10%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 14 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 72
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDES 135
+ ++HPN+ +G + + IL +W+P T+ PN +
Sbjct: 73 TRIYHPNINSNGSISLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDD 119
Query: 136 PANIDAAKEWRERKDEFKK 154
P + A+ ++ ++++ +
Sbjct: 120 PLVPEIARIYKTDREKYNR 138
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 71/147 (48%), Gaps = 14/147 (9%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 11 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 69
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDES 135
+ ++HPN+ +G + + IL +W+P + PN +
Sbjct: 70 TRIYHPNINSNGSISLDILR-------------SQWSPALKISKVLLSICSLLCDPNPDD 116
Query: 136 PANIDAAKEWRERKDEFKKKVSRCVRK 162
P + A+ ++ ++++ + +K
Sbjct: 117 PLVPEIARIYKTDREKYNRIAREWTQK 143
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 72.8 bits (177), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 71/147 (48%), Gaps = 14/147 (9%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P SAG V + +++ W SI+GP D+ Y GG F + FP +YP PP + FT
Sbjct: 13 DLERDPPTSCSAGPVGD-DLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFT 71
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDES 135
++++HPN+ +G +C+ IL ++W+P T+ N +
Sbjct: 72 TKIYHPNINANGNICLDILK-------------DQWSPALTLSKVLLSICSLLTDANPDD 118
Query: 136 PANIDAAKEWRERKDEFKKKVSRCVRK 162
P + A ++ + +++ +K
Sbjct: 119 PLVPEIAHIYKTDRPKYEATAREWTKK 145
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 14/146 (9%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
++ ++P SAG V + ++F W+ +I GP D+ Y+GG F + FP +YP P V F
Sbjct: 15 EIQQDPPCNCSAGPVGD-DIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFM 73
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDES 135
++++HPN+ +G +C+ IL ++W+P T+ PN
Sbjct: 74 TKVYHPNINKNGVICLDILK-------------DQWSPALTLSRVLLSISSLLTDPNPSD 120
Query: 136 PANIDAAKEWRERKDEFKKKVSRCVR 161
P + + A R K +F+ R
Sbjct: 121 PLDPEVANVLRANKKQFEDTAREWTR 146
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 70/147 (47%), Gaps = 14/147 (9%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL ++P AG V + ++F W +I+GP D+ Y+GG F + FP +YP PP V FT
Sbjct: 12 DLARDPPAQCRAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 70
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDES 135
+ ++HP + +G + + IL +W+P T+ PN +
Sbjct: 71 TRIYHPAINSNGSISLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDD 117
Query: 136 PANIDAAKEWRERKDEFKKKVSRCVRK 162
P + A+ ++ ++++ + +K
Sbjct: 118 PLVPEIARIYKTDREKYNRIAREWTQK 144
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 64/137 (46%), Gaps = 15/137 (10%)
Query: 24 GFSAGLVDESN----VFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMW 79
GF A V +++ + +W I G T + GG + + +P+ YP PP V+F + +
Sbjct: 25 GFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFY 84
Query: 80 HPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANI 139
HPNVYP G +C+SIL+ D W P T++ PN SPA
Sbjct: 85 HPNVYPSGTICLSILNEDQD-----------WRPAITLKQIVLGVQDLLDSPNPNSPAQE 133
Query: 140 DAAKEWRERKDEFKKKV 156
A + + K E+ KKV
Sbjct: 134 PAWRSFSRNKAEYDKKV 150
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 64/137 (46%), Gaps = 15/137 (10%)
Query: 24 GFSAGLVDESN----VFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMW 79
GF A V +++ + +W I G T + GG + + +P+ YP PP V+F + +
Sbjct: 23 GFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFY 82
Query: 80 HPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANI 139
HPNVYP G +C+SIL+ D W P T++ PN SPA
Sbjct: 83 HPNVYPSGTICLSILNEDQD-----------WRPAITLKQIVLGVQDLLDSPNPNSPAQE 131
Query: 140 DAAKEWRERKDEFKKKV 156
A + + K E+ KKV
Sbjct: 132 PAWRSFSRNKAEYDKKV 148
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 14/140 (10%)
Query: 17 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
L +PV G +A D+ N+ + V+I GP + YE G F + PD+YP+ P VRF +
Sbjct: 15 LVSDPVPGITAEPHDD-NLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLT 73
Query: 77 EMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESP 136
+++HPN+ G++C+ +L W+P + PN P
Sbjct: 74 KIYHPNIDRLGRICLDVLK-------------TNWSPALQIRTVLLSIQALLASPNPNDP 120
Query: 137 ANIDAAKEWRERKDEFKKKV 156
D A++W + + K K
Sbjct: 121 LANDVAEDWIKNEQGAKAKA 140
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 14/140 (10%)
Query: 17 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
L +PV G +A D+ N+ + V+I GP + YE G F + PD+YP+ P VRF +
Sbjct: 17 LVSDPVPGITAEPHDD-NLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLT 75
Query: 77 EMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESP 136
+++HPN+ G++C+ +L W+P + PN P
Sbjct: 76 KIYHPNIDRLGRICLDVLK-------------TNWSPALQIRTVLLSIQALLASPNPNDP 122
Query: 137 ANIDAAKEWRERKDEFKKKV 156
D A++W + + K K
Sbjct: 123 LANDVAEDWIKNEQGAKAKA 142
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 29 LVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYP-DG 87
LVDE N E I GPPDT YEGG + + P+ YP +PP VRF +++WHPN+ G
Sbjct: 84 LVDE-NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTG 142
Query: 88 KVCISIL 94
+C+ IL
Sbjct: 143 AICLDIL 149
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 29 LVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYP-DG 87
LVDE N E I GPPDT YEGG + + P+ YP +PP VRF +++WHPN+ G
Sbjct: 48 LVDE-NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTG 106
Query: 88 KVCISIL 94
+C+ IL
Sbjct: 107 AICLDIL 113
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 66.2 bits (160), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 14/134 (10%)
Query: 31 DESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVC 90
+ N+F+W +I G T+YE + + FP YP + PTV+F + +HPNV G +
Sbjct: 55 ESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNIS 114
Query: 91 ISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKD 150
+ IL E+W+ ++ V PN +SP N AA+ W+
Sbjct: 115 LDILK-------------EKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWK-NPT 160
Query: 151 EFKKKVSRCVRKSL 164
FKK + K +
Sbjct: 161 AFKKYLQETYSKQV 174
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 66.2 bits (160), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 29 LVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYP-DG 87
LVDE N E I GPPDT YEGG + + P+ YP +PP VRF +++WHPN+ G
Sbjct: 35 LVDE-NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTG 93
Query: 88 KVCISIL 94
+C+ IL
Sbjct: 94 AICLDIL 100
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 66.2 bits (160), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 29 LVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYP-DG 87
LVDE N E I GPPDT YEGG + + P+ YP +PP VRF +++WHPN+ G
Sbjct: 33 LVDE-NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTG 91
Query: 88 KVCISIL 94
+C+ IL
Sbjct: 92 AICLDIL 98
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 66.2 bits (160), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 13/141 (9%)
Query: 22 VDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHP 81
+ F VDE+N+ W +I P + Y+ G F + FP YP PP + F ++++HP
Sbjct: 19 MKNFRNIQVDEANLLTWQ-GLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHP 77
Query: 82 NVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDA 141
N+ G+VC+ + ++ E W P + P E P D
Sbjct: 78 NIDEKGQVCLPV------------ISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADL 125
Query: 142 AKEWRERKDEFKKKVSRCVRK 162
A+E+ + + +F K +K
Sbjct: 126 AEEYSKDRKKFCKNAEEFTKK 146
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 66.2 bits (160), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
D+ +P SAG + N++EW +I+GPP ++YEGG F +TF YP PP V F
Sbjct: 59 DITLDPPPNCSAGPKGD-NIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFR 117
Query: 76 SEMWHPNVYPDGKVCISIL 94
+ ++H N+ G +C+ IL
Sbjct: 118 TRIYHCNINSQGVICLDIL 136
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 65.9 bits (159), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 29 LVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYP-DG 87
LVDE N E I GPPDT YEGG + + P+ YP +PP VRF +++WHPN+ G
Sbjct: 32 LVDE-NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTG 90
Query: 88 KVCISIL 94
+C+ IL
Sbjct: 91 AICLDIL 97
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 13/141 (9%)
Query: 22 VDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHP 81
+ F VDE+N+ W +I P + Y+ G F + FP YP PP + F ++++HP
Sbjct: 21 MKNFRNIQVDEANLLTWQ-GLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHP 79
Query: 82 NVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDA 141
N+ G+VC+ + ++ E W P + P E P D
Sbjct: 80 NIDEKGQVCLPV------------ISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADL 127
Query: 142 AKEWRERKDEFKKKVSRCVRK 162
A+E+ + + +F K +K
Sbjct: 128 AEEYSKDRKKFCKNAEEFTKK 148
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 13/129 (10%)
Query: 34 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
N++EW +I+GPP ++YEGG F +TF +YP PP V F + ++H N+ G +C+ I
Sbjct: 31 NIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDI 90
Query: 94 LHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFK 153
L + W+P T+ N P A ++ + E
Sbjct: 91 LK-------------DNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHD 137
Query: 154 KKVSRCVRK 162
+ + ++
Sbjct: 138 RMARQWTKR 146
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 14/143 (9%)
Query: 20 NPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMW 79
+P + V ES++ + +GPP T YEGG F + P YP PP ++F ++++
Sbjct: 16 DPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVY 75
Query: 80 HPNVYP-DGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPAN 138
HPN+ G +C+ IL W+PV T++ P P +
Sbjct: 76 HPNISSVTGAICLDIL-------------KNAWSPVITLKSALISLQALLQSPEPNDPQD 122
Query: 139 IDAAKEWRERKDEFKKKVSRCVR 161
+ A+ + ++ F K + R
Sbjct: 123 AEVAQHYLRDRESFNKTAALWTR 145
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 14/136 (10%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
+L P G A V E N +++ I GP T YEGG + + P+ YP+ PP VRF
Sbjct: 12 NLANEPPPGIMAVPVPE-NYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFL 70
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDES 135
++++HPN+ G++C+ IL ++W+P + P +
Sbjct: 71 TKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSSPEPDD 117
Query: 136 PANIDAAKEWRERKDE 151
P + A+ +++ K++
Sbjct: 118 PLDSKVAEHFKQDKND 133
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 14/136 (10%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
+L P G A V E N +++ I GP T YEGG + + P+ YP+ PP VRF
Sbjct: 12 NLANEPPPGIMAVPVPE-NYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFL 70
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDES 135
++++HPN+ G++C+ IL ++W+P + P +
Sbjct: 71 TKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSSPEPDD 117
Query: 136 PANIDAAKEWRERKDE 151
P + A+ +++ K++
Sbjct: 118 PLDSKVAEHFKQDKND 133
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 14/140 (10%)
Query: 17 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
L +PV G +A D+ N+ + V+I GP + YE G F + PD+YP+ P VRF +
Sbjct: 15 LVSDPVPGITAEPHDD-NLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLT 73
Query: 77 EMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESP 136
+++HPN+ G++ + +L W+P + PN P
Sbjct: 74 KIYHPNIDRLGRISLDVLK-------------TNWSPALQIRTVLLSIQALLASPNPNDP 120
Query: 137 ANIDAAKEWRERKDEFKKKV 156
D A++W + + K K
Sbjct: 121 LANDVAEDWIKNEQGAKAKA 140
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 14/143 (9%)
Query: 20 NPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMW 79
+P + V ES++ + +GPP T YEGG F + P YP PP ++F ++++
Sbjct: 17 DPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVY 76
Query: 80 HPNVYP-DGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPAN 138
HPN+ G +C+ IL W+PV T++ P P +
Sbjct: 77 HPNISSVTGAICLDILR-------------NAWSPVITLKSALISLQALLQSPEPNDPQD 123
Query: 139 IDAAKEWRERKDEFKKKVSRCVR 161
+ A+ + ++ F K + R
Sbjct: 124 AEVAQHYLRDRESFNKTAALWTR 146
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 9/132 (6%)
Query: 31 DESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVC 90
D+ + + I+G +T YE G F + P+ YP PP +RF + ++HPN+ G++C
Sbjct: 29 DKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRIC 88
Query: 91 ISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKD 150
+ +L P P G W P + PN + P D + E++ K
Sbjct: 89 LDVLKLP---PKGA------WRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKP 139
Query: 151 EFKKKVSRCVRK 162
F K + K
Sbjct: 140 AFLKNARQWTEK 151
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 13/139 (9%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL K P D++NV W +++ P Y FN ++FP YP PP ++FT
Sbjct: 12 DLQKKPPPYLRNLSSDDANVLVWH-ALLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFT 70
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDES 135
++++HPNV +G++C+ I +++E W P PN
Sbjct: 71 TKIYHPNVDENGQICLPI------------ISSENWKPCTKTCQVLEALNVLVNRPNIRE 118
Query: 136 PANIDAAKEWRERKDEFKK 154
P +D A + + F+K
Sbjct: 119 PLRMDLADLLTQNPELFRK 137
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Query: 43 IGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPN 102
+ P + Y+GG F PD Y + PP V+ +++WHPN+ G++C+S+L D
Sbjct: 51 VTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGT 110
Query: 103 GYELATERWTPVHTVEXXX-XXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSRCVR 161
G W P T++ N + P NI+AA+ K++F+ KV ++
Sbjct: 111 G-------WAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIK 163
Query: 162 K 162
+
Sbjct: 164 R 164
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 70/148 (47%), Gaps = 16/148 (10%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
D K + G+ L + S ++ V GP T YEGG + +T PD+YP + P++ F
Sbjct: 10 DFTKLIMAGYDLELNNGSTQ-DFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFM 68
Query: 76 SEMWHPNV-YPDGKVCISILHPPGDDPNGYELATERWTPVHT-VEXXXXXXXXXXXXPND 133
+++ HPNV G VC+ +++ + WTP+++ V PN
Sbjct: 69 NKLLHPNVDEASGSVCLDVIN-------------QTWTPLYSLVNVFEVFLPQLLTYPNP 115
Query: 134 ESPANIDAAKEWRERKDEFKKKVSRCVR 161
P N DAA + K+ +++KV V+
Sbjct: 116 SDPLNSDAASLLMKDKNIYEEKVKEYVK 143
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 13/139 (9%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL K P D++NV W +++ P Y FN ++FP YP PP ++FT
Sbjct: 15 DLQKKPPPYLRNLSSDDANVLVWH-ALLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFT 73
Query: 76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDES 135
++++HPNV +G++C+ I +++E W P PN
Sbjct: 74 TKIYHPNVDENGQICLPI------------ISSENWKPCTKTCQVLEALNVLVNRPNIRE 121
Query: 136 PANIDAAKEWRERKDEFKK 154
P +D A + + F+K
Sbjct: 122 PLRMDLADLLTQNPELFRK 140
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Query: 43 IGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPN 102
+ P + Y+GG F PD Y + PP V+ +++WHPN+ G++C+S+L D
Sbjct: 51 VTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGT 110
Query: 103 GYELATERWTPVHTVEXXX-XXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSRCVR 161
G W P T++ N + P NI+AA+ K++F+ KV ++
Sbjct: 111 G-------WAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIK 163
Query: 162 K 162
+
Sbjct: 164 R 164
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 14/140 (10%)
Query: 17 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
L +PV G +A D+ N+ + V+I GP + YE G F + PD+YP+ P VRF +
Sbjct: 15 LVSDPVPGITAEPHDD-NLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLT 73
Query: 77 EMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESP 136
+++HP + G++ + +L W+P + PN P
Sbjct: 74 KIYHPAIDRLGRISLDVLK-------------TNWSPALQIRTVLLSIQALLASPNPNDP 120
Query: 137 ANIDAAKEWRERKDEFKKKV 156
D A++W + + K K
Sbjct: 121 LANDVAEDWIKNEQGAKAKA 140
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 15/121 (12%)
Query: 24 GFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNV 83
G SA +V ++ W I GP T YEGG F + P +YP +PP ++F +++WHPN+
Sbjct: 64 GVSAQIVG-GDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNI 122
Query: 84 YPD-GKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAA 142
G +C+ IL W+P T+ P P + + A
Sbjct: 123 SSQTGAICLDIL-------------KHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVA 169
Query: 143 K 143
K
Sbjct: 170 K 170
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 15/128 (11%)
Query: 37 EWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNV-YPDGKVCISILH 95
E+ V GP T YEGG + + PD YP P++ F ++++HPN+ G VC+ +++
Sbjct: 52 EFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVIN 111
Query: 96 PPGDDPNGYELATERWTPVHTVEXXXXXXX-XXXXXPNDESPANIDAAKEWRERKDEFKK 154
+ WT ++ + PN P N DAA + R +E+K+
Sbjct: 112 -------------QTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQ 158
Query: 155 KVSRCVRK 162
K+ ++K
Sbjct: 159 KIKEYIQK 166
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 14/139 (10%)
Query: 17 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
L +P DG +E ++ + V+I GP T Y GG F + ++P SPP F +
Sbjct: 25 LTADPPDGIKV-FPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLT 83
Query: 77 EMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESP 136
+++HPNV +G++C+++L WT + PN ES
Sbjct: 84 KIFHPNVGANGEICVNVL-------------KRDWTAELGIRHVLLTIKCLLIHPNPESA 130
Query: 137 ANIDAAKEWRERKDEFKKK 155
N +A + E +E+ +
Sbjct: 131 LNEEAGRLLLENYEEYAAR 149
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 15/89 (16%)
Query: 32 ESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMW--HPNVYPDGKV 89
++++ +W V + G P TLYEG F + F YP P V FT E HP+VY +G +
Sbjct: 50 QNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHI 109
Query: 90 CISILHPPGDDPNGYELATERWTPVHTVE 118
C+SIL TE W+P +V+
Sbjct: 110 CLSIL-------------TEDWSPALSVQ 125
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 13/129 (10%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
DL +N G +A V E ++ EW V I G +++++G F + F Y +PP V+F
Sbjct: 34 DLKENNYKGITAKPVSE-DMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFI 92
Query: 76 SEMWHPNVYPD-GKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDE 134
+ +HPNV P G+ CI L D+P E+W +T+ P E
Sbjct: 93 TIPFHPNVDPHTGQPCIDFL----DNP-------EKWNTNYTLSSILLALQVMLSNPVLE 141
Query: 135 SPANIDAAK 143
+P N++AA+
Sbjct: 142 NPVNLEAAR 150
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 13/120 (10%)
Query: 42 IIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDP 101
+I P + Y+ G F YP PP V+ + ++HPN+ +G VC++IL
Sbjct: 40 VICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETXVYHPNIDLEGNVCLNILR------ 93
Query: 102 NGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSRCVR 161
E W PV T+ PN E P N +AA+ + + F++ V R R
Sbjct: 94 -------EDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSXR 146
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 61/135 (45%), Gaps = 16/135 (11%)
Query: 16 DLCKNPVDGFSAGL--VDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVR 73
D NP G L +DE+++ +W I GP DT YE F ++ P +YP++PP +
Sbjct: 26 DPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKIS 85
Query: 74 F-TSEMWHPNV-YPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXP 131
F + + H NV G++C++IL P E WTPV + P
Sbjct: 86 FMQNNILHSNVKSATGEICLNILKP------------EEWTPVWDLLHCVHAVWRLLREP 133
Query: 132 NDESPANIDAAKEWR 146
+SP ++D R
Sbjct: 134 VSDSPLDVDIGNIIR 148
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Query: 31 DESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWH-----PNVYP 85
DE + V I GP DT Y G F + FP +YP SPP V + H PN+Y
Sbjct: 105 DEERLDIXKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYN 164
Query: 86 DGKVCISILHPPGDDPNGYELATERWTP 113
DGKVC+SIL+ P E+W P
Sbjct: 165 DGKVCLSILNTWHGRPE------EKWNP 186
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 16/131 (12%)
Query: 20 NPVDGFSAGL--VDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT-S 76
NP G L +DE+++ +W I GP DT YE F ++ P +YP++PP + F +
Sbjct: 30 NPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQN 89
Query: 77 EMWHPNVY-PDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDES 135
+ H NV G++C++IL P E WTPV + P +S
Sbjct: 90 NILHCNVKSATGEICLNILKP------------EEWTPVWDLLHCVHAVWRLLREPVCDS 137
Query: 136 PANIDAAKEWR 146
P ++D R
Sbjct: 138 PLDVDIGNIIR 148
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 16/131 (12%)
Query: 20 NPVDGFSAGL--VDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT-S 76
NP G L +DE+++ +W I GP DT YE F ++ P +YP++PP + F +
Sbjct: 30 NPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQN 89
Query: 77 EMWHPNVY-PDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDES 135
+ H NV G++C++IL P E WTPV + P +S
Sbjct: 90 NILHCNVKSATGEICLNILKP------------EEWTPVWDLLHCVHAVWRLLREPVCDS 137
Query: 136 PANIDAAKEWR 146
P ++D R
Sbjct: 138 PLDVDIGAIIR 148
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 30 VDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSE-MWHPNVYPDGK 88
V SN+ W V +G +T+Y + + FPDNYP+ PP V F + H +VY +G
Sbjct: 44 VHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYSNGD 103
Query: 89 VCISILHPPGDDPN 102
+C+S+L GDD N
Sbjct: 104 ICLSVL---GDDYN 114
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 13/120 (10%)
Query: 42 IIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDP 101
+I P + Y+ G F YP PP V+ + ++HPN+ +G V ++IL
Sbjct: 60 VICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILR------ 113
Query: 102 NGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSRCVR 161
E W PV T+ PN E P N +AA+ + + F++ V R +R
Sbjct: 114 -------EDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMR 166
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 13/115 (11%)
Query: 42 IIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDP 101
I+ P + Y G N + F + YP+ PP V +++HPN+ G VC++IL
Sbjct: 69 IVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILR------ 122
Query: 102 NGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKV 156
E W+P ++ PN P N DAAK E + EF + V
Sbjct: 123 -------EDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAV 170
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 30 VDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSE-MWHPNVYPDGK 88
V +N+ W V +G +T+Y + + FPD+YP+ PP V F + H +VY +G
Sbjct: 30 VHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGD 89
Query: 89 VCISILHPPGDDPN 102
+C+S+L GDD N
Sbjct: 90 ICLSLL---GDDYN 100
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 20 NPVDGFSAGL--VDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSE 77
N +G S GL D+ + WS +I G P T++E ++ + DNYP SPPTV+F ++
Sbjct: 41 NVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTK 100
Query: 78 MWHPNVYPDGKVCISILH 95
+ V G+V + LH
Sbjct: 101 IEMSCVDNCGRVIKNNLH 118
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 20 NPVDGFSAGL--VDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSE 77
N +G S GL D+ + WS +I G P T++E ++ + DNYP SPPTV+F ++
Sbjct: 37 NVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTK 96
Query: 78 MWHPNVYPDGKVCISILH 95
+ V G+V + LH
Sbjct: 97 IEMSCVDNCGRVIKNNLH 114
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 30 VDESNVFEWSVSIIGPPDTLY--EGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDG 87
VD ++ W + + P D++Y G + + F D+YP PPTVRF + ++ P V +G
Sbjct: 44 VDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEG 103
Query: 88 KVC 90
+C
Sbjct: 104 GIC 106
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 8/68 (11%)
Query: 33 SNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPN--VYPDGKVC 90
SN+ EW + GP T YEGG+++ + FP +P PP++ M PN + ++C
Sbjct: 41 SNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIY----MITPNGRFKCNTRLC 96
Query: 91 ISI--LHP 96
+SI HP
Sbjct: 97 LSITDFHP 104
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 15/110 (13%)
Query: 35 VFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNV-YPDGKVCISI 93
V E+ V GP T YE G + + P +YP P++ F + + HPNV G VC+ +
Sbjct: 37 VAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDV 96
Query: 94 LHPPGDDPNGYELATERWTPVHTVEXXXXXXX-XXXXXPNDESPANIDAA 142
++ + WTP++ +E PN P N+ AA
Sbjct: 97 IN-------------QTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAA 133
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 26 SAGLVDESNVF--EWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNV 83
S GL D ++ +W+ +I+GPP + +E ++ + NYP SPP V F S++ P V
Sbjct: 28 SYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCV 87
Query: 84 YPDGKVCISILHPPGDDPNGYELAT 108
P + H D Y + T
Sbjct: 88 NPTTGEVQTDFHTLRDWKRAYTMET 112
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 26 SAGLVDESNVF--EWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNV 83
S GL D ++ +W+ +I+GPP + +E ++ + NYP SPP V F S++ P V
Sbjct: 27 SYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCV 86
Query: 84 YPDGKVCISILHPPGDDPNGYELAT 108
P + H D Y + T
Sbjct: 87 NPTTGEVQTDFHTLRDWKRAYTMET 111
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 26 SAGLVDESN--VFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEM 78
S GL D+ + + W+ IIGPP T+YE ++ + YP +PP VRF +++
Sbjct: 57 SWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKI 111
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 26 SAGLVDESN--VFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEM 78
S GL D+ + + W+ IIGPP T+YE ++ + YP +PP VRF +++
Sbjct: 47 SWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKI 101
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 25 FSAGLVDESN--VFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEM 78
S GL D+ + + W+ IIGPP T YE ++ + YP +PP+VRF +++
Sbjct: 25 VSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKI 80
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 26 SAGLVDESN--VFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEM 78
S GL D+ + + W+ I+GPP T+YE ++ + YP +PP VRF +++
Sbjct: 29 SWGLEDDEDMTLTRWTGMILGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKI 83
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 25 FSAGLVDESN--VFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEM 78
S GL D+ + + W+ IIGPP T YE ++ + YP +PP+VRF +++
Sbjct: 26 VSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKI 81
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 25 FSAGLVDESN--VFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEM 78
S GL D+ + + W+ IIGPP T YE ++ + YP +PP+VRF +++
Sbjct: 31 VSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKI 86
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 25 FSAGLVDESN--VFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEM 78
S GL D+ + + W+ IIGPP T YE ++ + YP +PP+VRF +++
Sbjct: 36 VSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKI 91
>pdb|2QGX|A Chain A, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|B Chain B, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|C Chain C, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|D Chain D, Ubiquitin-Conjugating Enzyme E2q
Length = 169
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 13/61 (21%)
Query: 59 MTFPDNYPVSPPTVRFTSEMWHPN-VYPDGKVCISILHPPGDDPNGYELATERWTPVHTV 117
+F DN+P PP VR S + V G +C+ +L G W+ +++
Sbjct: 74 FSFKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQG------------WSSAYSI 121
Query: 118 E 118
E
Sbjct: 122 E 122
>pdb|4EMY|A Chain A, Crystal Structure Of Aminotransferase From Anaerococcus
Prevotii Dsm 20548.
pdb|4EMY|B Chain B, Crystal Structure Of Aminotransferase From Anaerococcus
Prevotii Dsm 20548.
pdb|4EMY|C Chain C, Crystal Structure Of Aminotransferase From Anaerococcus
Prevotii Dsm 20548.
pdb|4EMY|D Chain D, Crystal Structure Of Aminotransferase From Anaerococcus
Prevotii Dsm 20548
Length = 413
Score = 29.6 bits (65), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 86 DGKVCISILHPPGDDPNGYELATERWTPVHT 116
D S+++ PG++P GY L+ E W V T
Sbjct: 176 DSDRIASLINSPGNNPTGYSLSDEEWDEVIT 206
>pdb|3H5L|A Chain A, Crystal Structure Of A Putative Branched-Chain Amino Acid
Abc Transporter From Silicibacter Pomeroyi
pdb|3H5L|B Chain B, Crystal Structure Of A Putative Branched-Chain Amino Acid
Abc Transporter From Silicibacter Pomeroyi
Length = 419
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 38 WSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVY 84
W PP+TLY GGF + DN S P + + + P +Y
Sbjct: 131 WGTFQYDPPETLYGGGFLKFLKDIEDNGEFSRPNNKI-AIITGPGIY 176
>pdb|1QHK|A Chain A, N-Terminal Domain Of Saccharomyces Cerevisiae Rnase Hi
Reveals A Fold With A Resemblance To The N-Terminal
Domain Of Ribosomal Protein L9
Length = 47
Score = 26.9 bits (58), Expect = 5.4, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 18 CKNPVDGFSAGLVDESNVFEWSVSIIG 44
CKN VDG+ + + N +E + S +G
Sbjct: 21 CKNQVDGYGGAIYKKFNSYEQAKSFLG 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.136 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,301,446
Number of Sequences: 62578
Number of extensions: 223148
Number of successful extensions: 599
Number of sequences better than 100.0: 124
Number of HSP's better than 100.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 402
Number of HSP's gapped (non-prelim): 126
length of query: 168
length of database: 14,973,337
effective HSP length: 92
effective length of query: 76
effective length of database: 9,216,161
effective search space: 700428236
effective search space used: 700428236
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)